AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003921

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003921.t1 MTR_4g066150 99.089 768 7 0 1 768 1 768 0.0 1585
MS.gene003921.t1 MTR_7g092770 81.548 775 134 7 1 768 1 773 0.0 1333
MS.gene003921.t1 MTR_0305s0020 82.147 773 132 4 1 768 1 772 0.0 1330
MS.gene003921.t1 MTR_5g010390 67.185 771 242 4 9 768 235 1005 0.0 1130
MS.gene003921.t1 MTR_3g027150 65.452 796 246 7 2 768 25 820 0.0 1117
MS.gene003921.t1 MTR_4g023460 67.006 785 237 8 6 768 356 1140 0.0 1105
MS.gene003921.t1 MTR_0291s0010 64.758 786 255 6 5 768 10 795 0.0 1092
MS.gene003921.t1 MTR_4g033215 64.691 776 265 6 1 768 268 1042 0.0 1052
MS.gene003921.t1 MTR_8g031270 59.897 773 293 7 9 768 233 1001 0.0 996
MS.gene003921.t1 MTR_7g076900 59.898 783 285 7 9 768 235 1011 0.0 984
MS.gene003921.t1 MTR_4g057675 56.701 776 312 9 8 768 15 781 0.0 862
MS.gene003921.t1 MTR_4g071870 54.092 782 300 11 2 768 10 747 0.0 824
MS.gene003921.t1 MTR_4g107850 52.437 759 311 15 33 767 303 1035 0.0 784
MS.gene003921.t1 MTR_6g027540 50.396 758 332 14 31 767 272 1006 0.0 754
MS.gene003921.t1 MTR_6g028050 49.472 758 344 13 31 767 284 1023 0.0 745
MS.gene003921.t1 MTR_1g015540 48.395 779 369 13 7 765 3 768 0.0 700
MS.gene003921.t1 MTR_5g096980 40.051 779 424 12 9 768 7 761 0.0 585
MS.gene003921.t1 MTR_4g023250 65.116 129 43 1 640 768 1 127 3.12e-52 177
MS.gene003921.t1 MTR_4g023230 50.820 122 45 1 557 678 49 155 2.36e-32 123
MS.gene003921.t1 MTR_4g023390 48.544 103 31 2 644 746 17 97 1.68e-22 93.2
MS.gene003921.t1 MTR_4g023240 63.333 60 22 0 491 550 10 69 6.15e-19 82.0
MS.gene003921.t1 MTR_7g052280 50.633 79 13 4 248 324 1 55 4.49e-14 67.8
MS.gene003921.t1 MTR_2g027360 31.250 128 77 3 42 163 3 125 9.34e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003921.t1 AT3G57880 80.699 772 144 3 1 768 1 771 0.0 1337
MS.gene003921.t1 AT3G57880 80.699 772 144 3 1 768 1 771 0.0 1337
MS.gene003921.t1 AT3G57880 80.699 772 144 3 1 768 1 771 0.0 1337
MS.gene003921.t1 AT3G57880 80.699 772 144 3 1 768 1 771 0.0 1337
MS.gene003921.t1 AT5G12970 81.901 768 138 1 1 768 1 767 0.0 1315
MS.gene003921.t1 AT1G51570 78.581 775 158 5 1 768 1 774 0.0 1295
MS.gene003921.t1 AT4G11610 66.018 771 250 5 9 768 240 1009 0.0 1118
MS.gene003921.t1 AT4G11610 66.018 771 250 5 9 768 236 1005 0.0 1118
MS.gene003921.t1 AT4G11610 66.018 771 250 5 9 768 103 872 0.0 1117
MS.gene003921.t1 AT5G06850 65.689 784 248 6 6 768 9 792 0.0 1110
MS.gene003921.t1 AT5G48060 65.280 769 251 6 12 768 270 1034 0.0 1087
MS.gene003921.t1 AT1G22610 64.661 781 261 7 1 767 247 1026 0.0 1060
MS.gene003921.t1 AT4G00700 57.908 784 309 8 2 768 225 1004 0.0 954
MS.gene003921.t1 AT4G00700 57.908 784 309 8 2 768 225 1004 0.0 954
MS.gene003921.t1 AT1G04150 57.888 786 295 11 6 768 238 1010 0.0 924
MS.gene003921.t1 AT4G20080 58.333 768 301 11 10 768 15 772 0.0 919
MS.gene003921.t1 AT3G61300 55.844 770 316 12 5 767 217 969 0.0 907
MS.gene003921.t1 AT1G74720 50.439 797 349 16 2 767 297 1078 0.0 794
MS.gene003921.t1 AT5G17980 49.800 751 345 14 31 767 314 1046 0.0 754
MS.gene003921.t1 AT3G03680 50.262 764 328 16 33 767 274 1014 0.0 753
MS.gene003921.t1 AT3G61720 37.855 811 433 22 6 767 4 792 3.32e-164 494
MS.gene003921.t1 AT5G03435 40.362 773 409 23 6 763 4 739 2.20e-163 491
MS.gene003921.t1 AT5G03435 42.683 574 299 15 6 570 4 556 3.18e-138 419
MS.gene003921.t1 AT5G44760 49.875 399 155 9 8 399 4 364 2.80e-120 370
MS.gene003921.t1 AT5G44760 22.587 518 273 17 190 672 27 451 2.43e-20 95.5
MS.gene003921.t1 AT1G03370 32.787 122 78 2 42 161 3 122 1.10e-11 68.9
MS.gene003921.t1 AT1G03370 32.787 122 78 2 42 161 3 122 1.21e-11 68.9

Find 182 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTATCCTACTTGCAAATT+TGG 0.128416 4.2:-39581588 None:intergenic
CTCATTCCATATAGGATTTA+TGG 0.161420 4.2:-39581360 None:intergenic
GTTTGATCGCTTTCGGAAAA+TGG 0.180986 4.2:+39582359 MS.gene003921:CDS
TTTCATTATTCTGAAGAAAT+TGG 0.197860 4.2:-39582326 None:intergenic
TTGCAAGTAGGATACATTTA+AGG 0.226990 4.2:+39581594 MS.gene003921:CDS
TCATATCCTATTCATAATAT+TGG 0.235720 4.2:+39582429 MS.gene003921:CDS
AGGGCAAACTCATGAGAATT+TGG 0.271982 4.2:-39580642 None:intergenic
TTCTCATGAGTTTGCCCTTA+AGG 0.273893 4.2:+39580647 MS.gene003921:CDS
CAGTTCCTCTTAATTTCTTT+AGG 0.274083 4.2:+39582887 MS.gene003921:CDS
TCGGATCCAGGCTTCTGTTT+TGG 0.277864 4.2:+39580917 MS.gene003921:CDS
ACATGTTCATGATTGGAATA+TGG 0.280190 4.2:+39582491 MS.gene003921:CDS
