AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018791

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018791.t1 MTR_0305s0020 99.742 774 2 0 1 774 1 774 0.0 1605
MS.gene018791.t1 MTR_7g092770 93.557 776 47 3 1 774 1 775 0.0 1519
MS.gene018791.t1 MTR_4g066150 82.581 775 129 4 1 774 1 770 0.0 1333
MS.gene018791.t1 MTR_3g027150 68.608 790 225 8 7 774 34 822 0.0 1155
MS.gene018791.t1 MTR_4g023460 71.561 756 209 5 24 774 388 1142 0.0 1152
MS.gene018791.t1 MTR_5g010390 68.597 777 234 4 6 774 233 1007 0.0 1148
MS.gene018791.t1 MTR_0291s0010 67.342 790 239 8 3 774 9 797 0.0 1134
MS.gene018791.t1 MTR_4g033215 65.891 774 252 8 8 774 276 1044 0.0 1064
MS.gene018791.t1 MTR_8g031270 60.385 780 291 7 6 774 231 1003 0.0 1002
MS.gene018791.t1 MTR_7g076900 59.391 788 290 9 8 774 235 1013 0.0 973
MS.gene018791.t1 MTR_4g057675 58.471 785 303 11 2 774 10 783 0.0 891
MS.gene018791.t1 MTR_4g071870 56.178 785 287 12 2 774 10 749 0.0 857
MS.gene018791.t1 MTR_4g107850 53.351 776 318 14 18 774 288 1038 0.0 808
MS.gene018791.t1 MTR_6g027540 52.163 763 318 13 32 774 274 1009 0.0 781
MS.gene018791.t1 MTR_6g028050 48.231 763 357 13 30 774 284 1026 0.0 736
MS.gene018791.t1 MTR_1g015540 48.718 780 368 13 12 774 9 773 0.0 699
MS.gene018791.t1 MTR_5g096980 41.026 780 424 12 8 774 7 763 0.0 595
MS.gene018791.t1 MTR_4g023250 67.692 130 40 1 644 773 1 128 5.53e-54 182
MS.gene018791.t1 MTR_4g023230 50.000 122 46 1 561 682 49 155 2.76e-32 123
MS.gene018791.t1 MTR_4g023390 50.962 104 29 1 647 750 16 97 3.33e-25 100
MS.gene018791.t1 MTR_4g023240 66.667 60 20 0 495 554 10 69 1.74e-20 86.3
MS.gene018791.t1 MTR_7g052280 54.430 79 11 3 248 325 1 55 1.65e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018791.t1 AT3G57880 91.473 774 65 1 1 774 1 773 0.0 1492
MS.gene018791.t1 AT3G57880 91.473 774 65 1 1 774 1 773 0.0 1492
MS.gene018791.t1 AT3G57880 91.473 774 65 1 1 774 1 773 0.0 1492
MS.gene018791.t1 AT3G57880 91.473 774 65 1 1 774 1 773 0.0 1492
MS.gene018791.t1 AT1G51570 88.660 776 86 2 1 774 1 776 0.0 1446
MS.gene018791.t1 AT5G12970 81.419 775 137 4 1 774 1 769 0.0 1315
MS.gene018791.t1 AT5G06850 68.662 785 228 8 7 774 11 794 0.0 1156
MS.gene018791.t1 AT4G11610 67.224 778 242 5 6 774 238 1011 0.0 1130
MS.gene018791.t1 AT4G11610 67.224 778 242 5 6 774 101 874 0.0 1129
MS.gene018791.t1 AT4G11610 67.224 778 242 5 6 774 234 1007 0.0 1129
MS.gene018791.t1 AT5G48060 65.897 780 252 8 7 774 259 1036 0.0 1104
MS.gene018791.t1 AT1G22610 66.076 790 247 9 1 774 245 1029 0.0 1079
MS.gene018791.t1 AT4G00700 59.207 782 304 6 6 774 227 1006 0.0 969
MS.gene018791.t1 AT4G00700 59.207 782 304 6 6 774 227 1006 0.0 969
MS.gene018791.t1 AT3G61300 58.869 778 291 13 4 774 217 972 0.0 946
MS.gene018791.t1 AT1G04150 58.354 790 288 14 8 774 241 1012 0.0 927
MS.gene018791.t1 AT4G20080 58.290 772 304 11 9 774 15 774 0.0 924
MS.gene018791.t1 AT1G74720 52.506 798 341 13 2 774 297 1081 0.0 824
MS.gene018791.t1 AT3G03680 52.734 768 314 15 32 774 274 1017 0.0 783
MS.gene018791.t1 AT5G17980 48.810 756 356 12 30 774 314 1049 0.0 748
MS.gene018791.t1 AT5G03435 40.927 777 402 25 7 768 6 740 3.06e-168 503
MS.gene018791.t1 AT3G61720 38.861 808 436 21 7 774 6 795 5.47e-167 502
MS.gene018791.t1 AT5G03435 43.154 577 293 17 7 574 6 556 9.87e-141 426
MS.gene018791.t1 AT5G44760 51.000 400 149 9 8 400 5 364 1.74e-123 379
MS.gene018791.t1 AT5G44760 36.496 137 38 1 540 676 364 451 7.61e-20 94.0
MS.gene018791.t1 AT1G03370 28.980 245 155 11 41 281 3 232 9.38e-13 72.4
MS.gene018791.t1 AT1G03370 28.980 245 155 11 41 281 3 232 1.07e-12 72.4

Find 225 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATTCCTTTGCAGTTTA+TGG 0.100742 1.2:-39202434 MS.gene018791:CDS
TCATATCTTGTTTATAATAT+TGG 0.175025 1.2:-39201474 MS.gene018791:CDS
ACCTCTTCCTGATTGGAATT+TGG 0.179060 1.2:-39201412 MS.gene018791:CDS
GCTTATTGTGTAGCGAAATA+TGG 0.253558 1.2:-39202121 MS.gene018791:CDS
TGAATCAGAACTGTAGTAAT+TGG 0.261944 1.2:+39201494 None:intergenic
GACTAATTGCTGCGGGAAAA+TGG 0.273762 1.2:-39201544 MS.gene018791:CDS
CATATGAGGGTTTGTTTAGA+AGG 0.275537 1.2:-39202304 MS.gene018791:CDS
TGTGGCGCCAAAGGACTATC+TGG 0.282405 1.2:+39202889 None:intergenic
CCCAAGTGGTGTGAAGAAAA+TGG 0.290205 1.2:-39201852 MS.gene018791:CDS
CTCCTAAGCTTTGGTATTTG+AGG 0.293908 1.2:-39202696 MS.gene018791:CDS
GCCAAACAGCTCTGGAAATC+TGG 0.301858 1.2:-39202226 MS.gene018791:CDS
CGGTGCCGCTTAATTTCTTC+AGG 0.307382 1.2:-39201016 MS.gene018791:CDS
GCATCCGAGTGCCAAGCTTC+TGG 0.322766 1.2:+39202775 None:intergenic
TAGAAAGGGTGATAAGGTTA+AGG 0.328443 1.2:-39202848 MS.gene018791:CDS
AGAAGGTGGTTATCATGTTT+TGG 0.333272 1.2:-39202287 MS.gene018791:CDS
CCCAATACTTCTTCTTTGTT+CGG 0.334931 1.2:+39202463 None:intergenic
GAAAAGCATATCATTATAGA+AGG 0.340696 1.2:-39202364 MS.gene018791:CDS
TTGGAATTTGGCACTATAGA+TGG 0.341735 1.2:-39201400 MS.gene018791:CDS
TTTCTCGAAGGACCGGCTTC+AGG 0.344206 1.2:-39203013 MS.gene018791:CDS
GCAAACACCTGATTCCATTC+AGG 0.344863 1.2:+39203036 None:intergenic
CTTTGGCGCCACAATGGTAT+AGG 0.349940 1.2:-39202879 MS.gene018791:CDS
GAAGGACCGGCTTCAGGCCT+CGG 0.355700 1.2:-39203007 MS.gene018791:CDS
TCCAGAGCTGTTTGGCCGTT+GGG 0.357398 1.2:+39202233 None:intergenic
