Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57362.t1 | XP_013456240.1 | 98.7 | 770 | 10 | 0 | 1 | 770 | 1 | 770 | 0.00E+00 | 1550.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57362.t1 | Q9M2R0 | 80.5 | 774 | 146 | 3 | 1 | 770 | 1 | 773 | 0.0e+00 | 1311.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57362.t1 | A0A072ULK6 | 98.7 | 770 | 10 | 0 | 1 | 770 | 1 | 770 | 0.0e+00 | 1550.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene97685 | MS.gene57362 | PPI |
| MS.gene84949 | MS.gene57362 | PPI |
| MS.gene57362 | MS.gene97681 | PPI |
| MS.gene018791 | MS.gene57362 | PPI |
| MS.gene57362 | MS.gene84943 | PPI |
| MS.gene57362 | MS.gene04595 | PPI |
| MS.gene056972 | MS.gene57362 | PPI |
| MS.gene57362 | MS.gene072379 | PPI |
| MS.gene018794 | MS.gene57362 | PPI |
| MS.gene57362 | MS.gene90010 | PPI |
| MS.gene57362 | MS.gene017959 | PPI |
| MS.gene90013 | MS.gene57362 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57362.t1 | MTR_4g066150 | 98.701 | 770 | 10 | 0 | 1 | 770 | 1 | 770 | 0.0 | 1582 |
| MS.gene57362.t1 | MTR_7g092770 | 81.338 | 777 | 136 | 7 | 1 | 770 | 1 | 775 | 0.0 | 1335 |
| MS.gene57362.t1 | MTR_0305s0020 | 82.065 | 775 | 133 | 4 | 1 | 770 | 1 | 774 | 0.0 | 1333 |
| MS.gene57362.t1 | MTR_5g010390 | 67.141 | 773 | 243 | 4 | 9 | 770 | 235 | 1007 | 0.0 | 1133 |
| MS.gene57362.t1 | MTR_3g027150 | 65.414 | 798 | 247 | 7 | 2 | 770 | 25 | 822 | 0.0 | 1119 |
| MS.gene57362.t1 | MTR_4g023460 | 66.836 | 787 | 239 | 8 | 6 | 770 | 356 | 1142 | 0.0 | 1107 |
| MS.gene57362.t1 | MTR_0291s0010 | 64.848 | 788 | 255 | 6 | 5 | 770 | 10 | 797 | 0.0 | 1097 |
| MS.gene57362.t1 | MTR_4g033215 | 64.524 | 778 | 267 | 6 | 1 | 770 | 268 | 1044 | 0.0 | 1053 |
| MS.gene57362.t1 | MTR_8g031270 | 60.000 | 775 | 293 | 7 | 9 | 770 | 233 | 1003 | 0.0 | 999 |
| MS.gene57362.t1 | MTR_7g076900 | 59.873 | 785 | 286 | 7 | 9 | 770 | 235 | 1013 | 0.0 | 988 |
| MS.gene57362.t1 | MTR_4g057675 | 56.684 | 778 | 313 | 9 | 8 | 770 | 15 | 783 | 0.0 | 865 |
| MS.gene57362.t1 | MTR_4g071870 | 54.082 | 784 | 301 | 11 | 2 | 770 | 10 | 749 | 0.0 | 826 |
| MS.gene57362.t1 | MTR_4g107850 | 52.100 | 762 | 315 | 15 | 33 | 770 | 303 | 1038 | 0.0 | 785 |
| MS.gene57362.t1 | MTR_6g027540 | 50.329 | 761 | 334 | 14 | 31 | 770 | 272 | 1009 | 0.0 | 757 |
| MS.gene57362.t1 | MTR_6g028050 | 49.277 | 761 | 347 | 13 | 31 | 770 | 284 | 1026 | 0.0 | 746 |
| MS.gene57362.t1 | MTR_1g015540 | 48.087 | 784 | 374 | 13 | 7 | 770 | 3 | 773 | 0.0 | 699 |
| MS.gene57362.t1 | MTR_5g096980 | 39.949 | 781 | 426 | 12 | 9 | 770 | 7 | 763 | 0.0 | 586 |
| MS.gene57362.t1 | MTR_4g023250 | 64.615 | 130 | 44 | 1 | 640 | 769 | 1 | 128 | 1.68e-52 | 178 |
| MS.gene57362.t1 | MTR_4g023230 | 50.820 | 122 | 45 | 1 | 557 | 678 | 49 | 155 | 2.27e-32 | 123 |
| MS.gene57362.t1 | MTR_4g023390 | 48.544 | 103 | 31 | 2 | 644 | 746 | 17 | 97 | 1.66e-22 | 93.2 |
| MS.gene57362.t1 | MTR_4g023240 | 63.333 | 60 | 22 | 0 | 491 | 550 | 10 | 69 | 5.65e-19 | 82.0 |
| MS.gene57362.t1 | MTR_7g052280 | 50.633 | 79 | 13 | 4 | 248 | 324 | 1 | 55 | 4.29e-14 | 67.8 |
| MS.gene57362.t1 | MTR_2g027360 | 33.594 | 128 | 74 | 4 | 42 | 163 | 3 | 125 | 9.62e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57362.t1 | AT3G57880 | 80.491 | 774 | 146 | 3 | 1 | 770 | 1 | 773 | 0.0 | 1338 |
| MS.gene57362.t1 | AT3G57880 | 80.491 | 774 | 146 | 3 | 1 | 770 | 1 | 773 | 0.0 | 1338 |
| MS.gene57362.t1 | AT3G57880 | 80.491 | 774 | 146 | 3 | 1 | 770 | 1 | 773 | 0.0 | 1338 |
| MS.gene57362.t1 | AT3G57880 | 80.491 | 774 | 146 | 3 | 1 | 770 | 1 | 773 | 0.0 | 1338 |
| MS.gene57362.t1 | AT5G12970 | 81.429 | 770 | 142 | 1 | 1 | 770 | 1 | 769 | 0.0 | 1312 |
| MS.gene57362.t1 | AT1G51570 | 78.507 | 777 | 159 | 5 | 1 | 770 | 1 | 776 | 0.0 | 1298 |
| MS.gene57362.t1 | AT4G11610 | 65.977 | 773 | 251 | 5 | 9 | 770 | 240 | 1011 | 0.0 | 1120 |
| MS.gene57362.t1 | AT4G11610 | 65.977 | 773 | 251 | 5 | 9 | 770 | 236 | 1007 | 0.0 | 1120 |
| MS.gene57362.t1 | AT4G11610 | 65.977 | 773 | 251 | 5 | 9 | 770 | 103 | 874 | 0.0 | 1120 |
| MS.gene57362.t1 | AT5G06850 | 65.649 | 786 | 249 | 6 | 6 | 770 | 9 | 794 | 0.0 | 1112 |
| MS.gene57362.t1 | AT5G48060 | 65.110 | 771 | 253 | 6 | 12 | 770 | 270 | 1036 | 0.0 | 1088 |
| MS.gene57362.t1 | AT1G22610 | 64.413 | 784 | 264 | 7 | 1 | 770 | 247 | 1029 | 0.0 | 1061 |
| MS.gene57362.t1 | AT4G00700 | 58.015 | 786 | 309 | 8 | 2 | 770 | 225 | 1006 | 0.0 | 956 |
| MS.gene57362.t1 | AT4G00700 | 58.015 | 786 | 309 | 8 | 2 | 770 | 225 | 1006 | 0.0 | 956 |
| MS.gene57362.t1 | AT1G04150 | 57.614 | 788 | 298 | 11 | 6 | 770 | 238 | 1012 | 0.0 | 923 |
| MS.gene57362.t1 | AT4G20080 | 58.182 | 770 | 303 | 11 | 10 | 770 | 15 | 774 | 0.0 | 918 |
| MS.gene57362.t1 | AT3G61300 | 55.757 | 773 | 318 | 12 | 5 | 770 | 217 | 972 | 0.0 | 910 |
| MS.gene57362.t1 | AT1G74720 | 50.125 | 800 | 353 | 16 | 2 | 770 | 297 | 1081 | 0.0 | 795 |
