Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84949.t1 | XP_013442140.1 | 99.4 | 798 | 4 | 1 | 1 | 798 | 1 | 797 | 0.00E+00 | 1619 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84949.t1 | Q9FL59 | 81.1 | 785 | 147 | 1 | 14 | 798 | 11 | 794 | 0.0e+00 | 1351.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84949.t1 | A0A072TRG9 | 99.4 | 798 | 4 | 1 | 1 | 798 | 1 | 797 | 0.0e+00 | 1619.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056972 | MS.gene84949 | PPI |
| MS.gene84949 | MS.gene84943 | PPI |
| MS.gene84949 | MS.gene04595 | PPI |
| MS.gene84949 | MS.gene57362 | PPI |
| MS.gene84949 | MS.gene018791 | PPI |
| MS.gene97685 | MS.gene84949 | PPI |
| MS.gene84949 | MS.gene072379 | PPI |
| MS.gene84949 | MS.gene003921 | PPI |
| MS.gene056344 | MS.gene84949 | PPI |
| MS.gene84949 | MS.gene90010 | PPI |
| MS.gene84949 | MS.gene017959 | PPI |
| MS.gene84949 | MS.gene54603 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84949.t1 | MTR_0291s0010 | 99.373 | 798 | 4 | 1 | 1 | 798 | 1 | 797 | 0.0 | 1644 |
| MS.gene84949.t1 | MTR_3g027150 | 71.950 | 795 | 216 | 3 | 11 | 798 | 28 | 822 | 0.0 | 1247 |
| MS.gene84949.t1 | MTR_4g023460 | 71.824 | 795 | 220 | 3 | 6 | 798 | 350 | 1142 | 0.0 | 1240 |
| MS.gene84949.t1 | MTR_7g092770 | 67.468 | 790 | 239 | 6 | 10 | 798 | 3 | 775 | 0.0 | 1149 |
| MS.gene84949.t1 | MTR_0305s0020 | 67.215 | 790 | 240 | 8 | 10 | 798 | 3 | 774 | 0.0 | 1120 |
| MS.gene84949.t1 | MTR_4g066150 | 65.355 | 788 | 251 | 6 | 11 | 798 | 5 | 770 | 0.0 | 1080 |
| MS.gene84949.t1 | MTR_5g010390 | 62.389 | 787 | 279 | 6 | 15 | 798 | 235 | 1007 | 0.0 | 1059 |
| MS.gene84949.t1 | MTR_4g033215 | 59.671 | 791 | 301 | 5 | 9 | 798 | 271 | 1044 | 0.0 | 992 |
| MS.gene84949.t1 | MTR_8g031270 | 57.034 | 789 | 316 | 8 | 15 | 798 | 233 | 1003 | 0.0 | 955 |
| MS.gene84949.t1 | MTR_7g076900 | 56.426 | 817 | 316 | 10 | 4 | 798 | 215 | 1013 | 0.0 | 939 |
| MS.gene84949.t1 | MTR_4g057675 | 51.010 | 792 | 358 | 10 | 14 | 798 | 15 | 783 | 0.0 | 776 |
| MS.gene84949.t1 | MTR_4g107850 | 50.914 | 766 | 329 | 15 | 50 | 798 | 303 | 1038 | 0.0 | 757 |
| MS.gene84949.t1 | MTR_6g027540 | 49.153 | 767 | 341 | 14 | 50 | 798 | 274 | 1009 | 0.0 | 743 |
| MS.gene84949.t1 | MTR_4g071870 | 48.990 | 792 | 340 | 12 | 14 | 798 | 15 | 749 | 0.0 | 738 |
| MS.gene84949.t1 | MTR_6g028050 | 47.513 | 764 | 367 | 12 | 48 | 798 | 284 | 1026 | 0.0 | 718 |
| MS.gene84949.t1 | MTR_1g015540 | 43.550 | 783 | 407 | 13 | 26 | 792 | 4 | 767 | 0.0 | 635 |
| MS.gene84949.t1 | MTR_5g096980 | 40.445 | 764 | 420 | 15 | 47 | 798 | 23 | 763 | 0.0 | 561 |
| MS.gene84949.t1 | MTR_4g023250 | 65.385 | 130 | 43 | 1 | 668 | 797 | 1 | 128 | 9.04e-53 | 179 |
| MS.gene84949.t1 | MTR_4g023230 | 46.721 | 122 | 50 | 1 | 585 | 706 | 49 | 155 | 1.96e-31 | 120 |
| MS.gene84949.t1 | MTR_4g023390 | 47.115 | 104 | 33 | 1 | 671 | 774 | 16 | 97 | 2.01e-26 | 104 |
| MS.gene84949.t1 | MTR_4g023240 | 73.333 | 60 | 16 | 0 | 519 | 578 | 10 | 69 | 2.93e-23 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84949.t1 | AT5G06850 | 80.940 | 787 | 149 | 1 | 12 | 798 | 9 | 794 | 0.0 | 1374 |
| MS.gene84949.t1 | AT5G48060 | 71.429 | 791 | 211 | 6 | 12 | 798 | 257 | 1036 | 0.0 | 1207 |
| MS.gene84949.t1 | AT3G57880 | 67.342 | 790 | 238 | 9 | 10 | 798 | 3 | 773 | 0.0 | 1127 |
| MS.gene84949.t1 | AT3G57880 | 67.342 | 790 | 238 | 9 | 10 | 798 | 3 | 773 | 0.0 | 1127 |
| MS.gene84949.t1 | AT3G57880 | 67.342 | 790 | 238 | 9 | 10 | 798 | 3 | 773 | 0.0 | 1127 |
| MS.gene84949.t1 | AT3G57880 | 67.342 | 790 | 238 | 9 | 10 | 798 | 3 | 773 | 0.0 | 1127 |
| MS.gene84949.t1 | AT5G12970 | 65.570 | 790 | 248 | 7 | 10 | 798 | 3 | 769 | 0.0 | 1100 |
| MS.gene84949.t1 | AT1G51570 | 64.981 | 791 | 258 | 8 | 10 | 798 | 3 | 776 | 0.0 | 1098 |
| MS.gene84949.t1 | AT4G11610 | 61.845 | 802 | 279 | 8 | 1 | 798 | 233 | 1011 | 0.0 | 1053 |
| MS.gene84949.t1 | AT4G11610 | 61.845 | 802 | 279 | 8 | 1 | 798 | 229 | 1007 | 0.0 | 1052 |
| MS.gene84949.t1 | AT4G11610 | 61.845 | 802 | 279 | 8 | 1 | 798 | 96 | 874 | 0.0 | 1051 |
| MS.gene84949.t1 | AT1G22610 | 58.407 | 791 | 317 | 4 | 9 | 798 | 250 | 1029 | 0.0 | 993 |
| MS.gene84949.t1 | AT4G00700 | 56.767 | 761 | 317 | 7 | 43 | 798 | 253 | 1006 | 0.0 | 908 |
| MS.gene84949.t1 | AT4G00700 | 56.767 | 761 | 317 | 7 | 43 | 798 | 253 | 1006 | 0.0 | 908 |
| MS.gene84949.t1 | AT1G04150 | 54.064 | 812 | 325 | 14 | 5 | 798 | 231 | 1012 | 0.0 | 876 |
| MS.gene84949.t1 | AT3G61300 | 53.141 | 796 | 327 | 16 | 10 | 798 | 216 | 972 | 0.0 | 872 |
| MS.gene84949.t1 | AT4G20080 | 53.887 | 759 | 329 | 9 | 44 | 798 | 33 | 774 | 0.0 | 858 |
| MS.gene84949.t1 | AT1G74720 | 50.127 | 786 | 351 | 13 | 36 | 798 | 314 | 1081 | 0.0 | 764 |
| MS.gene84949.t1 | AT3G03680 | 49.483 | 774 | 336 | 15 | 50 | 798 | 274 | 1017 | 0.0 | 752 |
| MS.gene84949.t1 | AT5G17980 | 47.507 | 762 | 363 | 14 | 48 | 798 | 314 | 1049 | 0.0 | 717 |
| MS.gene84949.t1 | AT3G61720 | 37.272 | 821 | 452 | 19 | 12 | 798 | 4 | 795 | 1.74e-165 | 499 |
| MS.gene84949.t1 | AT5G03435 | 37.657 | 794 | 427 | 24 | 12 | 793 | 4 | 741 | 5.33e-157 | 475 |
| MS.gene84949.t1 | AT5G03435 | 40.304 | 593 | 308 | 16 | 12 | 598 | 4 | 556 | 5.83e-129 | 396 |
| MS.gene84949.t1 | AT5G44760 | 44.068 | 413 | 172 | 12 | 15 | 421 | 5 | 364 | 1.80e-100 | 319 |
| MS.gene84949.t1 | AT5G44760 | 35.766 | 137 | 39 | 1 | 564 | 700 | 364 | 451 | 2.19e-17 | 86.3 |
| MS.gene84949.t1 | AT1G03370 | 31.707 | 123 | 80 | 3 | 59 | 180 | 3 | 122 | 4.02e-11 | 67.4 |
| MS.gene84949.t1 | AT1G03370 | 31.707 | 123 | 80 | 3 | 59 | 180 | 3 | 122 | 5.90e-11 | 67.0 |
Find 149 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCGAAACTTTGGTATTTA+AGG | 0.059181 | 1.3:+37003374 | MS.gene84949:CDS |
| GCACACATAATTTACCTTTA+TGG | 0.094538 | 1.3:+37004297 | MS.gene84949:CDS |
| TCAGATTCAGCTTCAGTTAA+AGG | 0.151763 | 1.3:+37003313 | MS.gene84949:CDS |
| ACATGTTTCTCATTGGAATA+TGG | 0.237452 | 1.3:+37004673 | MS.gene84949:CDS |
| GTGTATTGTTCATTCCATTT+TGG | 0.239153 | 1.3:-37004021 | None:intergenic |
| AAGATTGTTATTTCTGTTGC+TGG | 0.245800 | 1.3:+37005002 | MS.gene84949:CDS |
| TTACTTGTTCTAAAACCTTC+TGG | 0.249201 | 1.3:+37004219 | MS.gene84949:CDS |
| GGTATCTTAAACTATCTAAT+TGG | 0.260719 | 1.3:-37004368 | None:intergenic |
| TGGATTTGGTGGCAATTCTT+TGG | 0.274389 | 1.3:-37002924 | None:intergenic |
| TATCACATCTTGTGCCTTAG+AGG | 0.279796 | 1.3:-37004802 | None:intergenic |
| CACCTTAGAGTTTGTCTTGA+AGG | 0.286543 | 1.3:+37003772 | MS.gene84949:CDS |
| ATTGTTGGTAGGATCAATTC+TGG | 0.294073 | 1.3:-37004642 | None:intergenic |
| AGTTTACAATATTAGATCTA+AGG | 0.297392 | 1.3:+37003342 | MS.gene84949:CDS |
| TCCGAAACTTTGGTATTTAA+GGG | 0.315843 | 1.3:+37003375 | MS.gene84949:CDS |
| TAATCATCTGTGTTTGGCTT+TGG | 0.316111 | 1.3:-37002752 | None:intergenic |
| CCTTGCACAGTCATAACTTT+TGG | 0.316380 | 1.3:+37004060 | MS.gene84949:CDS |
| GGCTTCAAGCTTTGCTTAGT+TGG | 0.317783 | 1.3:+37004904 | MS.gene84949:CDS |
| GCGAAAACTTGCTTCCATTC+GGG | 0.324098 | 1.3:-37003031 | None:intergenic |
| ACCCTTAAATACCAAAGTTT+CGG | 0.329185 | 1.3:-37003376 | None:intergenic |
| ACAGAAATAACAATCTTAAA+AGG | 0.330313 | 1.3:-37004996 | None:intergenic |
| CCACATTGGATTCGGCGTTT+TGG | 0.333074 | 1.3:-37003509 | None:intergenic |
| GGGTAATATCTATGAGTAAA+TGG | 0.335854 | 1.3:+37004541 | MS.gene84949:CDS |
| AGCTTGTAATCATCTGTGTT+TGG | 0.339723 | 1.3:-37002758 | None:intergenic |
| ACGCTTCCTGTGACTGGATT+TGG | 0.340820 | 1.3:-37002938 | None:intergenic |
| GCTTATTGTGTAGCAAAATA+TGG | 0.350897 | 1.3:+37003955 | MS.gene84949:CDS |
| GAAGAGCAGAACCACCTCTT+AGG | 0.360465 | 1.3:+37004421 | MS.gene84949:CDS |
| AACTCTTCATCTAGTTCATC+TGG | 0.366933 | 1.3:-37004765 | None:intergenic |
| GGCTTAGGCATCCAAAGTTT+AGG | 0.369172 | 1.3:+37005033 | MS.gene84949:CDS |
| TCGTTTATCAACTTTAGAAA+TGG | 0.370382 | 1.3:+37004170 | MS.gene84949:CDS |
| GTTGGAGAACAAGGCGAGTC+CGG | 0.373824 | 1.3:+37003588 | MS.gene84949:CDS |
| CCAACTTTCACTTCAACATA+AGG | 0.378608 | 1.3:-37002965 | None:intergenic |
| TTTCTCTACATGTTTCTCAT+TGG | 0.383690 | 1.3:+37004666 | MS.gene84949:CDS |
| GTGTTTGGCTTTGGAGCTGC+AGG | 0.385575 | 1.3:-37002743 | None:intergenic |
| TGGTACAACGTTGAAAGATT+TGG | 0.387221 | 1.3:+37003694 | MS.gene84949:CDS |
| TGCGAAAACTTGCTTCCATT+CGG | 0.387869 | 1.3:-37003032 | None:intergenic |
| TGCGGCGCCAAAGGACTATC+TGG | 0.389015 | 1.3:-37003181 | None:intergenic |
| CTATCTGGTGGAACTCTTGT+TGG | 0.399768 | 1.3:-37003166 | None:intergenic |
| CACCTTCAAGACAAACTCTA+AGG | 0.399784 | 1.3:-37003774 | None:intergenic |
| GTAGCTAGAGATGATTATAT+TGG | 0.404183 | 1.3:+37003115 | MS.gene84949:CDS |
| CAACTTTGGAAGCAACCAAT+TGG | 0.407270 | 1.3:+37003856 | MS.gene84949:CDS |
| GATAGGCTTAGGAGTGTTGC+TGG | 0.407272 | 1.3:+37004837 | MS.gene84949:CDS |
| TAGCAAAATATGGTATGAAA+TGG | 0.410325 | 1.3:+37003965 | MS.gene84949:CDS |
| GGAGGACAACGAGGCGGAAC+CGG | 0.416161 | 1.3:+37002821 | MS.gene84949:CDS |
| TCTTCGTTCCACATTGGATT+CGG | 0.417173 | 1.3:-37003517 | None:intergenic |
| GGCGTTCTCGAAGGTGATAA+AGG | 0.419999 | 1.3:+37003721 | MS.gene84949:CDS |
| GGCAACTTGCTCCTAAACTT+TGG | 0.423193 | 1.3:-37005044 | None:intergenic |
| GTGAAGTTATGTTAGCTGTT+TGG | 0.423606 | 1.3:+37003248 | MS.gene84949:CDS |
| TCTAATTGGTTCACAGTGAA+TGG | 0.425729 | 1.3:-37004354 | None:intergenic |
| ACCAAGACACCCTCCACATA+TGG | 0.428256 | 1.3:+37004710 | MS.gene84949:CDS |
| TGATAAGAATGAGGTATGAT+AGG | 0.433867 | 1.3:+37004820 | MS.gene84949:CDS |
| TTGATGTGGATTCACATATA+TGG | 0.435933 | 1.3:+37004466 | MS.gene84949:CDS |
| GGATCTACGCTTCCTGTGAC+TGG | 0.438103 | 1.3:-37002944 | None:intergenic |
| AAGAAATTGCTTGGCACAGA+AGG | 0.441455 | 1.3:-37005065 | None:intergenic |
| AGCAAAATATGGTATGAAAT+GGG | 0.446499 | 1.3:+37003966 | MS.gene84949:CDS |
| AGATTGTTATTTCTGTTGCT+GGG | 0.455606 | 1.3:+37005003 | MS.gene84949:CDS |
| TTTATGTTAATCCGAAACTT+TGG | 0.456350 | 1.3:+37003365 | MS.gene84949:CDS |
| CCAACTTCAAGTATCCCAAT+TGG | 0.457472 | 1.3:-37003871 | None:intergenic |
| TTGGAGAACAAGGCGAGTCC+GGG | 0.462296 | 1.3:+37003589 | MS.gene84949:CDS |
| TCCATATGTGGAGGGTGTCT+TGG | 0.467356 | 1.3:-37004711 | None:intergenic |
| GAAGTAAAGGGTGTCCATAA+AGG | 0.467642 | 1.3:-37004311 | None:intergenic |
| GCCACAACTTCGTCTTTCCC+CGG | 0.471487 | 1.3:-37003607 | None:intergenic |
| TTGTACCACCGCGAATGCAC+CGG | 0.472389 | 1.3:-37003679 | None:intergenic |
| TTCTTCAAGAGGTTGCCATC+TGG | 0.472554 | 1.3:+37005083 | MS.gene84949:CDS |
| GACAATTGTCATTTAGGTGG+TGG | 0.473245 | 1.3:+37004090 | MS.gene84949:CDS |
| GAATGAGGTATGATAGGCTT+AGG | 0.474201 | 1.3:+37004826 | MS.gene84949:CDS |
| ATCATCGCCCGGTGCATTCG+CGG | 0.476775 | 1.3:+37003671 | MS.gene84949:CDS |
| ACATCTTGTGCCTTAGAGGT+TGG | 0.479165 | 1.3:-37004798 | None:intergenic |
| GGACTTTCACCAATGAAAAC+AGG | 0.481943 | 1.3:+37003910 | MS.gene84949:CDS |
| AACTTTGGAAGCAACCAATT+GGG | 0.484378 | 1.3:+37003857 | MS.gene84949:CDS |
| TTCCAAAGTTGTCTAGCAGT+TGG | 0.485379 | 1.3:-37003844 | None:intergenic |
| TCTTTCGCTGTAAAGCCAAC+CGG | 0.488325 | 1.3:-37002840 | None:intergenic |
| AGTTCCACCAGATAGTCCTT+TGG | 0.489398 | 1.3:+37003174 | MS.gene84949:CDS |
| ATGAACTTAAATTCTCAAGT+AGG | 0.491390 | 1.3:+37003746 | MS.gene84949:CDS |
| TGAACTAGTATTGTTGTCAC+TGG | 0.493829 | 1.3:-37004591 | None:intergenic |
| GAATCTGAATGCCATGCCTC+AGG | 0.494847 | 1.3:-37003298 | None:intergenic |
| CCTTATGTTGAAGTGAAAGT+TGG | 0.496099 | 1.3:+37002965 | MS.gene84949:CDS |
| AACCTCTTGAAGAAATTGCT+TGG | 0.498226 | 1.3:-37005074 | None:intergenic |
| GACCAACTGCTAGACAACTT+TGG | 0.501805 | 1.3:+37003842 | MS.gene84949:CDS |
| TCAACAACTTCTTTCCTAAG+AGG | 0.501997 | 1.3:-37004435 | None:intergenic |
| CCAATTGGGATACTTGAAGT+TGG | 0.502644 | 1.3:+37003871 | MS.gene84949:CDS |
| CTGCTACAATGTTCATAGCT+TGG | 0.502811 | 1.3:-37004389 | None:intergenic |
| TGCCAAGCAATTTCTTCAAG+AGG | 0.504743 | 1.3:+37005072 | MS.gene84949:CDS |
| CGAAAACTTGCTTCCATTCG+GGG | 0.512084 | 1.3:-37003030 | None:intergenic |
| CTCGAATTTGTTCAACGGCA+AGG | 0.512907 | 1.3:-37003638 | None:intergenic |
| AACGTTGAAAGATTTGGTTT+CGG | 0.525078 | 1.3:+37003700 | MS.gene84949:CDS |
| TGTACCACCGCGAATGCACC+GGG | 0.530409 | 1.3:-37003678 | None:intergenic |
| AAAGACACAAAGCCAGAGCT+AGG | 0.537262 | 1.3:+37002782 | MS.gene84949:CDS |
| CGTTGAACAAATTCGAGACT+CGG | 0.538730 | 1.3:+37003644 | MS.gene84949:CDS |
| CTATACCATTGCGGCGCCAA+AGG | 0.540068 | 1.3:-37003190 | None:intergenic |
| CGTGCTGACGTTGGAGAACA+AGG | 0.541103 | 1.3:+37003579 | MS.gene84949:CDS |
| AGAAAACCTCGTGCTGACGT+TGG | 0.541212 | 1.3:+37003570 | MS.gene84949:CDS |
| TCAGCTTCAGTTAAAGGTGA+AGG | 0.543385 | 1.3:+37003319 | MS.gene84949:CDS |
| TGTATCACTTATATACATTG+TGG | 0.546946 | 1.3:-37003818 | None:intergenic |
| GCGCCGCAATGGTATAGACT+AGG | 0.547237 | 1.3:+37003196 | MS.gene84949:CDS |
| CGCCGCAATGGTATAGACTA+GGG | 0.547437 | 1.3:+37003197 | MS.gene84949:CDS |
| TTTGGTTTCGGCGTTCTCGA+AGG | 0.548524 | 1.3:+37003712 | MS.gene84949:CDS |
| TGAAGTATTTGTACGAGACA+AGG | 0.555821 | 1.3:+37003087 | MS.gene84949:CDS |
| ACAAGATCTTCGTTCCACAT+TGG | 0.557915 | 1.3:-37003523 | None:intergenic |
| AGAAGAAAACAAACCCCGAA+TGG | 0.558086 | 1.3:+37003017 | MS.gene84949:CDS |
| CTTCCTGTGACTGGATTTGG+TGG | 0.560390 | 1.3:-37002935 | None:intergenic |
| AGTTATGTTAGCTGTTTGGA+TGG | 0.565033 | 1.3:+37003252 | MS.gene84949:CDS |
| ATAGTCCTTTGGCGCCGCAA+TGG | 0.565983 | 1.3:+37003185 | MS.gene84949:CDS |
| TTTGACAATTGTCATTTAGG+TGG | 0.567553 | 1.3:+37004087 | MS.gene84949:CDS |
| GACTCGGATGGATCATCGCC+CGG | 0.570812 | 1.3:+37003660 | MS.gene84949:CDS |
| ACAACTTCTTTCCTAAGAGG+TGG | 0.571006 | 1.3:-37004432 | None:intergenic |
| CCAAAAGTTATGACTGTGCA+AGG | 0.572940 | 1.3:-37004060 | None:intergenic |
| TTGCCACCAAATCCAGTCAC+AGG | 0.577826 | 1.3:+37002932 | MS.gene84949:CDS |
| CACAAGATGTGATAAGAATG+AGG | 0.578190 | 1.3:+37004811 | MS.gene84949:CDS |
| ATATCTATGAGTAAATGGCT+TGG | 0.584041 | 1.3:+37004546 | MS.gene84949:CDS |
| GTGAAAGTTGGCAACTACAA+AGG | 0.587577 | 1.3:+37002977 | MS.gene84949:CDS |
| GAACAAATTCGAGACTCGGA+TGG | 0.591471 | 1.3:+37003648 | MS.gene84949:CDS |
| CTTCTGTCTTGTAACTGCTG+TGG | 0.594601 | 1.3:+37004959 | MS.gene84949:CDS |
| CTTTGACAACGCGAACATAG+AGG | 0.595677 | 1.3:-37002901 | None:intergenic |
| AAAGGTGAAACAAGAACAAG+AGG | 0.601357 | 1.3:+37003226 | MS.gene84949:CDS |
| ATGAAGCGTTTCCTGAGGCA+TGG | 0.601952 | 1.3:+37003287 | MS.gene84949:CDS |
| TGTTGAATACATGCTTGATG+TGG | 0.606283 | 1.3:+37004452 | MS.gene84949:CDS |
| GTTATGTTAGCTGTTTGGAT+GGG | 0.606349 | 1.3:+37003253 | MS.gene84949:CDS |
| TATAGACTAGGGAATTTGAA+AGG | 0.609327 | 1.3:+37003208 | MS.gene84949:CDS |
| CCAAAACGCCGAATCCAATG+TGG | 0.614361 | 1.3:+37003509 | MS.gene84949:CDS |
| AAAGGAGAAGATACAATCAT+CGG | 0.615131 | 1.3:+37003060 | MS.gene84949:CDS |
| TGTTCTCCAACGTCAGCACG+AGG | 0.616133 | 1.3:-37003576 | None:intergenic |
| TCACCAATGAAAACAGGCAA+TGG | 0.618152 | 1.3:+37003916 | MS.gene84949:CDS |
| CGAGTCTCGAATTTGTTCAA+CGG | 0.618223 | 1.3:-37003643 | None:intergenic |
| GGCTTGGTGAGGTACAAAAG+TGG | 0.626019 | 1.3:+37004562 | MS.gene84949:CDS |
| GACAACGAGGCGGAACCGGT+TGG | 0.626600 | 1.3:+37002825 | MS.gene84949:CDS |
| AGCTGATGAAGCGTTTCCTG+AGG | 0.631444 | 1.3:+37003282 | MS.gene84949:CDS |
| AACATTGTAGCAGTGAGGCT+AGG | 0.632784 | 1.3:+37004399 | MS.gene84949:CDS |
| GGTGGAAATTCTCAACAAAG+TGG | 0.639010 | 1.3:+37004108 | MS.gene84949:CDS |
| TGGAGAACAAGGCGAGTCCG+GGG | 0.639479 | 1.3:+37003590 | MS.gene84949:CDS |
| AGCATGCTATCAGCACCAGA+TGG | 0.646226 | 1.3:-37005098 | None:intergenic |
| TCCGGGGAAAGACGAAGTTG+TGG | 0.646466 | 1.3:+37003606 | MS.gene84949:CDS |
| ATATTGCAACACAAGGTGAG+AGG | 0.647800 | 1.3:+37004883 | MS.gene84949:CDS |
| ATCGCCCGGTGCATTCGCGG+TGG | 0.657134 | 1.3:+37003674 | MS.gene84949:CDS |
| TATGAGTAAATGGCTTGGTG+AGG | 0.658552 | 1.3:+37004551 | MS.gene84949:CDS |
| AACAAGCACATACGACCTTG+TGG | 0.658930 | 1.3:+37002865 | MS.gene84949:CDS |
| GGAAGAATACAAACTGTGGT+TGG | 0.659627 | 1.3:+37004858 | MS.gene84949:CDS |
| GTTGGAATATTGAGTGCACA+AGG | 0.667797 | 1.3:+37003889 | MS.gene84949:CDS |
| TTCCCTAGTCTATACCATTG+CGG | 0.674872 | 1.3:-37003199 | None:intergenic |
| AATGGAATGAACAATACACA+TGG | 0.675943 | 1.3:+37004025 | MS.gene84949:CDS |
| ATTTGTACGAGACAAGGAGA+TGG | 0.676331 | 1.3:+37003093 | MS.gene84949:CDS |
| CCGCCTCGTTGTCCTCCATG+TGG | 0.680531 | 1.3:-37002815 | None:intergenic |
| GGCGCCAAAGGACTATCTGG+TGG | 0.683541 | 1.3:-37003178 | None:intergenic |
| ATGGAATGAACAATACACAT+GGG | 0.694697 | 1.3:+37004026 | MS.gene84949:CDS |
| TGGCCACATGGAGGACAACG+AGG | 0.696057 | 1.3:+37002812 | MS.gene84949:CDS |
| CCACATGGAGGACAACGAGG+CGG | 0.699639 | 1.3:+37002815 | MS.gene84949:CDS |
| CTATGAACATTGTAGCAGTG+AGG | 0.715518 | 1.3:+37004394 | MS.gene84949:CDS |
| GGTAGAACATCTGTTCCACA+AGG | 0.716804 | 1.3:-37002880 | None:intergenic |
| GTTGGTGATATTGCAACACA+AGG | 0.736881 | 1.3:+37004876 | MS.gene84949:CDS |
| TGCTGGAAGAATACAAACTG+TGG | 0.747236 | 1.3:+37004854 | MS.gene84949:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAATGATGCAAAAAT+TGG | + | chr1.3:37004135-37004154 | MS.gene84949:CDS | 20.0% |
| !! | ACAGAAATAACAATCTTAAA+AGG | - | chr1.3:37004999-37005018 | None:intergenic | 20.0% |
| !! | AGTTTACAATATTAGATCTA+AGG | + | chr1.3:37003342-37003361 | MS.gene84949:CDS | 20.0% |
| !! | ATATGGATACAAAAATTTCA+TGG | + | chr1.3:37004727-37004746 | MS.gene84949:CDS | 20.0% |
| !! | TATGGATACAAAAATTTCAT+GGG | + | chr1.3:37004728-37004747 | MS.gene84949:CDS | 20.0% |
| !!! | AATTTTTGCATCATTAGTTT+TGG | - | chr1.3:37004136-37004155 | None:intergenic | 20.0% |
| ! | AACATGTAGAGAAAAATTGT+TGG | - | chr1.3:37004660-37004679 | None:intergenic | 25.0% |
| ! | AGCAAAATATGGTATGAAAT+GGG | + | chr1.3:37003966-37003985 | MS.gene84949:CDS | 25.0% |
| ! | ATGAACTTAAATTCTCAAGT+AGG | + | chr1.3:37003746-37003765 | MS.gene84949:CDS | 25.0% |
| ! | GGTATCTTAAACTATCTAAT+TGG | - | chr1.3:37004371-37004390 | None:intergenic | 25.0% |
| ! | TAGCAAAATATGGTATGAAA+TGG | + | chr1.3:37003965-37003984 | MS.gene84949:CDS | 25.0% |
| ! | TGTATCACTTATATACATTG+TGG | - | chr1.3:37003821-37003840 | None:intergenic | 25.0% |
| ! | TTTATGTTAATCCGAAACTT+TGG | + | chr1.3:37003365-37003384 | MS.gene84949:CDS | 25.0% |
| !! | GAAATTTTTGTATCCATATG+TGG | - | chr1.3:37004726-37004745 | None:intergenic | 25.0% |
| !! | TCATTGGAATATGGAATTTT+AGG | + | chr1.3:37004682-37004701 | MS.gene84949:CDS | 25.0% |
| !! | TCGTTTATCAACTTTAGAAA+TGG | + | chr1.3:37004170-37004189 | MS.gene84949:CDS | 25.0% |
| !!! | AATGCATTTTTGGAAGTAAA+GGG | - | chr1.3:37004326-37004345 | None:intergenic | 25.0% |
| !!! | AATTGTATCACTTTTTTCAG+GGG | + | chr1.3:37004521-37004540 | MS.gene84949:CDS | 25.0% |
| !!! | AGAATTGTATCACTTTTTTC+AGG | + | chr1.3:37004519-37004538 | MS.gene84949:CDS | 25.0% |
| !!! | GAATTGTATCACTTTTTTCA+GGG | + | chr1.3:37004520-37004539 | MS.gene84949:CDS | 25.0% |
| !!! | GTTTTTGACAATTGTCATTT+AGG | + | chr1.3:37004084-37004103 | MS.gene84949:CDS | 25.0% |
| !!! | TAATGCATTTTTGGAAGTAA+AGG | - | chr1.3:37004327-37004346 | None:intergenic | 25.0% |
| AAAGGAGAAGATACAATCAT+CGG | + | chr1.3:37003060-37003079 | MS.gene84949:CDS | 30.0% | |
| AATGGAATGAACAATACACA+TGG | + | chr1.3:37004025-37004044 | MS.gene84949:CDS | 30.0% | |
| ACAAACAAAAATGTTGCTCT+TGG | - | chr1.3:37004936-37004955 | None:intergenic | 30.0% | |
| ACATGTTTCTCATTGGAATA+TGG | + | chr1.3:37004673-37004692 | MS.gene84949:CDS | 30.0% | |
| ACCCTTAAATACCAAAGTTT+CGG | - | chr1.3:37003379-37003398 | None:intergenic | 30.0% | |
| ACCTTCTGGATTGAAAAAAA+TGG | + | chr1.3:37004233-37004252 | MS.gene84949:CDS | 30.0% | |
| ATATCTATGAGTAAATGGCT+TGG | + | chr1.3:37004546-37004565 | MS.gene84949:CDS | 30.0% | |
| ATCCGAAACTTTGGTATTTA+AGG | + | chr1.3:37003374-37003393 | MS.gene84949:CDS | 30.0% | |
| ATGGAATGAACAATACACAT+GGG | + | chr1.3:37004026-37004045 | MS.gene84949:CDS | 30.0% | |
| CCTTCTGGATTGAAAAAAAT+GGG | + | chr1.3:37004234-37004253 | MS.gene84949:CDS | 30.0% | |
| GCACACATAATTTACCTTTA+TGG | + | chr1.3:37004297-37004316 | MS.gene84949:CDS | 30.0% | |
| GCTTATTGTGTAGCAAAATA+TGG | + | chr1.3:37003955-37003974 | MS.gene84949:CDS | 30.0% | |
| GGGTAATATCTATGAGTAAA+TGG | + | chr1.3:37004541-37004560 | MS.gene84949:CDS | 30.0% | |
| GTAGCTAGAGATGATTATAT+TGG | + | chr1.3:37003115-37003134 | MS.gene84949:CDS | 30.0% | |
| TATAGACTAGGGAATTTGAA+AGG | + | chr1.3:37003208-37003227 | MS.gene84949:CDS | 30.0% | |
| TCCGAAACTTTGGTATTTAA+GGG | + | chr1.3:37003375-37003394 | MS.gene84949:CDS | 30.0% | |
| TGATAAGAATGAGGTATGAT+AGG | + | chr1.3:37004820-37004839 | MS.gene84949:CDS | 30.0% | |
| TGTAGAGAAAAATTGTTGGT+AGG | - | chr1.3:37004656-37004675 | None:intergenic | 30.0% | |
| TTGATGTGGATTCACATATA+TGG | + | chr1.3:37004466-37004485 | MS.gene84949:CDS | 30.0% | |
| TTTCTCTACATGTTTCTCAT+TGG | + | chr1.3:37004666-37004685 | MS.gene84949:CDS | 30.0% | |
| ! | AACGTTGAAAGATTTGGTTT+CGG | + | chr1.3:37003700-37003719 | MS.gene84949:CDS | 30.0% |
| ! | ATTTTTGTATCCATATGTGG+AGG | - | chr1.3:37004723-37004742 | None:intergenic | 30.0% |
| ! | GTGTATTGTTCATTCCATTT+TGG | - | chr1.3:37004024-37004043 | None:intergenic | 30.0% |
| ! | GTTTTTGTAAAAGCTCAAGT+TGG | + | chr1.3:37003454-37003473 | MS.gene84949:CDS | 30.0% |
| ! | TGAGCTTTTACAAAAACTTG+TGG | - | chr1.3:37003451-37003470 | None:intergenic | 30.0% |
| ! | TTTGACAATTGTCATTTAGG+TGG | + | chr1.3:37004087-37004106 | MS.gene84949:CDS | 30.0% |
| ! | TTTTTGTATCCATATGTGGA+GGG | - | chr1.3:37004722-37004741 | None:intergenic | 30.0% |
| !! | AAGATTGTTATTTCTGTTGC+TGG | + | chr1.3:37005002-37005021 | MS.gene84949:CDS | 30.0% |
| !! | AGATTGTTATTTCTGTTGCT+GGG | + | chr1.3:37005003-37005022 | MS.gene84949:CDS | 30.0% |
| !! | CTGAGAGTTTTAATCCAAAA+TGG | + | chr1.3:37004007-37004026 | MS.gene84949:CDS | 30.0% |
| !! | TTACTTGTTCTAAAACCTTC+TGG | + | chr1.3:37004219-37004238 | MS.gene84949:CDS | 30.0% |
| !!! | GAAGGTTTTAGAACAAGTAA+TGG | - | chr1.3:37004219-37004238 | None:intergenic | 30.0% |
| AAAGGTGAAACAAGAACAAG+AGG | + | chr1.3:37003226-37003245 | MS.gene84949:CDS | 35.0% | |
| AACCTCTTGAAGAAATTGCT+TGG | - | chr1.3:37005077-37005096 | None:intergenic | 35.0% | |
| AGCTTGTAATCATCTGTGTT+TGG | - | chr1.3:37002761-37002780 | None:intergenic | 35.0% | |
| AGTTATGTTAGCTGTTTGGA+TGG | + | chr1.3:37003252-37003271 | MS.gene84949:CDS | 35.0% | |
| CACAAGATGTGATAAGAATG+AGG | + | chr1.3:37004811-37004830 | MS.gene84949:CDS | 35.0% | |
| CCAACTTTCACTTCAACATA+AGG | - | chr1.3:37002968-37002987 | None:intergenic | 35.0% | |
| CCTTATGTTGAAGTGAAAGT+TGG | + | chr1.3:37002965-37002984 | MS.gene84949:CDS | 35.0% | |
| GTGAAGTTATGTTAGCTGTT+TGG | + | chr1.3:37003248-37003267 | MS.gene84949:CDS | 35.0% | |
| GTTATGTTAGCTGTTTGGAT+GGG | + | chr1.3:37003253-37003272 | MS.gene84949:CDS | 35.0% | |
| TCAACAACTTCTTTCCTAAG+AGG | - | chr1.3:37004438-37004457 | None:intergenic | 35.0% | |
| TCAGATTCAGCTTCAGTTAA+AGG | + | chr1.3:37003313-37003332 | MS.gene84949:CDS | 35.0% | |
| TGAACTAGTATTGTTGTCAC+TGG | - | chr1.3:37004594-37004613 | None:intergenic | 35.0% | |
| TGGTACAACGTTGAAAGATT+TGG | + | chr1.3:37003694-37003713 | MS.gene84949:CDS | 35.0% | |
| TGTTGAATACATGCTTGATG+TGG | + | chr1.3:37004452-37004471 | MS.gene84949:CDS | 35.0% | |
| TTACAAAAACTTGTGGTGGT+TGG | - | chr1.3:37003444-37003463 | None:intergenic | 35.0% | |
| ! | AACTCTTCATCTAGTTCATC+TGG | - | chr1.3:37004768-37004787 | None:intergenic | 35.0% |
| ! | AACTTTGGAAGCAACCAATT+GGG | + | chr1.3:37003857-37003876 | MS.gene84949:CDS | 35.0% |
| ! | ATTGTTGGTAGGATCAATTC+TGG | - | chr1.3:37004645-37004664 | None:intergenic | 35.0% |
| ! | GCTTTTACAAAAACTTGTGG+TGG | - | chr1.3:37003448-37003467 | None:intergenic | 35.0% |
| ! | GGATGCAAGTAATGCATTTT+TGG | - | chr1.3:37004336-37004355 | None:intergenic | 35.0% |
| ! | TAATCATCTGTGTTTGGCTT+TGG | - | chr1.3:37002755-37002774 | None:intergenic | 35.0% |
| ! | TCTAATTGGTTCACAGTGAA+TGG | - | chr1.3:37004357-37004376 | None:intergenic | 35.0% |
| ! | TGAAGTATTTGTACGAGACA+AGG | + | chr1.3:37003087-37003106 | MS.gene84949:CDS | 35.0% |
| ! | TGATACTTTTCCAACCTCTA+AGG | + | chr1.3:37004788-37004807 | MS.gene84949:CDS | 35.0% |
| ! | TTACCATTGCCTGTTTTCAT+TGG | - | chr1.3:37003922-37003941 | None:intergenic | 35.0% |
| !!! | CCCATTTTTTTCAATCCAGA+AGG | - | chr1.3:37004237-37004256 | None:intergenic | 35.0% |
| AAGAAATTGCTTGGCACAGA+AGG | - | chr1.3:37005068-37005087 | None:intergenic | 40.0% | |
| ACAACTTCTTTCCTAAGAGG+TGG | - | chr1.3:37004435-37004454 | None:intergenic | 40.0% | |
| ACAAGATCTTCGTTCCACAT+TGG | - | chr1.3:37003526-37003545 | None:intergenic | 40.0% | |
| AGAAGAAAACAAACCCCGAA+TGG | + | chr1.3:37003017-37003036 | MS.gene84949:CDS | 40.0% | |
| ATATTGCAACACAAGGTGAG+AGG | + | chr1.3:37004883-37004902 | MS.gene84949:CDS | 40.0% | |
| ATTTGTACGAGACAAGGAGA+TGG | + | chr1.3:37003093-37003112 | MS.gene84949:CDS | 40.0% | |
| CACCTTAGAGTTTGTCTTGA+AGG | + | chr1.3:37003772-37003791 | MS.gene84949:CDS | 40.0% | |
| CACCTTCAAGACAAACTCTA+AGG | - | chr1.3:37003777-37003796 | None:intergenic | 40.0% | |
| CCAAAAGTTATGACTGTGCA+AGG | - | chr1.3:37004063-37004082 | None:intergenic | 40.0% | |
| CCAACTTCAAGTATCCCAAT+TGG | - | chr1.3:37003874-37003893 | None:intergenic | 40.0% | |
| CCAATTGGGATACTTGAAGT+TGG | + | chr1.3:37003871-37003890 | MS.gene84949:CDS | 40.0% | |
| CGTTGAACAAATTCGAGACT+CGG | + | chr1.3:37003644-37003663 | MS.gene84949:CDS | 40.0% | |
| CTATGAACATTGTAGCAGTG+AGG | + | chr1.3:37004394-37004413 | MS.gene84949:CDS | 40.0% | |
| CTGCTACAATGTTCATAGCT+TGG | - | chr1.3:37004392-37004411 | None:intergenic | 40.0% | |
| GAATGAGGTATGATAGGCTT+AGG | + | chr1.3:37004826-37004845 | MS.gene84949:CDS | 40.0% | |
| GGAAGAATACAAACTGTGGT+TGG | + | chr1.3:37004858-37004877 | MS.gene84949:CDS | 40.0% | |
| GGACTTTCACCAATGAAAAC+AGG | + | chr1.3:37003910-37003929 | MS.gene84949:CDS | 40.0% | |
| GGTGGAAATTCTCAACAAAG+TGG | + | chr1.3:37004108-37004127 | MS.gene84949:CDS | 40.0% | |
| GTGAAAGTTGGCAACTACAA+AGG | + | chr1.3:37002977-37002996 | MS.gene84949:CDS | 40.0% | |
| GTTGGAATATTGAGTGCACA+AGG | + | chr1.3:37003889-37003908 | MS.gene84949:CDS | 40.0% | |
| TATCACATCTTGTGCCTTAG+AGG | - | chr1.3:37004805-37004824 | None:intergenic | 40.0% | |
| TCACCAATGAAAACAGGCAA+TGG | + | chr1.3:37003916-37003935 | MS.gene84949:CDS | 40.0% | |
| TCAGCTTCAGTTAAAGGTGA+AGG | + | chr1.3:37003319-37003338 | MS.gene84949:CDS | 40.0% | |
| TCTTCGTTCCACATTGGATT+CGG | - | chr1.3:37003520-37003539 | None:intergenic | 40.0% | |
| TGCCAAGCAATTTCTTCAAG+AGG | + | chr1.3:37005072-37005091 | MS.gene84949:CDS | 40.0% | |
| TGCTGGAAGAATACAAACTG+TGG | + | chr1.3:37004854-37004873 | MS.gene84949:CDS | 40.0% | |
| TTCCAAAGTTGTCTAGCAGT+TGG | - | chr1.3:37003847-37003866 | None:intergenic | 40.0% | |
| TTCCCTAGTCTATACCATTG+CGG | - | chr1.3:37003202-37003221 | None:intergenic | 40.0% | |
| ! | CAACTTTGGAAGCAACCAAT+TGG | + | chr1.3:37003856-37003875 | MS.gene84949:CDS | 40.0% |
| ! | CCTTGCACAGTCATAACTTT+TGG | + | chr1.3:37004060-37004079 | MS.gene84949:CDS | 40.0% |
| ! | CGAGTCTCGAATTTGTTCAA+CGG | - | chr1.3:37003646-37003665 | None:intergenic | 40.0% |
| ! | GACAATTGTCATTTAGGTGG+TGG | + | chr1.3:37004090-37004109 | MS.gene84949:CDS | 40.0% |
| ! | GCAAGTTTTCGCATTCTCAA+AGG | + | chr1.3:37003042-37003061 | MS.gene84949:CDS | 40.0% |
| ! | TGCGAAAACTTGCTTCCATT+CGG | - | chr1.3:37003035-37003054 | None:intergenic | 40.0% |
| ! | TTTCTGTTGCTGGGATTTTC+TGG | + | chr1.3:37005012-37005031 | MS.gene84949:CDS | 40.0% |
| !! | GAAGTAAAGGGTGTCCATAA+AGG | - | chr1.3:37004314-37004333 | None:intergenic | 40.0% |
| !! | GTTGGTGATATTGCAACACA+AGG | + | chr1.3:37004876-37004895 | MS.gene84949:CDS | 40.0% |
| !! | TATGAGTAAATGGCTTGGTG+AGG | + | chr1.3:37004551-37004570 | MS.gene84949:CDS | 40.0% |
| !! | TGGATTTGGTGGCAATTCTT+TGG | - | chr1.3:37002927-37002946 | None:intergenic | 40.0% |
| AAAGACACAAAGCCAGAGCT+AGG | + | chr1.3:37002782-37002801 | MS.gene84949:CDS | 45.0% | |
| AACAAGCACATACGACCTTG+TGG | + | chr1.3:37002865-37002884 | MS.gene84949:CDS | 45.0% | |
| AACATTGTAGCAGTGAGGCT+AGG | + | chr1.3:37004399-37004418 | MS.gene84949:CDS | 45.0% | |
| ACATCTTGTGCCTTAGAGGT+TGG | - | chr1.3:37004801-37004820 | None:intergenic | 45.0% | |
| AGCCAGAGCTAGGAGAAAAA+TGG | + | chr1.3:37002792-37002811 | MS.gene84949:CDS | 45.0% | |
| AGTTCCACCAGATAGTCCTT+TGG | + | chr1.3:37003174-37003193 | MS.gene84949:CDS | 45.0% | |
| CTAGGAGAAAAATGGCCACA+TGG | + | chr1.3:37002800-37002819 | MS.gene84949:CDS | 45.0% | |
| CTATCTGGTGGAACTCTTGT+TGG | - | chr1.3:37003169-37003188 | None:intergenic | 45.0% | |
| CTTCTGTCTTGTAACTGCTG+TGG | + | chr1.3:37004959-37004978 | MS.gene84949:CDS | 45.0% | |
| CTTTGACAACGCGAACATAG+AGG | - | chr1.3:37002904-37002923 | None:intergenic | 45.0% | |
| GAACAAATTCGAGACTCGGA+TGG | + | chr1.3:37003648-37003667 | MS.gene84949:CDS | 45.0% | |
| GACCAACTGCTAGACAACTT+TGG | + | chr1.3:37003842-37003861 | MS.gene84949:CDS | 45.0% | |
| GGCTTAGGCATCCAAAGTTT+AGG | + | chr1.3:37005033-37005052 | MS.gene84949:CDS | 45.0% | |
| GGCTTCAAGCTTTGCTTAGT+TGG | + | chr1.3:37004904-37004923 | MS.gene84949:CDS | 45.0% | |
| GGTAGAACATCTGTTCCACA+AGG | - | chr1.3:37002883-37002902 | None:intergenic | 45.0% | |
| TCTTTCGCTGTAAAGCCAAC+CGG | - | chr1.3:37002843-37002862 | None:intergenic | 45.0% | |
| TTCTTCAAGAGGTTGCCATC+TGG | + | chr1.3:37005083-37005102 | MS.gene84949:CDS | 45.0% | |
| ! | AGCACGAGGTTTTCTTCGAA+CGG | - | chr1.3:37003565-37003584 | None:intergenic | 45.0% |
| ! | CGAAAACTTGCTTCCATTCG+GGG | - | chr1.3:37003033-37003052 | None:intergenic | 45.0% |
| ! | CTCGAATTTGTTCAACGGCA+AGG | - | chr1.3:37003641-37003660 | None:intergenic | 45.0% |
| ! | GCGAAAACTTGCTTCCATTC+GGG | - | chr1.3:37003034-37003053 | None:intergenic | 45.0% |
| ! | GGCAACTTGCTCCTAAACTT+TGG | - | chr1.3:37005047-37005066 | None:intergenic | 45.0% |
| !! | ATTGGATTCGGCGTTTTGGT+CGG | - | chr1.3:37003508-37003527 | None:intergenic | 45.0% |
| !!! | GGTGGTTGGCTTTTATCATG+TGG | - | chr1.3:37003430-37003449 | None:intergenic | 45.0% |
| !!! | TTGCTGGGATTTTCTGGCTT+AGG | + | chr1.3:37005018-37005037 | MS.gene84949:CDS | 45.0% |
| ACCAAGACACCCTCCACATA+TGG | + | chr1.3:37004710-37004729 | MS.gene84949:CDS | 50.0% | |
| ACGCTTCCTGTGACTGGATT+TGG | - | chr1.3:37002941-37002960 | None:intergenic | 50.0% | |
| AGCATGCTATCAGCACCAGA+TGG | - | chr1.3:37005101-37005120 | None:intergenic | 50.0% | |
| CCAAAACGCCGAATCCAATG+TGG | + | chr1.3:37003509-37003528 | MS.gene84949:CDS | 50.0% | |
| CGCCGCAATGGTATAGACTA+GGG | + | chr1.3:37003197-37003216 | MS.gene84949:CDS | 50.0% | |
| CTTCCTGTGACTGGATTTGG+TGG | - | chr1.3:37002938-37002957 | None:intergenic | 50.0% | |
| GAAGAGCAGAACCACCTCTT+AGG | + | chr1.3:37004421-37004440 | MS.gene84949:CDS | 50.0% | |
| GAATCTGAATGCCATGCCTC+AGG | - | chr1.3:37003301-37003320 | None:intergenic | 50.0% | |
| GGAGAAAAATGGCCACATGG+AGG | + | chr1.3:37002803-37002822 | MS.gene84949:CDS | 50.0% | |
| GGCGTTCTCGAAGGTGATAA+AGG | + | chr1.3:37003721-37003740 | MS.gene84949:CDS | 50.0% | |
| TTGCCACCAAATCCAGTCAC+AGG | + | chr1.3:37002932-37002951 | MS.gene84949:CDS | 50.0% | |
| ! | AGAAAACCTCGTGCTGACGT+TGG | + | chr1.3:37003570-37003589 | MS.gene84949:CDS | 50.0% |
| ! | AGCTGATGAAGCGTTTCCTG+AGG | + | chr1.3:37003282-37003301 | MS.gene84949:CDS | 50.0% |
| ! | ATGAAGCGTTTCCTGAGGCA+TGG | + | chr1.3:37003287-37003306 | MS.gene84949:CDS | 50.0% |
| ! | CCACATTGGATTCGGCGTTT+TGG | - | chr1.3:37003512-37003531 | None:intergenic | 50.0% |
| ! | TTTGGTTTCGGCGTTCTCGA+AGG | + | chr1.3:37003712-37003731 | MS.gene84949:CDS | 50.0% |
| !! | GATAGGCTTAGGAGTGTTGC+TGG | + | chr1.3:37004837-37004856 | MS.gene84949:CDS | 50.0% |
| !! | GGCTTGGTGAGGTACAAAAG+TGG | + | chr1.3:37004562-37004581 | MS.gene84949:CDS | 50.0% |
| !! | TCCATATGTGGAGGGTGTCT+TGG | - | chr1.3:37004714-37004733 | None:intergenic | 50.0% |
| !!! | GGCCATTTTTCTCCTAGCTC+TGG | - | chr1.3:37002797-37002816 | None:intergenic | 50.0% |
| ATAGTCCTTTGGCGCCGCAA+TGG | + | chr1.3:37003185-37003204 | MS.gene84949:CDS | 55.0% | |
| CTATACCATTGCGGCGCCAA+AGG | - | chr1.3:37003193-37003212 | None:intergenic | 55.0% | |
| GCCACAACTTCGTCTTTCCC+CGG | - | chr1.3:37003610-37003629 | None:intergenic | 55.0% | |
| GCGCCGCAATGGTATAGACT+AGG | + | chr1.3:37003196-37003215 | MS.gene84949:CDS | 55.0% | |
| GGATCTACGCTTCCTGTGAC+TGG | - | chr1.3:37002947-37002966 | None:intergenic | 55.0% | |
| GTTGGAGAACAAGGCGAGTC+CGG | + | chr1.3:37003588-37003607 | MS.gene84949:CDS | 55.0% | |
| TCCGGGGAAAGACGAAGTTG+TGG | + | chr1.3:37003606-37003625 | MS.gene84949:CDS | 55.0% | |
| TGTTCTCCAACGTCAGCACG+AGG | - | chr1.3:37003579-37003598 | None:intergenic | 55.0% | |
| TTGGAGAACAAGGCGAGTCC+GGG | + | chr1.3:37003589-37003608 | MS.gene84949:CDS | 55.0% | |
| TTGTACCACCGCGAATGCAC+CGG | - | chr1.3:37003682-37003701 | None:intergenic | 55.0% | |
| ! | CGTGCTGACGTTGGAGAACA+AGG | + | chr1.3:37003579-37003598 | MS.gene84949:CDS | 55.0% |
| !! | GTGTTTGGCTTTGGAGCTGC+AGG | - | chr1.3:37002746-37002765 | None:intergenic | 55.0% |
| ATCATCGCCCGGTGCATTCG+CGG | + | chr1.3:37003671-37003690 | MS.gene84949:CDS | 60.0% | |
| CCACATGGAGGACAACGAGG+CGG | + | chr1.3:37002815-37002834 | MS.gene84949:CDS | 60.0% | |
| GACTCGGATGGATCATCGCC+CGG | + | chr1.3:37003660-37003679 | MS.gene84949:CDS | 60.0% | |
| GGCGCCAAAGGACTATCTGG+TGG | - | chr1.3:37003181-37003200 | None:intergenic | 60.0% | |
| TGCGGCGCCAAAGGACTATC+TGG | - | chr1.3:37003184-37003203 | None:intergenic | 60.0% | |
| TGGAGAACAAGGCGAGTCCG+GGG | + | chr1.3:37003590-37003609 | MS.gene84949:CDS | 60.0% | |
| TGGCCACATGGAGGACAACG+AGG | + | chr1.3:37002812-37002831 | MS.gene84949:CDS | 60.0% | |
| TGTACCACCGCGAATGCACC+GGG | - | chr1.3:37003681-37003700 | None:intergenic | 60.0% | |
| CCGCCTCGTTGTCCTCCATG+TGG | - | chr1.3:37002818-37002837 | None:intergenic | 65.0% | |
| GACAACGAGGCGGAACCGGT+TGG | + | chr1.3:37002825-37002844 | MS.gene84949:CDS | 65.0% | |
| GGAGGACAACGAGGCGGAAC+CGG | + | chr1.3:37002821-37002840 | MS.gene84949:CDS | 65.0% | |
| ATCGCCCGGTGCATTCGCGG+TGG | + | chr1.3:37003674-37003693 | MS.gene84949:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 37002728 | 37005124 | 37002728 | ID=MS.gene84949 |
| chr1.3 | mRNA | 37002728 | 37005124 | 37002728 | ID=MS.gene84949.t1;Parent=MS.gene84949 |
| chr1.3 | exon | 37002728 | 37005124 | 37002728 | ID=MS.gene84949.t1.exon1;Parent=MS.gene84949.t1 |
| chr1.3 | CDS | 37002728 | 37005124 | 37002728 | ID=cds.MS.gene84949.t1;Parent=MS.gene84949.t1 |
| Gene Sequence |
| Protein sequence |