CCGATGCTCTTGCAAATATT+AGG 0.362741 1.2:-39202735 MS.gene018791:CDS
GGTTCGATCAAATTTGCAAT+TGG 0.369813 1.2:-39201523 MS.gene018791:CDS
CCGAACAAAGAAGAAGTATT+GGG 0.371136 1.2:-39202463 MS.gene018791:CDS
TTCCTTTACCTCTTCCTGAT+TGG 0.374360 1.2:-39201419 MS.gene018791:CDS
CCTTTATGTGAGGGTTGTTA+AGG 0.377947 1.2:-39203166 MS.gene018791:CDS
GTTAAGCTCGGGAACTATAA+AGG 0.383225 1.2:-39203090 MS.gene018791:CDS
TTTATTTATCTCCTAAGCTT+TGG 0.384714 1.2:-39202705 MS.gene018791:CDS
TTTGCACCTCCAGCTTTGTC+AGG 0.385021 1.2:+39201965 None:intergenic
TCCTAAGCTTTGGTATTTGA+GGG 0.385923 1.2:-39202695 MS.gene018791:CDS
GGCTAATTTCTTCAGAATCA+TGG 0.388398 1.2:-39201579 MS.gene018791:CDS
CGCGACCGTCTGACATTGTT+CGG 0.395763 1.2:-39201280 MS.gene018791:CDS
CAGCTCTGGAAATCTGGAAT+TGG 0.397726 1.2:-39202220 MS.gene018791:CDS
ACAAACAGTGCCGTTGCTCT+TGG 0.398892 1.2:+39201152 None:intergenic
GAGAGCCGAGTGTCCATGTT+AGG 0.399650 1.2:+39201362 None:intergenic
CCTTAACAACCCTCACATAA+AGG 0.412120 1.2:+39203166 None:intergenic
CGTTGCTGCGGAACCATTTG+AGG 0.412932 1.2:-39202521 MS.gene018791:CDS
GAGAGTTGATGCTGGCTGTT+TGG 0.415016 1.2:-39202825 MS.gene018791:CDS
GCCCAACGGCCAAACAGCTC+TGG 0.415222 1.2:-39202234 MS.gene018791:CDS
GGAATTGGTGTTCTTGAAGT+TGG 0.415516 1.2:-39202205 MS.gene018791:CDS
TTTGAATGAGGTTCCGAAAC+GGG 0.416032 1.2:-39202917 MS.gene018791:CDS
TCGGATGCCGCGACTGTTAG+TGG 0.420415 1.2:-39202760 MS.gene018791:CDS
GGGTGTATATAGTGCATCTT+TGG 0.421466 1.2:+39201752 None:intergenic
TTGCCTTCAAAGGATGTTAC+CGG 0.422723 1.2:-39203135 MS.gene018791:CDS
TTGCAAGTAGGATTCATATG+AGG 0.423889 1.2:-39202318 MS.gene018791:CDS
TCTTTCAACAGAAAATCTTC+AGG 0.424219 1.2:+39203270 None:intergenic
TGTCAGACGGTCGCGAAGTC+GGG 0.427478 1.2:+39201288 None:intergenic
AGACTTACAGCCAACTGATA+AGG 0.432910 1.2:-39202653 MS.gene018791:CDS
GGCTAAGGATTTGCCTTCAA+AGG 0.432921 1.2:-39203145 MS.gene018791:CDS
CATCTGCTCAACAAGGTCAT+AGG 0.434978 1.2:+39203194 None:intergenic
GGCTGCAGTCTTTGCTGAGC+TGG 0.435790 1.2:-39201181 MS.gene018791:CDS
AAAATCAGCGGCTCCTCAAA+TGG 0.439031 1.2:+39202508 None:intergenic
TTCCAGAGCTGTTTGGCCGT+TGG 0.439868 1.2:+39202232 None:intergenic
GTATAGGTTGGAGGATAGAA+AGG 0.443612 1.2:-39202863 MS.gene018791:CDS
AACCAATCCTGAATGGAATC+AGG 0.445149 1.2:-39203043 MS.gene018791:CDS
CGCTGAGCCACCGCTGAGAA+AGG 0.446361 1.2:-39201660 MS.gene018791:CDS
TTCCTTTGCAGTTTATGGAC+AGG 0.446836 1.2:-39202429 MS.gene018791:CDS
TCCAGATTTCCAGAGCTGTT+TGG 0.447417 1.2:+39202225 None:intergenic
ATCACAAACCGGTGAATACT+AGG 0.448394 1.2:-39202399 MS.gene018791:CDS
AAGAAATTAAATTTGCAAGT+AGG 0.449686 1.2:-39202330 MS.gene018791:CDS
CACCTGATTCCATTCAGGAT+TGG 0.452685 1.2:+39203041 None:intergenic
AGTTGGGATATTGAGTGCTC+AGG 0.452833 1.2:-39202188 MS.gene018791:CDS
GTTGATGCTGGCTGTTTGGA+TGG 0.455860 1.2:-39202821 MS.gene018791:CDS
CTTATTGTGTAGCGAAATAT+GGG 0.456005 1.2:-39202120 MS.gene018791:CDS
GACTTACAGCCAACTGATAA+GGG 0.456275 1.2:-39202652 MS.gene018791:CDS
GAATTGGTGTTCTTGAAGTT+GGG 0.456895 1.2:-39202204 MS.gene018791:CDS
CCGGCTTCAGGCCTCGGTGT+TGG 0.457897 1.2:-39203001 MS.gene018791:CDS
GCTTCAGGCCTCGGTGTTGG+AGG 0.458158 1.2:-39202998 MS.gene018791:CDS
AACTCTTCATCAAGTTCATC+CGG 0.458916 1.2:+39201320 None:intergenic
TTCATCCGGATGAGCTGAAT+CGG 0.463142 1.2:+39201334 None:intergenic
AGAAAGGGTGATAAGGTTAA+GGG 0.464699 1.2:-39202847 MS.gene018791:CDS
TATAGTGCCAAATTCCAATC+AGG 0.471795 1.2:+39201405 None:intergenic
ACAGACTGTGGTTGGTGACT+TGG 0.473594 1.2:-39201219 MS.gene018791:CDS
CCTTGCACTGTGATTACAAT+TGG 0.473689 1.2:-39202016 MS.gene018791:CDS
CGAGCTGGCTAACGGTCAAC+GGG 0.475727 1.2:+39201732 None:intergenic
ATTCAAGGATTGGTAAGGTA+AGG 0.476487 1.2:-39201940 MS.gene018791:CDS
GAAAATGGGTGAAATTCAAT+TGG 0.477497 1.2:-39201837 MS.gene018791:CDS
ACTGTTGGTAAGATAAGTTC+AGG 0.477704 1.2:+39201443 None:intergenic
TGTGAGGGTTGTTAAGGCTA+AGG 0.478542 1.2:-39203160 MS.gene018791:CDS
GGAGGATAGAAAGGGTGATA+AGG 0.479059 1.2:-39202854 MS.gene018791:CDS
GCTAATTTCTTCAGAATCAT+GGG 0.479725 1.2:-39201578 MS.gene018791:CDS
GTTGGTGACTTGGCTACTCA+AGG 0.483990 1.2:-39201209 MS.gene018791:CDS
TTCCAATCAGGAAGAGGTAA+AGG 0.484097 1.2:+39201417 None:intergenic
GGCTGTTTGGATGGGTACAC+AGG 0.485124 1.2:-39202812 MS.gene018791:CDS
CTGGAGGTGCAAAAGATTCA+AGG 0.487820 1.2:-39201955 MS.gene018791:CDS
ATGAAGCATTTCCAGAAGCT+TGG 0.489119 1.2:-39202786 MS.gene018791:CDS
TTTGAGGGTTAATGTGATTG+AGG 0.490505 1.2:-39202680 MS.gene018791:CDS
CGGTCAGAAGGGCCACAACT+TGG 0.491080 1.2:+39201084 None:intergenic
GTTGTGAAGGACGACTTCAT+TGG 0.491403 1.2:-39202955 MS.gene018791:CDS
CTCAACAAGGTCATAGGTGC+TGG 0.491827 1.2:+39203200 None:intergenic
GTTGAGTATATGCTTGATGT+TGG 0.492238 1.2:-39201632 MS.gene018791:CDS
AAAGAGACCAAACCCCATCT+TGG 0.497107 1.2:-39203252 MS.gene018791:CDS
ATGTCTCAACACATAAATTC+CGG 0.498537 1.2:+39201064 None:intergenic
TCCATGTTAGGAGGGTGTCT+TGG 0.501157 1.2:+39201374 None:intergenic
CAAGTTGTGGCCCTTCTGAC+CGG 0.503387 1.2:-39201083 MS.gene018791:CDS
TCCGAACAAAGAAGAAGTAT+TGG 0.503767 1.2:-39202464 MS.gene018791:CDS
TCACGCCGATTCAGCTCATC+CGG 0.505053 1.2:-39201339 MS.gene018791:CDS
GATCGACTTAGAAGCATAGC+TGG 0.508615 1.2:-39201248 MS.gene018791:CDS
TTAGCCAGCTCGACAGTTTG+AGG 0.514684 1.2:-39201721 MS.gene018791:CDS