ATGAGGCATTTCCTGATTCT+TGG 0.294072 4.2:+39581132 MS.gene003921:CDS
TTGGAATATGGAACTTTAGA+TGG 0.319453 4.2:+39582503 MS.gene003921:CDS
CTCCCAAGCTTTGGTATGTC+AGG 0.329807 4.2:+39581219 MS.gene003921:CDS
TGAAGACCATAAATCCTATA+TGG 0.331183 4.2:+39581354 MS.gene003921:CDS
TTCTTATACATGTTCATGAT+TGG 0.336283 4.2:+39582484 MS.gene003921:CDS
GATACATTTAAGGTTATGTT+TGG 0.339818 4.2:+39581604 MS.gene003921:CDS
ACCTAGTGTTCACCGGCTTA+TGG 0.344461 4.2:-39581517 None:intergenic
ATTGTTGGAAGTATTAGTTC+AGG 0.346883 4.2:-39582460 None:intergenic
GGATAGGGAAGGTAAGAATT+AGG 0.349936 4.2:+39581969 MS.gene003921:CDS
AGAAGCCTGGATCCGATCTT+TGG 0.356505 4.2:-39580910 None:intergenic
TGTTCGGCGTTGTCTCCTTA+AGG 0.365819 4.2:-39580662 None:intergenic
TTATCGAGTTTGATCGCTTT+CGG 0.366151 4.2:+39582352 MS.gene003921:CDS
TGTGGAGCCAAAGGGCTATC+TGG 0.367731 4.2:-39581029 None:intergenic
GAGAGTTAATGCTTGCAGTT+TGG 0.375142 4.2:+39581093 MS.gene003921:CDS
GGGAGAGTTCAAAGTGTTAT+AGG 0.375992 4.2:+39582676 MS.gene003921:CDS
CTTTGGCTCCACAATGGTAT+AGG 0.376988 4.2:+39581039 MS.gene003921:CDS
TGAATTAGTATCGATGTAAT+CGG 0.380138 4.2:-39582409 None:intergenic
CCATCTACTGTTATCACAAT+AGG 0.380739 4.2:+39581896 MS.gene003921:CDS
TGATTCAGCTCGATCATCTA+AGG 0.384216 4.2:+39582182 MS.gene003921:CDS
GTCAAATCCCCAGTGGAATC+AGG 0.385686 4.2:+39580875 MS.gene003921:CDS
GCACTACATTCATCCCTTAT+CGG 0.387059 4.2:+39582159 MS.gene003921:CDS
CATTTGTTCGACTAGGTCAT+AGG 0.388513 4.2:-39580724 None:intergenic
GCTTATTGCGTAGCAAAATT+CGG 0.400530 4.2:+39581791 MS.gene003921:CDS
TCTACTACTTCTTTCCTTAA+CGG 0.401686 4.2:-39582253 None:intergenic
GCATCAGAATGCCAAGAATC+AGG 0.404599 4.2:-39581143 None:intergenic
AACATGTATAAGAAAATTGT+TGG 0.406603 4.2:-39582475 None:intergenic
GGTTTGATCAAATTTGCAAT+TGG 0.408748 4.2:+39582380 MS.gene003921:CDS
CCTATTGTGATAACAGTAGA+TGG 0.409352 4.2:-39581896 None:intergenic
GAGAAGTTCAATTGGCTGTA+AGG 0.412356 4.2:+39582074 MS.gene003921:CDS
TTTACTTGTCTCCCAAGCTT+TGG 0.414127 4.2:+39581210 MS.gene003921:CDS
AAAGAACCAATATTATGAAT+AGG 0.415882 4.2:-39582435 None:intergenic
CCATCAGGTGTGAAGAAAAC+AGG 0.419177 4.2:+39582052 MS.gene003921:CDS
AACTCTTCGTCTAGTTCATC+GGG 0.419737 4.2:-39582583 None:intergenic
CTATCTGGTGGTATACGTTT+CGG 0.421790 4.2:-39581014 None:intergenic
AAAACTAAAGGTTCCTCAAA+TGG 0.424899 4.2:-39581407 None:intergenic
TCCAAGCTTCACTTCAACAT+AGG 0.425674 4.2:-39580817 None:intergenic
GCATAATCTCGAGAAGCATT+TGG 0.428065 4.2:+39581541 MS.gene003921:CDS
GCCAAGACACCCTCCACATA+TGG 0.428256 4.2:+39582528 MS.gene003921:CDS
GTTCGGCGTTGTCTCCTTAA+GGG 0.430999 4.2:-39580661 None:intergenic
GAAAACAGGAGAAGTTCAAT+TGG 0.436493 4.2:+39582066 MS.gene003921:CDS
GAGAAGCATTTGGTTGTTGA+AGG 0.447113 4.2:+39581551 MS.gene003921:CDS
TCTTCCACGGTTAAAACTAA+AGG 0.447661 4.2:-39581419 None:intergenic
CAAGTTGTGTTACTAATCAC+TGG 0.449588 4.2:+39582820 MS.gene003921:CDS
CATTTAAGGTTATGTTTGGA+TGG 0.455868 4.2:+39581608 MS.gene003921:CDS
TCGAGCTGAATCACCGATAA+GGG 0.456809 4.2:-39582172 None:intergenic
TAAGGTTATGTTTGGATGGA+GGG 0.461239 4.2:+39581612 MS.gene003921:CDS
TTCCTCTTAATTTCTTTAGG+AGG 0.462400 4.2:+39582890 MS.gene003921:CDS
TGTCGCAGCCGAGCCATTTG+AGG 0.464409 4.2:+39581394 MS.gene003921:CDS
AGTATTGGTATTCTAGAAGT+AGG 0.464674 4.2:+39581707 MS.gene003921:CDS
TGACTTCTTCTCAAAATGCT+TGG 0.466042 4.2:-39580856 None:intergenic
ATTAGTAACACAACTTGAAA+AGG 0.467619 4.2:-39582814 None:intergenic
AACCTCCTAAAGAAATTAAG+AGG 0.470949 4.2:-39582892 None:intergenic
TTCCATAGCTGCTTCGCCGT+TGG 0.471657 4.2:-39581680 None:intergenic
CCAAGCTTCACTTCAACATA+GGG 0.471707 4.2:-39580816 None:intergenic
TATCAACGATTGTCCTAGTT+CGG 0.471964 4.2:-39581826 None:intergenic
ACTGCCCCTGCTCCAATGTT+CGG 0.472062 4.2:-39580678 None:intergenic
GGCCAACGGCGAAGCAGCTA+TGG 0.472843 4.2:+39581678 MS.gene003921:CDS
TCCATATGTGGAGGGTGTCT+TGG 0.475204 4.2:-39582529 None:intergenic
ATCGAGCTGAATCACCGATA+AGG 0.475343 4.2:-39582173 None:intergenic
CTCATCACAGTAGCGATCTT+AGG 0.475654 4.2:+39581657 MS.gene003921:CDS
ATCAAATCCTCATTCCATAT+AGG 0.477985 4.2:-39581368 None:intergenic
AAATCAAAGGATTCAAGGAT+AGG 0.478120 4.2:+39581953 MS.gene003921:CDS
TTCGACTAGGTCATAGGTGC+AGG 0.481116 4.2:-39580718 None:intergenic
GAGACAAATCAAAGGATTCA+AGG 0.481184 4.2:+39581948 MS.gene003921:CDS
GTTAATGCTTGCAGTTTGGA+TGG 0.482127 4.2:+39581097 MS.gene003921:CDS
GGAAGTTTCTGTCTGAATCT+AGG 0.482384 4.2:-39582862 None:intergenic
ATGTCCGAGGATCGTGATGT+AGG 0.482898 4.2:-39582616 None:intergenic