| MS.gene57362.t1 | AT3G03680 | 50.326 | 767 | 329 | 16 | 33 | 770 | 274 | 1017 | 0.0 | 757 |
| MS.gene57362.t1 | AT5G17980 | 49.469 | 754 | 349 | 14 | 31 | 770 | 314 | 1049 | 0.0 | 754 |
| MS.gene57362.t1 | AT3G61720 | 37.838 | 814 | 435 | 22 | 6 | 770 | 4 | 795 | 1.21e-164 | 496 |
| MS.gene57362.t1 | AT5G03435 | 40.233 | 773 | 410 | 23 | 6 | 763 | 4 | 739 | 5.24e-163 | 490 |
| MS.gene57362.t1 | AT5G03435 | 42.334 | 574 | 301 | 15 | 6 | 570 | 4 | 556 | 1.01e-137 | 418 |
| MS.gene57362.t1 | AT5G44760 | 49.624 | 399 | 156 | 9 | 8 | 399 | 4 | 364 | 2.73e-119 | 368 |
| MS.gene57362.t1 | AT5G44760 | 22.394 | 518 | 274 | 16 | 190 | 672 | 27 | 451 | 1.90e-20 | 95.9 |
| MS.gene57362.t1 | AT1G03370 | 32.787 | 122 | 78 | 2 | 42 | 161 | 3 | 122 | 2.80e-11 | 67.8 |
| MS.gene57362.t1 | AT1G03370 | 32.787 | 122 | 78 | 2 | 42 | 161 | 3 | 122 | 2.82e-11 | 67.8 |
Find 188 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATTCCATATAGGATTTA+TGG | 0.089271 | 4.4:-40008691 | None:intergenic |
| ATGTATCCGGCTTGCAAATT+TGG | 0.162490 | 4.4:-40008919 | None:intergenic |
| GTTTGATCGCTTTCGGAAAA+TGG | 0.180986 | 4.4:+40009690 | MS.gene57362:CDS |
| TTTCATTATTCTGAAGAAAT+TGG | 0.197860 | 4.4:-40009657 | None:intergenic |
| TTGCAAGCCGGATACATTTA+AGG | 0.198327 | 4.4:+40008925 | MS.gene57362:CDS |
| TCATATCCTATTCATAATAT+TGG | 0.235720 | 4.4:+40009760 | MS.gene57362:CDS |
| AGGGCAAACTCATGAGAATT+TGG | 0.271982 | 4.4:-40007973 | None:intergenic |
| TTCTCATGAGTTTGCCCTTA+AGG | 0.273893 | 4.4:+40007978 | MS.gene57362:CDS |
| CAGTTCCTCTTAATTTCTTT+AGG | 0.274083 | 4.4:+40010218 | MS.gene57362:CDS |
| TCGGATCCAGGCTTCTGTTT+TGG | 0.277864 | 4.4:+40008248 | MS.gene57362:CDS |
| ACATGTTCATGATTGGAATA+TGG | 0.280190 | 4.4:+40009822 | MS.gene57362:CDS |
| ATGAGGCATTTCCTGATTCT+TGG | 0.294072 | 4.4:+40008463 | MS.gene57362:CDS |
| TTGGAATATGGAACTTTAGA+TGG | 0.319453 | 4.4:+40009834 | MS.gene57362:CDS |
| GATACATTTAAGGTTATGTT+TGG | 0.326495 | 4.4:+40008935 | MS.gene57362:CDS |
| CTCCCAAGCTTTGGTATGTC+AGG | 0.329807 | 4.4:+40008550 | MS.gene57362:CDS |
| TGAAAACCATAAATCCTATA+TGG | 0.331183 | 4.4:+40008685 | MS.gene57362:CDS |
| TTCTTATACATGTTCATGAT+TGG | 0.336283 | 4.4:+40009815 | MS.gene57362:CDS |
| ATTTGTCTCCTCCATGTAAA+TGG | 0.342602 | 4.4:-40009265 | None:intergenic |
| ACCTAGTGTTCACCGGCTTA+TGG | 0.344461 | 4.4:-40008848 | None:intergenic |
| ATTGTTGGAAGTATTAGTTC+AGG | 0.346883 | 4.4:-40009791 | None:intergenic |
| TGTTCGGCGTTGTCTCCTTA+AGG | 0.365819 | 4.4:-40007993 | None:intergenic |
| TTATCGAGTTTGATCGCTTT+CGG | 0.366151 | 4.4:+40009683 | MS.gene57362:CDS |
| TGTGGAGCCAAAGGGCTATC+TGG | 0.367731 | 4.4:-40008360 | None:intergenic |
| TGATTCAGCTCGACCATCTA+AGG | 0.369771 | 4.4:+40009513 | MS.gene57362:CDS |
| GGATAGGGAAGGTAAGAATT+AGG | 0.373057 | 4.4:+40009300 | MS.gene57362:CDS |
| GAGAGTTAATGCTTGCAGTT+TGG | 0.375142 | 4.4:+40008424 | MS.gene57362:CDS |
| GGGAGAGTTCAAAGTGTTAT+AGG | 0.375992 | 4.4:+40010007 | MS.gene57362:CDS |
| CTTTGGCTCCACAATGGTAT+AGG | 0.376988 | 4.4:+40008370 | MS.gene57362:CDS |
| CCATCTACTGTTATCACAAT+AGG | 0.380739 | 4.4:+40009227 | MS.gene57362:CDS |
| GTTATAGCAGATGACTTTGT+AGG | 0.383168 | 4.4:+40008294 | MS.gene57362:CDS |
| GTCAAATCCCCAGTGGAATC+AGG | 0.385686 | 4.4:+40008206 | MS.gene57362:CDS |
| CATTTGTTCGACTAGGTCAT+AGG | 0.388513 | 4.4:-40008055 | None:intergenic |
| GCTTATTGCGTAGCAAAATT+CGG | 0.400530 | 4.4:+40009122 | MS.gene57362:CDS |
| TCTACTACTTCTTTCCTTAA+CGG | 0.401686 | 4.4:-40009584 | None:intergenic |
| GCATCAGAATGCCAAGAATC+AGG | 0.404599 | 4.4:-40008474 | None:intergenic |
| AACATGTATAAGAAAATTGT+TGG | 0.406603 | 4.4:-40009806 | None:intergenic |
| GGTTTGATCAAATTTGCAAT+TGG | 0.408748 | 4.4:+40009711 | MS.gene57362:CDS |
| CCTATTGTGATAACAGTAGA+TGG | 0.409352 | 4.4:-40009227 | None:intergenic |
| GAGAAGTTCAATTGGCTGTA+AGG | 0.412356 | 4.4:+40009405 | MS.gene57362:CDS |
| GCACTACATTCATCCCTTAT+CGG | 0.413847 | 4.4:+40009490 | MS.gene57362:CDS |
| TTTACTTGTCTCCCAAGCTT+TGG | 0.414127 | 4.4:+40008541 | MS.gene57362:CDS |
| AAAGAACCAATATTATGAAT+AGG | 0.415882 | 4.4:-40009766 | None:intergenic |
| CCATCAGGTGTGAAGAAAAC+AGG | 0.419177 | 4.4:+40009383 | MS.gene57362:CDS |
| AACTCTTCGTCTAGTTCATC+GGG | 0.419737 | 4.4:-40009914 | None:intergenic |
| CTATCTGGTGGTATACGTTT+CGG | 0.421790 | 4.4:-40008345 | None:intergenic |
| TCCAAGCTTCACTTCAACAT+AGG | 0.425674 | 4.4:-40008148 | None:intergenic |
| GCCAAGACACCCTCCACATA+TGG | 0.428256 | 4.4:+40009859 | MS.gene57362:CDS |
| AACATAACCTTAAATGTATC+CGG | 0.430234 | 4.4:-40008932 | None:intergenic |
| GTTCGGCGTTGTCTCCTTAA+GGG | 0.430999 | 4.4:-40007992 | None:intergenic |
| GAAAACAGGAGAAGTTCAAT+TGG | 0.436493 | 4.4:+40009397 | MS.gene57362:CDS |
| GGATGAATGTAGTGCATCTT+CGG | 0.437984 | 4.4:-40009482 | None:intergenic |
| GTGTCGCTTGATGCCTTAGA+TGG | 0.442072 | 4.4:-40009526 | None:intergenic |
| CAAGTTGTGTTACTAATCAC+TGG | 0.449588 | 4.4:+40010151 | MS.gene57362:CDS |