AACAGAAAATCTTCAGGCGG+TGG 0.514836 1.2:+39203276 None:intergenic
AGAAGAAAACCAATCCTGAA+TGG 0.515488 1.2:-39203050 MS.gene018791:CDS
TGCAAGTAGGATTCATATGA+GGG 0.516612 1.2:-39202317 MS.gene018791:CDS
ACCCTCAAATACCAAAGCTT+AGG 0.516986 1.2:+39202694 None:intergenic
CCTAATATTTGCAAGAGCAT+CGG 0.518070 1.2:+39202735 None:intergenic
CTTCCGGTAACATCCTTTGA+AGG 0.519491 1.2:+39203132 None:intergenic
GGTGCAAAAGATTCAAGGAT+TGG 0.520817 1.2:-39201950 MS.gene018791:CDS
TCGAGCTGGCTAACGGTCAA+CGG 0.520943 1.2:+39201731 None:intergenic
GTGGCGCCAAAGGACTATCT+GGG 0.523648 1.2:+39202890 None:intergenic
GTTGGGATATTGAGTGCTCA+GGG 0.525396 1.2:-39202187 MS.gene018791:CDS
CACCACTTGGGTGAAGAACT+AGG 0.526449 1.2:+39201864 None:intergenic
AGCCGAGTGTCCATGTTAGG+AGG 0.527424 1.2:+39201365 None:intergenic
TTGCATGGTCCTGACAAAGC+TGG 0.527750 1.2:-39201974 MS.gene018791:CDS
GCCAAATTCCAATCAGGAAG+AGG 0.528138 1.2:+39201411 None:intergenic
ATGAGGGTTTGTTTAGAAGG+TGG 0.530189 1.2:-39202301 MS.gene018791:CDS
ATGTCAGACGGTCGCGAAGT+CGG 0.531646 1.2:+39201287 None:intergenic
ACACATAAATTCCGGTCAGA+AGG 0.532406 1.2:+39201072 None:intergenic
AGCGTACGGATCACAACTTC+CGG 0.532790 1.2:+39203116 None:intergenic
AGCATGCAATCAGTTCTTGC+AGG 0.532832 1.2:+39200987 None:intergenic
CCAAGTGGTGTGAAGAAAAT+GGG 0.533679 1.2:-39201851 MS.gene018791:CDS
GACTTAGAAGCATAGCTGGC+AGG 0.533834 1.2:-39201244 MS.gene018791:CDS
ATTTGAATGAGGTTCCGAAA+CGG 0.535448 1.2:-39202918 MS.gene018791:CDS
TTCTTCTCATACTCCACATG+TGG 0.540825 1.2:+39201606 None:intergenic
AAGAAATTAAGCGGCACCGA+CGG 0.541607 1.2:+39201020 None:intergenic
CACATAAATTCCGGTCAGAA+GGG 0.542177 1.2:+39201073 None:intergenic
CAGGAGACTCGATCACAAAC+CGG 0.542766 1.2:-39202410 MS.gene018791:CDS
CTATACCATTGTGGCGCCAA+AGG 0.545517 1.2:+39202880 None:intergenic
GGACTAGAATCTCTCAGAGC+AGG 0.546735 1.2:-39202579 MS.gene018791:CDS
AGAAGGGCCACAACTTGGAA+TGG 0.547838 1.2:+39201089 None:intergenic
TGTTTGCTTTCTCGAAGGAC+CGG 0.550835 1.2:-39203020 MS.gene018791:CDS
GTGAAGAACTAGGAGTGGAT+AGG 0.551635 1.2:+39201874 None:intergenic
GCCAAGACACCCTCCTAACA+TGG 0.551812 1.2:-39201375 MS.gene018791:CDS
GGCGCCACAATGGTATAGGT+TGG 0.552049 1.2:-39202875 MS.gene018791:CDS
CCGTACGCTGAAGTTAAGCT+CGG 0.557320 1.2:-39203102 MS.gene018791:CDS
TGTGTGGTTTGATTTGAATG+AGG 0.557487 1.2:-39202929 MS.gene018791:CDS
TGCCGCTTAATTTCTTCAGG+AGG 0.557905 1.2:-39201013 MS.gene018791:CDS
GGATTTGATGTTCGTTGCTG+CGG 0.557925 1.2:-39202533 MS.gene018791:CDS
TAGCGAAATATGGGCAGAAG+TGG 0.558621 1.2:-39202111 MS.gene018791:CDS
AAAAGATTCAAGGATTGGTA+AGG 0.560457 1.2:-39201945 MS.gene018791:CDS
AGACCAAACCCCATCTTGGA+GGG 0.563491 1.2:-39203248 MS.gene018791:CDS
CCAACACCGAGGCCTGAAGC+CGG 0.564103 1.2:+39203001 None:intergenic
GAGACCAAACCCCATCTTGG+AGG 0.564193 1.2:-39203249 MS.gene018791:CDS
ACGACTTCATTGGTCGTGTG+TGG 0.564266 1.2:-39202945 MS.gene018791:CDS
TTGATGCTGGCTGTTTGGAT+GGG 0.564934 1.2:-39202820 MS.gene018791:CDS
TTTGATAATTGTCATTTGCA+TGG 0.564967 1.2:-39201989 MS.gene018791:CDS
GATGCCTCAAACTGTCGAGC+TGG 0.566280 1.2:+39201717 None:intergenic
GCCACAATGGTATAGGTTGG+AGG 0.566567 1.2:-39202872 MS.gene018791:CDS
ATTTCCAGAAGCTTGGCACT+CGG 0.566792 1.2:-39202779 MS.gene018791:CDS
CCGAGCTTAACTTCAGCGTA+CGG 0.569596 1.2:+39203102 None:intergenic
GGTGGAATGAGCAATATACT+TGG 0.572552 1.2:-39202051 MS.gene018791:CDS
TATAGGTTGGAGGATAGAAA+GGG 0.576864 1.2:-39202862 MS.gene018791:CDS
AAAAGCATATCATTATAGAA+GGG 0.577524 1.2:-39202363 MS.gene018791:CDS
TTGAGTGGACTAATTGCTGC+GGG 0.577897 1.2:-39201551 MS.gene018791:CDS
TTAAACCACCTAGTATTCAC+CGG 0.579069 1.2:+39202391 None:intergenic
CTCCTAGTTCTTCACCCAAG+TGG 0.579462 1.2:-39201866 MS.gene018791:CDS
CAAACTGTCGAGCTGGCTAA+CGG 0.580833 1.2:+39201724 None:intergenic
TTGGTGACTTGGCTACTCAA+GGG 0.582918 1.2:-39201208 MS.gene018791:CDS
TGTGACTCCATTCCAAGTTG+TGG 0.583105 1.2:-39201096 MS.gene018791:CDS
GGGTATCTACCCTTATCAGT+TGG 0.583700 1.2:+39202643 None:intergenic
ATCAAATCCTCGTTCCACAA+TGG 0.587304 1.2:+39202547 None:intergenic
ACCAAACCCCATCTTGGAGG+GGG 0.588344 1.2:-39203246 MS.gene018791:CDS
TCAGGTGTTTGCTTTCTCGA+AGG 0.590633 1.2:-39203025 MS.gene018791:CDS
GGCAGAAGTGGATTCGAACA+AGG 0.592797 1.2:-39202099 MS.gene018791:CDS
CTCCTGTCCATAAACTGCAA+AGG 0.598615 1.2:+39202427 None:intergenic
CTGGCGTGATCCAAGAGCAA+CGG 0.599242 1.2:-39201162 MS.gene018791:CDS
AAAGCATATCATTATAGAAG+GGG 0.601603 1.2:-39202362 MS.gene018791:CDS
TTGATGTTGGTTCCCACATG+TGG 0.601847 1.2:-39201619 MS.gene018791:CDS
AACTGATAAGGGTAGATACC+CGG 0.605268 1.2:-39202641 MS.gene018791:CDS
AAGAGGTAAAGGAAAACTGT+TGG 0.606111 1.2:+39201428 None:intergenic
CCAATTGTAATCACAGTGCA+AGG 0.607117 1.2:+39202016 None:intergenic
ACTACCTCCTTTCTCAGCGG+TGG 0.608379 1.2:+39201653 None:intergenic
ACCCTCCTAACATGGACACT+CGG 0.608381 1.2:-39201367 MS.gene018791:CDS
GATGCAATACCTTTATGTGA+GGG 0.612976 1.2:-39203175 MS.gene018791:CDS
CGTACGCTGAAGTTAAGCTC+GGG 0.613305 1.2:-39203101 MS.gene018791:CDS
GACCAAACCCCATCTTGGAG+GGG 0.614269 1.2:-39203247 MS.gene018791:CDS
TGGTGACTTGGCTACTCAAG+GGG 0.614474 1.2:-39201207 MS.gene018791:CDS
GGAAGCTTATGACGGAACCT+CGG 0.615117 1.2:+39201041 None:intergenic
GGAGGTTACTGTGAAAGATA+AGG 0.615500 1.2:-39202980 MS.gene018791:CDS
