Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97681.t1 | XP_013442140.1 | 99.4 | 798 | 4 | 1 | 1 | 798 | 1 | 797 | 0.00E+00 | 1619 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97681.t1 | Q9FL59 | 81.1 | 785 | 147 | 1 | 14 | 798 | 11 | 794 | 0.0e+00 | 1351.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97681.t1 | A0A072TRG9 | 99.4 | 798 | 4 | 1 | 1 | 798 | 1 | 797 | 0.0e+00 | 1619.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene97685 | MS.gene97681 | PPI |
| MS.gene04595 | MS.gene97681 | PPI |
| MS.gene003921 | MS.gene97681 | PPI |
| MS.gene97681 | MS.gene54603 | PPI |
| MS.gene056344 | MS.gene97681 | PPI |
| MS.gene018791 | MS.gene97681 | PPI |
| MS.gene57362 | MS.gene97681 | PPI |
| MS.gene056972 | MS.gene97681 | PPI |
| MS.gene97681 | MS.gene072379 | PPI |
| MS.gene97681 | MS.gene90010 | PPI |
| MS.gene97681 | MS.gene017959 | PPI |
| MS.gene84943 | MS.gene97681 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97681.t1 | MTR_0291s0010 | 99.373 | 798 | 4 | 1 | 1 | 798 | 1 | 797 | 0.0 | 1644 |
| MS.gene97681.t1 | MTR_3g027150 | 71.950 | 795 | 216 | 3 | 11 | 798 | 28 | 822 | 0.0 | 1247 |
| MS.gene97681.t1 | MTR_4g023460 | 71.824 | 795 | 220 | 3 | 6 | 798 | 350 | 1142 | 0.0 | 1240 |
| MS.gene97681.t1 | MTR_7g092770 | 67.468 | 790 | 239 | 6 | 10 | 798 | 3 | 775 | 0.0 | 1149 |
| MS.gene97681.t1 | MTR_0305s0020 | 67.215 | 790 | 240 | 8 | 10 | 798 | 3 | 774 | 0.0 | 1120 |
| MS.gene97681.t1 | MTR_4g066150 | 65.355 | 788 | 251 | 6 | 11 | 798 | 5 | 770 | 0.0 | 1080 |
| MS.gene97681.t1 | MTR_5g010390 | 62.389 | 787 | 279 | 6 | 15 | 798 | 235 | 1007 | 0.0 | 1059 |
| MS.gene97681.t1 | MTR_4g033215 | 59.671 | 791 | 301 | 5 | 9 | 798 | 271 | 1044 | 0.0 | 992 |
| MS.gene97681.t1 | MTR_8g031270 | 57.034 | 789 | 316 | 8 | 15 | 798 | 233 | 1003 | 0.0 | 955 |
| MS.gene97681.t1 | MTR_7g076900 | 56.426 | 817 | 316 | 10 | 4 | 798 | 215 | 1013 | 0.0 | 939 |
| MS.gene97681.t1 | MTR_4g057675 | 51.010 | 792 | 358 | 10 | 14 | 798 | 15 | 783 | 0.0 | 776 |
| MS.gene97681.t1 | MTR_4g107850 | 50.914 | 766 | 329 | 15 | 50 | 798 | 303 | 1038 | 0.0 | 757 |
| MS.gene97681.t1 | MTR_6g027540 | 49.153 | 767 | 341 | 14 | 50 | 798 | 274 | 1009 | 0.0 | 743 |
| MS.gene97681.t1 | MTR_4g071870 | 48.990 | 792 | 340 | 12 | 14 | 798 | 15 | 749 | 0.0 | 738 |
| MS.gene97681.t1 | MTR_6g028050 | 47.513 | 764 | 367 | 12 | 48 | 798 | 284 | 1026 | 0.0 | 718 |
| MS.gene97681.t1 | MTR_1g015540 | 43.550 | 783 | 407 | 13 | 26 | 792 | 4 | 767 | 0.0 | 635 |
| MS.gene97681.t1 | MTR_5g096980 | 40.445 | 764 | 420 | 15 | 47 | 798 | 23 | 763 | 0.0 | 561 |
| MS.gene97681.t1 | MTR_4g023250 | 65.385 | 130 | 43 | 1 | 668 | 797 | 1 | 128 | 9.04e-53 | 179 |
| MS.gene97681.t1 | MTR_4g023230 | 46.721 | 122 | 50 | 1 | 585 | 706 | 49 | 155 | 1.96e-31 | 120 |
| MS.gene97681.t1 | MTR_4g023390 | 47.115 | 104 | 33 | 1 | 671 | 774 | 16 | 97 | 2.01e-26 | 104 |
| MS.gene97681.t1 | MTR_4g023240 | 73.333 | 60 | 16 | 0 | 519 | 578 | 10 | 69 | 2.93e-23 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97681.t1 | AT5G06850 | 80.940 | 787 | 149 | 1 | 12 | 798 | 9 | 794 | 0.0 | 1374 |
| MS.gene97681.t1 | AT5G48060 | 71.429 | 791 | 211 | 6 | 12 | 798 | 257 | 1036 | 0.0 | 1207 |
| MS.gene97681.t1 | AT3G57880 | 67.342 | 790 | 238 | 9 | 10 | 798 | 3 | 773 | 0.0 | 1127 |
| MS.gene97681.t1 | AT3G57880 | 67.342 | 790 | 238 | 9 | 10 | 798 | 3 | 773 | 0.0 | 1127 |
| MS.gene97681.t1 | AT3G57880 | 67.342 | 790 | 238 | 9 | 10 | 798 | 3 | 773 | 0.0 | 1127 |
| MS.gene97681.t1 | AT3G57880 | 67.342 | 790 | 238 | 9 | 10 | 798 | 3 | 773 | 0.0 | 1127 |
| MS.gene97681.t1 | AT5G12970 | 65.570 | 790 | 248 | 7 | 10 | 798 | 3 | 769 | 0.0 | 1100 |
| MS.gene97681.t1 | AT1G51570 | 64.981 | 791 | 258 | 8 | 10 | 798 | 3 | 776 | 0.0 | 1098 |
| MS.gene97681.t1 | AT4G11610 | 61.845 | 802 | 279 | 8 | 1 | 798 | 233 | 1011 | 0.0 | 1053 |
| MS.gene97681.t1 | AT4G11610 | 61.845 | 802 | 279 | 8 | 1 | 798 | 229 | 1007 | 0.0 | 1052 |
| MS.gene97681.t1 | AT4G11610 | 61.845 | 802 | 279 | 8 | 1 | 798 | 96 | 874 | 0.0 | 1051 |
| MS.gene97681.t1 | AT1G22610 | 58.407 | 791 | 317 | 4 | 9 | 798 | 250 | 1029 | 0.0 | 993 |
| MS.gene97681.t1 | AT4G00700 | 56.767 | 761 | 317 | 7 | 43 | 798 | 253 | 1006 | 0.0 | 908 |