| TGTCGCAGCCGAGCCGTTCG+AGG | 0.450984 | 4.4:+40008725 | MS.gene57362:CDS |
| CATTTAAGGTTATGTTTGGA+TGG | 0.455868 | 4.4:+40008939 | MS.gene57362:CDS |
| TCGAGCTGAATCACCGATAA+GGG | 0.457219 | 4.4:-40009503 | None:intergenic |
| ATGACTTTGTAGGGAGGGTG+TGG | 0.457243 | 4.4:+40008304 | MS.gene57362:CDS |
| TAAGGTTATGTTTGGATGGA+GGG | 0.461239 | 4.4:+40008943 | MS.gene57362:CDS |
| TTCCTCTTAATTTCTTTAGG+AGG | 0.462400 | 4.4:+40010221 | MS.gene57362:CDS |
| AGTATTGGTATTCTAGAAGT+AGG | 0.464674 | 4.4:+40009038 | MS.gene57362:CDS |
| TGACTTCTTCTCAAAATGCT+TGG | 0.466042 | 4.4:-40008187 | None:intergenic |
| ATTAGTAACACAACTTGAAA+AGG | 0.467619 | 4.4:-40010145 | None:intergenic |
| AACCTCCTAAAGAAATTAAG+AGG | 0.470949 | 4.4:-40010223 | None:intergenic |
| TTCCATAGCTGCTTCGCCGT+TGG | 0.471657 | 4.4:-40009011 | None:intergenic |
| CCAAGCTTCACTTCAACATA+GGG | 0.471707 | 4.4:-40008147 | None:intergenic |
| ACTGCCCCTGCTCCAATGTT+CGG | 0.472062 | 4.4:-40008009 | None:intergenic |
| GGCCAACGGCGAAGCAGCTA+TGG | 0.472843 | 4.4:+40009009 | MS.gene57362:CDS |
| TCTTCCACAGTTAAAACTAA+AGG | 0.474872 | 4.4:-40008750 | None:intergenic |
| TCCATATGTGGAGGGTGTCT+TGG | 0.475204 | 4.4:-40009860 | None:intergenic |
| ATCAAATCCTCATTCCATAT+AGG | 0.477985 | 4.4:-40008699 | None:intergenic |
| TTCGACTAGGTCATAGGTGC+AGG | 0.481116 | 4.4:-40008049 | None:intergenic |
| GTTAATGCTTGCAGTTTGGA+TGG | 0.482127 | 4.4:+40008428 | MS.gene57362:CDS |
| ATGTCCGAGGATCGTGATGT+AGG | 0.482898 | 4.4:-40009947 | None:intergenic |
| AAACTCTTCGTCTAGTTCAT+CGG | 0.483861 | 4.4:-40009915 | None:intergenic |
| GTCGAGCTGAATCACCGATA+AGG | 0.485384 | 4.4:-40009504 | None:intergenic |
| TTTGATAACAACCATTTACA+TGG | 0.487901 | 4.4:+40009254 | MS.gene57362:CDS |
| GAGACAAATCAAAGGATTCT+CGG | 0.488421 | 4.4:+40009279 | MS.gene57362:CDS |
| AAATCAAAGGATTCTCGGAT+AGG | 0.492265 | 4.4:+40009284 | MS.gene57362:CDS |
| ACAACGCCGAACATTGGAGC+AGG | 0.497199 | 4.4:+40008003 | MS.gene57362:CDS |
| TTGTTGGAAGTATTAGTTCA+GGG | 0.498579 | 4.4:-40009790 | None:intergenic |
| GCCGAGCTGAGCCACCGTTA+AGG | 0.498838 | 4.4:+40009570 | MS.gene57362:CDS |
| TGCAAGCATTAACTCTCCCT+TGG | 0.498863 | 4.4:-40008418 | None:intergenic |
| CTCATCACAGTAGTGATCTT+AGG | 0.500725 | 4.4:+40008988 | MS.gene57362:CDS |
| TATCGACGATTGTCCTAGTT+CGG | 0.501070 | 4.4:-40009157 | None:intergenic |
| AGGCGAAAACCTGATTCCAC+TGG | 0.501075 | 4.4:-40008215 | None:intergenic |
| CCCTATGTTGAAGTGAAGCT+TGG | 0.501694 | 4.4:+40008147 | MS.gene57362:CDS |
| GACCCTGACATACCAAAGCT+TGG | 0.501973 | 4.4:-40008553 | None:intergenic |
| ATCTTGCAACTCAAGGAGAA+AGG | 0.507382 | 4.4:+40010032 | MS.gene57362:CDS |
| GAATTAGTATCGATGTGATC+GGG | 0.508160 | 4.4:-40009739 | None:intergenic |
| TTAAGGTTATGTTTGGATGG+AGG | 0.508953 | 4.4:+40008942 | MS.gene57362:CDS |
| GGTCAATGTAATCGAAGCTC+AGG | 0.509959 | 4.4:+40008572 | MS.gene57362:CDS |
| TGTAATCGAAGCTCAGGACT+TGG | 0.512090 | 4.4:+40008578 | MS.gene57362:CDS |
| CATTCTGATGCAGCAATGGT+TGG | 0.514711 | 4.4:+40008486 | MS.gene57362:CDS |
| ACCCTGACATACCAAAGCTT+GGG | 0.516304 | 4.4:-40008552 | None:intergenic |
| CATAAATCCTATATGGAATG+AGG | 0.520218 | 4.4:+40008692 | MS.gene57362:CDS |
| TTATAGCAGATGACTTTGTA+GGG | 0.520298 | 4.4:+40008295 | MS.gene57362:CDS |
| GTGTATTGTTCATTCCACTT+TGG | 0.520325 | 4.4:-40009188 | None:intergenic |
| TGTCCGAGGATCGTGATGTA+GGG | 0.528130 | 4.4:-40009946 | None:intergenic |
| TCCTTAACGGTGGCTCAGCT+CGG | 0.530257 | 4.4:-40009571 | None:intergenic |
| GGATGGAGGGTACCACGTGC+TGG | 0.531458 | 4.4:+40008956 | MS.gene57362:CDS |
| ACCATAAGCCGGTGAACACT+AGG | 0.534500 | 4.4:+40008847 | MS.gene57362:CDS |
| AAGAAATTAAGAGGAACTGA+TGG | 0.534713 | 4.4:-40010214 | None:intergenic |
| CAGCTATGGAAGTCAAGTAT+TGG | 0.535757 | 4.4:+40009023 | MS.gene57362:CDS |
| CTTCTCTAAAGATCGGATCC+AGG | 0.535901 | 4.4:+40008236 | MS.gene57362:CDS |
| AAGGAGACAACGCCGAACAT+TGG | 0.538827 | 4.4:+40007997 | MS.gene57362:CDS |
| GTATTGGTATTCTAGAAGTA+GGG | 0.539882 | 4.4:+40009039 | MS.gene57362:CDS |
| CTATACCATTGTGGAGCCAA+AGG | 0.540343 | 4.4:-40008369 | None:intergenic |
| TAAAGGTTCCTCGAACGGCT+CGG | 0.541623 | 4.4:-40008733 | None:intergenic |
| GATGGATTTAGTACTAAAAG+AGG | 0.542003 | 4.4:-40009365 | None:intergenic |
| TCACCTCCAAAACAGAAGCC+TGG | 0.542592 | 4.4:-40008254 | None:intergenic |
| AGCAGATGACTTTGTAGGGA+GGG | 0.543188 | 4.4:+40008299 | MS.gene57362:CDS |
| AATCAAAGGATTCTCGGATA+GGG | 0.545049 | 4.4:+40009285 | MS.gene57362:CDS |
| GAAAAGCACTTGGTTGTCGA+AGG | 0.545396 | 4.4:+40008882 | MS.gene57362:CDS |
| TGAATTAGTATCGATGTGAT+CGG | 0.553091 | 4.4:-40009740 | None:intergenic |
| CTTTGCAGATGGTGCAAAGG+AGG | 0.557409 | 4.4:+40008820 | MS.gene57362:CDS |
| TCCCAAGCTTTGGTATGTCA+GGG | 0.559256 | 4.4:+40008551 | MS.gene57362:CDS |
| TTGGCATTCTGATGCAGCAA+TGG | 0.559991 | 4.4:+40008482 | MS.gene57362:CDS |
| TTAATGCTTGCAGTTTGGAT+GGG | 0.561743 | 4.4:+40008429 | MS.gene57362:CDS |
| TACGATCGATTAAGAAGCAT+CGG | 0.562424 | 4.4:+40009983 | MS.gene57362:CDS |
| GACAGAAGTGGATCCGAACT+AGG | 0.563556 | 4.4:+40009144 | MS.gene57362:CDS |
| ATAGGTGATCTTGCAACTCA+AGG | 0.563643 | 4.4:+40010025 | MS.gene57362:CDS |
| GCAAACTCATGAGAATTTGG+TGG | 0.569666 | 4.4:-40007970 | None:intergenic |
| CTTTGACGACACGAACATAG+AGG | 0.571341 | 4.4:-40008083 | None:intergenic |
| TATACCACCAGATAGCCCTT+TGG | 0.574314 | 4.4:+40008353 | MS.gene57362:CDS |
| GGCGAAAACCTGATTCCACT+GGG | 0.574431 | 4.4:-40008214 | None:intergenic |
| GTTCCCTACATCACGATCCT+CGG | 0.575947 | 4.4:+40009943 | MS.gene57362:CDS |
| TGATGCAGCAATGGTTGGAT+CGG | 0.576790 | 4.4:+40008491 | MS.gene57362:CDS |
| TTGCCTACAAAAGATGTCAC+TGG | 0.577219 | 4.4:+40008114 | MS.gene57362:CDS |
| CATCTTCGGCAACAGTGGCA+TGG | 0.577421 | 4.4:-40009468 | None:intergenic |
| TGCTACGCAATAAGCATCTG+TGG | 0.577714 | 4.4:-40009114 | None:intergenic |
| TTTAAGTTGGAGAGATCCAA+GGG | 0.577772 | 4.4:+40010066 | MS.gene57362:CDS |
| TCGATAGCTTTAGTCCAAAG+TGG | 0.578765 | 4.4:+40009174 | MS.gene57362:CDS |
| TATACCATTGTGGAGCCAAA+GGG | 0.578790 | 4.4:-40008368 | None:intergenic |
| TTATGCCACCTAGTGTTCAC+CGG | 0.578965 | 4.4:-40008855 | None:intergenic |
| GCATAATCTTGAAAAGCACT+TGG | 0.580460 | 4.4:+40008872 | MS.gene57362:CDS |
| GATAGACTAGTGTCCATATG+TGG | 0.580812 | 4.4:-40009872 | None:intergenic |
| CTCCTTTGCACCATCTGCAA+AGG | 0.581461 | 4.4:-40008819 | None:intergenic |
| GGTATTGCATTTGTTCGACT+AGG | 0.585026 | 4.4:-40008062 | None:intergenic |
| AAAACTAAAGGTTCCTCGAA+CGG | 0.585508 | 4.4:-40008738 | None:intergenic |
| GATGGGAACTCAAGCAGATG+AGG | 0.587116 | 4.4:+40008446 | MS.gene57362:CDS |
| TTCCTTTGCAGATGGTGCAA+AGG | 0.587897 | 4.4:+40008817 | MS.gene57362:CDS |
| AGTGAAGCTTGGAAACTACA+AGG | 0.589926 | 4.4:+40008158 | MS.gene57362:CDS |
| TAGCAAAATTCGGACAGAAG+TGG | 0.592882 | 4.4:+40009132 | MS.gene57362:CDS |
| TGGTTCCAAGTGATAAAAGC+CGG | 0.597256 | 4.4:+40008598 | MS.gene57362:CDS |
| AACGCCGAACATTGGAGCAG+GGG | 0.599485 | 4.4:+40008005 | MS.gene57362:CDS |
| ATGAAAACTAGAGATGGTAG+AGG | 0.599539 | 4.4:+40009089 | MS.gene57362:CDS |
| TTAACTGTGGAAGACAGGGT+TGG | 0.599697 | 4.4:+40008759 | MS.gene57362:CDS |
| TAGCAAAGGTGAGAAAGCCA+AGG | 0.601045 | 4.4:+40008401 | MS.gene57362:CDS |
| ATCGATTAAGAAGCATCGGA+GGG | 0.601165 | 4.4:+40009987 | MS.gene57362:CDS |
| AGGACACCAAATTTGCAAGC+CGG | 0.602613 | 4.4:+40008913 | MS.gene57362:CDS |
| ACTACTTCTTTCCTTAACGG+TGG | 0.605059 | 4.4:-40009581 | None:intergenic |
| AGTGGAATGAACAATACACT+TGG | 0.605319 | 4.4:+40009192 | MS.gene57362:CDS |
| ATGCCGATGAAAACTAGAGA+TGG | 0.607581 | 4.4:+40009083 | MS.gene57362:CDS |
| CAACGCCGAACATTGGAGCA+GGG | 0.608071 | 4.4:+40008004 | MS.gene57362:CDS |
| GAATATGGAACTTTAGATGG+AGG | 0.609696 | 4.4:+40009837 | MS.gene57362:CDS |
| AGACTAGTGTCCATATGTGG+AGG | 0.614164 | 4.4:-40009869 | None:intergenic |
| TAGTGCATCTTCGGCAACAG+TGG | 0.615746 | 4.4:-40009473 | None:intergenic |
| TTCATCGGGAAAAGCTGCGT+CGG | 0.616861 | 4.4:-40009900 | None:intergenic |
| AACATGCTATCTGATCTAGC+AGG | 0.617693 | 4.4:-40010247 | None:intergenic |
| CAGAACAAAGATGAAACGCT+AGG | 0.618253 | 4.4:+40008783 | MS.gene57362:CDS |
| TGGAGCAGGGGCAGTCACAA+AGG | 0.622756 | 4.4:+40008017 | MS.gene57362:CDS |
| AGCAAAGGTGAGAAAGCCAA+GGG | 0.623606 | 4.4:+40008402 | MS.gene57362:CDS |
| CTGGATCCGATCTTTAGAGA+AGG | 0.623819 | 4.4:-40008235 | None:intergenic |
| AGTAGAATACATGCTTGATG+TGG | 0.623878 | 4.4:+40009601 | MS.gene57362:CDS |
| GTGTATGATTCCTTTGCAGA+TGG | 0.624945 | 4.4:+40008809 | MS.gene57362:CDS |
| GATCGATTAAGAAGCATCGG+AGG | 0.625201 | 4.4:+40009986 | MS.gene57362:CDS |
| AAAGGATTCTCGGATAGGGA+AGG | 0.627038 | 4.4:+40009289 | MS.gene57362:CDS |
| CAGTAGTGATCTTAGGCCAA+CGG | 0.632810 | 4.4:+40008995 | MS.gene57362:CDS |
| GTAGGGATTATAAGTGCACA+AGG | 0.633768 | 4.4:+40009056 | MS.gene57362:CDS |
| GACTAGTGTCCATATGTGGA+GGG | 0.635062 | 4.4:-40009868 | None:intergenic |
| TAGCAGATGACTTTGTAGGG+AGG | 0.635329 | 4.4:+40008298 | MS.gene57362:CDS |
| AAGGAGGTTAGACCATAAGC+CGG | 0.639791 | 4.4:+40008836 | MS.gene57362:CDS |
| ACATGGAGGAGACAAATCAA+AGG | 0.645399 | 4.4:+40009271 | MS.gene57362:CDS |
| GTGGAATGAACAATACACTT+GGG | 0.646697 | 4.4:+40009193 | MS.gene57362:CDS |
| GTGAAGCTTGGAAACTACAA+GGG | 0.649278 | 4.4:+40008159 | MS.gene57362:CDS |
| CGACACAAATTGTGTCGATG+AGG | 0.652303 | 4.4:+40009543 | MS.gene57362:CDS |
| TCTTCGAGCCTATACCATTG+TGG | 0.657055 | 4.4:-40008378 | None:intergenic |
| GATAACAACCATTTACATGG+AGG | 0.669437 | 4.4:+40009257 | MS.gene57362:CDS |
| TTGATGTGGATTCACATATG+TGG | 0.676798 | 4.4:+40009615 | MS.gene57362:CDS |
| GGAGCCAAAGGGCTATCTGG+TGG | 0.685901 | 4.4:-40008357 | None:intergenic |
| GAGTTGACTCGTCCAGCACG+TGG | 0.688670 | 4.4:-40008968 | None:intergenic |
| ATAAGCCGGTGAACACTAGG+TGG | 0.694077 | 4.4:+40008850 | MS.gene57362:CDS |
| ATAGCCCTTTGGCTCCACAA+TGG | 0.694840 | 4.4:+40008364 | MS.gene57362:CDS |
| AGAAGAAGTCAAATCCCCAG+TGG | 0.701980 | 4.4:+40008199 | MS.gene57362:CDS |
| TATAGGCTCGAAGATAGCAA+AGG | 0.706170 | 4.4:+40008387 | MS.gene57362:CDS |
| TCTCATTCGAACAATGTCCG+AGG | 0.706520 | 4.4:-40009960 | None:intergenic |
| TAGGGATTATAAGTGCACAA+GGG | 0.762835 | 4.4:+40009057 | MS.gene57362:CDS |
| GCGAAAACCTGATTCCACTG+GGG | 0.783494 | 4.4:-40008213 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAACCAATATTATGAAT+AGG | - | chr4.4:40009769-40009788 | None:intergenic | 20.0% |
| !! | AACATGTATAAGAAAATTGT+TGG | - | chr4.4:40009809-40009828 | None:intergenic | 20.0% |
| !! | TCATATCCTATTCATAATAT+TGG | + | chr4.4:40009760-40009779 | MS.gene57362:CDS | 20.0% |
| !!! | TTTCATTATTCTGAAGAAAT+TGG | - | chr4.4:40009660-40009679 | None:intergenic | 20.0% |
| ! | AACATAACCTTAAATGTATC+CGG | - | chr4.4:40008935-40008954 | None:intergenic | 25.0% |
| ! | ATTAGTAACACAACTTGAAA+AGG | - | chr4.4:40010148-40010167 | None:intergenic | 25.0% |
| ! | TGAAAACCATAAATCCTATA+TGG | + | chr4.4:40008685-40008704 | MS.gene57362:CDS | 25.0% |
| ! | TTCTTATACATGTTCATGAT+TGG | + | chr4.4:40009815-40009834 | MS.gene57362:CDS | 25.0% |
| !! | GATACATTTAAGGTTATGTT+TGG | + | chr4.4:40008935-40008954 | MS.gene57362:CDS | 25.0% |
| !! | TTTGATAACAACCATTTACA+TGG | + | chr4.4:40009254-40009273 | MS.gene57362:CDS | 25.0% |
| AACCTCCTAAAGAAATTAAG+AGG | - | chr4.4:40010226-40010245 | None:intergenic | 30.0% | |
| AAGAAATTAAGAGGAACTGA+TGG | - | chr4.4:40010217-40010236 | None:intergenic | 30.0% | |
| ACATGTTCATGATTGGAATA+TGG | + | chr4.4:40009822-40009841 | MS.gene57362:CDS | 30.0% | |
| ATCAAATCCTCATTCCATAT+AGG | - | chr4.4:40008702-40008721 | None:intergenic | 30.0% | |
| CAGTTCCTCTTAATTTCTTT+AGG | + | chr4.4:40010218-40010237 | MS.gene57362:CDS | 30.0% | |
| CATAAATCCTATATGGAATG+AGG | + | chr4.4:40008692-40008711 | MS.gene57362:CDS | 30.0% | |
| CTCATTCCATATAGGATTTA+TGG | - | chr4.4:40008694-40008713 | None:intergenic | 30.0% | |
| GGTTTGATCAAATTTGCAAT+TGG | + | chr4.4:40009711-40009730 | MS.gene57362:CDS | 30.0% | |
| TCTACTACTTCTTTCCTTAA+CGG | - | chr4.4:40009587-40009606 | None:intergenic | 30.0% | |
| TCTTCCACAGTTAAAACTAA+AGG | - | chr4.4:40008753-40008772 | None:intergenic | 30.0% | |
| TTATAGCAGATGACTTTGTA+GGG | + | chr4.4:40008295-40008314 | MS.gene57362:CDS | 30.0% | |
| TTCCTCTTAATTTCTTTAGG+AGG | + | chr4.4:40010221-40010240 | MS.gene57362:CDS | 30.0% | |
| TTGGAATATGGAACTTTAGA+TGG | + | chr4.4:40009834-40009853 | MS.gene57362:CDS | 30.0% | |
| ! | ATCTTTTGTAGGCAATTCTT+TGG | - | chr4.4:40008109-40008128 | None:intergenic | 30.0% |
| ! | CATTTAAGGTTATGTTTGGA+TGG | + | chr4.4:40008939-40008958 | MS.gene57362:CDS | 30.0% |
| ! | CTTTTAGTACTAAATCCATC+AGG | + | chr4.4:40009368-40009387 | MS.gene57362:CDS | 30.0% |
| ! | GATGGATTTAGTACTAAAAG+AGG | - | chr4.4:40009368-40009387 | None:intergenic | 30.0% |
| ! | GTATTGGTATTCTAGAAGTA+GGG | + | chr4.4:40009039-40009058 | MS.gene57362:CDS | 30.0% |
| !! | AGTATTGGTATTCTAGAAGT+AGG | + | chr4.4:40009038-40009057 | MS.gene57362:CDS | 30.0% |
| !! | ATTGTTGGAAGTATTAGTTC+AGG | - | chr4.4:40009794-40009813 | None:intergenic | 30.0% |
| !! | GGTTTCAAAGTCTTTTAAGT+TGG | + | chr4.4:40010053-40010072 | MS.gene57362:CDS | 30.0% |
| !! | TGAATTAGTATCGATGTGAT+CGG | - | chr4.4:40009743-40009762 | None:intergenic | 30.0% |
| !! | TTGTTGGAAGTATTAGTTCA+GGG | - | chr4.4:40009793-40009812 | None:intergenic | 30.0% |
| AAAACTAAAGGTTCCTCGAA+CGG | - | chr4.4:40008741-40008760 | None:intergenic | 35.0% | |
| AAATCAAAGGATTCTCGGAT+AGG | + | chr4.4:40009284-40009303 | MS.gene57362:CDS | 35.0% | |
| AATCAAAGGATTCTCGGATA+GGG | + | chr4.4:40009285-40009304 | MS.gene57362:CDS | 35.0% | |
| AGTAGAATACATGCTTGATG+TGG | + | chr4.4:40009601-40009620 | MS.gene57362:CDS | 35.0% | |
| AGTGGAATGAACAATACACT+TGG | + | chr4.4:40009192-40009211 | MS.gene57362:CDS | 35.0% | |
| ATGAAAACTAGAGATGGTAG+AGG | + | chr4.4:40009089-40009108 | MS.gene57362:CDS | 35.0% | |
| ATTTGTCTCCTCCATGTAAA+TGG | - | chr4.4:40009268-40009287 | None:intergenic | 35.0% | |
| CCATCTACTGTTATCACAAT+AGG | + | chr4.4:40009227-40009246 | MS.gene57362:CDS | 35.0% | |
| CCTATTGTGATAACAGTAGA+TGG | - | chr4.4:40009230-40009249 | None:intergenic | 35.0% | |
| GAAAACAGGAGAAGTTCAAT+TGG | + | chr4.4:40009397-40009416 | MS.gene57362:CDS | 35.0% | |
| GAATATGGAACTTTAGATGG+AGG | + | chr4.4:40009837-40009856 | MS.gene57362:CDS | 35.0% | |
| GAGACAAATCAAAGGATTCT+CGG | + | chr4.4:40009279-40009298 | MS.gene57362:CDS | 35.0% | |
| GATAACAACCATTTACATGG+AGG | + | chr4.4:40009257-40009276 | MS.gene57362:CDS | 35.0% | |
| GCTTATTGCGTAGCAAAATT+CGG | + | chr4.4:40009122-40009141 | MS.gene57362:CDS | 35.0% | |
| GTGGAATGAACAATACACTT+GGG | + | chr4.4:40009193-40009212 | MS.gene57362:CDS | 35.0% | |
| GTGTATTGTTCATTCCACTT+TGG | - | chr4.4:40009191-40009210 | None:intergenic | 35.0% | |
| GTTATAGCAGATGACTTTGT+AGG | + | chr4.4:40008294-40008313 | MS.gene57362:CDS | 35.0% | |
| TAAGGTTATGTTTGGATGGA+GGG | + | chr4.4:40008943-40008962 | MS.gene57362:CDS | 35.0% | |
| TAGGGATTATAAGTGCACAA+GGG | + | chr4.4:40009057-40009076 | MS.gene57362:CDS | 35.0% | |
| TCACAAAAACTTCAGGATAC+CGG | - | chr4.4:40008620-40008639 | None:intergenic | 35.0% | |
| TGACTTCTTCTCAAAATGCT+TGG | - | chr4.4:40008190-40008209 | None:intergenic | 35.0% | |
| TTAAGGTTATGTTTGGATGG+AGG | + | chr4.4:40008942-40008961 | MS.gene57362:CDS | 35.0% | |
| TTAATGCTTGCAGTTTGGAT+GGG | + | chr4.4:40008429-40008448 | MS.gene57362:CDS | 35.0% | |
| TTATCGAGTTTGATCGCTTT+CGG | + | chr4.4:40009683-40009702 | MS.gene57362:CDS | 35.0% | |
| TTGATGTGGATTCACATATG+TGG | + | chr4.4:40009615-40009634 | MS.gene57362:CDS | 35.0% | |
| ! | AAACTCTTCGTCTAGTTCAT+CGG | - | chr4.4:40009918-40009937 | None:intergenic | 35.0% |
| ! | CAAGTTGTGTTACTAATCAC+TGG | + | chr4.4:40010151-40010170 | MS.gene57362:CDS | 35.0% |
| ! | GGAAGTTTTTGTCTGAATCT+AGG | - | chr4.4:40010196-40010215 | None:intergenic | 35.0% |
| ! | GTATCCTGAAGTTTTTGTGA+AGG | + | chr4.4:40008620-40008639 | MS.gene57362:CDS | 35.0% |
| ! | TACGATCGATTAAGAAGCAT+CGG | + | chr4.4:40009983-40010002 | MS.gene57362:CDS | 35.0% |
| ! | TTTTTGTGAAGGTTGCTCTA+GGG | + | chr4.4:40008631-40008650 | MS.gene57362:CDS | 35.0% |
| !! | GAATTAGTATCGATGTGATC+GGG | - | chr4.4:40009742-40009761 | None:intergenic | 35.0% |
| !! | GCATAATCTTGAAAAGCACT+TGG | + | chr4.4:40008872-40008891 | MS.gene57362:CDS | 35.0% |
| !! | TTTAAGTTGGAGAGATCCAA+GGG | + | chr4.4:40010066-40010085 | MS.gene57362:CDS | 35.0% |
| !! | TTTTCGCCTTCTCTAAAGAT+CGG | + | chr4.4:40008229-40008248 | MS.gene57362:CDS | 35.0% |
| !!! | AGTTTTAACTGTGGAAGACA+GGG | + | chr4.4:40008755-40008774 | MS.gene57362:CDS | 35.0% |
| !!! | CTACCATCTCTAGTTTTCAT+CGG | - | chr4.4:40009089-40009108 | None:intergenic | 35.0% |
| !!! | GGAACCTTTAGTTTTAACTG+TGG | + | chr4.4:40008746-40008765 | MS.gene57362:CDS | 35.0% |
| !!! | TAGTTTTAACTGTGGAAGAC+AGG | + | chr4.4:40008754-40008773 | MS.gene57362:CDS | 35.0% |
| !!! | TTTTAAGTTGGAGAGATCCA+AGG | + | chr4.4:40010065-40010084 | MS.gene57362:CDS | 35.0% |
| AACATGCTATCTGATCTAGC+AGG | - | chr4.4:40010250-40010269 | None:intergenic | 40.0% | |
| ACATGGAGGAGACAAATCAA+AGG | + | chr4.4:40009271-40009290 | MS.gene57362:CDS | 40.0% | |
| ACTACTTCTTTCCTTAACGG+TGG | - | chr4.4:40009584-40009603 | None:intergenic | 40.0% | |
| AGGGCAAACTCATGAGAATT+TGG | - | chr4.4:40007976-40007995 | None:intergenic | 40.0% | |
| AGTGAAGCTTGGAAACTACA+AGG | + | chr4.4:40008158-40008177 | MS.gene57362:CDS | 40.0% | |
| ATAGGTGATCTTGCAACTCA+AGG | + | chr4.4:40010025-40010044 | MS.gene57362:CDS | 40.0% | |
| ATCTTGCAACTCAAGGAGAA+AGG | + | chr4.4:40010032-40010051 | MS.gene57362:CDS | 40.0% | |
| ATGCCGATGAAAACTAGAGA+TGG | + | chr4.4:40009083-40009102 | MS.gene57362:CDS | 40.0% | |
| CAGAACAAAGATGAAACGCT+AGG | + | chr4.4:40008783-40008802 | MS.gene57362:CDS | 40.0% | |
| CAGCTATGGAAGTCAAGTAT+TGG | + | chr4.4:40009023-40009042 | MS.gene57362:CDS | 40.0% | |
| CATTTGTTCGACTAGGTCAT+AGG | - | chr4.4:40008058-40008077 | None:intergenic | 40.0% | |
| CCAAGCTTCACTTCAACATA+GGG | - | chr4.4:40008150-40008169 | None:intergenic | 40.0% | |
| CTATCTGGTGGTATACGTTT+CGG | - | chr4.4:40008348-40008367 | None:intergenic | 40.0% | |
| CTCATCACAGTAGTGATCTT+AGG | + | chr4.4:40008988-40009007 | MS.gene57362:CDS | 40.0% | |
| GAGAAGTTCAATTGGCTGTA+AGG | + | chr4.4:40009405-40009424 | MS.gene57362:CDS | 40.0% | |
| GAGAGTTAATGCTTGCAGTT+TGG | + | chr4.4:40008424-40008443 | MS.gene57362:CDS | 40.0% | |
| GATAGACTAGTGTCCATATG+TGG | - | chr4.4:40009875-40009894 | None:intergenic | 40.0% | |
| GCAAACTCATGAGAATTTGG+TGG | - | chr4.4:40007973-40007992 | None:intergenic | 40.0% | |
| GCAACCTTCACAAAAACTTC+AGG | - | chr4.4:40008627-40008646 | None:intergenic | 40.0% | |
| GCACTACATTCATCCCTTAT+CGG | + | chr4.4:40009490-40009509 | MS.gene57362:CDS | 40.0% | |
| GGATAGGGAAGGTAAGAATT+AGG | + | chr4.4:40009300-40009319 | MS.gene57362:CDS | 40.0% | |
| GGATGAATGTAGTGCATCTT+CGG | - | chr4.4:40009485-40009504 | None:intergenic | 40.0% | |
| GGTATTGCATTTGTTCGACT+AGG | - | chr4.4:40008065-40008084 | None:intergenic | 40.0% | |
| GGTTGTCGAAGGTGAAAAAA+AGG | + | chr4.4:40008893-40008912 | MS.gene57362:CDS | 40.0% | |
| GTAGGGATTATAAGTGCACA+AGG | + | chr4.4:40009056-40009075 | MS.gene57362:CDS | 40.0% | |
| GTGAAGCTTGGAAACTACAA+GGG | + | chr4.4:40008159-40008178 | MS.gene57362:CDS | 40.0% | |
| GTGTATGATTCCTTTGCAGA+TGG | + | chr4.4:40008809-40008828 | MS.gene57362:CDS | 40.0% | |
| GTTAATGCTTGCAGTTTGGA+TGG | + | chr4.4:40008428-40008447 | MS.gene57362:CDS | 40.0% | |
| GTTTGATCGCTTTCGGAAAA+TGG | + | chr4.4:40009690-40009709 | MS.gene57362:CDS | 40.0% | |
| TAGCAAAATTCGGACAGAAG+TGG | + | chr4.4:40009132-40009151 | MS.gene57362:CDS | 40.0% | |
| TATACCATTGTGGAGCCAAA+GGG | - | chr4.4:40008371-40008390 | None:intergenic | 40.0% | |
| TATAGGCTCGAAGATAGCAA+AGG | + | chr4.4:40008387-40008406 | MS.gene57362:CDS | 40.0% | |
| TATCGACGATTGTCCTAGTT+CGG | - | chr4.4:40009160-40009179 | None:intergenic | 40.0% | |
| TCCAAGCTTCACTTCAACAT+AGG | - | chr4.4:40008151-40008170 | None:intergenic | 40.0% | |
| TGGTTCCAAGTGATAAAAGC+CGG | + | chr4.4:40008598-40008617 | MS.gene57362:CDS | 40.0% | |
| TTCTCATGAGTTTGCCCTTA+AGG | + | chr4.4:40007978-40007997 | MS.gene57362:CDS | 40.0% | |
| TTGCAAGCCGGATACATTTA+AGG | + | chr4.4:40008925-40008944 | MS.gene57362:CDS | 40.0% | |
| TTGCCTACAAAAGATGTCAC+TGG | + | chr4.4:40008114-40008133 | MS.gene57362:CDS | 40.0% | |
| TTTACTTGTCTCCCAAGCTT+TGG | + | chr4.4:40008541-40008560 | MS.gene57362:CDS | 40.0% | |
| ! | AACTCTTCGTCTAGTTCATC+GGG | - | chr4.4:40009917-40009936 | None:intergenic | 40.0% |
| ! | ATGAGGCATTTCCTGATTCT+TGG | + | chr4.4:40008463-40008482 | MS.gene57362:CDS | 40.0% |
| ! | ATGTATCCGGCTTGCAAATT+TGG | - | chr4.4:40008922-40008941 | None:intergenic | 40.0% |
| ! | CTACCAGTGACATCTTTTGT+AGG | - | chr4.4:40008120-40008139 | None:intergenic | 40.0% |
| ! | GGGAGAGTTCAAAGTGTTAT+AGG | + | chr4.4:40010007-40010026 | MS.gene57362:CDS | 40.0% |
| ! | GTTTTTGTGAAGGTTGCTCT+AGG | + | chr4.4:40008630-40008649 | MS.gene57362:CDS | 40.0% |
| !! | ATCGATTAAGAAGCATCGGA+GGG | + | chr4.4:40009987-40010006 | MS.gene57362:CDS | 40.0% |
| !! | TCGATAGCTTTAGTCCAAAG+TGG | + | chr4.4:40009174-40009193 | MS.gene57362:CDS | 40.0% |
| AAAGGATTCTCGGATAGGGA+AGG | + | chr4.4:40009289-40009308 | MS.gene57362:CDS | 45.0% | |
| AAGGAGGTTAGACCATAAGC+CGG | + | chr4.4:40008836-40008855 | MS.gene57362:CDS | 45.0% | |
| ACCCTGACATACCAAAGCTT+GGG | - | chr4.4:40008555-40008574 | None:intergenic | 45.0% | |
| AGAAGAAGTCAAATCCCCAG+TGG | + | chr4.4:40008199-40008218 | MS.gene57362:CDS | 45.0% | |
| AGACTAGTGTCCATATGTGG+AGG | - | chr4.4:40009872-40009891 | None:intergenic | 45.0% | |
| AGCAAAGGTGAGAAAGCCAA+GGG | + | chr4.4:40008402-40008421 | MS.gene57362:CDS | 45.0% | |
| AGCAGATGACTTTGTAGGGA+GGG | + | chr4.4:40008299-40008318 | MS.gene57362:CDS | 45.0% | |
| AGGACACCAAATTTGCAAGC+CGG | + | chr4.4:40008913-40008932 | MS.gene57362:CDS | 45.0% | |
| CAGTAGTGATCTTAGGCCAA+CGG | + | chr4.4:40008995-40009014 | MS.gene57362:CDS | 45.0% | |
| CATTCTGATGCAGCAATGGT+TGG | + | chr4.4:40008486-40008505 | MS.gene57362:CDS | 45.0% | |
| CCATCAGGTGTGAAGAAAAC+AGG | + | chr4.4:40009383-40009402 | MS.gene57362:CDS | 45.0% | |
| CCCTATGTTGAAGTGAAGCT+TGG | + | chr4.4:40008147-40008166 | MS.gene57362:CDS | 45.0% | |
| CTATACCATTGTGGAGCCAA+AGG | - | chr4.4:40008372-40008391 | None:intergenic | 45.0% | |
| CTTTGACGACACGAACATAG+AGG | - | chr4.4:40008086-40008105 | None:intergenic | 45.0% | |
| GACTAGTGTCCATATGTGGA+GGG | - | chr4.4:40009871-40009890 | None:intergenic | 45.0% | |
| GCATCAGAATGCCAAGAATC+AGG | - | chr4.4:40008477-40008496 | None:intergenic | 45.0% | |
| GGTCAATGTAATCGAAGCTC+AGG | + | chr4.4:40008572-40008591 | MS.gene57362:CDS | 45.0% | |
| TAGCAAAGGTGAGAAAGCCA+AGG | + | chr4.4:40008401-40008420 | MS.gene57362:CDS | 45.0% | |
| TAGCAGATGACTTTGTAGGG+AGG | + | chr4.4:40008298-40008317 | MS.gene57362:CDS | 45.0% | |
| TATACCACCAGATAGCCCTT+TGG | + | chr4.4:40008353-40008372 | MS.gene57362:CDS | 45.0% | |
| TCGAGCTGAATCACCGATAA+GGG | - | chr4.4:40009506-40009525 | None:intergenic | 45.0% | |
| TCTCATTCGAACAATGTCCG+AGG | - | chr4.4:40009963-40009982 | None:intergenic | 45.0% | |
| TCTTCGAGCCTATACCATTG+TGG | - | chr4.4:40008381-40008400 | None:intergenic | 45.0% | |
| TGATGCAGCAATGGTTGGAT+CGG | + | chr4.4:40008491-40008510 | MS.gene57362:CDS | 45.0% | |
| TGATTCAGCTCGACCATCTA+AGG | + | chr4.4:40009513-40009532 | MS.gene57362:CDS | 45.0% | |
| TGCAAGCATTAACTCTCCCT+TGG | - | chr4.4:40008421-40008440 | None:intergenic | 45.0% | |
| TGCTACGCAATAAGCATCTG+TGG | - | chr4.4:40009117-40009136 | None:intergenic | 45.0% | |
| TGTAATCGAAGCTCAGGACT+TGG | + | chr4.4:40008578-40008597 | MS.gene57362:CDS | 45.0% | |
| TTAACTGTGGAAGACAGGGT+TGG | + | chr4.4:40008759-40008778 | MS.gene57362:CDS | 45.0% | |
| TTATGCCACCTAGTGTTCAC+CGG | - | chr4.4:40008858-40008877 | None:intergenic | 45.0% | |
| TTCCTTTGCAGATGGTGCAA+AGG | + | chr4.4:40008817-40008836 | MS.gene57362:CDS | 45.0% | |
| TTGGCATTCTGATGCAGCAA+TGG | + | chr4.4:40008482-40008501 | MS.gene57362:CDS | 45.0% | |
| ! | CCTGTTTTCTTCACACCTGA+TGG | - | chr4.4:40009386-40009405 | None:intergenic | 45.0% |
| ! | CGACACAAATTGTGTCGATG+AGG | + | chr4.4:40009543-40009562 | MS.gene57362:CDS | 45.0% |
| ! | CTGGATCCGATCTTTAGAGA+AGG | - | chr4.4:40008238-40008257 | None:intergenic | 45.0% |
| ! | CTTCTCTAAAGATCGGATCC+AGG | + | chr4.4:40008236-40008255 | MS.gene57362:CDS | 45.0% |
| ! | CTTTGGCTCCACAATGGTAT+AGG | + | chr4.4:40008370-40008389 | MS.gene57362:CDS | 45.0% |
| ! | TCCCAAGCTTTGGTATGTCA+GGG | + | chr4.4:40008551-40008570 | MS.gene57362:CDS | 45.0% |
| !! | ACAAAAAGTGTCGTAGCCCT+TGG | - | chr4.4:40010085-40010104 | None:intergenic | 45.0% |