TTCAACAGAAAATCTTCAGG+CGG 0.617196 1.2:+39203273 None:intergenic
AGAATCATGGGAGTATTGAG+TGG 0.619315 1.2:-39201566 MS.gene018791:CDS
AGATGCAATACCTTTATGTG+AGG 0.619566 1.2:-39203176 MS.gene018791:CDS
ACTTGGCTACTCAAGGGGAA+AGG 0.619911 1.2:-39201202 MS.gene018791:CDS
CAGCAGTGATCTTCGCCCAA+CGG 0.622948 1.2:-39202248 MS.gene018791:CDS
GCCGAGTGTCCATGTTAGGA+GGG 0.626241 1.2:+39201366 None:intergenic
GAATTTGGCACTATAGATGG+AGG 0.626699 1.2:-39201397 MS.gene018791:CDS
TTTGAGCAGCGAAAATGCAG+AGG 0.627054 1.2:-39203299 None:intergenic
GTGGAATGAGCAATATACTT+GGG 0.627653 1.2:-39202050 MS.gene018791:CDS
CTTGGGTGAAGAACTAGGAG+TGG 0.630605 1.2:+39201869 None:intergenic
TGAGCCACCGCTGAGAAAGG+AGG 0.630758 1.2:-39201657 MS.gene018791:CDS
GGTTAAGGGAGAGTTGATGC+TGG 0.631046 1.2:-39202833 MS.gene018791:CDS
GGTATTGCATCTGCTCAACA+AGG 0.633340 1.2:+39203187 None:intergenic
TGGCGCCAAAGGACTATCTG+GGG 0.634206 1.2:+39202891 None:intergenic
TAGTGCATCTTTGGCAACAG+AGG 0.634644 1.2:+39201761 None:intergenic
ATAGTCCTTTGGCGCCACAA+TGG 0.637482 1.2:-39202885 MS.gene018791:CDS
GCACCGACGGAAGCTTATGA+CGG 0.638901 1.2:+39201033 None:intergenic
TCCTCCAACCTATACCATTG+TGG 0.643504 1.2:+39202871 None:intergenic
TTGATAGCTTTATGCCGAGG+TGG 0.644610 1.2:-39202069 MS.gene018791:CDS
GAATGAGCAATATACTTGGG+AGG 0.645094 1.2:-39202047 MS.gene018791:CDS
GAAAGATAAGGATGTTGTGA+AGG 0.645624 1.2:-39202968 MS.gene018791:CDS
CTCATCCGAACAATGTCAGA+CGG 0.649695 1.2:+39201275 None:intergenic
GTGGAGTATGAGAAGAAGCA+AGG 0.650662 1.2:-39201600 MS.gene018791:CDS
ATCGGTTCCACTAACAGTCG+CGG 0.651678 1.2:+39202753 None:intergenic
AGCCTCCTGAAGAAATTAAG+CGG 0.651985 1.2:+39201011 None:intergenic
GTTCCGTCATAAGCTTCCGT+CGG 0.653799 1.2:-39201036 MS.gene018791:CDS
GTGAAATTCAATTGGCTGTG+AGG 0.654400 1.2:-39201829 MS.gene018791:CDS
GCAGGAGTATCAATCCATTG+TGG 0.657557 1.2:-39202561 MS.gene018791:CDS
GGAACTATAAAGGAACTACT+CGG 0.658774 1.2:-39203080 MS.gene018791:CDS
ATTGAGTGGACTAATTGCTG+CGG 0.661101 1.2:-39201552 MS.gene018791:CDS
GGCAGGATACAGACTGTGGT+TGG 0.661626 1.2:-39201227 MS.gene018791:CDS
CTACTCAGATAGTTTCAATG+AGG 0.663957 1.2:-39201691 MS.gene018791:CDS
TCATTGATAGCTTTATGCCG+AGG 0.666881 1.2:-39202072 MS.gene018791:CDS
TATCAATCCATTGTGGAACG+AGG 0.672925 1.2:-39202554 MS.gene018791:CDS
CGAACAAAGAAGAAGTATTG+GGG 0.685152 1.2:-39202462 MS.gene018791:CDS
TCTTCCACACTCAAAATCAG+CGG 0.687134 1.2:+39202496 None:intergenic
TCTTCTCATACTCCACATGT+GGG 0.689277 1.2:+39201607 None:intergenic
TTTATGTGTTGAGACATCCG+AGG 0.696759 1.2:-39201058 MS.gene018791:CDS
AGCTGGCAGGATACAGACTG+TGG 0.697923 1.2:-39201231 MS.gene018791:CDS
GGCGCCAAAGGACTATCTGG+GGG 0.701939 1.2:+39202892 None:intergenic
ACAAAGAAGAAGTATTGGGG+AGG 0.704686 1.2:-39202459 MS.gene018791:CDS
CATGGTCCTGACAAAGCTGG+AGG 0.704809 1.2:-39201971 MS.gene018791:CDS
GTATATTGCTCATTCCACCT+CGG 0.716433 1.2:+39202055 None:intergenic
TCAACTACCTCCTTTCTCAG+CGG 0.739237 1.2:+39201650 None:intergenic
CACAGTAACCTCCAACACCG+AGG 0.741552 1.2:+39202990 None:intergenic
ACAAACCGGTGAATACTAGG+TGG 0.763717 1.2:-39202396 MS.gene018791:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATATCTTGTTTATAATAT+TGG - chr1.2:39202794-39202813 MS.gene018791:CDS 15.0%
!! AAGAAATTAAATTTGCAAGT+AGG - chr1.2:39201938-39201957 MS.gene018791:CDS 20.0%
!!! AAAAGCATATCATTATAGAA+GGG - chr1.2:39201905-39201924 MS.gene018791:CDS 20.0%
! AAAGCATATCATTATAGAAG+GGG - chr1.2:39201906-39201925 MS.gene018791:CDS 25.0%
! TTTATTTATCTCCTAAGCTT+TGG - chr1.2:39201563-39201582 MS.gene018791:CDS 25.0%
!! GAAAAGCATATCATTATAGA+AGG - chr1.2:39201904-39201923 MS.gene018791:CDS 25.0%
!! TTTGATAATTGTCATTTGCA+TGG - chr1.2:39202279-39202298 MS.gene018791:CDS 25.0%
ATGAAAAATAAAGATGGGAG+GGG - chr1.2:39202114-39202133 MS.gene018791:CDS 30.0%
ATGCCGATGAAAAATAAAGA+TGG - chr1.2:39202108-39202127 MS.gene018791:CDS 30.0%
ATGTCTCAACACATAAATTC+CGG + chr1.2:39203207-39203226 None:intergenic 30.0%
CTTATTGTGTAGCGAAATAT+GGG - chr1.2:39202148-39202167 MS.gene018791:CDS 30.0%
GAAAATGGGTGAAATTCAAT+TGG - chr1.2:39202431-39202450 MS.gene018791:CDS 30.0%
GATGAAAAATAAAGATGGGA+GGG - chr1.2:39202113-39202132 MS.gene018791:CDS 30.0%
GCTAATTTCTTCAGAATCAT+GGG - chr1.2:39202690-39202709 MS.gene018791:CDS 30.0%
TCTTTCAACAGAAAATCTTC+AGG + chr1.2:39201001-39201020 None:intergenic 30.0%
TGAATCAGAACTGTAGTAAT+TGG + chr1.2:39202777-39202796 None:intergenic 30.0%
TGCCGATGAAAAATAAAGAT+GGG - chr1.2:39202109-39202128 MS.gene018791:CDS 30.0%
! AAAAGATTCAAGGATTGGTA+AGG - chr1.2:39202323-39202342 MS.gene018791:CDS 30.0%
! AGTTTTTGTGAAGGCTATTT+TGG - chr1.2:39201651-39201670 MS.gene018791:CDS 30.0%
!! GTTTTTGTGAAGGCTATTTT+GGG - chr1.2:39201652-39201671 MS.gene018791:CDS 30.0%
!! TTTTTGTGAAGGCTATTTTG+GGG - chr1.2:39201653-39201672 MS.gene018791:CDS 30.0%
!!! CTCCCATCTTTATTTTTCAT+CGG + chr1.2:39202114-39202133 None:intergenic 30.0%
AACTCTTCATCAAGTTCATC+CGG + chr1.2:39202951-39202970 None:intergenic 35.0%
AAGAGGTAAAGGAAAACTGT+TGG + chr1.2:39202843-39202862 None:intergenic 35.0%
AGAAAGGGTGATAAGGTTAA+GGG - chr1.2:39201421-39201440 MS.gene018791:CDS 35.0%
AGAAGAAAACCAATCCTGAA+TGG - chr1.2:39201218-39201237 MS.gene018791:CDS 35.0%
AGATGCAATACCTTTATGTG+AGG - chr1.2:39201092-39201111 MS.gene018791:CDS 35.0%