AAACTCTTCGTCTAGTTCAT+CGG 0.483861 4.2:-39582584 None:intergenic
ATGAAAACTAGAGATGGTAG+AGG 0.489090 4.2:+39581758 MS.gene003921:CDS
GAATTAGTATCGATGTAATC+GGG 0.493253 4.2:-39582408 None:intergenic
ACAACGCCGAACATTGGAGC+AGG 0.497199 4.2:+39580672 MS.gene003921:CDS
TTGTTGGAAGTATTAGTTCA+GGG 0.498579 4.2:-39582459 None:intergenic
GCCGAGCTGAGCCACCGTTA+AGG 0.498838 4.2:+39582239 MS.gene003921:CDS
TGCAAGCATTAACTCTCCCT+TGG 0.498863 4.2:-39581087 None:intergenic
AGGCGAAAACCTGATTCCAC+TGG 0.501075 4.2:-39580884 None:intergenic
TTTGATAACAATCATTTACA+TGG 0.501614 4.2:+39581923 MS.gene003921:CDS
CCCTATGTTGAAGTGAAGCT+TGG 0.501694 4.2:+39580816 MS.gene003921:CDS
GACCCTGACATACCAAAGCT+TGG 0.501973 4.2:-39581222 None:intergenic
ATCTTGCAACTCAAGGAGAA+AGG 0.507382 4.2:+39582701 MS.gene003921:CDS
CTTCTCCAAAGATCGGATCC+AGG 0.507857 4.2:+39580905 MS.gene003921:CDS
TTAAGGTTATGTTTGGATGG+AGG 0.508953 4.2:+39581611 MS.gene003921:CDS
GGTCAATGTAATCGAAGCTC+AGG 0.509959 4.2:+39581241 MS.gene003921:CDS
TGTAATCGAAGCTCAGGACT+TGG 0.512090 4.2:+39581247 MS.gene003921:CDS
CATTCTGATGCAGCAATGGT+TGG 0.514711 4.2:+39581155 MS.gene003921:CDS
ACCCTGACATACCAAAGCTT+GGG 0.516304 4.2:-39581221 None:intergenic
GTGTATTGTTCATTCCACTT+TGG 0.520325 4.2:-39581857 None:intergenic
CTGTCCAACCCTGTCTTCCA+CGG 0.525250 4.2:-39581432 None:intergenic
TGTCCGAGGATCGTGATGTA+GGG 0.528130 4.2:-39582615 None:intergenic
TCCTTAACGGTGGCTCAGCT+CGG 0.530257 4.2:-39582240 None:intergenic
GGATGGAGGGTACCACGTGC+TGG 0.531458 4.2:+39581625 MS.gene003921:CDS
ACCATAAGCCGGTGAACACT+AGG 0.534500 4.2:+39581516 MS.gene003921:CDS
AAGAAATTAAGAGGAACTGA+TGG 0.534713 4.2:-39582883 None:intergenic
CAGCTATGGAAGTCAAGTAT+TGG 0.535757 4.2:+39581692 MS.gene003921:CDS
AAGGAGACAACGCCGAACAT+TGG 0.538827 4.2:+39580666 MS.gene003921:CDS
CATAAATCCTATATGGAATG+AGG 0.539747 4.2:+39581361 MS.gene003921:CDS
GTATTGGTATTCTAGAAGTA+GGG 0.539882 4.2:+39581708 MS.gene003921:CDS
CTATACCATTGTGGAGCCAA+AGG 0.540343 4.2:-39581038 None:intergenic
GATGGATTTAGTACTAAAAG+AGG 0.542003 4.2:-39582034 None:intergenic
TCACCTCCAAAACAGAAGCC+TGG 0.542592 4.2:-39580923 None:intergenic
AATCAAAGGATTCAAGGATA+GGG 0.545049 4.2:+39581954 MS.gene003921:CDS
TTGATAGCTTTAGTCCAAAG+TGG 0.553928 4.2:+39581843 MS.gene003921:CDS
TCCCAAGCTTTGGTATGTCA+GGG 0.559256 4.2:+39581220 MS.gene003921:CDS
TTGGCATTCTGATGCAGCAA+TGG 0.559991 4.2:+39581151 MS.gene003921:CDS
CGCCTTTGCACCATCTGCAA+AGG 0.561102 4.2:-39581488 None:intergenic
TTAATGCTTGCAGTTTGGAT+GGG 0.561743 4.2:+39581098 MS.gene003921:CDS
TACGATCGATTAAGAAGCAT+CGG 0.562424 4.2:+39582652 MS.gene003921:CDS
GACAGAAGTGGATCCGAACT+AGG 0.563556 4.2:+39581813 MS.gene003921:CDS
ATAGGTGATCTTGCAACTCA+AGG 0.563643 4.2:+39582694 MS.gene003921:CDS
GCAAACTCATGAGAATTTGG+TGG 0.569666 4.2:-39580639 None:intergenic
CTTTGACGACACGAACATAG+AGG 0.571341 4.2:-39580752 None:intergenic
TATACCACCAGATAGCCCTT+TGG 0.574314 4.2:+39581022 MS.gene003921:CDS
GGCGAAAACCTGATTCCACT+GGG 0.574431 4.2:-39580883 None:intergenic
TAAAGGTTCCTCAAATGGCT+CGG 0.575679 4.2:-39581402 None:intergenic
GTTCCCTACATCACGATCCT+CGG 0.575947 4.2:+39582612 MS.gene003921:CDS
TGATGCAGCAATGGTTGGAT+CGG 0.576790 4.2:+39581160 MS.gene003921:CDS
TTATGCCACCTAGTGTTCAC+CGG 0.576945 4.2:-39581524 None:intergenic
TTGCCTACAAAAGATGTCAC+TGG 0.577219 4.2:+39580783 MS.gene003921:CDS
TTTAAGTTGGAGAGATCCAA+GGG 0.577772 4.2:+39582735 MS.gene003921:CDS
TATACCATTGTGGAGCCAAA+GGG 0.578790 4.2:-39581037 None:intergenic
AGGACACCAAATTTGCAAGT+AGG 0.580415 4.2:+39581582 MS.gene003921:CDS
GATAGACTAGTGTCCATATG+TGG 0.580812 4.2:-39582541 None:intergenic
ATTTAGTACTAAAAGAGGAT+AGG 0.582002 4.2:-39582029 None:intergenic
GGTATTGCATTTGTTCGACT+AGG 0.585026 4.2:-39580731 None:intergenic
GATGGGAACTCAAGCAGATG+AGG 0.587116 4.2:+39581115 MS.gene003921:CDS
CGCAAAGGTGAGAAAGCCAA+GGG 0.589435 4.2:+39581071 MS.gene003921:CDS
AGTGAAGCTTGGAAACTACA+AGG 0.589926 4.2:+39580827 MS.gene003921:CDS
CTGGATCCGATCTTTGGAGA+AGG 0.592429 4.2:-39580904 None:intergenic
TAGCAAAATTCGGACAGAAG+TGG 0.592882 4.2:+39581801 MS.gene003921:CDS
TCGCAAAGGTGAGAAAGCCA+AGG 0.596308 4.2:+39581070 MS.gene003921:CDS
TGGTTCCAAGTGATAAAAGC+CGG 0.597256 4.2:+39581267 MS.gene003921:CDS
AACGCCGAACATTGGAGCAG+GGG 0.599485 4.2:+39580674 MS.gene003921:CDS
TTCCTTTGCAGATGGTGCAA+AGG 0.599676 4.2:+39581486 MS.gene003921:CDS
ATCGATTAAGAAGCATCGGA+GGG 0.601165 4.2:+39582656 MS.gene003921:CDS
CTTTGCAGATGGTGCAAAGG+CGG 0.603089 4.2:+39581489 MS.gene003921:CDS