| !! | GAAAAGCACTTGGTTGTCGA+AGG | + | chr4.4:40008882-40008901 | MS.gene57362:CDS | 45.0% |
| !! | GATCGATTAAGAAGCATCGG+AGG | + | chr4.4:40009986-40010005 | MS.gene57362:CDS | 45.0% |
| !!! | GGATACCGGCTTTTATCACT+TGG | - | chr4.4:40008606-40008625 | None:intergenic | 45.0% |
| AAGGAGACAACGCCGAACAT+TGG | + | chr4.4:40007997-40008016 | MS.gene57362:CDS | 50.0% | |
| ACCATAAGCCGGTGAACACT+AGG | + | chr4.4:40008847-40008866 | MS.gene57362:CDS | 50.0% | |
| AGGCGAAAACCTGATTCCAC+TGG | - | chr4.4:40008218-40008237 | None:intergenic | 50.0% | |
| ATAAGCCGGTGAACACTAGG+TGG | + | chr4.4:40008850-40008869 | MS.gene57362:CDS | 50.0% | |
| ATGACTTTGTAGGGAGGGTG+TGG | + | chr4.4:40008304-40008323 | MS.gene57362:CDS | 50.0% | |
| ATGTCCGAGGATCGTGATGT+AGG | - | chr4.4:40009950-40009969 | None:intergenic | 50.0% | |
| CTCCTTTGCACCATCTGCAA+AGG | - | chr4.4:40008822-40008841 | None:intergenic | 50.0% | |
| CTTTGCAGATGGTGCAAAGG+AGG | + | chr4.4:40008820-40008839 | MS.gene57362:CDS | 50.0% | |
| GACAGAAGTGGATCCGAACT+AGG | + | chr4.4:40009144-40009163 | MS.gene57362:CDS | 50.0% | |
| GACCCTGACATACCAAAGCT+TGG | - | chr4.4:40008556-40008575 | None:intergenic | 50.0% | |
| GATGGGAACTCAAGCAGATG+AGG | + | chr4.4:40008446-40008465 | MS.gene57362:CDS | 50.0% | |
| GCGAAAACCTGATTCCACTG+GGG | - | chr4.4:40008216-40008235 | None:intergenic | 50.0% | |
| GGCGAAAACCTGATTCCACT+GGG | - | chr4.4:40008217-40008236 | None:intergenic | 50.0% | |
| GTCAAATCCCCAGTGGAATC+AGG | + | chr4.4:40008206-40008225 | MS.gene57362:CDS | 50.0% | |
| GTCGAGCTGAATCACCGATA+AGG | - | chr4.4:40009507-40009526 | None:intergenic | 50.0% | |
| GTTCCCTACATCACGATCCT+CGG | + | chr4.4:40009943-40009962 | MS.gene57362:CDS | 50.0% | |
| GTTCGGCGTTGTCTCCTTAA+GGG | - | chr4.4:40007995-40008014 | None:intergenic | 50.0% | |
| TAAAGGTTCCTCGAACGGCT+CGG | - | chr4.4:40008736-40008755 | None:intergenic | 50.0% | |
| TAGTGCATCTTCGGCAACAG+TGG | - | chr4.4:40009476-40009495 | None:intergenic | 50.0% | |
| TCACCTCCAAAACAGAAGCC+TGG | - | chr4.4:40008257-40008276 | None:intergenic | 50.0% | |
| TGTCCGAGGATCGTGATGTA+GGG | - | chr4.4:40009949-40009968 | None:intergenic | 50.0% | |
| TGTTCGGCGTTGTCTCCTTA+AGG | - | chr4.4:40007996-40008015 | None:intergenic | 50.0% | |
| TTCATCGGGAAAAGCTGCGT+CGG | - | chr4.4:40009903-40009922 | None:intergenic | 50.0% | |
| TTCGACTAGGTCATAGGTGC+AGG | - | chr4.4:40008052-40008071 | None:intergenic | 50.0% | |
| ! | ATAGCCCTTTGGCTCCACAA+TGG | + | chr4.4:40008364-40008383 | MS.gene57362:CDS | 50.0% |
| ! | CTCCCAAGCTTTGGTATGTC+AGG | + | chr4.4:40008550-40008569 | MS.gene57362:CDS | 50.0% |
| ! | TCGGATCCAGGCTTCTGTTT+TGG | + | chr4.4:40008248-40008267 | MS.gene57362:CDS | 50.0% |
| !! | ACCTAGTGTTCACCGGCTTA+TGG | - | chr4.4:40008851-40008870 | None:intergenic | 50.0% |
| !! | GATCCAGGCTTCTGTTTTGG+AGG | + | chr4.4:40008251-40008270 | MS.gene57362:CDS | 50.0% |
| !! | GTGTCGCTTGATGCCTTAGA+TGG | - | chr4.4:40009529-40009548 | None:intergenic | 50.0% |
| !! | TCCATATGTGGAGGGTGTCT+TGG | - | chr4.4:40009863-40009882 | None:intergenic | 50.0% |
| AACGCCGAACATTGGAGCAG+GGG | + | chr4.4:40008005-40008024 | MS.gene57362:CDS | 55.0% | |
| ACAACGCCGAACATTGGAGC+AGG | + | chr4.4:40008003-40008022 | MS.gene57362:CDS | 55.0% | |
| ACTGCCCCTGCTCCAATGTT+CGG | - | chr4.4:40008012-40008031 | None:intergenic | 55.0% | |
| CAACGCCGAACATTGGAGCA+GGG | + | chr4.4:40008004-40008023 | MS.gene57362:CDS | 55.0% | |
| CATCTTCGGCAACAGTGGCA+TGG | - | chr4.4:40009471-40009490 | None:intergenic | 55.0% | |
| GCCAAGACACCCTCCACATA+TGG | + | chr4.4:40009859-40009878 | MS.gene57362:CDS | 55.0% | |
| TCCTTAACGGTGGCTCAGCT+CGG | - | chr4.4:40009574-40009593 | None:intergenic | 55.0% | |
| TGTGGAGCCAAAGGGCTATC+TGG | - | chr4.4:40008363-40008382 | None:intergenic | 55.0% | |
| TTCCATAGCTGCTTCGCCGT+TGG | - | chr4.4:40009014-40009033 | None:intergenic | 55.0% | |
| GGAGCCAAAGGGCTATCTGG+TGG | - | chr4.4:40008360-40008379 | None:intergenic | 60.0% | |
| TGGAGCAGGGGCAGTCACAA+AGG | + | chr4.4:40008017-40008036 | MS.gene57362:CDS | 60.0% | |
| !! | GAGTTGACTCGTCCAGCACG+TGG | - | chr4.4:40008971-40008990 | None:intergenic | 60.0% |
| GCCGAGCTGAGCCACCGTTA+AGG | + | chr4.4:40009570-40009589 | MS.gene57362:CDS | 65.0% | |
| GGCCAACGGCGAAGCAGCTA+TGG | + | chr4.4:40009009-40009028 | MS.gene57362:CDS | 65.0% | |
| !! | GGATGGAGGGTACCACGTGC+TGG | + | chr4.4:40008956-40008975 | MS.gene57362:CDS | 65.0% |
| TGTCGCAGCCGAGCCGTTCG+AGG | + | chr4.4:40008725-40008744 | MS.gene57362:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 40007961 | 40010273 | 40007961 | ID=MS.gene57362 |
| chr4.4 | mRNA | 40007961 | 40010273 | 40007961 | ID=MS.gene57362.t1;Parent=MS.gene57362 |
| chr4.4 | exon | 40007961 | 40010273 | 40007961 | ID=MS.gene57362.t1.exon1;Parent=MS.gene57362.t1 |
| chr4.4 | CDS | 40007961 | 40010273 | 40007961 | ID=cds.MS.gene57362.t1;Parent=MS.gene57362.t1 |
| Gene Sequence |
| Protein sequence |