ATAGCCTTCACAAAAACTTC+CGG + chr1.2:39201649-39201668 None:intergenic 35.0%
ATTTGAATGAGGTTCCGAAA+CGG - chr1.2:39201350-39201369 MS.gene018791:CDS 35.0%
CCCAATACTTCTTCTTTGTT+CGG + chr1.2:39201808-39201827 None:intergenic 35.0%
CGATGAAAAATAAAGATGGG+AGG - chr1.2:39202112-39202131 MS.gene018791:CDS 35.0%
CTACTCAGATAGTTTCAATG+AGG - chr1.2:39202577-39202596 MS.gene018791:CDS 35.0%
GAAAGATAAGGATGTTGTGA+AGG - chr1.2:39201300-39201319 MS.gene018791:CDS 35.0%
GATGCAATACCTTTATGTGA+GGG - chr1.2:39201093-39201112 MS.gene018791:CDS 35.0%
GCTTATTGTGTAGCGAAATA+TGG - chr1.2:39202147-39202166 MS.gene018791:CDS 35.0%
GGAACTATAAAGGAACTACT+CGG - chr1.2:39201188-39201207 MS.gene018791:CDS 35.0%
GGCTAATTTCTTCAGAATCA+TGG - chr1.2:39202689-39202708 MS.gene018791:CDS 35.0%
GGTTCGATCAAATTTGCAAT+TGG - chr1.2:39202745-39202764 MS.gene018791:CDS 35.0%
GTGGAATGAGCAATATACTT+GGG - chr1.2:39202218-39202237 MS.gene018791:CDS 35.0%
GTTGAGTATATGCTTGATGT+TGG - chr1.2:39202636-39202655 MS.gene018791:CDS 35.0%
TAGAAAGGGTGATAAGGTTA+AGG - chr1.2:39201420-39201439 MS.gene018791:CDS 35.0%
TATAGTGCCAAATTCCAATC+AGG + chr1.2:39202866-39202885 None:intergenic 35.0%
TGAAAAATAAAGATGGGAGG+GGG - chr1.2:39202115-39202134 MS.gene018791:CDS 35.0%
TGCAAGTAGGATTCATATGA+GGG - chr1.2:39201951-39201970 MS.gene018791:CDS 35.0%
TGCTATTCCTTTGCAGTTTA+TGG - chr1.2:39201834-39201853 MS.gene018791:CDS 35.0%
TTAAACCACCTAGTATTCAC+CGG + chr1.2:39201880-39201899 None:intergenic 35.0%
TTCAACAGAAAATCTTCAGG+CGG + chr1.2:39200998-39201017 None:intergenic 35.0%
TTGCAAGTAGGATTCATATG+AGG - chr1.2:39201950-39201969 MS.gene018791:CDS 35.0%
TTGGAATTTGGCACTATAGA+TGG - chr1.2:39202868-39202887 MS.gene018791:CDS 35.0%
TTTGAGGGTTAATGTGATTG+AGG - chr1.2:39201588-39201607 MS.gene018791:CDS 35.0%
! ACTGTTGGTAAGATAAGTTC+AGG + chr1.2:39202828-39202847 None:intergenic 35.0%
! AGAAGGTGGTTATCATGTTT+TGG - chr1.2:39201981-39202000 MS.gene018791:CDS 35.0%
! ATTCAAGGATTGGTAAGGTA+AGG - chr1.2:39202328-39202347 MS.gene018791:CDS 35.0%
! CATATGAGGGTTTGTTTAGA+AGG - chr1.2:39201964-39201983 MS.gene018791:CDS 35.0%
! CCTAATATTTGCAAGAGCAT+CGG + chr1.2:39201536-39201555 None:intergenic 35.0%
! GAATTGGTGTTCTTGAAGTT+GGG - chr1.2:39202064-39202083 MS.gene018791:CDS 35.0%
! TATAGGTTGGAGGATAGAAA+GGG - chr1.2:39201406-39201425 MS.gene018791:CDS 35.0%
! TCCGAACAAAGAAGAAGTAT+TGG - chr1.2:39201804-39201823 MS.gene018791:CDS 35.0%
! TCCTAAGCTTTGGTATTTGA+GGG - chr1.2:39201573-39201592 MS.gene018791:CDS 35.0%
!! CCGAACAAAGAAGAAGTATT+GGG - chr1.2:39201805-39201824 MS.gene018791:CDS 35.0%
!! CGAACAAAGAAGAAGTATTG+GGG - chr1.2:39201806-39201825 MS.gene018791:CDS 35.0%
!! TGTGTGGTTTGATTTGAATG+AGG - chr1.2:39201339-39201358 MS.gene018791:CDS 35.0%
AACCAATCCTGAATGGAATC+AGG - chr1.2:39201225-39201244 MS.gene018791:CDS 40.0%
AACTGATAAGGGTAGATACC+CGG - chr1.2:39201627-39201646 MS.gene018791:CDS 40.0%
ACACATAAATTCCGGTCAGA+AGG + chr1.2:39203199-39203218 None:intergenic 40.0%
ACCCTCAAATACCAAAGCTT+AGG + chr1.2:39201577-39201596 None:intergenic 40.0%
ACCTCTTCCTGATTGGAATT+TGG - chr1.2:39202856-39202875 MS.gene018791:CDS 40.0%
AGACTTACAGCCAACTGATA+AGG - chr1.2:39201615-39201634 MS.gene018791:CDS 40.0%
AGCCTCCTGAAGAAATTAAG+CGG + chr1.2:39203260-39203279 None:intergenic 40.0%
ATCAAATCCTCGTTCCACAA+TGG + chr1.2:39201724-39201743 None:intergenic 40.0%
ATCACAAACCGGTGAATACT+AGG - chr1.2:39201869-39201888 MS.gene018791:CDS 40.0%
CACATAAATTCCGGTCAGAA+GGG + chr1.2:39203198-39203217 None:intergenic 40.0%
CCAAGTGGTGTGAAGAAAAT+GGG - chr1.2:39202417-39202436 MS.gene018791:CDS 40.0%
CCAATTGTAATCACAGTGCA+AGG + chr1.2:39202255-39202274 None:intergenic 40.0%
CCGATGCTCTTGCAAATATT+AGG - chr1.2:39201533-39201552 MS.gene018791:CDS 40.0%
CCTTAACAACCCTCACATAA+AGG + chr1.2:39201105-39201124 None:intergenic 40.0%
CCTTGCACTGTGATTACAAT+TGG - chr1.2:39202252-39202271 MS.gene018791:CDS 40.0%
CCTTTATGTGAGGGTTGTTA+AGG - chr1.2:39201102-39201121 MS.gene018791:CDS 40.0%
GAATGAGCAATATACTTGGG+AGG - chr1.2:39202221-39202240 MS.gene018791:CDS 40.0%
GAATTTGGCACTATAGATGG+AGG - chr1.2:39202871-39202890 MS.gene018791:CDS 40.0%
GACTTACAGCCAACTGATAA+GGG - chr1.2:39201616-39201635 MS.gene018791:CDS 40.0%
GGAGGTTACTGTGAAAGATA+AGG - chr1.2:39201288-39201307 MS.gene018791:CDS 40.0%
GGGTGTATATAGTGCATCTT+TGG + chr1.2:39202519-39202538 None:intergenic 40.0%
GGTGCAAAAGATTCAAGGAT+TGG - chr1.2:39202318-39202337 MS.gene018791:CDS 40.0%
GGTGGAATGAGCAATATACT+TGG - chr1.2:39202217-39202236 MS.gene018791:CDS 40.0%
GTATATTGCTCATTCCACCT+CGG + chr1.2:39202216-39202235 None:intergenic 40.0%
GTGAAATTCAATTGGCTGTG+AGG - chr1.2:39202439-39202458 MS.gene018791:CDS 40.0%
GTTAAGCTCGGGAACTATAA+AGG - chr1.2:39201178-39201197 MS.gene018791:CDS 40.0%
TAGCCTTCACAAAAACTTCC+GGG + chr1.2:39201648-39201667 None:intergenic 40.0%
TATCAATCCATTGTGGAACG+AGG - chr1.2:39201714-39201733 MS.gene018791:CDS 40.0%
TCTTCCACACTCAAAATCAG+CGG + chr1.2:39201775-39201794 None:intergenic 40.0%
TCTTCTCATACTCCACATGT+GGG + chr1.2:39202664-39202683 None:intergenic 40.0%
TTCCAATCAGGAAGAGGTAA+AGG + chr1.2:39202854-39202873 None:intergenic 40.0%
TTCCTTTACCTCTTCCTGAT+TGG - chr1.2:39202849-39202868 MS.gene018791:CDS 40.0%