| MS.gene97681.t1 | AT4G00700 | 56.767 | 761 | 317 | 7 | 43 | 798 | 253 | 1006 | 0.0 | 908 |
| MS.gene97681.t1 | AT1G04150 | 54.064 | 812 | 325 | 14 | 5 | 798 | 231 | 1012 | 0.0 | 876 |
| MS.gene97681.t1 | AT3G61300 | 53.141 | 796 | 327 | 16 | 10 | 798 | 216 | 972 | 0.0 | 872 |
| MS.gene97681.t1 | AT4G20080 | 53.887 | 759 | 329 | 9 | 44 | 798 | 33 | 774 | 0.0 | 858 |
| MS.gene97681.t1 | AT1G74720 | 50.127 | 786 | 351 | 13 | 36 | 798 | 314 | 1081 | 0.0 | 764 |
| MS.gene97681.t1 | AT3G03680 | 49.483 | 774 | 336 | 15 | 50 | 798 | 274 | 1017 | 0.0 | 752 |
| MS.gene97681.t1 | AT5G17980 | 47.507 | 762 | 363 | 14 | 48 | 798 | 314 | 1049 | 0.0 | 717 |
| MS.gene97681.t1 | AT3G61720 | 37.272 | 821 | 452 | 19 | 12 | 798 | 4 | 795 | 1.74e-165 | 499 |
| MS.gene97681.t1 | AT5G03435 | 37.657 | 794 | 427 | 24 | 12 | 793 | 4 | 741 | 5.33e-157 | 475 |
| MS.gene97681.t1 | AT5G03435 | 40.304 | 593 | 308 | 16 | 12 | 598 | 4 | 556 | 5.83e-129 | 396 |
| MS.gene97681.t1 | AT5G44760 | 44.068 | 413 | 172 | 12 | 15 | 421 | 5 | 364 | 1.80e-100 | 319 |
| MS.gene97681.t1 | AT5G44760 | 35.766 | 137 | 39 | 1 | 564 | 700 | 364 | 451 | 2.19e-17 | 86.3 |
| MS.gene97681.t1 | AT1G03370 | 31.707 | 123 | 80 | 3 | 59 | 180 | 3 | 122 | 4.02e-11 | 67.4 |
| MS.gene97681.t1 | AT1G03370 | 31.707 | 123 | 80 | 3 | 59 | 180 | 3 | 122 | 5.90e-11 | 67.0 |
Find 148 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCGAAACTTTGGTATTTA+AGG | 0.059181 | 1.1:+39648779 | MS.gene97681:CDS |
| GCACACATAATTTACCTTTA+TGG | 0.094538 | 1.1:+39649702 | MS.gene97681:CDS |
| TCAGATTCAGCTTCAGTTAA+AGG | 0.151058 | 1.1:+39648718 | MS.gene97681:CDS |
| GTATATTGTTCATTCCATTT+TGG | 0.214849 | 1.1:-39649426 | None:intergenic |
| TCATTGGAATATGGAACTTT+AGG | 0.234436 | 1.1:+39650087 | MS.gene97681:CDS |
| ACATGTTTCTCATTGGAATA+TGG | 0.244483 | 1.1:+39650078 | MS.gene97681:CDS |
| AAGATTGTTATTTCTGTTGC+TGG | 0.245800 | 1.1:+39650407 | MS.gene97681:CDS |
| TTACTTGTTCTAAAACCTTC+TGG | 0.249201 | 1.1:+39649624 | MS.gene97681:CDS |
| GGTATCTTAAACTATCTAAT+TGG | 0.260719 | 1.1:-39649773 | None:intergenic |
| TGGATTTGGTGGCAATTCTT+TGG | 0.274389 | 1.1:-39648329 | None:intergenic |
| TATCACATCTTGTGCCTTAG+AGG | 0.279796 | 1.1:-39650207 | None:intergenic |
| GCGAAAACTTGCTTCCATTC+GGG | 0.282351 | 1.1:-39648436 | None:intergenic |
| CACCTTAGAGTTTGTCTTGA+AGG | 0.286543 | 1.1:+39649177 | MS.gene97681:CDS |
| ATTGTTGGTAGGATCAATTC+TGG | 0.294073 | 1.1:-39650047 | None:intergenic |
| TCCGAAACTTTGGTATTTAA+GGG | 0.315843 | 1.1:+39648780 | MS.gene97681:CDS |
| TAATCATCTGTGTTTGGCTT+TGG | 0.316111 | 1.1:-39648157 | None:intergenic |
| CCTTGCACAGTCATAACTTT+TGG | 0.316380 | 1.1:+39649465 | MS.gene97681:CDS |
| GGCTTCAAGCTTTGCTTAGT+TGG | 0.317783 | 1.1:+39650309 | MS.gene97681:CDS |
| ACCCTTAAATACCAAAGTTT+CGG | 0.329185 | 1.1:-39648781 | None:intergenic |
| ACAGAAATAACAATCTTAAA+AGG | 0.330313 | 1.1:-39650401 | None:intergenic |
| CCACATTGGATTCGGCGTTT+TGG | 0.333074 | 1.1:-39648914 | None:intergenic |
| GGGTAATATCTATGAGTAAA+TGG | 0.335854 | 1.1:+39649946 | MS.gene97681:CDS |
| AGCTTGTAATCATCTGTGTT+TGG | 0.339723 | 1.1:-39648163 | None:intergenic |
| ACGCTTCCTGTGACTGGATT+TGG | 0.340820 | 1.1:-39648343 | None:intergenic |
| GCTTATTGTGTAGCAAAATA+TGG | 0.350897 | 1.1:+39649360 | MS.gene97681:CDS |
| GAAGAGCAGAACCACCTCTT+AGG | 0.360465 | 1.1:+39649826 | MS.gene97681:CDS |
| AACTCTTCATCTAGTTCATC+TGG | 0.366933 | 1.1:-39650170 | None:intergenic |
| GGCTTAGGCATCCAAAGTTT+AGG | 0.369172 | 1.1:+39650438 | MS.gene97681:CDS |
| TCGTTTATCAACTTTAGAAA+TGG | 0.370382 | 1.1:+39649575 | MS.gene97681:CDS |
| GTTGGAGAACAAGGCGAGTC+CGG | 0.373824 | 1.1:+39648993 | MS.gene97681:CDS |
| CCAACTTTCACTTCAACATA+AGG | 0.378608 | 1.1:-39648370 | None:intergenic |
| CGCGAAAACTTGCTTCCATT+CGG | 0.379563 | 1.1:-39648437 | None:intergenic |
| TTTCTCTACATGTTTCTCAT+TGG | 0.383690 | 1.1:+39650071 | MS.gene97681:CDS |
| GTGTTTGGCTTTGGAGCTGC+AGG | 0.385575 | 1.1:-39648148 | None:intergenic |
| TGGTACAACGTTGAAAGATT+TGG | 0.387221 | 1.1:+39649099 | MS.gene97681:CDS |
| TGCGGCGCCAAAGGACTATC+TGG | 0.389015 | 1.1:-39648586 | None:intergenic |
| CTATCTGGTGGAACTCTTGT+TGG | 0.399768 | 1.1:-39648571 | None:intergenic |
| CACCTTCAAGACAAACTCTA+AGG | 0.399784 | 1.1:-39649179 | None:intergenic |
| GTAGCTAGAGATGATTATAT+TGG | 0.404183 | 1.1:+39648520 | MS.gene97681:CDS |
| CAACTTTGGAAGCAACCAAT+TGG | 0.407270 | 1.1:+39649261 | MS.gene97681:CDS |
| GATAGGCTTAGGAGTGTTGC+TGG | 0.407272 | 1.1:+39650242 | MS.gene97681:CDS |
| TAGCAAAATATGGTATGAAA+TGG | 0.410325 | 1.1:+39649370 | MS.gene97681:CDS |
| GGAGGACAACGAGGCGGAAC+CGG | 0.416161 | 1.1:+39648226 | MS.gene97681:CDS |
| TCTTCGTTCCACATTGGATT+CGG | 0.417173 | 1.1:-39648922 | None:intergenic |
| GGCAACTTGCTCCTAAACTT+TGG | 0.423193 | 1.1:-39650449 | None:intergenic |
| GTGAAGTTATGTTAGCTGTT+TGG | 0.423606 | 1.1:+39648653 | MS.gene97681:CDS |
| ACCTAGACACCCTCCACATA+TGG | 0.424061 | 1.1:+39650115 | MS.gene97681:CDS |
| TCTAATTGGTTCACAGTGAA+TGG | 0.425729 | 1.1:-39649759 | None:intergenic |
| TGATAAGAATGAGGTATGAT+AGG | 0.433867 | 1.1:+39650225 | MS.gene97681:CDS |
| TTGATGTGGATTCACATATA+TGG | 0.435933 | 1.1:+39649871 | MS.gene97681:CDS |
| GGATCTACGCTTCCTGTGAC+TGG | 0.438103 | 1.1:-39648349 | None:intergenic |
| AAGAAATTGCTTGGCACAGA+AGG | 0.441455 | 1.1:-39650470 | None:intergenic |
| AGCAAAATATGGTATGAAAT+GGG | 0.446499 | 1.1:+39649371 | MS.gene97681:CDS |
| GGCGTTCTCGAAGGTGATAA+AGG | 0.447020 | 1.1:+39649126 | MS.gene97681:CDS |
| AACGTTGAAAGATTTGGTTT+TGG | 0.449052 | 1.1:+39649105 | MS.gene97681:CDS |
| AGATTGTTATTTCTGTTGCT+GGG | 0.455606 | 1.1:+39650408 | MS.gene97681:CDS |
| TTTATGTTAATCCGAAACTT+TGG | 0.456350 | 1.1:+39648770 | MS.gene97681:CDS |
| CCGACTTCAAGTATCCCAAT+TGG | 0.457472 | 1.1:-39649276 | None:intergenic |
| TTGGAGAACAAGGCGAGTCC+GGG | 0.462296 | 1.1:+39648994 | MS.gene97681:CDS |
| GAAGTAAAGGGTGTCCATAA+AGG | 0.467642 | 1.1:-39649716 | None:intergenic |
| GCCACAACTTCGTCTTTCCC+CGG | 0.471487 | 1.1:-39649012 | None:intergenic |
| TTGTACCACCGCGAATGCAC+CGG | 0.472389 | 1.1:-39649084 | None:intergenic |
| TTCTTCAAGAGGTTGCCATC+TGG | 0.472554 | 1.1:+39650488 | MS.gene97681:CDS |
| GACAATTGTCATTTAGGTGG+TGG | 0.473245 | 1.1:+39649495 | MS.gene97681:CDS |
| GAATGAGGTATGATAGGCTT+AGG | 0.474201 | 1.1:+39650231 | MS.gene97681:CDS |
| ATCATCGCCCGGTGCATTCG+CGG | 0.476775 | 1.1:+39649076 | MS.gene97681:CDS |
| ACATCTTGTGCCTTAGAGGT+TGG | 0.479165 | 1.1:-39650203 | None:intergenic |
| GGACTTTCACCAATGAAAAC+AGG | 0.481943 | 1.1:+39649315 | MS.gene97681:CDS |
| AACTTTGGAAGCAACCAATT+GGG | 0.484378 | 1.1:+39649262 | MS.gene97681:CDS |
| TTCCAAAGTTGTCTAGCAGT+TGG | 0.485379 | 1.1:-39649249 | None:intergenic |
| TCTTTCGCTGTAAAGCCAAC+CGG | 0.488325 | 1.1:-39648245 | None:intergenic |
| AGTTCCACCAGATAGTCCTT+TGG | 0.489398 | 1.1:+39648579 | MS.gene97681:CDS |
| ATGAACTTAAATTCTCAAGT+AGG | 0.491390 | 1.1:+39649151 | MS.gene97681:CDS |
| TGAACTAGTATTGTTGTCAC+TGG | 0.493829 | 1.1:-39649996 | None:intergenic |
| CGAAAACTTGCTTCCATTCG+GGG | 0.493876 | 1.1:-39648435 | None:intergenic |
| GAATCTGAATGCCATGCCTC+AGG | 0.494847 | 1.1:-39648703 | None:intergenic |
| CCTTATGTTGAAGTGAAAGT+TGG | 0.496099 | 1.1:+39648370 | MS.gene97681:CDS |
| AACCTCTTGAAGAAATTGCT+TGG | 0.498226 | 1.1:-39650479 | None:intergenic |
| GACCAACTGCTAGACAACTT+TGG | 0.501805 | 1.1:+39649247 | MS.gene97681:CDS |
| TCAACAACTTCTTTCCTAAG+AGG | 0.501997 | 1.1:-39649840 | None:intergenic |
| CTGCTACAATGTTCATAGCT+TGG | 0.502811 | 1.1:-39649794 | None:intergenic |
| TGCCAAGCAATTTCTTCAAG+AGG | 0.504743 | 1.1:+39650477 | MS.gene97681:CDS |
| CTCGAATTTGTTCAACGGCA+AGG | 0.512907 | 1.1:-39649043 | None:intergenic |
| TCCATATGTGGAGGGTGTCT+AGG | 0.524118 | 1.1:-39650116 | None:intergenic |
| TGTACCACCGCGAATGCACC+GGG | 0.530409 | 1.1:-39649083 | None:intergenic |
| AGTTTACAATATTAGATCAA+AGG | 0.534131 | 1.1:+39648747 | MS.gene97681:CDS |
| AAAGACACAAAGCCAGAGCT+AGG | 0.537262 | 1.1:+39648187 | MS.gene97681:CDS |
| CGTTGAACAAATTCGAGACT+CGG | 0.538730 | 1.1:+39649049 | MS.gene97681:CDS |
| CTATACCATTGCGGCGCCAA+AGG | 0.540068 | 1.1:-39648595 | None:intergenic |
| TCAGCTTCAGTTAAAGGCGA+AGG | 0.540642 | 1.1:+39648724 | MS.gene97681:CDS |
| CGTGCTGACGTTGGAGAACA+AGG | 0.541103 | 1.1:+39648984 | MS.gene97681:CDS |
| AGAAAACCTCGTGCTGACGT+TGG | 0.541212 | 1.1:+39648975 | MS.gene97681:CDS |
| TGTATCACTTATATACATTG+TGG | 0.546946 | 1.1:-39649223 | None:intergenic |
| GCGCCGCAATGGTATAGACT+AGG | 0.547237 | 1.1:+39648601 | MS.gene97681:CDS |
| CGCCGCAATGGTATAGACTA+GGG | 0.547437 | 1.1:+39648602 | MS.gene97681:CDS |
| ACAAGATCTTCGTTCCACAT+TGG | 0.557915 | 1.1:-39648928 | None:intergenic |
| AGAAGAAAACAAACCCCGAA+TGG | 0.558086 | 1.1:+39648422 | MS.gene97681:CDS |
| CTTCCTGTGACTGGATTTGG+TGG | 0.560390 | 1.1:-39648340 | None:intergenic |
| AGTTATGTTAGCTGTTTGGA+TGG | 0.565033 | 1.1:+39648657 | MS.gene97681:CDS |
| ATAGTCCTTTGGCGCCGCAA+TGG | 0.565983 | 1.1:+39648590 | MS.gene97681:CDS |
| TTTGACAATTGTCATTTAGG+TGG | 0.567553 | 1.1:+39649492 | MS.gene97681:CDS |
| GTCGGAATATTGAGTGCTCA+AGG | 0.570253 | 1.1:+39649294 | MS.gene97681:CDS |
| GACTCGGATGGATCATCGCC+CGG | 0.570812 | 1.1:+39649065 | MS.gene97681:CDS |
| ACAACTTCTTTCCTAAGAGG+TGG | 0.571006 | 1.1:-39649837 | None:intergenic |
| CCAAAAGTTATGACTGTGCA+AGG | 0.572940 | 1.1:-39649465 | None:intergenic |
| TTGCCACCAAATCCAGTCAC+AGG | 0.577826 | 1.1:+39648337 | MS.gene97681:CDS |
| CACAAGATGTGATAAGAATG+AGG | 0.578190 | 1.1:+39650216 | MS.gene97681:CDS |
| ATATCTATGAGTAAATGGCT+TGG | 0.584041 | 1.1:+39649951 | MS.gene97681:CDS |
| GTGAAAGTTGGCAACTACAA+AGG | 0.587577 | 1.1:+39648382 | MS.gene97681:CDS |
| AATGGAATGAACAATATACA+TGG | 0.588069 | 1.1:+39649430 | MS.gene97681:CDS |
| GAACAAATTCGAGACTCGGA+TGG | 0.591471 | 1.1:+39649053 | MS.gene97681:CDS |
| CTTCTGTCTTGTAACTGCTG+TGG | 0.594601 | 1.1:+39650364 | MS.gene97681:CDS |
| CTTTGACAACGCGAACATAG+AGG | 0.595677 | 1.1:-39648306 | None:intergenic |
| AAAGGTGAAACAAGAACAAG+AGG | 0.601357 | 1.1:+39648631 | MS.gene97681:CDS |
| ATGAAGCGTTTCCTGAGGCA+TGG | 0.601952 | 1.1:+39648692 | MS.gene97681:CDS |
| TGTTGAATACATGCTTGATG+TGG | 0.606283 | 1.1:+39649857 | MS.gene97681:CDS |
| GTTATGTTAGCTGTTTGGAT+GGG | 0.606349 | 1.1:+39648658 | MS.gene97681:CDS |
| TATAGACTAGGGAATTTGAA+AGG | 0.609327 | 1.1:+39648613 | MS.gene97681:CDS |
| CCAAAACGCCGAATCCAATG+TGG | 0.614361 | 1.1:+39648914 | MS.gene97681:CDS |
| AAAGGAGAAGATACAATCAT+CGG | 0.615131 | 1.1:+39648465 | MS.gene97681:CDS |
| TGTTCTCCAACGTCAGCACG+AGG | 0.616133 | 1.1:-39648981 | None:intergenic |
| TCACCAATGAAAACAGGCAA+TGG | 0.618152 | 1.1:+39649321 | MS.gene97681:CDS |
| CGAGTCTCGAATTTGTTCAA+CGG | 0.618223 | 1.1:-39649048 | None:intergenic |
| GGCTTGGTGAGGTACAAAAG+TGG | 0.626019 | 1.1:+39649967 | MS.gene97681:CDS |
| GACAACGAGGCGGAACCGGT+TGG | 0.626600 | 1.1:+39648230 | MS.gene97681:CDS |
| AGCTGATGAAGCGTTTCCTG+AGG | 0.631444 | 1.1:+39648687 | MS.gene97681:CDS |
| ATGGAATGAACAATATACAT+GGG | 0.631935 | 1.1:+39649431 | MS.gene97681:CDS |
| AACATTGTAGCAGTGAGGCT+AGG | 0.632784 | 1.1:+39649804 | MS.gene97681:CDS |
| GGTGGAAATTCTCAACAAAG+TGG | 0.639010 | 1.1:+39649513 | MS.gene97681:CDS |
| TGGAGAACAAGGCGAGTCCG+GGG | 0.639479 | 1.1:+39648995 | MS.gene97681:CDS |
| ATTTGTACGTGACAAAGAGA+TGG | 0.641223 | 1.1:+39648498 | MS.gene97681:CDS |
| AACGAGCACTTACGACCTTG+TGG | 0.643546 | 1.1:+39648270 | MS.gene97681:CDS |
| AGCATGCTATCAGCACCAGA+TGG | 0.646226 | 1.1:-39650503 | None:intergenic |
| TCCGGGGAAAGACGAAGTTG+TGG | 0.646466 | 1.1:+39649011 | MS.gene97681:CDS |
| CCAATTGGGATACTTGAAGT+CGG | 0.653375 | 1.1:+39649276 | MS.gene97681:CDS |
| ATCGCCCGGTGCATTCGCGG+TGG | 0.657134 | 1.1:+39649079 | MS.gene97681:CDS |
| TATGAGTAAATGGCTTGGTG+AGG | 0.658552 | 1.1:+39649956 | MS.gene97681:CDS |
| ATATTGCAACTCAAGGTGAG+AGG | 0.658618 | 1.1:+39650288 | MS.gene97681:CDS |
| GGAAGAATACAAACTGTGGT+TGG | 0.659627 | 1.1:+39650263 | MS.gene97681:CDS |
| GTTGGTGATATTGCAACTCA+AGG | 0.661902 | 1.1:+39650281 | MS.gene97681:CDS |
| TTCCCTAGTCTATACCATTG+CGG | 0.674872 | 1.1:-39648604 | None:intergenic |
| CCGCCTCGTTGTCCTCCATG+TGG | 0.680531 | 1.1:-39648220 | None:intergenic |
| GGCGCCAAAGGACTATCTGG+TGG | 0.683541 | 1.1:-39648583 | None:intergenic |
| TGGCCACATGGAGGACAACG+AGG | 0.696057 | 1.1:+39648217 | MS.gene97681:CDS |
| CCACATGGAGGACAACGAGG+CGG | 0.699639 | 1.1:+39648220 | MS.gene97681:CDS |
| CTATGAACATTGTAGCAGTG+AGG | 0.715518 | 1.1:+39649799 | MS.gene97681:CDS |
| GGTAGAACATCTGTTCCACA+AGG | 0.716804 | 1.1:-39648285 | None:intergenic |
| TGCTGGAAGAATACAAACTG+TGG | 0.747236 | 1.1:+39650259 | MS.gene97681:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAATGATGCAAAAAT+TGG | + | chr1.1:39649540-39649559 | MS.gene97681:CDS | 20.0% |
| !! | ACAGAAATAACAATCTTAAA+AGG | - | chr1.1:39650404-39650423 | None:intergenic | 20.0% |
| !! | AGTTTACAATATTAGATCAA+AGG | + | chr1.1:39648747-39648766 | MS.gene97681:CDS | 20.0% |
| !! | ATATGGATACAAAAATTTCA+TGG | + | chr1.1:39650132-39650151 | MS.gene97681:CDS | 20.0% |
| !! | TATGGATACAAAAATTTCAT+GGG | + | chr1.1:39650133-39650152 | MS.gene97681:CDS | 20.0% |
| !!! | AATTTTTGCATCATTAGTTT+TGG | - | chr1.1:39649541-39649560 | None:intergenic | 20.0% |
| ! | AACATGTAGAGAAAAATTGT+TGG | - | chr1.1:39650065-39650084 | None:intergenic | 25.0% |
| ! | AATGGAATGAACAATATACA+TGG | + | chr1.1:39649430-39649449 | MS.gene97681:CDS | 25.0% |
| ! | AGCAAAATATGGTATGAAAT+GGG | + | chr1.1:39649371-39649390 | MS.gene97681:CDS | 25.0% |
| ! | ATGAACTTAAATTCTCAAGT+AGG | + | chr1.1:39649151-39649170 | MS.gene97681:CDS | 25.0% |
| ! | ATGGAATGAACAATATACAT+GGG | + | chr1.1:39649431-39649450 | MS.gene97681:CDS | 25.0% |
| ! | GGTATCTTAAACTATCTAAT+TGG | - | chr1.1:39649776-39649795 | None:intergenic | 25.0% |
| ! | TAGCAAAATATGGTATGAAA+TGG | + | chr1.1:39649370-39649389 | MS.gene97681:CDS | 25.0% |
| ! | TGTATCACTTATATACATTG+TGG | - | chr1.1:39649226-39649245 | None:intergenic | 25.0% |
| ! | TTTATGTTAATCCGAAACTT+TGG | + | chr1.1:39648770-39648789 | MS.gene97681:CDS | 25.0% |
| !! | GAAATTTTTGTATCCATATG+TGG | - | chr1.1:39650131-39650150 | None:intergenic | 25.0% |
| !! | GTATATTGTTCATTCCATTT+TGG | - | chr1.1:39649429-39649448 | None:intergenic | 25.0% |
| !! | TCGTTTATCAACTTTAGAAA+TGG | + | chr1.1:39649575-39649594 | MS.gene97681:CDS | 25.0% |
| !!! | AATGCATTTTTGGAAGTAAA+GGG | - | chr1.1:39649731-39649750 | None:intergenic | 25.0% |
| !!! | AATTGTATCACTTTTTTCAG+GGG | + | chr1.1:39649926-39649945 | MS.gene97681:CDS | 25.0% |
| !!! | AGAATTGTATCACTTTTTTC+AGG | + | chr1.1:39649924-39649943 | MS.gene97681:CDS | 25.0% |
| !!! | GAATTGTATCACTTTTTTCA+GGG | + | chr1.1:39649925-39649944 | MS.gene97681:CDS | 25.0% |
| !!! | GTTTTTGACAATTGTCATTT+AGG | + | chr1.1:39649489-39649508 | MS.gene97681:CDS | 25.0% |
| !!! | TAATGCATTTTTGGAAGTAA+AGG | - | chr1.1:39649732-39649751 | None:intergenic | 25.0% |
| AAAGGAGAAGATACAATCAT+CGG | + | chr1.1:39648465-39648484 | MS.gene97681:CDS | 30.0% | |
| ACAAACAAAAATGTTGCTCT+TGG | - | chr1.1:39650341-39650360 | None:intergenic | 30.0% | |
| ACATGTTTCTCATTGGAATA+TGG | + | chr1.1:39650078-39650097 | MS.gene97681:CDS | 30.0% | |
| ACCCTTAAATACCAAAGTTT+CGG | - | chr1.1:39648784-39648803 | None:intergenic | 30.0% | |
| ACCTTCTGGATTGAAAAAAA+TGG | + | chr1.1:39649638-39649657 | MS.gene97681:CDS | 30.0% | |
| ATATCTATGAGTAAATGGCT+TGG | + | chr1.1:39649951-39649970 | MS.gene97681:CDS | 30.0% | |
| ATCCGAAACTTTGGTATTTA+AGG | + | chr1.1:39648779-39648798 | MS.gene97681:CDS | 30.0% | |
| CCTTCTGGATTGAAAAAAAT+GGG | + | chr1.1:39649639-39649658 | MS.gene97681:CDS | 30.0% | |
| GCACACATAATTTACCTTTA+TGG | + | chr1.1:39649702-39649721 | MS.gene97681:CDS | 30.0% | |
| GCTTATTGTGTAGCAAAATA+TGG | + | chr1.1:39649360-39649379 | MS.gene97681:CDS | 30.0% | |
| GGGTAATATCTATGAGTAAA+TGG | + | chr1.1:39649946-39649965 | MS.gene97681:CDS | 30.0% | |
| GTAGCTAGAGATGATTATAT+TGG | + | chr1.1:39648520-39648539 | MS.gene97681:CDS | 30.0% | |
| TATAGACTAGGGAATTTGAA+AGG | + | chr1.1:39648613-39648632 | MS.gene97681:CDS | 30.0% | |
| TCATTGGAATATGGAACTTT+AGG | + | chr1.1:39650087-39650106 | MS.gene97681:CDS | 30.0% | |
| TCCGAAACTTTGGTATTTAA+GGG | + | chr1.1:39648780-39648799 | MS.gene97681:CDS | 30.0% | |
| TGATAAGAATGAGGTATGAT+AGG | + | chr1.1:39650225-39650244 | MS.gene97681:CDS | 30.0% | |
| TGTAGAGAAAAATTGTTGGT+AGG | - | chr1.1:39650061-39650080 | None:intergenic | 30.0% | |
| TTGATGTGGATTCACATATA+TGG | + | chr1.1:39649871-39649890 | MS.gene97681:CDS | 30.0% | |
| TTTCTCTACATGTTTCTCAT+TGG | + | chr1.1:39650071-39650090 | MS.gene97681:CDS | 30.0% | |
| ! | ATTTTTGTATCCATATGTGG+AGG | - | chr1.1:39650128-39650147 | None:intergenic | 30.0% |
| ! | GTTTTTGTAAAAGCTCAAGT+TGG | + | chr1.1:39648859-39648878 | MS.gene97681:CDS | 30.0% |
| ! | TGAGCTTTTACAAAAACTTG+TGG | - | chr1.1:39648856-39648875 | None:intergenic | 30.0% |
| ! | TTTGACAATTGTCATTTAGG+TGG | + | chr1.1:39649492-39649511 | MS.gene97681:CDS | 30.0% |
| ! | TTTTTGTATCCATATGTGGA+GGG | - | chr1.1:39650127-39650146 | None:intergenic | 30.0% |
| !! | AACGTTGAAAGATTTGGTTT+TGG | + | chr1.1:39649105-39649124 | MS.gene97681:CDS | 30.0% |
| !! | AAGATTGTTATTTCTGTTGC+TGG | + | chr1.1:39650407-39650426 | MS.gene97681:CDS | 30.0% |
| !! | AGATTGTTATTTCTGTTGCT+GGG | + | chr1.1:39650408-39650427 | MS.gene97681:CDS | 30.0% |
| !! | CTGAGAGTTTTAATCCAAAA+TGG | + | chr1.1:39649412-39649431 | MS.gene97681:CDS | 30.0% |
| !! | TTACTTGTTCTAAAACCTTC+TGG | + | chr1.1:39649624-39649643 | MS.gene97681:CDS | 30.0% |
| !!! | GAAGGTTTTAGAACAAGTAA+TGG | - | chr1.1:39649624-39649643 | None:intergenic | 30.0% |
| AAAGGTGAAACAAGAACAAG+AGG | + | chr1.1:39648631-39648650 | MS.gene97681:CDS | 35.0% | |
| AACCTCTTGAAGAAATTGCT+TGG | - | chr1.1:39650482-39650501 | None:intergenic | 35.0% | |
| AGCTTGTAATCATCTGTGTT+TGG | - | chr1.1:39648166-39648185 | None:intergenic | 35.0% | |
| AGTTATGTTAGCTGTTTGGA+TGG | + | chr1.1:39648657-39648676 | MS.gene97681:CDS | 35.0% | |
| ATTTGTACGTGACAAAGAGA+TGG | + | chr1.1:39648498-39648517 | MS.gene97681:CDS | 35.0% | |
| CACAAGATGTGATAAGAATG+AGG | + | chr1.1:39650216-39650235 | MS.gene97681:CDS | 35.0% | |
| CCAACTTTCACTTCAACATA+AGG | - | chr1.1:39648373-39648392 | None:intergenic | 35.0% | |
| CCTTATGTTGAAGTGAAAGT+TGG | + | chr1.1:39648370-39648389 | MS.gene97681:CDS | 35.0% | |
| GTGAAGTTATGTTAGCTGTT+TGG | + | chr1.1:39648653-39648672 | MS.gene97681:CDS | 35.0% | |
| GTTATGTTAGCTGTTTGGAT+GGG | + | chr1.1:39648658-39648677 | MS.gene97681:CDS | 35.0% | |
| TCAACAACTTCTTTCCTAAG+AGG | - | chr1.1:39649843-39649862 | None:intergenic | 35.0% | |
| TCAGATTCAGCTTCAGTTAA+AGG | + | chr1.1:39648718-39648737 | MS.gene97681:CDS | 35.0% | |
| TGAACTAGTATTGTTGTCAC+TGG | - | chr1.1:39649999-39650018 | None:intergenic | 35.0% | |
| TGGTACAACGTTGAAAGATT+TGG | + | chr1.1:39649099-39649118 | MS.gene97681:CDS | 35.0% | |
| TGTTGAATACATGCTTGATG+TGG | + | chr1.1:39649857-39649876 | MS.gene97681:CDS | 35.0% | |
| TTACAAAAACTTGTGGTGGT+TGG | - | chr1.1:39648849-39648868 | None:intergenic | 35.0% | |
| ! | AACTCTTCATCTAGTTCATC+TGG | - | chr1.1:39650173-39650192 | None:intergenic | 35.0% |
| ! | AACTTTGGAAGCAACCAATT+GGG | + | chr1.1:39649262-39649281 | MS.gene97681:CDS | 35.0% |
| ! | ATTGTTGGTAGGATCAATTC+TGG | - | chr1.1:39650050-39650069 | None:intergenic | 35.0% |
| ! | GCTTTTACAAAAACTTGTGG+TGG | - | chr1.1:39648853-39648872 | None:intergenic | 35.0% |
| ! | GGATGCAAGTAATGCATTTT+TGG | - | chr1.1:39649741-39649760 | None:intergenic | 35.0% |
| ! | TAATCATCTGTGTTTGGCTT+TGG | - | chr1.1:39648160-39648179 | None:intergenic | 35.0% |
| ! | TCTAATTGGTTCACAGTGAA+TGG | - | chr1.1:39649762-39649781 | None:intergenic | 35.0% |
| ! | TGATACTTTTCCAACCTCTA+AGG | + | chr1.1:39650193-39650212 | MS.gene97681:CDS | 35.0% |
| ! | TTACCATTGCCTGTTTTCAT+TGG | - | chr1.1:39649327-39649346 | None:intergenic | 35.0% |
| !!! | CCCATTTTTTTCAATCCAGA+AGG | - | chr1.1:39649642-39649661 | None:intergenic | 35.0% |
| AAGAAATTGCTTGGCACAGA+AGG | - | chr1.1:39650473-39650492 | None:intergenic | 40.0% | |
| ACAACTTCTTTCCTAAGAGG+TGG | - | chr1.1:39649840-39649859 | None:intergenic | 40.0% | |
| ACAAGATCTTCGTTCCACAT+TGG | - | chr1.1:39648931-39648950 | None:intergenic | 40.0% | |
| AGAAGAAAACAAACCCCGAA+TGG | + | chr1.1:39648422-39648441 | MS.gene97681:CDS | 40.0% | |
| ATATTGCAACTCAAGGTGAG+AGG | + | chr1.1:39650288-39650307 | MS.gene97681:CDS | 40.0% | |
| CACCTTAGAGTTTGTCTTGA+AGG | + | chr1.1:39649177-39649196 | MS.gene97681:CDS | 40.0% | |
| CACCTTCAAGACAAACTCTA+AGG | - | chr1.1:39649182-39649201 | None:intergenic | 40.0% | |
| CCAAAAGTTATGACTGTGCA+AGG | - | chr1.1:39649468-39649487 | None:intergenic | 40.0% | |
| CCAATTGGGATACTTGAAGT+CGG | + | chr1.1:39649276-39649295 | MS.gene97681:CDS | 40.0% | |
| CGTTGAACAAATTCGAGACT+CGG | + | chr1.1:39649049-39649068 | MS.gene97681:CDS | 40.0% | |
| CTATGAACATTGTAGCAGTG+AGG | + | chr1.1:39649799-39649818 | MS.gene97681:CDS | 40.0% | |
| CTGCTACAATGTTCATAGCT+TGG | - | chr1.1:39649797-39649816 | None:intergenic | 40.0% | |
| GAATGAGGTATGATAGGCTT+AGG | + | chr1.1:39650231-39650250 | MS.gene97681:CDS | 40.0% | |
| GGAAGAATACAAACTGTGGT+TGG | + | chr1.1:39650263-39650282 | MS.gene97681:CDS | 40.0% | |
| GGACTTTCACCAATGAAAAC+AGG | + | chr1.1:39649315-39649334 | MS.gene97681:CDS | 40.0% | |
| GGTGGAAATTCTCAACAAAG+TGG | + | chr1.1:39649513-39649532 | MS.gene97681:CDS | 40.0% | |
| GTGAAAGTTGGCAACTACAA+AGG | + | chr1.1:39648382-39648401 | MS.gene97681:CDS | 40.0% | |
| TATCACATCTTGTGCCTTAG+AGG | - | chr1.1:39650210-39650229 | None:intergenic | 40.0% | |
| TCACCAATGAAAACAGGCAA+TGG | + | chr1.1:39649321-39649340 | MS.gene97681:CDS | 40.0% | |
| TCTTCGTTCCACATTGGATT+CGG | - | chr1.1:39648925-39648944 | None:intergenic | 40.0% | |
| TGCCAAGCAATTTCTTCAAG+AGG | + | chr1.1:39650477-39650496 | MS.gene97681:CDS | 40.0% | |
| TGCTGGAAGAATACAAACTG+TGG | + | chr1.1:39650259-39650278 | MS.gene97681:CDS | 40.0% | |
| TTCCAAAGTTGTCTAGCAGT+TGG | - | chr1.1:39649252-39649271 | None:intergenic | 40.0% | |
| TTCCCTAGTCTATACCATTG+CGG | - | chr1.1:39648607-39648626 | None:intergenic | 40.0% | |
| ! | CAACTTTGGAAGCAACCAAT+TGG | + | chr1.1:39649261-39649280 | MS.gene97681:CDS | 40.0% |
| ! | CCTTGCACAGTCATAACTTT+TGG | + | chr1.1:39649465-39649484 | MS.gene97681:CDS | 40.0% |
| ! | CGAGTCTCGAATTTGTTCAA+CGG | - | chr1.1:39649051-39649070 | None:intergenic | 40.0% |
| ! | GACAATTGTCATTTAGGTGG+TGG | + | chr1.1:39649495-39649514 | MS.gene97681:CDS | 40.0% |
| ! | TTTCTGTTGCTGGGATTTTC+TGG | + | chr1.1:39650417-39650436 | MS.gene97681:CDS | 40.0% |
| !! | GAAGTAAAGGGTGTCCATAA+AGG | - | chr1.1:39649719-39649738 | None:intergenic | 40.0% |
| !! | GTTGGTGATATTGCAACTCA+AGG | + | chr1.1:39650281-39650300 | MS.gene97681:CDS | 40.0% |
| !! | TATGAGTAAATGGCTTGGTG+AGG | + | chr1.1:39649956-39649975 | MS.gene97681:CDS | 40.0% |
| !! | TGGATTTGGTGGCAATTCTT+TGG | - | chr1.1:39648332-39648351 | None:intergenic | 40.0% |
| AAAGACACAAAGCCAGAGCT+AGG | + | chr1.1:39648187-39648206 | MS.gene97681:CDS | 45.0% | |
| AACATTGTAGCAGTGAGGCT+AGG | + | chr1.1:39649804-39649823 | MS.gene97681:CDS | 45.0% | |
| ACATCTTGTGCCTTAGAGGT+TGG | - | chr1.1:39650206-39650225 | None:intergenic | 45.0% | |
| AGCCAGAGCTAGGAGAAAAA+TGG | + | chr1.1:39648197-39648216 | MS.gene97681:CDS | 45.0% | |
| AGTTCCACCAGATAGTCCTT+TGG | + | chr1.1:39648579-39648598 | MS.gene97681:CDS | 45.0% | |
| CCGACTTCAAGTATCCCAAT+TGG | - | chr1.1:39649279-39649298 | None:intergenic | 45.0% | |
| CTAGGAGAAAAATGGCCACA+TGG | + | chr1.1:39648205-39648224 | MS.gene97681:CDS | 45.0% | |
| CTATCTGGTGGAACTCTTGT+TGG | - | chr1.1:39648574-39648593 | None:intergenic | 45.0% | |
| CTTCTGTCTTGTAACTGCTG+TGG | + | chr1.1:39650364-39650383 | MS.gene97681:CDS | 45.0% | |
| CTTTGACAACGCGAACATAG+AGG | - | chr1.1:39648309-39648328 | None:intergenic | 45.0% | |
| GAACAAATTCGAGACTCGGA+TGG | + | chr1.1:39649053-39649072 | MS.gene97681:CDS | 45.0% | |
| GACCAACTGCTAGACAACTT+TGG | + | chr1.1:39649247-39649266 | MS.gene97681:CDS | 45.0% | |
| GGCTTAGGCATCCAAAGTTT+AGG | + | chr1.1:39650438-39650457 | MS.gene97681:CDS | 45.0% | |
| GGCTTCAAGCTTTGCTTAGT+TGG | + | chr1.1:39650309-39650328 | MS.gene97681:CDS | 45.0% | |
| GGTAGAACATCTGTTCCACA+AGG | - | chr1.1:39648288-39648307 | None:intergenic | 45.0% | |
| GTCGGAATATTGAGTGCTCA+AGG | + | chr1.1:39649294-39649313 | MS.gene97681:CDS | 45.0% | |
| TCAGCTTCAGTTAAAGGCGA+AGG | + | chr1.1:39648724-39648743 | MS.gene97681:CDS | 45.0% | |
| TCTTTCGCTGTAAAGCCAAC+CGG | - | chr1.1:39648248-39648267 | None:intergenic | 45.0% | |
| TTCTTCAAGAGGTTGCCATC+TGG | + | chr1.1:39650488-39650507 | MS.gene97681:CDS | 45.0% | |
| ! | AGCACGAGGTTTTCTTCGAA+CGG | - | chr1.1:39648970-39648989 | None:intergenic | 45.0% |
| ! | CGAAAACTTGCTTCCATTCG+GGG | - | chr1.1:39648438-39648457 | None:intergenic | 45.0% |
| ! | CGCGAAAACTTGCTTCCATT+CGG | - | chr1.1:39648440-39648459 | None:intergenic | 45.0% |
| ! | CTCGAATTTGTTCAACGGCA+AGG | - | chr1.1:39649046-39649065 | None:intergenic | 45.0% |
| ! | GCAAGTTTTCGCGTTCTCAA+AGG | + | chr1.1:39648447-39648466 | MS.gene97681:CDS | 45.0% |
| ! | GCGAAAACTTGCTTCCATTC+GGG | - | chr1.1:39648439-39648458 | None:intergenic | 45.0% |
| ! | GGCAACTTGCTCCTAAACTT+TGG | - | chr1.1:39650452-39650471 | None:intergenic | 45.0% |
| !! | ATTGGATTCGGCGTTTTGGT+CGG | - | chr1.1:39648913-39648932 | None:intergenic | 45.0% |
| !!! | GGTGGTTGGCTTTTATCATG+TGG | - | chr1.1:39648835-39648854 | None:intergenic | 45.0% |
| !!! | TTGCTGGGATTTTCTGGCTT+AGG | + | chr1.1:39650423-39650442 | MS.gene97681:CDS | 45.0% |
| !!! | TTTGGTTTTGGCGTTCTCGA+AGG | + | chr1.1:39649117-39649136 | MS.gene97681:CDS | 45.0% |
| AACGAGCACTTACGACCTTG+TGG | + | chr1.1:39648270-39648289 | MS.gene97681:CDS | 50.0% | |
| ACCTAGACACCCTCCACATA+TGG | + | chr1.1:39650115-39650134 | MS.gene97681:CDS | 50.0% | |
| ACGCTTCCTGTGACTGGATT+TGG | - | chr1.1:39648346-39648365 | None:intergenic | 50.0% | |
| AGCATGCTATCAGCACCAGA+TGG | - | chr1.1:39650506-39650525 | None:intergenic | 50.0% | |
| CCAAAACGCCGAATCCAATG+TGG | + | chr1.1:39648914-39648933 | MS.gene97681:CDS | 50.0% | |
| CGCCGCAATGGTATAGACTA+GGG | + | chr1.1:39648602-39648621 | MS.gene97681:CDS | 50.0% | |
| CTTCCTGTGACTGGATTTGG+TGG | - | chr1.1:39648343-39648362 | None:intergenic | 50.0% | |
| GAAGAGCAGAACCACCTCTT+AGG | + | chr1.1:39649826-39649845 | MS.gene97681:CDS | 50.0% | |
| GAATCTGAATGCCATGCCTC+AGG | - | chr1.1:39648706-39648725 | None:intergenic | 50.0% | |
| GGAGAAAAATGGCCACATGG+AGG | + | chr1.1:39648208-39648227 | MS.gene97681:CDS | 50.0% | |
| GGCGTTCTCGAAGGTGATAA+AGG | + | chr1.1:39649126-39649145 | MS.gene97681:CDS | 50.0% | |
| TTGCCACCAAATCCAGTCAC+AGG | + | chr1.1:39648337-39648356 | MS.gene97681:CDS | 50.0% | |
| ! | AGAAAACCTCGTGCTGACGT+TGG | + | chr1.1:39648975-39648994 | MS.gene97681:CDS | 50.0% |
| ! | AGCTGATGAAGCGTTTCCTG+AGG | + | chr1.1:39648687-39648706 | MS.gene97681:CDS | 50.0% |
| ! | ATGAAGCGTTTCCTGAGGCA+TGG | + | chr1.1:39648692-39648711 | MS.gene97681:CDS | 50.0% |
| ! | CCACATTGGATTCGGCGTTT+TGG | - | chr1.1:39648917-39648936 | None:intergenic | 50.0% |
| !! | GATAGGCTTAGGAGTGTTGC+TGG | + | chr1.1:39650242-39650261 | MS.gene97681:CDS | 50.0% |
| !! | GGCTTGGTGAGGTACAAAAG+TGG | + | chr1.1:39649967-39649986 | MS.gene97681:CDS | 50.0% |
| !! | TCCATATGTGGAGGGTGTCT+AGG | - | chr1.1:39650119-39650138 | None:intergenic | 50.0% |
| !!! | GGCCATTTTTCTCCTAGCTC+TGG | - | chr1.1:39648202-39648221 | None:intergenic | 50.0% |
| ATAGTCCTTTGGCGCCGCAA+TGG | + | chr1.1:39648590-39648609 | MS.gene97681:CDS | 55.0% | |
| CTATACCATTGCGGCGCCAA+AGG | - | chr1.1:39648598-39648617 | None:intergenic | 55.0% | |
| GCCACAACTTCGTCTTTCCC+CGG | - | chr1.1:39649015-39649034 | None:intergenic | 55.0% | |
| GCGCCGCAATGGTATAGACT+AGG | + | chr1.1:39648601-39648620 | MS.gene97681:CDS | 55.0% | |
| GGATCTACGCTTCCTGTGAC+TGG | - | chr1.1:39648352-39648371 | None:intergenic | 55.0% | |
| GTTGGAGAACAAGGCGAGTC+CGG | + | chr1.1:39648993-39649012 | MS.gene97681:CDS | 55.0% | |
| TCCGGGGAAAGACGAAGTTG+TGG | + | chr1.1:39649011-39649030 | MS.gene97681:CDS | 55.0% | |
| TGTTCTCCAACGTCAGCACG+AGG | - | chr1.1:39648984-39649003 | None:intergenic | 55.0% | |
| TTGGAGAACAAGGCGAGTCC+GGG | + | chr1.1:39648994-39649013 | MS.gene97681:CDS | 55.0% | |
| TTGTACCACCGCGAATGCAC+CGG | - | chr1.1:39649087-39649106 | None:intergenic | 55.0% | |
| ! | CGTGCTGACGTTGGAGAACA+AGG | + | chr1.1:39648984-39649003 | MS.gene97681:CDS | 55.0% |
| !! | GTGTTTGGCTTTGGAGCTGC+AGG | - | chr1.1:39648151-39648170 | None:intergenic | 55.0% |
| ATCATCGCCCGGTGCATTCG+CGG | + | chr1.1:39649076-39649095 | MS.gene97681:CDS | 60.0% | |
| CCACATGGAGGACAACGAGG+CGG | + | chr1.1:39648220-39648239 | MS.gene97681:CDS | 60.0% | |
| GACTCGGATGGATCATCGCC+CGG | + | chr1.1:39649065-39649084 | MS.gene97681:CDS | 60.0% | |
| GGCGCCAAAGGACTATCTGG+TGG | - | chr1.1:39648586-39648605 | None:intergenic | 60.0% | |
| TGCGGCGCCAAAGGACTATC+TGG | - | chr1.1:39648589-39648608 | None:intergenic | 60.0% | |
| TGGAGAACAAGGCGAGTCCG+GGG | + | chr1.1:39648995-39649014 | MS.gene97681:CDS | 60.0% | |
| TGGCCACATGGAGGACAACG+AGG | + | chr1.1:39648217-39648236 | MS.gene97681:CDS | 60.0% | |
| TGTACCACCGCGAATGCACC+GGG | - | chr1.1:39649086-39649105 | None:intergenic | 60.0% | |
| CCGCCTCGTTGTCCTCCATG+TGG | - | chr1.1:39648223-39648242 | None:intergenic | 65.0% | |
| GACAACGAGGCGGAACCGGT+TGG | + | chr1.1:39648230-39648249 | MS.gene97681:CDS | 65.0% | |
| GGAGGACAACGAGGCGGAAC+CGG | + | chr1.1:39648226-39648245 | MS.gene97681:CDS | 65.0% | |
| ATCGCCCGGTGCATTCGCGG+TGG | + | chr1.1:39649079-39649098 | MS.gene97681:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 39648133 | 39650529 | 39648133 | ID=MS.gene97681 |
| chr1.1 | mRNA | 39648133 | 39650529 | 39648133 | ID=MS.gene97681.t1;Parent=MS.gene97681 |
| chr1.1 | exon | 39648133 | 39650529 | 39648133 | ID=MS.gene97681.t1.exon1;Parent=MS.gene97681.t1 |
| chr1.1 | CDS | 39648133 | 39650529 | 39648133 | ID=cds.MS.gene97681.t1;Parent=MS.gene97681.t1 |
| Gene Sequence |
| Protein sequence |