ACTACTTCTTTCCTTAACGG+TGG 0.605059 4.2:-39582250 None:intergenic
AGTGGAATGAACAATACACT+TGG 0.605319 4.2:+39581861 MS.gene003921:CDS
TGCTACGCAATAAGCATCTG+TGG 0.606731 4.2:-39581783 None:intergenic
ATGCCGATGAAAACTAGAGA+TGG 0.607581 4.2:+39581752 MS.gene003921:CDS
CAACGCCGAACATTGGAGCA+GGG 0.608071 4.2:+39580673 MS.gene003921:CDS
GAATATGGAACTTTAGATGG+AGG 0.609696 4.2:+39582506 MS.gene003921:CDS
AGACTAGTGTCCATATGTGG+AGG 0.614164 4.2:-39582538 None:intergenic
TTCATCGGGAAAAGCTGCGT+CGG 0.616861 4.2:-39582569 None:intergenic
AACATGCTATCTGATCTAGC+AGG 0.617693 4.2:-39582916 None:intergenic
CAGAACAAAGATGAAACGCT+AGG 0.618253 4.2:+39581452 MS.gene003921:CDS
TGGAGCAGGGGCAGTCACAA+AGG 0.622756 4.2:+39580686 MS.gene003921:CDS
AGTAGAATACATGCTTGATG+TGG 0.623878 4.2:+39582270 MS.gene003921:CDS
TTAACCGTGGAAGACAGGGT+TGG 0.624449 4.2:+39581428 MS.gene003921:CDS
AAAGGATTCAAGGATAGGGA+AGG 0.624742 4.2:+39581958 MS.gene003921:CDS
GTGTATGATTCCTTTGCAGA+TGG 0.624945 4.2:+39581478 MS.gene003921:CDS
GATCGATTAAGAAGCATCGG+AGG 0.625201 4.2:+39582655 MS.gene003921:CDS
GACTAGTGTCCATATGTGGA+GGG 0.635062 4.2:-39582537 None:intergenic
ACATGGAGGAGACAAATCAA+AGG 0.645399 4.2:+39581940 MS.gene003921:CDS
CAGTAGCGATCTTAGGCCAA+CGG 0.646139 4.2:+39581664 MS.gene003921:CDS
AAGGCGGTTAGACCATAAGC+CGG 0.646306 4.2:+39581505 MS.gene003921:CDS
GTGGAATGAACAATACACTT+GGG 0.646697 4.2:+39581862 MS.gene003921:CDS
GTGAAGCTTGGAAACTACAA+GGG 0.649278 4.2:+39580828 MS.gene003921:CDS
TGAAAACTAGAGATGGTAGA+GGG 0.649780 4.2:+39581759 MS.gene003921:CDS
CGACACAAATTGTGTCGATG+AGG 0.652303 4.2:+39582212 MS.gene003921:CDS
GTAGGGATTATAAGTGCACA+CGG 0.655466 4.2:+39581725 MS.gene003921:CDS
GATAACAATCATTTACATGG+AGG 0.657018 4.2:+39581926 MS.gene003921:CDS
TCTTCGAGCCTATACCATTG+TGG 0.666442 4.2:-39581047 None:intergenic
TTGATGTGGATTCACATATG+TGG 0.676798 4.2:+39582284 MS.gene003921:CDS
GGAGCCAAAGGGCTATCTGG+TGG 0.685901 4.2:-39581026 None:intergenic
GAGTTGACTCGTCCAGCACG+TGG 0.688670 4.2:-39581637 None:intergenic
ATAAGCCGGTGAACACTAGG+TGG 0.694077 4.2:+39581519 MS.gene003921:CDS
ATAGCCCTTTGGCTCCACAA+TGG 0.694840 4.2:+39581033 MS.gene003921:CDS
AGAAGAAGTCAAATCCCCAG+TGG 0.701980 4.2:+39580868 MS.gene003921:CDS
TCTCATTCGAACAATGTCCG+AGG 0.706520 4.2:-39582629 None:intergenic
TATAGGCTCGAAGATCGCAA+AGG 0.722679 4.2:+39581056 MS.gene003921:CDS
TAGGGATTATAAGTGCACAC+GGG 0.747797 4.2:+39581726 MS.gene003921:CDS
GCGAAAACCTGATTCCACTG+GGG 0.783494 4.2:-39580882 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAACCAATATTATGAAT+AGG - chr4.2:39582438-39582457 None:intergenic 20.0%
!! AACATGTATAAGAAAATTGT+TGG - chr4.2:39582478-39582497 None:intergenic 20.0%
!! TCATATCCTATTCATAATAT+TGG + chr4.2:39582429-39582448 MS.gene003921:CDS 20.0%
!!! TTTCATTATTCTGAAGAAAT+TGG - chr4.2:39582329-39582348 None:intergenic 20.0%
!!! TTTGATAACAATCATTTACA+TGG + chr4.2:39581923-39581942 MS.gene003921:CDS 20.0%
! ATTAGTAACACAACTTGAAA+AGG - chr4.2:39582817-39582836 None:intergenic 25.0%
! ATTTAGTACTAAAAGAGGAT+AGG - chr4.2:39582032-39582051 None:intergenic 25.0%
! TTCTTATACATGTTCATGAT+TGG + chr4.2:39582484-39582503 MS.gene003921:CDS 25.0%
!! GATACATTTAAGGTTATGTT+TGG + chr4.2:39581604-39581623 MS.gene003921:CDS 25.0%
!! TTATAGCAGATGATTTTGTA+GGG + chr4.2:39580964-39580983 MS.gene003921:CDS 25.0%
!!! TGAATTAGTATCGATGTAAT+CGG - chr4.2:39582412-39582431 None:intergenic 25.0%
AAAACTAAAGGTTCCTCAAA+TGG - chr4.2:39581410-39581429 None:intergenic 30.0%
AAATCAAAGGATTCAAGGAT+AGG + chr4.2:39581953-39581972 MS.gene003921:CDS 30.0%
AACCTCCTAAAGAAATTAAG+AGG - chr4.2:39582895-39582914 None:intergenic 30.0%
AAGAAATTAAGAGGAACTGA+TGG - chr4.2:39582886-39582905 None:intergenic 30.0%
AATCAAAGGATTCAAGGATA+GGG + chr4.2:39581954-39581973 MS.gene003921:CDS 30.0%
ACATGTTCATGATTGGAATA+TGG + chr4.2:39582491-39582510 MS.gene003921:CDS 30.0%
ATCAAATCCTCATTCCATAT+AGG - chr4.2:39581371-39581390 None:intergenic 30.0%
ATGTATCCTACTTGCAAATT+TGG - chr4.2:39581591-39581610 None:intergenic 30.0%
CAGTTCCTCTTAATTTCTTT+AGG + chr4.2:39582887-39582906 MS.gene003921:CDS 30.0%
CATAAATCCTATATGGAATG+AGG + chr4.2:39581361-39581380 MS.gene003921:CDS 30.0%
CTCATTCCATATAGGATTTA+TGG - chr4.2:39581363-39581382 None:intergenic 30.0%
GATAACAATCATTTACATGG+AGG + chr4.2:39581926-39581945 MS.gene003921:CDS 30.0%
GGTTTGATCAAATTTGCAAT+TGG + chr4.2:39582380-39582399 MS.gene003921:CDS 30.0%
TCTACTACTTCTTTCCTTAA+CGG - chr4.2:39582256-39582275 None:intergenic 30.0%
TGAAGACCATAAATCCTATA+TGG + chr4.2:39581354-39581373 MS.gene003921:CDS 30.0%
TTCCTCTTAATTTCTTTAGG+AGG + chr4.2:39582890-39582909 MS.gene003921:CDS 30.0%
TTGCAAGTAGGATACATTTA+AGG + chr4.2:39581594-39581613 MS.gene003921:CDS 30.0%
TTGGAATATGGAACTTTAGA+TGG + chr4.2:39582503-39582522 MS.gene003921:CDS 30.0%
! ATCTTTTGTAGGCAATTCTT+TGG - chr4.2:39580778-39580797 None:intergenic 30.0%
! CATTTAAGGTTATGTTTGGA+TGG + chr4.2:39581608-39581627 MS.gene003921:CDS 30.0%
! CTTTTAGTACTAAATCCATC+AGG + chr4.2:39582037-39582056 MS.gene003921:CDS 30.0%
! GATGGATTTAGTACTAAAAG+AGG - chr4.2:39582037-39582056 None:intergenic 30.0%
! GTATTGGTATTCTAGAAGTA+GGG + chr4.2:39581708-39581727 MS.gene003921:CDS 30.0%
! GTTATAGCAGATGATTTTGT+AGG + chr4.2:39580963-39580982 MS.gene003921:CDS 30.0%
!! AGTATTGGTATTCTAGAAGT+AGG + chr4.2:39581707-39581726 MS.gene003921:CDS 30.0%
!! ATTGTTGGAAGTATTAGTTC+AGG - chr4.2:39582463-39582482 None:intergenic 30.0%
!! GAATTAGTATCGATGTAATC+GGG - chr4.2:39582411-39582430 None:intergenic 30.0%
!! GGTTTCAAAGTCTTTTAAGT+TGG + chr4.2:39582722-39582741 MS.gene003921:CDS 30.0%
!! TTGTTGGAAGTATTAGTTCA+GGG - chr4.2:39582462-39582481 None:intergenic 30.0%
AGTAGAATACATGCTTGATG+TGG + chr4.2:39582270-39582289 MS.gene003921:CDS 35.0%
AGTGGAATGAACAATACACT+TGG + chr4.2:39581861-39581880 MS.gene003921:CDS 35.0%
ATGAAAACTAGAGATGGTAG+AGG + chr4.2:39581758-39581777 MS.gene003921:CDS 35.0%
CCATCTACTGTTATCACAAT+AGG + chr4.2:39581896-39581915 MS.gene003921:CDS 35.0%
CCTATTGTGATAACAGTAGA+TGG - chr4.2:39581899-39581918 None:intergenic 35.0%
GAAAACAGGAGAAGTTCAAT+TGG + chr4.2:39582066-39582085 MS.gene003921:CDS 35.0%
GAATATGGAACTTTAGATGG+AGG + chr4.2:39582506-39582525 MS.gene003921:CDS 35.0%
GAGACAAATCAAAGGATTCA+AGG + chr4.2:39581948-39581967 MS.gene003921:CDS 35.0%
GCTTATTGCGTAGCAAAATT+CGG + chr4.2:39581791-39581810 MS.gene003921:CDS 35.0%
GGTTGTTGAAGGTGAAAAAA+AGG + chr4.2:39581562-39581581 MS.gene003921:CDS 35.0%
GTGGAATGAACAATACACTT+GGG + chr4.2:39581862-39581881 MS.gene003921:CDS 35.0%
GTGTATTGTTCATTCCACTT+TGG - chr4.2:39581860-39581879 None:intergenic 35.0%
TAAGGTTATGTTTGGATGGA+GGG + chr4.2:39581612-39581631 MS.gene003921:CDS 35.0%
TATCAACGATTGTCCTAGTT+CGG - chr4.2:39581829-39581848 None:intergenic 35.0%
TCACAAAAACTTCTGGATAC+CGG - chr4.2:39581289-39581308 None:intergenic 35.0%
TCTTCCACGGTTAAAACTAA+AGG - chr4.2:39581422-39581441 None:intergenic 35.0%
TGAAAACTAGAGATGGTAGA+GGG + chr4.2:39581759-39581778 MS.gene003921:CDS 35.0%
TGACTTCTTCTCAAAATGCT+TGG - chr4.2:39580859-39580878 None:intergenic 35.0%
TTAAGGTTATGTTTGGATGG+AGG + chr4.2:39581611-39581630 MS.gene003921:CDS 35.0%
TTAATGCTTGCAGTTTGGAT+GGG + chr4.2:39581098-39581117 MS.gene003921:CDS 35.0%
TTATCGAGTTTGATCGCTTT+CGG + chr4.2:39582352-39582371 MS.gene003921:CDS 35.0%
TTGATGTGGATTCACATATG+TGG + chr4.2:39582284-39582303 MS.gene003921:CDS 35.0%
! AAACTCTTCGTCTAGTTCAT+CGG - chr4.2:39582587-39582606 None:intergenic 35.0%
! CAAGTTGTGTTACTAATCAC+TGG + chr4.2:39582820-39582839 MS.gene003921:CDS 35.0%
! GGATGAATGTAGTGCATTTT+CGG - chr4.2:39582154-39582173 None:intergenic 35.0%
! GTATCCAGAAGTTTTTGTGA+AGG + chr4.2:39581289-39581308 MS.gene003921:CDS 35.0%
! TACGATCGATTAAGAAGCAT+CGG + chr4.2:39582652-39582671 MS.gene003921:CDS 35.0%
! TTTTTGTGAAGGTTGCTCTA+GGG + chr4.2:39581300-39581319 MS.gene003921:CDS 35.0%
!! TTGATAGCTTTAGTCCAAAG+TGG + chr4.2:39581843-39581862 MS.gene003921:CDS 35.0%
!! TTTAAGTTGGAGAGATCCAA+GGG + chr4.2:39582735-39582754 MS.gene003921:CDS 35.0%
!!! CTACCATCTCTAGTTTTCAT+CGG - chr4.2:39581758-39581777 None:intergenic 35.0%
!!! TTTTAAGTTGGAGAGATCCA+AGG + chr4.2:39582734-39582753 MS.gene003921:CDS 35.0%
AAAGGATTCAAGGATAGGGA+AGG + chr4.2:39581958-39581977 MS.gene003921:CDS 40.0%
ACATGGAGGAGACAAATCAA+AGG + chr4.2:39581940-39581959 MS.gene003921:CDS 40.0%
ACTACTTCTTTCCTTAACGG+TGG - chr4.2:39582253-39582272 None:intergenic 40.0%
AGGACACCAAATTTGCAAGT+AGG + chr4.2:39581582-39581601 MS.gene003921:CDS 40.0%
AGGGCAAACTCATGAGAATT+TGG - chr4.2:39580645-39580664 None:intergenic 40.0%
AGTGAAGCTTGGAAACTACA+AGG + chr4.2:39580827-39580846 MS.gene003921:CDS 40.0%
ATAGGTGATCTTGCAACTCA+AGG + chr4.2:39582694-39582713 MS.gene003921:CDS 40.0%
ATCTTGCAACTCAAGGAGAA+AGG + chr4.2:39582701-39582720 MS.gene003921:CDS 40.0%
ATGCCGATGAAAACTAGAGA+TGG + chr4.2:39581752-39581771 MS.gene003921:CDS 40.0%
CAGAACAAAGATGAAACGCT+AGG + chr4.2:39581452-39581471 MS.gene003921:CDS 40.0%
CAGCTATGGAAGTCAAGTAT+TGG + chr4.2:39581692-39581711 MS.gene003921:CDS 40.0%
CATTTGTTCGACTAGGTCAT+AGG - chr4.2:39580727-39580746 None:intergenic 40.0%
CCAAGCTTCACTTCAACATA+GGG - chr4.2:39580819-39580838 None:intergenic 40.0%
CTATCTGGTGGTATACGTTT+CGG - chr4.2:39581017-39581036 None:intergenic 40.0%
GAGAAGTTCAATTGGCTGTA+AGG + chr4.2:39582074-39582093 MS.gene003921:CDS 40.0%
GAGAGTTAATGCTTGCAGTT+TGG + chr4.2:39581093-39581112 MS.gene003921:CDS 40.0%
GATAGACTAGTGTCCATATG+TGG - chr4.2:39582544-39582563 None:intergenic 40.0%
GCAAACTCATGAGAATTTGG+TGG - chr4.2:39580642-39580661 None:intergenic 40.0%
GCAACCTTCACAAAAACTTC+TGG - chr4.2:39581296-39581315 None:intergenic 40.0%
GCACTACATTCATCCCTTAT+CGG + chr4.2:39582159-39582178 MS.gene003921:CDS 40.0%
GGAAGTTTCTGTCTGAATCT+AGG - chr4.2:39582865-39582884 None:intergenic 40.0%
GGATAGGGAAGGTAAGAATT+AGG + chr4.2:39581969-39581988 MS.gene003921:CDS 40.0%
GGTATTGCATTTGTTCGACT+AGG - chr4.2:39580734-39580753 None:intergenic 40.0%
GTAGGGATTATAAGTGCACA+CGG + chr4.2:39581725-39581744 MS.gene003921:CDS 40.0%
GTGAAGCTTGGAAACTACAA+GGG + chr4.2:39580828-39580847 MS.gene003921:CDS 40.0%
GTGTATGATTCCTTTGCAGA+TGG + chr4.2:39581478-39581497 MS.gene003921:CDS 40.0%
GTTAATGCTTGCAGTTTGGA+TGG + chr4.2:39581097-39581116 MS.gene003921:CDS 40.0%
GTTTGATCGCTTTCGGAAAA+TGG + chr4.2:39582359-39582378 MS.gene003921:CDS 40.0%
TAAAGGTTCCTCAAATGGCT+CGG - chr4.2:39581405-39581424 None:intergenic 40.0%
TAGCAAAATTCGGACAGAAG+TGG + chr4.2:39581801-39581820 MS.gene003921:CDS 40.0%
TAGGGATTATAAGTGCACAC+GGG + chr4.2:39581726-39581745 MS.gene003921:CDS 40.0%
TATACCATTGTGGAGCCAAA+GGG - chr4.2:39581040-39581059 None:intergenic 40.0%
TCCAAGCTTCACTTCAACAT+AGG - chr4.2:39580820-39580839 None:intergenic 40.0%
TGATTCAGCTCGATCATCTA+AGG + chr4.2:39582182-39582201 MS.gene003921:CDS 40.0%
TGGTTCCAAGTGATAAAAGC+CGG + chr4.2:39581267-39581286 MS.gene003921:CDS 40.0%
TTCTCATGAGTTTGCCCTTA+AGG + chr4.2:39580647-39580666 MS.gene003921:CDS 40.0%
TTGCCTACAAAAGATGTCAC+TGG + chr4.2:39580783-39580802 MS.gene003921:CDS 40.0%
TTTACTTGTCTCCCAAGCTT+TGG + chr4.2:39581210-39581229 MS.gene003921:CDS 40.0%
! AACTCTTCGTCTAGTTCATC+GGG - chr4.2:39582586-39582605 None:intergenic 40.0%
! AGCAGATGATTTTGTAGGGA+GGG + chr4.2:39580968-39580987 MS.gene003921:CDS 40.0%
! ATGAGGCATTTCCTGATTCT+TGG + chr4.2:39581132-39581151 MS.gene003921:CDS 40.0%
! CTACCAGTGACATCTTTTGT+AGG - chr4.2:39580789-39580808 None:intergenic 40.0%
! GGGAGAGTTCAAAGTGTTAT+AGG + chr4.2:39582676-39582695 MS.gene003921:CDS 40.0%
! GTTTTTGTGAAGGTTGCTCT+AGG + chr4.2:39581299-39581318 MS.gene003921:CDS 40.0%
! TAGCAGATGATTTTGTAGGG+AGG + chr4.2:39580967-39580986 MS.gene003921:CDS 40.0%
! TTTTCGCCTTCTCCAAAGAT+CGG + chr4.2:39580898-39580917 MS.gene003921:CDS 40.0%
!! AGTTTTAACCGTGGAAGACA+GGG + chr4.2:39581424-39581443 MS.gene003921:CDS 40.0%
!! ATCGATTAAGAAGCATCGGA+GGG + chr4.2:39582656-39582675 MS.gene003921:CDS 40.0%
!! GAGAAGCATTTGGTTGTTGA+AGG + chr4.2:39581551-39581570 MS.gene003921:CDS 40.0%
!! GCATAATCTCGAGAAGCATT+TGG + chr4.2:39581541-39581560 MS.gene003921:CDS 40.0%
!!! GGAACCTTTAGTTTTAACCG+TGG + chr4.2:39581415-39581434 MS.gene003921:CDS 40.0%
!!! TAGTTTTAACCGTGGAAGAC+AGG + chr4.2:39581423-39581442 MS.gene003921:CDS 40.0%
ACCCTGACATACCAAAGCTT+GGG - chr4.2:39581224-39581243 None:intergenic 45.0%
AGAAGAAGTCAAATCCCCAG+TGG + chr4.2:39580868-39580887 MS.gene003921:CDS 45.0%
AGACTAGTGTCCATATGTGG+AGG - chr4.2:39582541-39582560 None:intergenic 45.0%
ATCGAGCTGAATCACCGATA+AGG - chr4.2:39582176-39582195 None:intergenic 45.0%
CATTCTGATGCAGCAATGGT+TGG + chr4.2:39581155-39581174 MS.gene003921:CDS 45.0%
CCATCAGGTGTGAAGAAAAC+AGG + chr4.2:39582052-39582071 MS.gene003921:CDS 45.0%
CCCTATGTTGAAGTGAAGCT+TGG + chr4.2:39580816-39580835 MS.gene003921:CDS 45.0%
CTATACCATTGTGGAGCCAA+AGG - chr4.2:39581041-39581060 None:intergenic 45.0%
CTCATCACAGTAGCGATCTT+AGG + chr4.2:39581657-39581676 MS.gene003921:CDS 45.0%
CTTTGACGACACGAACATAG+AGG - chr4.2:39580755-39580774 None:intergenic 45.0%
GACTAGTGTCCATATGTGGA+GGG - chr4.2:39582540-39582559 None:intergenic 45.0%
GCATCAGAATGCCAAGAATC+AGG - chr4.2:39581146-39581165 None:intergenic 45.0%
GGTCAATGTAATCGAAGCTC+AGG + chr4.2:39581241-39581260 MS.gene003921:CDS 45.0%
TATACCACCAGATAGCCCTT+TGG + chr4.2:39581022-39581041 MS.gene003921:CDS 45.0%
TATAGGCTCGAAGATCGCAA+AGG + chr4.2:39581056-39581075 MS.gene003921:CDS 45.0%
TCGAGCTGAATCACCGATAA+GGG - chr4.2:39582175-39582194 None:intergenic 45.0%
TCTCATTCGAACAATGTCCG+AGG - chr4.2:39582632-39582651 None:intergenic 45.0%
TCTTCGAGCCTATACCATTG+TGG - chr4.2:39581050-39581069 None:intergenic 45.0%
TGATGCAGCAATGGTTGGAT+CGG + chr4.2:39581160-39581179 MS.gene003921:CDS 45.0%
TGCAAGCATTAACTCTCCCT+TGG - chr4.2:39581090-39581109 None:intergenic 45.0%
TGCTACGCAATAAGCATCTG+TGG - chr4.2:39581786-39581805 None:intergenic 45.0%
TGTAATCGAAGCTCAGGACT+TGG + chr4.2:39581247-39581266 MS.gene003921:CDS 45.0%
TTATGCCACCTAGTGTTCAC+CGG - chr4.2:39581527-39581546 None:intergenic 45.0%
TTCCTTTGCAGATGGTGCAA+AGG + chr4.2:39581486-39581505 MS.gene003921:CDS 45.0%
TTGGCATTCTGATGCAGCAA+TGG + chr4.2:39581151-39581170 MS.gene003921:CDS 45.0%
! ATGATTTTGTAGGGAGGGTG+TGG + chr4.2:39580973-39580992 MS.gene003921:CDS 45.0%
! CCTGTTTTCTTCACACCTGA+TGG - chr4.2:39582055-39582074 None:intergenic 45.0%
! CGACACAAATTGTGTCGATG+AGG + chr4.2:39582212-39582231 MS.gene003921:CDS 45.0%
! CTTTGGCTCCACAATGGTAT+AGG + chr4.2:39581039-39581058 MS.gene003921:CDS 45.0%
! TCCCAAGCTTTGGTATGTCA+GGG + chr4.2:39581220-39581239 MS.gene003921:CDS 45.0%
!! ACAAAAAGTGTCGTAGCCCT+TGG - chr4.2:39582754-39582773 None:intergenic 45.0%
!! GATCGATTAAGAAGCATCGG+AGG + chr4.2:39582655-39582674 MS.gene003921:CDS 45.0%
!!! GGATACCGGCTTTTATCACT+TGG - chr4.2:39581275-39581294 None:intergenic 45.0%
AAGGAGACAACGCCGAACAT+TGG + chr4.2:39580666-39580685 MS.gene003921:CDS 50.0%
AAGGCGGTTAGACCATAAGC+CGG + chr4.2:39581505-39581524 MS.gene003921:CDS 50.0%
ACCATAAGCCGGTGAACACT+AGG + chr4.2:39581516-39581535 MS.gene003921:CDS 50.0%
AGAAGCCTGGATCCGATCTT+TGG - chr4.2:39580913-39580932 None:intergenic 50.0%
AGGCGAAAACCTGATTCCAC+TGG - chr4.2:39580887-39580906 None:intergenic 50.0%
ATAAGCCGGTGAACACTAGG+TGG + chr4.2:39581519-39581538 MS.gene003921:CDS 50.0%
ATGTCCGAGGATCGTGATGT+AGG - chr4.2:39582619-39582638 None:intergenic 50.0%
CAGTAGCGATCTTAGGCCAA+CGG + chr4.2:39581664-39581683 MS.gene003921:CDS 50.0%
CGCAAAGGTGAGAAAGCCAA+GGG + chr4.2:39581071-39581090 MS.gene003921:CDS 50.0%
CTTCTCCAAAGATCGGATCC+AGG + chr4.2:39580905-39580924 MS.gene003921:CDS 50.0%
CTTTGCAGATGGTGCAAAGG+CGG + chr4.2:39581489-39581508 MS.gene003921:CDS 50.0%
GACAGAAGTGGATCCGAACT+AGG + chr4.2:39581813-39581832 MS.gene003921:CDS 50.0%
GACCCTGACATACCAAAGCT+TGG - chr4.2:39581225-39581244 None:intergenic 50.0%
GATGGGAACTCAAGCAGATG+AGG + chr4.2:39581115-39581134 MS.gene003921:CDS 50.0%
GCGAAAACCTGATTCCACTG+GGG - chr4.2:39580885-39580904 None:intergenic 50.0%
GGCGAAAACCTGATTCCACT+GGG - chr4.2:39580886-39580905 None:intergenic 50.0%
GTCAAATCCCCAGTGGAATC+AGG + chr4.2:39580875-39580894 MS.gene003921:CDS 50.0%
GTTCCCTACATCACGATCCT+CGG + chr4.2:39582612-39582631 MS.gene003921:CDS 50.0%
GTTCGGCGTTGTCTCCTTAA+GGG - chr4.2:39580664-39580683 None:intergenic 50.0%
TCACCTCCAAAACAGAAGCC+TGG - chr4.2:39580926-39580945 None:intergenic 50.0%
TCGCAAAGGTGAGAAAGCCA+AGG + chr4.2:39581070-39581089 MS.gene003921:CDS 50.0%
TGTCCGAGGATCGTGATGTA+GGG - chr4.2:39582618-39582637 None:intergenic 50.0%
TGTTCGGCGTTGTCTCCTTA+AGG - chr4.2:39580665-39580684 None:intergenic 50.0%
TTAACCGTGGAAGACAGGGT+TGG + chr4.2:39581428-39581447 MS.gene003921:CDS 50.0%
TTCATCGGGAAAAGCTGCGT+CGG - chr4.2:39582572-39582591 None:intergenic 50.0%
TTCGACTAGGTCATAGGTGC+AGG - chr4.2:39580721-39580740 None:intergenic 50.0%
! ATAGCCCTTTGGCTCCACAA+TGG + chr4.2:39581033-39581052 MS.gene003921:CDS 50.0%
! CTCCCAAGCTTTGGTATGTC+AGG + chr4.2:39581219-39581238 MS.gene003921:CDS 50.0%
! CTGGATCCGATCTTTGGAGA+AGG - chr4.2:39580907-39580926 None:intergenic 50.0%
! TAGTGCATTTTCGGCAGCAG+CGG - chr4.2:39582145-39582164 None:intergenic 50.0%
! TCGGATCCAGGCTTCTGTTT+TGG + chr4.2:39580917-39580936 MS.gene003921:CDS 50.0%
!! ACCTAGTGTTCACCGGCTTA+TGG - chr4.2:39581520-39581539 None:intergenic 50.0%
!! GATCCAGGCTTCTGTTTTGG+AGG + chr4.2:39580920-39580939 MS.gene003921:CDS 50.0%
!! TCCATATGTGGAGGGTGTCT+TGG - chr4.2:39582532-39582551 None:intergenic 50.0%
AACGCCGAACATTGGAGCAG+GGG + chr4.2:39580674-39580693 MS.gene003921:CDS 55.0%
ACAACGCCGAACATTGGAGC+AGG + chr4.2:39580672-39580691 MS.gene003921:CDS 55.0%
ACTGCCCCTGCTCCAATGTT+CGG - chr4.2:39580681-39580700 None:intergenic 55.0%
CAACGCCGAACATTGGAGCA+GGG + chr4.2:39580673-39580692 MS.gene003921:CDS 55.0%
CGCCTTTGCACCATCTGCAA+AGG - chr4.2:39581491-39581510 None:intergenic 55.0%
CTGTCCAACCCTGTCTTCCA+CGG - chr4.2:39581435-39581454 None:intergenic 55.0%
GCCAAGACACCCTCCACATA+TGG + chr4.2:39582528-39582547 MS.gene003921:CDS 55.0%
TCCTTAACGGTGGCTCAGCT+CGG - chr4.2:39582243-39582262 None:intergenic 55.0%
TGTGGAGCCAAAGGGCTATC+TGG - chr4.2:39581032-39581051 None:intergenic 55.0%
TTCCATAGCTGCTTCGCCGT+TGG - chr4.2:39581683-39581702 None:intergenic 55.0%
GGAGCCAAAGGGCTATCTGG+TGG - chr4.2:39581029-39581048 None:intergenic 60.0%
TGGAGCAGGGGCAGTCACAA+AGG + chr4.2:39580686-39580705 MS.gene003921:CDS 60.0%
TGTCGCAGCCGAGCCATTTG+AGG + chr4.2:39581394-39581413 MS.gene003921:CDS 60.0%
! CATTTTCGGCAGCAGCGGCA+TGG - chr4.2:39582140-39582159 None:intergenic 60.0%
!! GAGTTGACTCGTCCAGCACG+TGG - chr4.2:39581640-39581659 None:intergenic 60.0%
GCCGAGCTGAGCCACCGTTA+AGG + chr4.2:39582239-39582258 MS.gene003921:CDS 65.0%
GGCCAACGGCGAAGCAGCTA+TGG + chr4.2:39581678-39581697 MS.gene003921:CDS 65.0%
!! GGATGGAGGGTACCACGTGC+TGG + chr4.2:39581625-39581644 MS.gene003921:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 39580630 39582935 39580630 ID=MS.gene003921
chr4.2 mRNA 39580630 39582935 39580630 ID=MS.gene003921.t1;Parent=MS.gene003921
chr4.2 exon 39580630 39582935 39580630 ID=MS.gene003921.t1.exon1;Parent=MS.gene003921.t1
chr4.2 CDS 39580630 39582935 39580630 ID=cds.MS.gene003921.t1;Parent=MS.gene003921.t1
Gene Sequence

>MS.gene003921

ATGCAGAAGCCACCAAATTCTCATGAGTTTGCCCTTAAGGAGACAACGCCGAACATTGGAGCAGGGGCAGTCACAAAGGACAAGCTATCCTGCACCTATGACCTAGTCGAACAAATGCAATACCTCTATGTTCGTGTCGTCAAAGCCAAAGAATTGCCTACAAAAGATGTCACTGGTAGTCTTGATCCCTATGTTGAAGTGAAGCTTGGAAACTACAAGGGAATTACCAAGCATTTTGAGAAGAAGTCAAATCCCCAGTGGAATCAGGTTTTCGCCTTCTCCAAAGATCGGATCCAGGCTTCTGTTTTGGAGGTGATTGTCAAAGATAAAGATGTTATAGCAGATGATTTTGTAGGGAGGGTGTGGTTTGATCTGAATGATATACCGAAACGTATACCACCAGATAGCCCTTTGGCTCCACAATGGTATAGGCTCGAAGATCGCAAAGGTGAGAAAGCCAAGGGAGAGTTAATGCTTGCAGTTTGGATGGGAACTCAAGCAGATGAGGCATTTCCTGATTCTTGGCATTCTGATGCAGCAATGGTTGGATCGGAAGCAGTTGCAAATATAAGATCAAAAGTTTACTTGTCTCCCAAGCTTTGGTATGTCAGGGTCAATGTAATCGAAGCTCAGGACTTGGTTCCAAGTGATAAAAGCCGGTATCCAGAAGTTTTTGTGAAGGTTGCTCTAGGGAATCAGTTTTCAAGAACTAGAATATCTCAACTGAAGACCATAAATCCTATATGGAATGAGGATTTGATGTTTGTCGCAGCCGAGCCATTTGAGGAACCTTTAGTTTTAACCGTGGAAGACAGGGTTGGACAGAACAAAGATGAAACGCTAGGAAAGTGTATGATTCCTTTGCAGATGGTGCAAAGGCGGTTAGACCATAAGCCGGTGAACACTAGGTGGCATAATCTCGAGAAGCATTTGGTTGTTGAAGGTGAAAAAAAGGACACCAAATTTGCAAGTAGGATACATTTAAGGTTATGTTTGGATGGAGGGTACCACGTGCTGGACGAGTCAACTCATCACAGTAGCGATCTTAGGCCAACGGCGAAGCAGCTATGGAAGTCAAGTATTGGTATTCTAGAAGTAGGGATTATAAGTGCACACGGGTTGATGCCGATGAAAACTAGAGATGGTAGAGGGACCACAGATGCTTATTGCGTAGCAAAATTCGGACAGAAGTGGATCCGAACTAGGACAATCGTTGATAGCTTTAGTCCAAAGTGGAATGAACAATACACTTGGGAAGTATTTGATCCATCTACTGTTATCACAATAGGTGTCTTTGATAACAATCATTTACATGGAGGAGACAAATCAAAGGATTCAAGGATAGGGAAGGTAAGAATTAGGTTATCGACTCTTGAAACTGATAGAGTTTACACACATTCCTATCCTCTTTTAGTACTAAATCCATCAGGTGTGAAGAAAACAGGAGAAGTTCAATTGGCTGTAAGGTTCACAAACTCATCTTACTTCAACATGTTGTATATGTATTCCATGCCGCTGCTGCCGAAAATGCACTACATTCATCCCTTATCGGTGATTCAGCTCGATCATCTAAGGCATCAAGCGACACAAATTGTGTCGATGAGGCTGAGCCGAGCTGAGCCACCGTTAAGGAAAGAAGTAGTAGAATACATGCTTGATGTGGATTCACATATGTGGAGTATGAGAAGAAGCAAAGCCAATTTCTTCAGAATAATGAAAGTTTTATCGAGTTTGATCGCTTTCGGAAAATGGTTTGATCAAATTTGCAATTGGAAAAACCCGATTACATCGATACTAATTCATATCCTATTCATAATATTGGTTCTTTACCCTGAACTAATACTTCCAACAATTTTCTTATACATGTTCATGATTGGAATATGGAACTTTAGATGGAGGCCAAGACACCCTCCACATATGGACACTAGTCTATCTCATGCCGACGCAGCTTTTCCCGATGAACTAGACGAAGAGTTTGATTCGTTCCCTACATCACGATCCTCGGACATTGTTCGAATGAGATACGATCGATTAAGAAGCATCGGAGGGAGAGTTCAAAGTGTTATAGGTGATCTTGCAACTCAAGGAGAAAGGTTTCAAAGTCTTTTAAGTTGGAGAGATCCAAGGGCTACGACACTTTTTGTGACATTCTGTTTTGTTGCTGCTATGATTCTTTATGTTACTCCTTTTCAAGTTGTGTTACTAATCACTGGATTTTATGTTCTGAGACATCCTAGATTCAGACAGAAACTTCCATCAGTTCCTCTTAATTTCTTTAGGAGGTTGCCTGCTAGATCAGATAGCAT
Protein sequence

>MS.gene003921.t1

MQKPPNSHEFALKETTPNIGAGAVTKDKLSCTYDLVEQMQYLYVRVVKAKELPTKDVTGSLDPYVEVKLGNYKGITKHFEKKSNPQWNQVFAFSKDRIQASVLEVIVKDKDVIADDFVGRVWFDLNDIPKRIPPDSPLAPQWYRLEDRKGEKAKGELMLAVWMGTQADEAFPDSWHSDAAMVGSEAVANIRSKVYLSPKLWYVRVNVIEAQDLVPSDKSRYPEVFVKVALGNQFSRTRISQLKTINPIWNEDLMFVAAEPFEEPLVLTVEDRVGQNKDETLGKCMIPLQMVQRRLDHKPVNTRWHNLEKHLVVEGEKKDTKFASRIHLRLCLDGGYHVLDESTHHSSDLRPTAKQLWKSSIGILEVGIISAHGLMPMKTRDGRGTTDAYCVAKFGQKWIRTRTIVDSFSPKWNEQYTWEVFDPSTVITIGVFDNNHLHGGDKSKDSRIGKVRIRLSTLETDRVYTHSYPLLVLNPSGVKKTGEVQLAVRFTNSSYFNMLYMYSMPLLPKMHYIHPLSVIQLDHLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMKVLSSLIAFGKWFDQICNWKNPITSILIHILFIILVLYPELILPTIFLYMFMIGIWNFRWRPRHPPHMDTSLSHADAAFPDELDEEFDSFPTSRSSDIVRMRYDRLRSIGGRVQSVIGDLATQGERFQSLLSWRDPRATTLFVTFCFVAAMILYVTPFQVVLLITGFYVLRHPRFRQKLPSVPLNFFRRLPARSDS