TTCCTTTGCAGTTTATGGAC+AGG - chr1.2:39201839-39201858 MS.gene018791:CDS 40.0%
TTCTTCTCATACTCCACATG+TGG + chr1.2:39202665-39202684 None:intergenic 40.0%
TTGCCTTCAAAGGATGTTAC+CGG - chr1.2:39201133-39201152 MS.gene018791:CDS 40.0%
TTTATGTGTTGAGACATCCG+AGG - chr1.2:39203210-39203229 MS.gene018791:CDS 40.0%
TTTGAATGAGGTTCCGAAAC+GGG - chr1.2:39201351-39201370 MS.gene018791:CDS 40.0%
! ATACCCGGAAGTTTTTGTGA+AGG - chr1.2:39201642-39201661 MS.gene018791:CDS 40.0%
! ATGAAGCATTTCCAGAAGCT+TGG - chr1.2:39201482-39201501 MS.gene018791:CDS 40.0%
! ATGAGGGTTTGTTTAGAAGG+TGG - chr1.2:39201967-39201986 MS.gene018791:CDS 40.0%
! CCATTTTCTTCACACCACTT+GGG + chr1.2:39202419-39202438 None:intergenic 40.0%
! CTCCTAAGCTTTGGTATTTG+AGG - chr1.2:39201572-39201591 MS.gene018791:CDS 40.0%
! GGAATTGGTGTTCTTGAAGT+TGG - chr1.2:39202063-39202082 MS.gene018791:CDS 40.0%
! GTATAGGTTGGAGGATAGAA+AGG - chr1.2:39201405-39201424 MS.gene018791:CDS 40.0%
!! ACAAAGAAGAAGTATTGGGG+AGG - chr1.2:39201809-39201828 MS.gene018791:CDS 40.0%
!! AGAATCATGGGAGTATTGAG+TGG - chr1.2:39202702-39202721 MS.gene018791:CDS 40.0%
!! ATTGAGTGGACTAATTGCTG+CGG - chr1.2:39202716-39202735 MS.gene018791:CDS 40.0%
!! TCATTGATAGCTTTATGCCG+AGG - chr1.2:39202196-39202215 MS.gene018791:CDS 40.0%
AAAATCAGCGGCTCCTCAAA+TGG + chr1.2:39201763-39201782 None:intergenic 45.0%
AAAGAGACCAAACCCCATCT+TGG - chr1.2:39201016-39201035 MS.gene018791:CDS 45.0%
AACAGAAAATCTTCAGGCGG+TGG + chr1.2:39200995-39201014 None:intergenic 45.0%
ACAAACCGGTGAATACTAGG+TGG - chr1.2:39201872-39201891 MS.gene018791:CDS 45.0%
AGCATGCAATCAGTTCTTGC+AGG + chr1.2:39203284-39203303 None:intergenic 45.0%
AGTTGGGATATTGAGTGCTC+AGG - chr1.2:39202080-39202099 MS.gene018791:CDS 45.0%
ATTTCCAGAAGCTTGGCACT+CGG - chr1.2:39201489-39201508 MS.gene018791:CDS 45.0%
CACCTGATTCCATTCAGGAT+TGG + chr1.2:39201230-39201249 None:intergenic 45.0%
CATCTGCTCAACAAGGTCAT+AGG + chr1.2:39201077-39201096 None:intergenic 45.0%
CCCAAGTGGTGTGAAGAAAA+TGG - chr1.2:39202416-39202435 MS.gene018791:CDS 45.0%
CTCATCCGAACAATGTCAGA+CGG + chr1.2:39202996-39203015 None:intergenic 45.0%
CTCCTGTCCATAAACTGCAA+AGG + chr1.2:39201844-39201863 None:intergenic 45.0%
CTTCCGGTAACATCCTTTGA+AGG + chr1.2:39201139-39201158 None:intergenic 45.0%
GACTAATTGCTGCGGGAAAA+TGG - chr1.2:39202724-39202743 MS.gene018791:CDS 45.0%
GCAAACACCTGATTCCATTC+AGG + chr1.2:39201235-39201254 None:intergenic 45.0%
GCCAAATTCCAATCAGGAAG+AGG + chr1.2:39202860-39202879 None:intergenic 45.0%
GGAGGATAGAAAGGGTGATA+AGG - chr1.2:39201414-39201433 MS.gene018791:CDS 45.0%
GGATTTGATGTTCGTTGCTG+CGG - chr1.2:39201735-39201754 MS.gene018791:CDS 45.0%
GGCTAAGGATTTGCCTTCAA+AGG - chr1.2:39201123-39201142 MS.gene018791:CDS 45.0%
GGGTATCTACCCTTATCAGT+TGG + chr1.2:39201628-39201647 None:intergenic 45.0%
GGTATTGCATCTGCTCAACA+AGG + chr1.2:39201084-39201103 None:intergenic 45.0%
GTGAAGAACTAGGAGTGGAT+AGG + chr1.2:39202397-39202416 None:intergenic 45.0%
GTGGAGTATGAGAAGAAGCA+AGG - chr1.2:39202668-39202687 MS.gene018791:CDS 45.0%
GTTGGGATATTGAGTGCTCA+GGG - chr1.2:39202081-39202100 MS.gene018791:CDS 45.0%
GTTGTGAAGGACGACTTCAT+TGG - chr1.2:39201313-39201332 MS.gene018791:CDS 45.0%
TAGCGAAATATGGGCAGAAG+TGG - chr1.2:39202157-39202176 MS.gene018791:CDS 45.0%
TAGTGCATCTTTGGCAACAG+AGG + chr1.2:39202510-39202529 None:intergenic 45.0%
TCAACTACCTCCTTTCTCAG+CGG + chr1.2:39202621-39202640 None:intergenic 45.0%
TCAGGTGTTTGCTTTCTCGA+AGG - chr1.2:39201243-39201262 MS.gene018791:CDS 45.0%
TCCAGATTTCCAGAGCTGTT+TGG + chr1.2:39202046-39202065 None:intergenic 45.0%
TCCTCCAACCTATACCATTG+TGG + chr1.2:39201400-39201419 None:intergenic 45.0%
TGTGACTCCATTCCAAGTTG+TGG - chr1.2:39203172-39203191 MS.gene018791:CDS 45.0%
TGTGAGGGTTGTTAAGGCTA+AGG - chr1.2:39201108-39201127 MS.gene018791:CDS 45.0%
TGTTTGCTTTCTCGAAGGAC+CGG - chr1.2:39201248-39201267 MS.gene018791:CDS 45.0%
TTCATCCGGATGAGCTGAAT+CGG + chr1.2:39202937-39202956 None:intergenic 45.0%
! AAGAAATTAAGCGGCACCGA+CGG + chr1.2:39203251-39203270 None:intergenic 45.0%
! AGATTTTTCCCCCTCCAAGA+TGG + chr1.2:39201033-39201052 None:intergenic 45.0%
! ATTTTTCCCCCTCCAAGATG+GGG + chr1.2:39201031-39201050 None:intergenic 45.0%
! CCCATTTTCTTCACACCACT+TGG + chr1.2:39202420-39202439 None:intergenic 45.0%
! CTGGAGGTGCAAAAGATTCA+AGG - chr1.2:39202313-39202332 MS.gene018791:CDS 45.0%
! GATCGACTTAGAAGCATAGC+TGG - chr1.2:39203020-39203039 MS.gene018791:CDS 45.0%
! GATTTTTCCCCCTCCAAGAT+GGG + chr1.2:39201032-39201051 None:intergenic 45.0%
! TGCCGCTTAATTTCTTCAGG+AGG - chr1.2:39203255-39203274 MS.gene018791:CDS 45.0%
! TTGATGCTGGCTGTTTGGAT+GGG - chr1.2:39201448-39201467 MS.gene018791:CDS 45.0%
! TTGGTGACTTGGCTACTCAA+GGG - chr1.2:39203060-39203079 MS.gene018791:CDS 45.0%
!! CAGCTCTGGAAATCTGGAAT+TGG - chr1.2:39202048-39202067 MS.gene018791:CDS 45.0%
!! GAAGGCTATTTTGGGGAATC+AGG - chr1.2:39201660-39201679 MS.gene018791:CDS 45.0%
!! GCAGGAGTATCAATCCATTG+TGG - chr1.2:39201707-39201726 MS.gene018791:CDS 45.0%
!! TTGAGTGGACTAATTGCTGC+GGG - chr1.2:39202717-39202736 MS.gene018791:CDS 45.0%
!! TTGATAGCTTTATGCCGAGG+TGG - chr1.2:39202199-39202218 MS.gene018791:CDS 45.0%
!! TTGATGTTGGTTCCCACATG+TGG - chr1.2:39202649-39202668 MS.gene018791:CDS 45.0%
!! TTTTGGGGAATCAGGCATTG+AGG - chr1.2:39201668-39201687 MS.gene018791:CDS 45.0%
ACCCTCCTAACATGGACACT+CGG - chr1.2:39202901-39202920 MS.gene018791:CDS 50.0%
ACGACTTCATTGGTCGTGTG+TGG - chr1.2:39201323-39201342 MS.gene018791:CDS 50.0%
ACTTGGCTACTCAAGGGGAA+AGG - chr1.2:39203066-39203085 MS.gene018791:CDS 50.0%
AGAAGGGCCACAACTTGGAA+TGG + chr1.2:39203182-39203201 None:intergenic 50.0%
AGACCAAACCCCATCTTGGA+GGG - chr1.2:39201020-39201039 MS.gene018791:CDS 50.0%
AGCGTACGGATCACAACTTC+CGG + chr1.2:39201155-39201174 None:intergenic 50.0%
ATAGTCCTTTGGCGCCACAA+TGG - chr1.2:39201383-39201402 MS.gene018791:CDS 50.0%
CAAACTGTCGAGCTGGCTAA+CGG + chr1.2:39202547-39202566 None:intergenic 50.0%
CACCACTTGGGTGAAGAACT+AGG + chr1.2:39202407-39202426 None:intergenic 50.0%
CAGGAGACTCGATCACAAAC+CGG - chr1.2:39201858-39201877 MS.gene018791:CDS 50.0%
CCGAGCTTAACTTCAGCGTA+CGG + chr1.2:39201169-39201188 None:intergenic 50.0%
CCGTACGCTGAAGTTAAGCT+CGG - chr1.2:39201166-39201185 MS.gene018791:CDS 50.0%
CGTACGCTGAAGTTAAGCTC+GGG - chr1.2:39201167-39201186 MS.gene018791:CDS 50.0%
CTATACCATTGTGGCGCCAA+AGG + chr1.2:39201391-39201410 None:intergenic 50.0%
CTCAACAAGGTCATAGGTGC+TGG + chr1.2:39201071-39201090 None:intergenic 50.0%
CTTGGAGGGGGAAAAATCTC+TGG - chr1.2:39201034-39201053 MS.gene018791:CDS 50.0%
CTTGGGTGAAGAACTAGGAG+TGG + chr1.2:39202402-39202421 None:intergenic 50.0%
CTTTGGCGCCACAATGGTAT+AGG - chr1.2:39201389-39201408 MS.gene018791:CDS 50.0%
GGACTAGAATCTCTCAGAGC+AGG - chr1.2:39201689-39201708 MS.gene018791:CDS 50.0%
GTTCCGTCATAAGCTTCCGT+CGG - chr1.2:39203232-39203251 MS.gene018791:CDS 50.0%
TTAGCCAGCTCGACAGTTTG+AGG - chr1.2:39202547-39202566 MS.gene018791:CDS 50.0%
TTGCATGGTCCTGACAAAGC+TGG - chr1.2:39202294-39202313 MS.gene018791:CDS 50.0%
! ACAAACAGTGCCGTTGCTCT+TGG + chr1.2:39203119-39203138 None:intergenic 50.0%
! ATCGGTTCCACTAACAGTCG+CGG + chr1.2:39201518-39201537 None:intergenic 50.0%
! CTCCTAGTTCTTCACCCAAG+TGG - chr1.2:39202402-39202421 MS.gene018791:CDS 50.0%
! GACTTAGAAGCATAGCTGGC+AGG - chr1.2:39203024-39203043 MS.gene018791:CDS 50.0%
! GCCACAATGGTATAGGTTGG+AGG - chr1.2:39201396-39201415 MS.gene018791:CDS 50.0%
! GGAAGCTTATGACGGAACCT+CGG + chr1.2:39203230-39203249 None:intergenic 50.0%
! GGCAGAAGTGGATTCGAACA+AGG - chr1.2:39202169-39202188 MS.gene018791:CDS 50.0%
! GTTGATGCTGGCTGTTTGGA+TGG - chr1.2:39201447-39201466 MS.gene018791:CDS 50.0%
! TGGTGACTTGGCTACTCAAG+GGG - chr1.2:39203061-39203080 MS.gene018791:CDS 50.0%
! TTTGCACCTCCAGCTTTGTC+AGG + chr1.2:39202306-39202325 None:intergenic 50.0%
!! ACAGACTGTGGTTGGTGACT+TGG - chr1.2:39203049-39203068 MS.gene018791:CDS 50.0%
!! CGGTGCCGCTTAATTTCTTC+AGG - chr1.2:39203252-39203271 MS.gene018791:CDS 50.0%
!! GAGAGTTGATGCTGGCTGTT+TGG - chr1.2:39201443-39201462 MS.gene018791:CDS 50.0%
!! GCCAAACAGCTCTGGAAATC+TGG - chr1.2:39202042-39202061 MS.gene018791:CDS 50.0%
!! GGTTAAGGGAGAGTTGATGC+TGG - chr1.2:39201435-39201454 MS.gene018791:CDS 50.0%
!! GTTGGTGACTTGGCTACTCA+AGG - chr1.2:39203059-39203078 MS.gene018791:CDS 50.0%
!! TCCATGTTAGGAGGGTGTCT+TGG + chr1.2:39202897-39202916 None:intergenic 50.0%
ACCAAACCCCATCTTGGAGG+GGG - chr1.2:39201022-39201041 MS.gene018791:CDS 55.0%
ACTACCTCCTTTCTCAGCGG+TGG + chr1.2:39202618-39202637 None:intergenic 55.0%
AGCCGAGTGTCCATGTTAGG+AGG + chr1.2:39202906-39202925 None:intergenic 55.0%
AGCTGGCAGGATACAGACTG+TGG - chr1.2:39203037-39203056 MS.gene018791:CDS 55.0%
ATGTCAGACGGTCGCGAAGT+CGG + chr1.2:39202984-39203003 None:intergenic 55.0%
CAAGTTGTGGCCCTTCTGAC+CGG - chr1.2:39203185-39203204 MS.gene018791:CDS 55.0%
CACAGTAACCTCCAACACCG+AGG + chr1.2:39201281-39201300 None:intergenic 55.0%
CAGCAGTGATCTTCGCCCAA+CGG - chr1.2:39202020-39202039 MS.gene018791:CDS 55.0%
CATGGTCCTGACAAAGCTGG+AGG - chr1.2:39202297-39202316 MS.gene018791:CDS 55.0%
CGCGACCGTCTGACATTGTT+CGG - chr1.2:39202988-39203007 MS.gene018791:CDS 55.0%
CGTTGCTGCGGAACCATTTG+AGG - chr1.2:39201747-39201766 MS.gene018791:CDS 55.0%
CTATCTGGGGGAACCCGTTT+CGG + chr1.2:39201367-39201386 None:intergenic 55.0%
CTGGCGTGATCCAAGAGCAA+CGG - chr1.2:39203106-39203125 MS.gene018791:CDS 55.0%
GACCAAACCCCATCTTGGAG+GGG - chr1.2:39201021-39201040 MS.gene018791:CDS 55.0%
GAGACCAAACCCCATCTTGG+AGG - chr1.2:39201019-39201038 MS.gene018791:CDS 55.0%
GAGAGCCGAGTGTCCATGTT+AGG + chr1.2:39202909-39202928 None:intergenic 55.0%
GATGCCTCAAACTGTCGAGC+TGG + chr1.2:39202554-39202573 None:intergenic 55.0%
GCCAAGACACCCTCCTAACA+TGG - chr1.2:39202893-39202912 MS.gene018791:CDS 55.0%
GCCGAGTGTCCATGTTAGGA+GGG + chr1.2:39202905-39202924 None:intergenic 55.0%
GGCAGGATACAGACTGTGGT+TGG - chr1.2:39203041-39203060 MS.gene018791:CDS 55.0%
GGCGCCACAATGGTATAGGT+TGG - chr1.2:39201393-39201412 MS.gene018791:CDS 55.0%
GGCTGTTTGGATGGGTACAC+AGG - chr1.2:39201456-39201475 MS.gene018791:CDS 55.0%
GGTTCCCCCAGATAGTCCTT+TGG - chr1.2:39201372-39201391 MS.gene018791:CDS 55.0%
GTGGCGCCAAAGGACTATCT+GGG + chr1.2:39201381-39201400 None:intergenic 55.0%
TCCAGAGCTGTTTGGCCGTT+GGG + chr1.2:39202038-39202057 None:intergenic 55.0%
TCGAGCTGGCTAACGGTCAA+CGG + chr1.2:39202540-39202559 None:intergenic 55.0%
TGGCGCCAAAGGACTATCTG+GGG + chr1.2:39201380-39201399 None:intergenic 55.0%
TGTGGCGCCAAAGGACTATC+TGG + chr1.2:39201382-39201401 None:intergenic 55.0%
TTCCAGAGCTGTTTGGCCGT+TGG + chr1.2:39202039-39202058 None:intergenic 55.0%
! GCACCGACGGAAGCTTATGA+CGG + chr1.2:39203238-39203257 None:intergenic 55.0%
! TTTCTCGAAGGACCGGCTTC+AGG - chr1.2:39201255-39201274 MS.gene018791:CDS 55.0%
!! TCACGCCGATTCAGCTCATC+CGG - chr1.2:39202929-39202948 MS.gene018791:CDS 55.0%
!!! GGAGCCGCTGATTTTGAGTG+TGG - chr1.2:39201768-39201787 MS.gene018791:CDS 55.0%
CGAGCTGGCTAACGGTCAAC+GGG + chr1.2:39202539-39202558 None:intergenic 60.0%
CGGTCAGAAGGGCCACAACT+TGG + chr1.2:39203187-39203206 None:intergenic 60.0%
GCATCCGAGTGCCAAGCTTC+TGG + chr1.2:39201496-39201515 None:intergenic 60.0%
GGCGCCAAAGGACTATCTGG+GGG + chr1.2:39201379-39201398 None:intergenic 60.0%
GGCTGCAGTCTTTGCTGAGC+TGG - chr1.2:39203087-39203106 MS.gene018791:CDS 60.0%
TCCCCCTCCAAGATGGGGTT+TGG + chr1.2:39201026-39201045 None:intergenic 60.0%
TCGGATGCCGCGACTGTTAG+TGG - chr1.2:39201508-39201527 MS.gene018791:CDS 60.0%
TGAGCCACCGCTGAGAAAGG+AGG - chr1.2:39202611-39202630 MS.gene018791:CDS 60.0%
TGTCAGACGGTCGCGAAGTC+GGG + chr1.2:39202983-39203002 None:intergenic 60.0%
CCAACACCGAGGCCTGAAGC+CGG + chr1.2:39201270-39201289 None:intergenic 65.0%
CGCTGAGCCACCGCTGAGAA+AGG - chr1.2:39202608-39202627 MS.gene018791:CDS 65.0%
GCCCAACGGCCAAACAGCTC+TGG - chr1.2:39202034-39202053 MS.gene018791:CDS 65.0%
! GAAGGACCGGCTTCAGGCCT+CGG - chr1.2:39201261-39201280 MS.gene018791:CDS 65.0%
!! GCTTCAGGCCTCGGTGTTGG+AGG - chr1.2:39201270-39201289 MS.gene018791:CDS 65.0%
! CCGGCTTCAGGCCTCGGTGT+TGG - chr1.2:39201267-39201286 MS.gene018791:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 39200983 39203307 39200983 ID=MS.gene018791
chr1.2 mRNA 39200983 39203307 39200983 ID=MS.gene018791.t1;Parent=MS.gene018791
chr1.2 exon 39200983 39203307 39200983 ID=MS.gene018791.t1.exon1;Parent=MS.gene018791.t1
chr1.2 CDS 39200983 39203307 39200983 ID=cds.MS.gene018791.t1;Parent=MS.gene018791.t1
Gene Sequence

>MS.gene018791

ATGCAGAGGCCACCGCCTGAAGATTTTCTGTTGAAAGAGACCAAACCCCATCTTGGAGGGGGAAAAATCTCTGGTGACAAACTAACCAGCACCTATGACCTTGTTGAGCAGATGCAATACCTTTATGTGAGGGTTGTTAAGGCTAAGGATTTGCCTTCAAAGGATGTTACCGGAAGTTGTGATCCGTACGCTGAAGTTAAGCTCGGGAACTATAAAGGAACTACTCGGCATTTTGAGAAGAAAACCAATCCTGAATGGAATCAGGTGTTTGCTTTCTCGAAGGACCGGCTTCAGGCCTCGGTGTTGGAGGTTACTGTGAAAGATAAGGATGTTGTGAAGGACGACTTCATTGGTCGTGTGTGGTTTGATTTGAATGAGGTTCCGAAACGGGTTCCCCCAGATAGTCCTTTGGCGCCACAATGGTATAGGTTGGAGGATAGAAAGGGTGATAAGGTTAAGGGAGAGTTGATGCTGGCTGTTTGGATGGGTACACAGGCTGATGAAGCATTTCCAGAAGCTTGGCACTCGGATGCCGCGACTGTTAGTGGAACCGATGCTCTTGCAAATATTAGGTCAAAAGTTTATTTATCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATTGAGGCACAAGACTTACAGCCAACTGATAAGGGTAGATACCCGGAAGTTTTTGTGAAGGCTATTTTGGGGAATCAGGCATTGAGGACTAGAATCTCTCAGAGCAGGAGTATCAATCCATTGTGGAACGAGGATTTGATGTTCGTTGCTGCGGAACCATTTGAGGAGCCGCTGATTTTGAGTGTGGAAGACAGAGTTGCTCCGAACAAAGAAGAAGTATTGGGGAGGTGTGCTATTCCTTTGCAGTTTATGGACAGGAGACTCGATCACAAACCGGTGAATACTAGGTGGTTTAATCTTGAAAAGCATATCATTATAGAAGGGGAAAAGAAGAAAGAAATTAAATTTGCAAGTAGGATTCATATGAGGGTTTGTTTAGAAGGTGGTTATCATGTTTTGGATGAATCAACACACTACAGCAGTGATCTTCGCCCAACGGCCAAACAGCTCTGGAAATCTGGAATTGGTGTTCTTGAAGTTGGGATATTGAGTGCTCAGGGTTTGATGCCGATGAAAAATAAAGATGGGAGGGGGACAACTGATGCTTATTGTGTAGCGAAATATGGGCAGAAGTGGATTCGAACAAGGACAATCATTGATAGCTTTATGCCGAGGTGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTGATTACAATTGGTGTATTTGATAATTGTCATTTGCATGGTCCTGACAAAGCTGGAGGTGCAAAAGATTCAAGGATTGGTAAGGTAAGGATTCGACTTTCGACACTCGAGACTGATCGAGTGTACACACATTCCTATCCACTCCTAGTTCTTCACCCAAGTGGTGTGAAGAAAATGGGTGAAATTCAATTGGCTGTGAGGTTCACTTGTTCTTCTTTGCTCAACATGATGCACATGTATTCACTACCTCTGTTGCCAAAGATGCACTATATACACCCGTTGACCGTTAGCCAGCTCGACAGTTTGAGGCATCAAGCTACTCAGATAGTTTCAATGAGGCTGAGTCGCGCTGAGCCACCGCTGAGAAAGGAGGTAGTTGAGTATATGCTTGATGTTGGTTCCCACATGTGGAGTATGAGAAGAAGCAAGGCTAATTTCTTCAGAATCATGGGAGTATTGAGTGGACTAATTGCTGCGGGAAAATGGTTCGATCAAATTTGCAATTGGAAAAATCCAATTACTACAGTTCTGATTCATATCTTGTTTATAATATTGGTCATGTATCCTGAACTTATCTTACCAACAGTTTTCCTTTACCTCTTCCTGATTGGAATTTGGCACTATAGATGGAGGCCAAGACACCCTCCTAACATGGACACTCGGCTCTCTCACGCCGATTCAGCTCATCCGGATGAACTTGATGAAGAGTTCGACACATTCCCGACTTCGCGACCGTCTGACATTGTTCGGATGAGATATGATCGACTTAGAAGCATAGCTGGCAGGATACAGACTGTGGTTGGTGACTTGGCTACTCAAGGGGAAAGGCTGCAGTCTTTGCTGAGCTGGCGTGATCCAAGAGCAACGGCACTGTTTGTGATTTTCTGTCTGCTTGCTGCTACTATACTGTATGTGACTCCATTCCAAGTTGTGGCCCTTCTGACCGGAATTTATGTGTTGAGACATCCGAGGTTCCGTCATAAGCTTCCGTCGGTGCCGCTTAATTTCTTCAGGAGGCTGCCTGCAAGAACTGATTGCATGCTTTGA
Protein sequence

>MS.gene018791.t1

MQRPPPEDFLLKETKPHLGGGKISGDKLTSTYDLVEQMQYLYVRVVKAKDLPSKDVTGSCDPYAEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRLQASVLEVTVKDKDVVKDDFIGRVWFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPEVFVKAILGNQALRTRISQSRSINPLWNEDLMFVAAEPFEEPLILSVEDRVAPNKEEVLGRCAIPLQFMDRRLDHKPVNTRWFNLEKHIIIEGEKKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSGIGVLEVGILSAQGLMPMKNKDGRGTTDAYCVAKYGQKWIRTRTIIDSFMPRWNEQYTWEVFDPCTVITIGVFDNCHLHGPDKAGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVKKMGEIQLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAAGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTVFLYLFLIGIWHYRWRPRHPPNMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLLAATILYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML