AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54603

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54603.t1 MTR_4g066150 99.221 770 6 0 1 770 1 770 0.0 1590
MS.gene54603.t1 MTR_7g092770 81.596 777 134 7 1 770 1 775 0.0 1338
MS.gene54603.t1 MTR_0305s0020 82.194 775 132 4 1 770 1 774 0.0 1334
MS.gene54603.t1 MTR_5g010390 67.270 773 242 4 9 770 235 1007 0.0 1135
MS.gene54603.t1 MTR_3g027150 65.414 798 247 7 2 770 25 822 0.0 1120
MS.gene54603.t1 MTR_4g023460 66.836 787 239 8 6 770 356 1142 0.0 1107
MS.gene54603.t1 MTR_0291s0010 64.721 788 256 6 5 770 10 797 0.0 1095
MS.gene54603.t1 MTR_4g033215 64.653 778 266 6 1 770 268 1044 0.0 1055
MS.gene54603.t1 MTR_8g031270 60.129 775 292 7 9 770 233 1003 0.0 1001
MS.gene54603.t1 MTR_7g076900 59.745 785 287 7 9 770 235 1013 0.0 986
MS.gene54603.t1 MTR_4g057675 56.812 778 312 9 8 770 15 783 0.0 866
MS.gene54603.t1 MTR_4g071870 54.209 784 300 11 2 770 10 749 0.0 826
MS.gene54603.t1 MTR_4g107850 52.362 762 313 15 33 770 303 1038 0.0 786
MS.gene54603.t1 MTR_6g027540 50.329 761 334 14 31 770 272 1009 0.0 758
MS.gene54603.t1 MTR_6g028050 49.146 761 348 13 31 770 284 1026 0.0 745
MS.gene54603.t1 MTR_1g015540 48.214 784 373 13 7 770 3 773 0.0 699
MS.gene54603.t1 MTR_5g096980 40.077 781 425 12 9 770 7 763 0.0 586
MS.gene54603.t1 MTR_4g023250 64.615 130 44 1 640 769 1 128 8.90e-53 179
MS.gene54603.t1 MTR_4g023230 50.000 122 46 1 557 678 49 155 3.84e-32 122
MS.gene54603.t1 MTR_4g023390 48.077 104 32 2 643 746 16 97 1.03e-22 93.6
MS.gene54603.t1 MTR_4g023240 63.333 60 22 0 491 550 10 69 5.99e-19 82.0
MS.gene54603.t1 MTR_7g052280 50.633 79 13 4 248 324 1 55 4.29e-14 67.8
MS.gene54603.t1 MTR_2g027360 31.250 128 77 3 42 163 3 125 8.61e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54603.t1 AT3G57880 80.749 774 144 3 1 770 1 773 0.0 1342
MS.gene54603.t1 AT3G57880 80.749 774 144 3 1 770 1 773 0.0 1342
MS.gene54603.t1 AT3G57880 80.749 774 144 3 1 770 1 773 0.0 1342
MS.gene54603.t1 AT3G57880 80.749 774 144 3 1 770 1 773 0.0 1342
MS.gene54603.t1 AT5G12970 81.818 770 139 1 1 770 1 769 0.0 1318
MS.gene54603.t1 AT1G51570 78.636 777 158 5 1 770 1 776 0.0 1298
MS.gene54603.t1 AT4G11610 65.847 773 252 5 9 770 240 1011 0.0 1120
MS.gene54603.t1 AT4G11610 65.847 773 252 5 9 770 236 1007 0.0 1120
MS.gene54603.t1 AT4G11610 65.847 773 252 5 9 770 103 874 0.0 1119
MS.gene54603.t1 AT5G06850 65.649 786 249 6 6 770 9 794 0.0 1113
MS.gene54603.t1 AT5G48060 65.240 771 252 6 12 770 270 1036 0.0 1090
MS.gene54603.t1 AT1G22610 64.668 784 262 7 1 770 247 1029 0.0 1063
MS.gene54603.t1 AT4G00700 58.015 786 309 8 2 770 225 1006 0.0 957
MS.gene54603.t1 AT4G00700 58.015 786 309 8 2 770 225 1006 0.0 957
MS.gene54603.t1 AT1G04150 57.868 788 296 11 6 770 238 1012 0.0 927
MS.gene54603.t1 AT4G20080 58.182 770 303 11 10 770 15 774 0.0 920
MS.gene54603.t1 AT3G61300 56.016 773 316 12 5 770 217 972 0.0 914
MS.gene54603.t1 AT1G74720 50.501 798 353 16 2 770 297 1081 0.0 797
MS.gene54603.t1 AT3G03680 50.000 778 336 17 23 770 263 1017 0.0 759
MS.gene54603.t1 AT5G17980 49.735 754 347 14 31 770 314 1049 0.0 756
MS.gene54603.t1 AT3G61720 37.778 810 441 21 6 770 4 795 5.40e-165 497
MS.gene54603.t1 AT5G03435 40.233 773 410 23 6 763 4 739 6.58e-164 492
MS.gene54603.t1 AT5G03435 42.683 574 299 15 6 570 4 556 9.92e-139 421
MS.gene54603.t1 AT5G44760 49.875 399 155 9 8 399 4 364 6.38e-120 369
MS.gene54603.t1 AT5G44760 22.394 518 274 17 190 672 27 451 6.60e-20 94.4
MS.gene54603.t1 AT1G03370 32.787 122 78 2 42 161 3 122 1.16e-11 68.9
MS.gene54603.t1 AT1G03370 32.787 122 78 2 42 161 3 122 1.26e-11 68.9

Find 191 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTATCCTACTTGCAAATT+TGG 0.128416 4.3:+38004921 None:intergenic
CTCATTCCATATAGGATTTA+TGG 0.161420 4.3:+38005149 None:intergenic
TTTCATTATTCTGAAGAAAT+TGG 0.197860 4.3:+38004183 None:intergenic
TTGCAAGTAGGATACATTTA+AGG 0.226990 4.3:-38004915 MS.gene54603:CDS
GTTTGATGGCTTTCGGAAAA+TGG 0.230096 4.3:-38004150 MS.gene54603:CDS
TCATATCCTATTCATAATAT+TGG 0.235720 4.3:-38004080 MS.gene54603:CDS
AGGGCAAACTCATGAGAATT+TGG 0.271982 4.3:+38005867 None:intergenic
TTCTCATGAGTTTGCCCTTA+AGG 0.273893 4.3:-38005862 MS.gene54603:CDS
CAGTTCCTCTTAATTTCTTT+AGG 0.274083 4.3:-38003622 MS.gene54603:CDS
TCGGATCCAGGCTTCTGTTT+TGG 0.277864 4.3:-38005592 MS.gene54603:CDS
ACATGTTCATGATTGGAATA+TGG 0.280190 4.3:-38004018 MS.gene54603:CDS
ATGAGGCATTTCCTGATTCT+TGG 0.294072 4.3:-38005377 MS.gene54603:CDS
TTGGAATATGGAACTTTAGA+TGG 0.319453 4.3:-38004006 MS.gene54603:CDS
CTCCCAAGCTTTGGTATGTC+AGG 0.329807 4.3:-38005290 MS.gene54603:CDS
TGAAGACCATAAATCCTATA+TGG 0.331183 4.3:-38005155 MS.gene54603:CDS
TTCTTATACATGTTCATGAT+TGG 0.336283 4.3:-38004025 MS.gene54603:CDS
GATACATTTAAGGTTATGTT+TGG 0.339818 4.3:-38004905 MS.gene54603:CDS
ACCTAGTGTTCACCGGCTTA+TGG 0.344461 4.3:+38004992 None:intergenic
ATTGTTGGAAGTATTAGTTC+AGG 0.346883 4.3:+38004049 None:intergenic
GGATAGGGAAGGTAAGAATT+AGG 0.349936 4.3:-38004540 MS.gene54603:CDS
TTATCGAGTTTGATGGCTTT+CGG 0.351657 4.3:-38004157 MS.gene54603:CDS
TGTTCGGCGTTGTCTCCTTA+AGG 0.365819 4.3:+38005847 None:intergenic
TGTGGAGCCAAAGGGCTATC+TGG 0.367731 4.3:+38005480 None:intergenic
GGGAGAGTTCAAAGTGTTAT+AGG 0.375992 4.3:-38003833 MS.gene54603:CDS
CTTTGGCTCCACAATGGTAT+AGG 0.376988 4.3:-38005470 MS.gene54603:CDS
CCATCTACTGTTATCACAAT+AGG 0.380739 4.3:-38004613 MS.gene54603:CDS
GTTATAGCAGATGACTTTGT+AGG 0.383168 4.3:-38005546 MS.gene54603:CDS
TGATTCAGCTCGATCATCTA+AGG 0.384216 4.3:-38004327 MS.gene54603:CDS
GTCAAATCCCCAGTGGAATC+AGG 0.385686 4.3:-38005634 MS.gene54603:CDS
GCACTACATTCATCCCTTAT+CGG 0.387059 4.3:-38004350 MS.gene54603:CDS
GCTTATTGCGTAGCAAAATT+CGG 0.400530 4.3:-38004718 MS.gene54603:CDS
TCTACTACTTCTTTCCTTAA+CGG 0.401686 4.3:+38004256 None:intergenic
GCATCAGAATGCCAAGAATC+AGG 0.404599 4.3:+38005366 None:intergenic
AACATGTATAAGAAAATTGT+TGG 0.406603 4.3:+38004034 None:intergenic
GGTTTGATCAAATTTGCAAT+TGG 0.408748 4.3:-38004129 MS.gene54603:CDS
CCTATTGTGATAACAGTAGA+TGG 0.409352 4.3:+38004613 None:intergenic
TTTACTTGTCTCCCAAGCTT+TGG 0.414127 4.3:-38005299 MS.gene54603:CDS
AAAGAACCAATATTATGAAT+AGG 0.415882 4.3:+38004074 None:intergenic
CCATCAGGTGTGAAGAAAAC+AGG 0.419177 4.3:-38004457 MS.gene54603:CDS
AACTCTTCGTCTAGTTCATC+GGG 0.419737 4.3:+38003926 None:intergenic
GAGAGTTGATGCTTGCAGTT+TGG 0.419860 4.3:-38005416 MS.gene54603:CDS
CTATCTGGTGGTATACGTTT+CGG 0.421790 4.3:+38005495 None:intergenic
AAAACTAAAGGTTCCTCAAA+TGG 0.424899 4.3:+38005102 None:intergenic
TCCAAGCTTCACTTCAACAT+AGG 0.425674 4.3:+38005692 None:intergenic
GCATAATCTCGAGAAGCATT+TGG 0.428065 4.3:-38004968 MS.gene54603:CDS
GCCAAGACACCCTCCACATA+TGG 0.428256 4.3:-38003981 MS.gene54603:CDS
GTTCGGCGTTGTCTCCTTAA+GGG 0.430999 4.3:+38005848 None:intergenic
GGTTTCAAAGTCTTCTAAGT+TGG 0.432717 4.3:-38003787 MS.gene54603:CDS
GAAAACAGGAGAAGTTCAAT+TGG 0.436493 4.3:-38004443 MS.gene54603:CDS
TTCGACTAGGTCGTAGGTGC+AGG 0.441940 4.3:+38005791 None:intergenic
GAGAAGCATTTGGTTGTTGA+AGG 0.447113 4.3:-38004958 MS.gene54603:CDS
TCTTCCACGGTTAAAACTAA+AGG 0.447661 4.3:+38005090 None:intergenic
GAGAAGTTCAATTGGCTGTC+CGG 0.448965 4.3:-38004435 MS.gene54603:CDS
CAAGTTGTGTTACTAATCAC+TGG 0.449588 4.3:-38003689 MS.gene54603:CDS
CATTTAAGGTTATGTTTGGA+TGG 0.455868 4.3:-38004901 MS.gene54603:CDS
TCGAGCTGAATCACCGATAA+GGG 0.456809 4.3:+38004337 None:intergenic
ATGACTTTGTAGGGAGGGTG+TGG 0.457243 4.3:-38005536 MS.gene54603:CDS
TAAGGTTATGTTTGGATGGA+GGG 0.461239 4.3:-38004897 MS.gene54603:CDS
TGTCGCAGCCGAGCCATTTG+AGG 0.464409 4.3:-38005115 MS.gene54603:CDS
AGTATTGGTATTCTAGAAGT+AGG 0.464674 4.3:-38004802 MS.gene54603:CDS
TGACTTCTTCTCAAAATGCT+TGG 0.466042 4.3:+38005653 None:intergenic
TCTTTAGGAGGTTACCTGCT+AGG 0.467589 4.3:-38003607 MS.gene54603:CDS
ATTAGTAACACAACTTGAAA+AGG 0.467619 4.3:+38003695 None:intergenic
TTCCTCTTAATTTCTTTAGG+AGG 0.467658 4.3:-38003619 MS.gene54603:CDS
AACCTCCTAAAGAAATTAAG+AGG 0.471359 4.3:+38003617 None:intergenic
TTCCATAGCTGCTTCGCCGT+TGG 0.471657 4.3:+38004829 None:intergenic
CCAAGCTTCACTTCAACATA+GGG 0.471707 4.3:+38005693 None:intergenic
TATCAACGATTGTCCTAGTT+CGG 0.471964 4.3:+38004683 None:intergenic
ACTGCCCCTGCTCCAATGTT+CGG 0.472062 4.3:+38005831 None:intergenic
GGCCAACGGCGAAGCAGCTA+TGG 0.472843 4.3:-38004831 MS.gene54603:CDS
TCCATATGTGGAGGGTGTCT+TGG 0.475204 4.3:+38003980 None:intergenic
ATCGAGCTGAATCACCGATA+AGG 0.475343 4.3:+38004336 None:intergenic
CTCATCACAGTAGCGATCTT+AGG 0.475654 4.3:-38004852 MS.gene54603:CDS
ATCAAATCCTCATTCCATAT+AGG 0.477985 4.3:+38005141 None:intergenic
AAATCAAAGGATTCAAGGAT+AGG 0.478120 4.3:-38004556 MS.gene54603:CDS
GAGACAAATCAAAGGATTCA+AGG 0.481184 4.3:-38004561 MS.gene54603:CDS
GGAAGTTTCTGTCTGAATCT+AGG 0.482384 4.3:+38003647 None:intergenic
ATGTCCGAGGATCGTGATGT+AGG 0.482898 4.3:+38003893 None:intergenic
AAACTCTTCGTCTAGTTCAT+CGG 0.483861 4.3:+38003925 None:intergenic
ATGAAAACTAGAGATGGTAG+AGG 0.489090 4.3:-38004751 MS.gene54603:CDS
ACAACGCCGAACATTGGAGC+AGG 0.497199 4.3:-38005837 MS.gene54603:CDS
TTGTTGGAAGTATTAGTTCA+GGG 0.498579 4.3:+38004050 None:intergenic
GCCGAGCTGAGCCACCGTTA+AGG 0.498838 4.3:-38004270 MS.gene54603:CDS
AGGCGAAAACCTGATTCCAC+TGG 0.501075 4.3:+38005625 None:intergenic
TTTGATAACAATCATTTACA+TGG 0.501614 4.3:-38004586 MS.gene54603:CDS
CCCTATGTTGAAGTGAAGCT+TGG 0.501694 4.3:-38005693 MS.gene54603:CDS
GACCCTGACATACCAAAGCT+TGG 0.501973 4.3:+38005287 None:intergenic
ATCTTGCAACTCAAGGAGAA+AGG 0.507382 4.3:-38003808 MS.gene54603:CDS
GAATTAGTATCGATGTGATC+GGG 0.508160 4.3:+38004101 None:intergenic
TTAAGGTTATGTTTGGATGG+AGG 0.508953 4.3:-38004898 MS.gene54603:CDS
GGTCAATGTAATCGAAGCTC+AGG 0.509959 4.3:-38005268 MS.gene54603:CDS
TGTAATCGAAGCTCAGGACT+TGG 0.512090 4.3:-38005262 MS.gene54603:CDS
TGCAAGCATCAACTCTCCCT+TGG 0.513048 4.3:+38005422 None:intergenic
CATTCTGATGCAGCAATGGT+TGG 0.514711 4.3:-38005354 MS.gene54603:CDS
ACCCTGACATACCAAAGCTT+GGG 0.516304 4.3:+38005288 None:intergenic
TTATAGCAGATGACTTTGTA+GGG 0.520298 4.3:-38005545 MS.gene54603:CDS
GTGTATTGTTCATTCCACTT+TGG 0.520325 4.3:+38004652 None:intergenic
CTGTCCAACCCTGTCTTCCA+CGG 0.525250 4.3:+38005077 None:intergenic
TGTCCGAGGATCGTGATGTA+GGG 0.528130 4.3:+38003894 None:intergenic
TCCTTAACGGTGGCTCAGCT+CGG 0.530257 4.3:+38004269 None:intergenic
GTTGATGCTTGCAGTTTGGA+TGG 0.531402 4.3:-38005412 MS.gene54603:CDS
GGATGGAGGGTACCACGTGC+TGG 0.531458 4.3:-38004884 MS.gene54603:CDS
ACCATAAGCCGGTGAACACT+AGG 0.534500 4.3:-38004993 MS.gene54603:CDS
AAGAAATTAAGAGGAACTGA+TGG 0.534713 4.3:+38003626 None:intergenic
CAGCTATGGAAGTCAAGTAT+TGG 0.535757 4.3:-38004817 MS.gene54603:CDS
CTTCTCTAAAGATCGGATCC+AGG 0.535901 4.3:-38005604 MS.gene54603:CDS
AAGGAGACAACGCCGAACAT+TGG 0.538827 4.3:-38005843 MS.gene54603:CDS
CATAAATCCTATATGGAATG+AGG 0.539747 4.3:-38005148 MS.gene54603:CDS
GTATTGGTATTCTAGAAGTA+GGG 0.539882 4.3:-38004801 MS.gene54603:CDS
CTATACCATTGTGGAGCCAA+AGG 0.540343 4.3:+38005471 None:intergenic
GATGGATTTAGTACTAAAAG+AGG 0.542003 4.3:+38004475 None:intergenic
TCACCTCCAAAACAGAAGCC+TGG 0.542592 4.3:+38005586 None:intergenic
AGCAGATGACTTTGTAGGGA+GGG 0.543188 4.3:-38005541 MS.gene54603:CDS
AATCAAAGGATTCAAGGATA+GGG 0.545049 4.3:-38004555 MS.gene54603:CDS
AGTAAGATGAGTTTGTGAAC+CGG 0.551926 4.3:+38004416 None:intergenic
TGAATTAGTATCGATGTGAT+CGG 0.553091 4.3:+38004100 None:intergenic
TTGATAGCTTTAGTCCAAAG+TGG 0.553928 4.3:-38004666 MS.gene54603:CDS
TCCCAAGCTTTGGTATGTCA+GGG 0.559256 4.3:-38005289 MS.gene54603:CDS
TTGGCATTCTGATGCAGCAA+TGG 0.559991 4.3:-38005358 MS.gene54603:CDS
CGCCTTTGCACCATCTGCAA+AGG 0.561102 4.3:+38005021 None:intergenic
TACGATCGATTAAGAAGCAT+CGG 0.562424 4.3:-38003857 MS.gene54603:CDS
GACAGAAGTGGATCCGAACT+AGG 0.563556 4.3:-38004696 MS.gene54603:CDS
ATAGGTGATCTTGCAACTCA+AGG 0.563643 4.3:-38003815 MS.gene54603:CDS
CATTTGTTCGACTAGGTCGT+AGG 0.565414 4.3:+38005785 None:intergenic
GCAAACTCATGAGAATTTGG+TGG 0.569666 4.3:+38005870 None:intergenic
TTCTAAGTTGGAGAGATCCA+AGG 0.570334 4.3:-38003775 MS.gene54603:CDS
TATACCACCAGATAGCCCTT+TGG 0.574314 4.3:-38005487 MS.gene54603:CDS
GGCGAAAACCTGATTCCACT+GGG 0.574431 4.3:+38005626 None:intergenic
TAAAGGTTCCTCAAATGGCT+CGG 0.575679 4.3:+38005107 None:intergenic
GTTCCCTACATCACGATCCT+CGG 0.575947 4.3:-38003897 MS.gene54603:CDS
TTGGAGCAGGGGCAGTCACA+AGG 0.576593 4.3:-38005824 MS.gene54603:CDS
TGATGCAGCAATGGTTGGAT+CGG 0.576790 4.3:-38005349 MS.gene54603:CDS
TTATGCCACCTAGTGTTCAC+CGG 0.576945 4.3:+38004985 None:intergenic
TTGCCTACAAAAGATGTCAC+TGG 0.577219 4.3:-38005726 MS.gene54603:CDS
TATACCATTGTGGAGCCAAA+GGG 0.578790 4.3:+38005472 None:intergenic
AGGACACCAAATTTGCAAGT+AGG 0.580415 4.3:-38004927 MS.gene54603:CDS
GATAGTCTAGTGTCCATATG+TGG 0.580812 4.3:+38003968 None:intergenic
ATTTAGTACTAAAAGAGGAT+AGG 0.582002 4.3:+38004480 None:intergenic
GGTATTGCATTTGTTCGACT+AGG 0.583006 4.3:+38005778 None:intergenic
GATGGGAACTCAAGCAGATG+AGG 0.587116 4.3:-38005394 MS.gene54603:CDS
CGCAAAGGTGAGAAAGCCAA+GGG 0.589435 4.3:-38005438 MS.gene54603:CDS
AGTGAAGCTTGGAAACTACA+AGG 0.589926 4.3:-38005682 MS.gene54603:CDS
TAGCAAAATTCGGACAGAAG+TGG 0.592882 4.3:-38004708 MS.gene54603:CDS
TCGCAAAGGTGAGAAAGCCA+AGG 0.596308 4.3:-38005439 MS.gene54603:CDS
TGGTTCCAAGTGATAAAAGC+CGG 0.597256 4.3:-38005242 MS.gene54603:CDS
AACGCCGAACATTGGAGCAG+GGG 0.599485 4.3:-38005835 MS.gene54603:CDS
TTCCTTTGCAGATGGTGCAA+AGG 0.599676 4.3:-38005023 MS.gene54603:CDS
ATCGATTAAGAAGCATCGGA+GGG 0.601165 4.3:-38003853 MS.gene54603:CDS
CTTTGCAGATGGTGCAAAGG+CGG 0.603089 4.3:-38005020 MS.gene54603:CDS
ACTACTTCTTTCCTTAACGG+TGG 0.605059 4.3:+38004259 None:intergenic
AGTGGAATGAACAATACACT+TGG 0.605319 4.3:-38004648 MS.gene54603:CDS
CTTTGACGACACGAACGTAG+AGG 0.606450 4.3:+38005757 None:intergenic
TGCTACGCAATAAGCATCTG+TGG 0.606731 4.3:+38004726 None:intergenic
ATGCCGATGAAAACTAGAGA+TGG 0.607581 4.3:-38004757 MS.gene54603:CDS
CAACGCCGAACATTGGAGCA+GGG 0.608071 4.3:-38005836 MS.gene54603:CDS
GAATATGGAACTTTAGATGG+AGG 0.609696 4.3:-38004003 MS.gene54603:CDS
TTGATGCTTGCAGTTTGGAT+GGG 0.612217 4.3:-38005411 MS.gene54603:CDS
TTCATCGGGAAAAGCTGCGT+CGG 0.616861 4.3:+38003940 None:intergenic
AGTCTAGTGTCCATATGTGG+AGG 0.617490 4.3:+38003971 None:intergenic
CAGAACAAAGATGAAACGCT+AGG 0.618253 4.3:-38005057 MS.gene54603:CDS
CTGGATCCGATCTTTAGAGA+AGG 0.623819 4.3:+38005605 None:intergenic
AGTAGAATACATGCTTGATG+TGG 0.623878 4.3:-38004239 MS.gene54603:CDS
TTAACCGTGGAAGACAGGGT+TGG 0.624449 4.3:-38005081 MS.gene54603:CDS
AAAGGATTCAAGGATAGGGA+AGG 0.624742 4.3:-38004551 MS.gene54603:CDS
GTGTATGATTCCTTTGCAGA+TGG 0.624945 4.3:-38005031 MS.gene54603:CDS
GATCGATTAAGAAGCATCGG+AGG 0.625201 4.3:-38003854 MS.gene54603:CDS
GTCTAGTGTCCATATGTGGA+GGG 0.627627 4.3:+38003972 None:intergenic
TAGCAGATGACTTTGTAGGG+AGG 0.635329 4.3:-38005542 MS.gene54603:CDS
TCTAAGTTGGAGAGATCCAA+GGG 0.640235 4.3:-38003774 MS.gene54603:CDS
ACATGGAGGAGACAAATCAA+AGG 0.645399 4.3:-38004569 MS.gene54603:CDS
CAGTAGCGATCTTAGGCCAA+CGG 0.646139 4.3:-38004845 MS.gene54603:CDS
AAGGCGGTTAGACCATAAGC+CGG 0.646306 4.3:-38005004 MS.gene54603:CDS
GTGGAATGAACAATACACTT+GGG 0.646697 4.3:-38004647 MS.gene54603:CDS
GTGAAGCTTGGAAACTACAA+GGG 0.649278 4.3:-38005681 MS.gene54603:CDS
TGAAAACTAGAGATGGTAGA+GGG 0.649780 4.3:-38004750 MS.gene54603:CDS
AACATGCTATCTGACCTAGC+AGG 0.651278 4.3:+38003593 None:intergenic
CGACACAAATTGTGTCGATG+AGG 0.652303 4.3:-38004297 MS.gene54603:CDS
TGGAGCAGGGGCAGTCACAA+GGG 0.654414 4.3:-38005823 MS.gene54603:CDS
GTAGGGATTATAAGTGCACA+CGG 0.655466 4.3:-38004784 MS.gene54603:CDS
GATAACAATCATTTACATGG+AGG 0.657018 4.3:-38004583 MS.gene54603:CDS
TCTTCGAGCCTATACCATTG+TGG 0.666442 4.3:+38005462 None:intergenic
TTGATGTGGATTCACATATG+TGG 0.676798 4.3:-38004225 MS.gene54603:CDS
GGAGCCAAAGGGCTATCTGG+TGG 0.685901 4.3:+38005483 None:intergenic
GAGTTGACTCGTCCAGCACG+TGG 0.688670 4.3:+38004872 None:intergenic
ATAAGCCGGTGAACACTAGG+TGG 0.694077 4.3:-38004990 MS.gene54603:CDS
ATAGCCCTTTGGCTCCACAA+TGG 0.694840 4.3:-38005476 MS.gene54603:CDS
AGAAGAAGTCAAATCCCCAG+TGG 0.701980 4.3:-38005641 MS.gene54603:CDS
TCTCATTCGAACAATGTCCG+AGG 0.706520 4.3:+38003880 None:intergenic
TATAGGCTCGAAGATCGCAA+AGG 0.722679 4.3:-38005453 MS.gene54603:CDS
TAGGGATTATAAGTGCACAC+GGG 0.747797 4.3:-38004783 MS.gene54603:CDS
GCGAAAACCTGATTCCACTG+GGG 0.783494 4.3:+38005627 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAACCAATATTATGAAT+AGG + chr4.3:38005397-38005416 None:intergenic 20.0%
!! AACATGTATAAGAAAATTGT+TGG + chr4.3:38005437-38005456 None:intergenic 20.0%
!! TCATATCCTATTCATAATAT+TGG - chr4.3:38005388-38005407 MS.gene54603:CDS 20.0%
!!! TTTCATTATTCTGAAGAAAT+TGG + chr4.3:38005288-38005307 None:intergenic 20.0%
!!! TTTGATAACAATCATTTACA+TGG - chr4.3:38004882-38004901 MS.gene54603:CDS 20.0%
! ATTAGTAACACAACTTGAAA+AGG + chr4.3:38005776-38005795 None:intergenic 25.0%
! ATTTAGTACTAAAAGAGGAT+AGG + chr4.3:38004991-38005010 None:intergenic 25.0%
! TTCTTATACATGTTCATGAT+TGG - chr4.3:38005443-38005462 MS.gene54603:CDS 25.0%
!! GATACATTTAAGGTTATGTT+TGG - chr4.3:38004563-38004582 MS.gene54603:CDS 25.0%
AAAACTAAAGGTTCCTCAAA+TGG + chr4.3:38004369-38004388 None:intergenic 30.0%
AAATCAAAGGATTCAAGGAT+AGG - chr4.3:38004912-38004931 MS.gene54603:CDS 30.0%
AACCTCCTAAAGAAATTAAG+AGG + chr4.3:38005854-38005873 None:intergenic 30.0%
AAGAAATTAAGAGGAACTGA+TGG + chr4.3:38005845-38005864 None:intergenic 30.0%
AATCAAAGGATTCAAGGATA+GGG - chr4.3:38004913-38004932 MS.gene54603:CDS 30.0%
ACATGTTCATGATTGGAATA+TGG - chr4.3:38005450-38005469 MS.gene54603:CDS 30.0%
ATCAAATCCTCATTCCATAT+AGG + chr4.3:38004330-38004349 None:intergenic 30.0%
ATGTATCCTACTTGCAAATT+TGG + chr4.3:38004550-38004569 None:intergenic 30.0%
CAGTTCCTCTTAATTTCTTT+AGG - chr4.3:38005846-38005865 MS.gene54603:CDS 30.0%
CATAAATCCTATATGGAATG+AGG - chr4.3:38004320-38004339 MS.gene54603:CDS 30.0%
CTCATTCCATATAGGATTTA+TGG + chr4.3:38004322-38004341 None:intergenic 30.0%
GATAACAATCATTTACATGG+AGG - chr4.3:38004885-38004904 MS.gene54603:CDS 30.0%
GGTTTGATCAAATTTGCAAT+TGG - chr4.3:38005339-38005358 MS.gene54603:CDS 30.0%
TCTACTACTTCTTTCCTTAA+CGG + chr4.3:38005215-38005234 None:intergenic 30.0%
TGAAGACCATAAATCCTATA+TGG - chr4.3:38004313-38004332 MS.gene54603:CDS 30.0%
TTATAGCAGATGACTTTGTA+GGG - chr4.3:38003923-38003942 MS.gene54603:CDS 30.0%
TTCCTCTTAATTTCTTTAGG+AGG - chr4.3:38005849-38005868 MS.gene54603:CDS 30.0%
TTGCAAGTAGGATACATTTA+AGG - chr4.3:38004553-38004572 MS.gene54603:CDS 30.0%
TTGGAATATGGAACTTTAGA+TGG - chr4.3:38005462-38005481 MS.gene54603:CDS 30.0%
! ATCTTTTGTAGGCAATTCTT+TGG + chr4.3:38003737-38003756 None:intergenic 30.0%
! CATTTAAGGTTATGTTTGGA+TGG - chr4.3:38004567-38004586 MS.gene54603:CDS 30.0%
! CTTTTAGTACTAAATCCATC+AGG - chr4.3:38004996-38005015 MS.gene54603:CDS 30.0%
! GATGGATTTAGTACTAAAAG+AGG + chr4.3:38004996-38005015 None:intergenic 30.0%
! GTATTGGTATTCTAGAAGTA+GGG - chr4.3:38004667-38004686 MS.gene54603:CDS 30.0%
!! AGTATTGGTATTCTAGAAGT+AGG - chr4.3:38004666-38004685 MS.gene54603:CDS 30.0%
!! ATTGTTGGAAGTATTAGTTC+AGG + chr4.3:38005422-38005441 None:intergenic 30.0%
!! GAAAGTTTTATCGAGTTTGA+TGG - chr4.3:38005304-38005323 MS.gene54603:CDS 30.0%
!! TGAATTAGTATCGATGTGAT+CGG + chr4.3:38005371-38005390 None:intergenic 30.0%
!! TTGTTGGAAGTATTAGTTCA+GGG + chr4.3:38005421-38005440 None:intergenic 30.0%
AGTAAGATGAGTTTGTGAAC+CGG + chr4.3:38005055-38005074 None:intergenic 35.0%
AGTAGAATACATGCTTGATG+TGG - chr4.3:38005229-38005248 MS.gene54603:CDS 35.0%
AGTGGAATGAACAATACACT+TGG - chr4.3:38004820-38004839 MS.gene54603:CDS 35.0%
ATGAAAACTAGAGATGGTAG+AGG - chr4.3:38004717-38004736 MS.gene54603:CDS 35.0%
CCATCTACTGTTATCACAAT+AGG - chr4.3:38004855-38004874 MS.gene54603:CDS 35.0%
CCTATTGTGATAACAGTAGA+TGG + chr4.3:38004858-38004877 None:intergenic 35.0%
GAAAACAGGAGAAGTTCAAT+TGG - chr4.3:38005025-38005044 MS.gene54603:CDS 35.0%
GAATATGGAACTTTAGATGG+AGG - chr4.3:38005465-38005484 MS.gene54603:CDS 35.0%
GAGACAAATCAAAGGATTCA+AGG - chr4.3:38004907-38004926 MS.gene54603:CDS 35.0%
GCTTATTGCGTAGCAAAATT+CGG - chr4.3:38004750-38004769 MS.gene54603:CDS 35.0%
GGTTGTTGAAGGTGAAAAAA+AGG - chr4.3:38004521-38004540 MS.gene54603:CDS 35.0%
GGTTTCAAAGTCTTCTAAGT+TGG - chr4.3:38005681-38005700 MS.gene54603:CDS 35.0%
GTGGAATGAACAATACACTT+GGG - chr4.3:38004821-38004840 MS.gene54603:CDS 35.0%
GTGTATTGTTCATTCCACTT+TGG + chr4.3:38004819-38004838 None:intergenic 35.0%
GTTATAGCAGATGACTTTGT+AGG - chr4.3:38003922-38003941 MS.gene54603:CDS 35.0%
TAAGGTTATGTTTGGATGGA+GGG - chr4.3:38004571-38004590 MS.gene54603:CDS 35.0%
TATCAACGATTGTCCTAGTT+CGG + chr4.3:38004788-38004807 None:intergenic 35.0%
TCACAAAAACTTCTGGATAC+CGG + chr4.3:38004248-38004267 None:intergenic 35.0%
TCTTCCACGGTTAAAACTAA+AGG + chr4.3:38004381-38004400 None:intergenic 35.0%
TGAAAACTAGAGATGGTAGA+GGG - chr4.3:38004718-38004737 MS.gene54603:CDS 35.0%
TGACTTCTTCTCAAAATGCT+TGG + chr4.3:38003818-38003837 None:intergenic 35.0%
TTAAGGTTATGTTTGGATGG+AGG - chr4.3:38004570-38004589 MS.gene54603:CDS 35.0%
TTGATGTGGATTCACATATG+TGG - chr4.3:38005243-38005262 MS.gene54603:CDS 35.0%
! AAACTCTTCGTCTAGTTCAT+CGG + chr4.3:38005546-38005565 None:intergenic 35.0%
! CAAGTTGTGTTACTAATCAC+TGG - chr4.3:38005779-38005798 MS.gene54603:CDS 35.0%
! GGATGAATGTAGTGCATTTT+CGG + chr4.3:38005113-38005132 None:intergenic 35.0%
! GTATCCAGAAGTTTTTGTGA+AGG - chr4.3:38004248-38004267 MS.gene54603:CDS 35.0%
! TACGATCGATTAAGAAGCAT+CGG - chr4.3:38005611-38005630 MS.gene54603:CDS 35.0%
! TTATCGAGTTTGATGGCTTT+CGG - chr4.3:38005311-38005330 MS.gene54603:CDS 35.0%
! TTTTTGTGAAGGTTGCTCTA+GGG - chr4.3:38004259-38004278 MS.gene54603:CDS 35.0%
!! GAATTAGTATCGATGTGATC+GGG + chr4.3:38005370-38005389 None:intergenic 35.0%
!! TTGATAGCTTTAGTCCAAAG+TGG - chr4.3:38004802-38004821 MS.gene54603:CDS 35.0%
!! TTTTCGCCTTCTCTAAAGAT+CGG - chr4.3:38003857-38003876 MS.gene54603:CDS 35.0%
!!! CTACCATCTCTAGTTTTCAT+CGG + chr4.3:38004717-38004736 None:intergenic 35.0%
AAAGGATTCAAGGATAGGGA+AGG - chr4.3:38004917-38004936 MS.gene54603:CDS 40.0%
ACATGGAGGAGACAAATCAA+AGG - chr4.3:38004899-38004918 MS.gene54603:CDS 40.0%
ACTACTTCTTTCCTTAACGG+TGG + chr4.3:38005212-38005231 None:intergenic 40.0%
AGGACACCAAATTTGCAAGT+AGG - chr4.3:38004541-38004560 MS.gene54603:CDS 40.0%
AGGGCAAACTCATGAGAATT+TGG + chr4.3:38003604-38003623 None:intergenic 40.0%
AGTGAAGCTTGGAAACTACA+AGG - chr4.3:38003786-38003805 MS.gene54603:CDS 40.0%
ATAGGTGATCTTGCAACTCA+AGG - chr4.3:38005653-38005672 MS.gene54603:CDS 40.0%
ATCTTGCAACTCAAGGAGAA+AGG - chr4.3:38005660-38005679 MS.gene54603:CDS 40.0%
ATGCCGATGAAAACTAGAGA+TGG - chr4.3:38004711-38004730 MS.gene54603:CDS 40.0%
CAGAACAAAGATGAAACGCT+AGG - chr4.3:38004411-38004430 MS.gene54603:CDS 40.0%
CAGCTATGGAAGTCAAGTAT+TGG - chr4.3:38004651-38004670 MS.gene54603:CDS 40.0%
CCAAGCTTCACTTCAACATA+GGG + chr4.3:38003778-38003797 None:intergenic 40.0%
CTATCTGGTGGTATACGTTT+CGG + chr4.3:38003976-38003995 None:intergenic 40.0%
GATAGTCTAGTGTCCATATG+TGG + chr4.3:38005503-38005522 None:intergenic 40.0%
GCAAACTCATGAGAATTTGG+TGG + chr4.3:38003601-38003620 None:intergenic 40.0%
GCAACCTTCACAAAAACTTC+TGG + chr4.3:38004255-38004274 None:intergenic 40.0%
GCACTACATTCATCCCTTAT+CGG - chr4.3:38005118-38005137 MS.gene54603:CDS 40.0%
GGAAGTTTCTGTCTGAATCT+AGG + chr4.3:38005824-38005843 None:intergenic 40.0%
GGATAGGGAAGGTAAGAATT+AGG - chr4.3:38004928-38004947 MS.gene54603:CDS 40.0%
GGTATTGCATTTGTTCGACT+AGG + chr4.3:38003693-38003712 None:intergenic 40.0%
GTAGGGATTATAAGTGCACA+CGG - chr4.3:38004684-38004703 MS.gene54603:CDS 40.0%
GTGAAGCTTGGAAACTACAA+GGG - chr4.3:38003787-38003806 MS.gene54603:CDS 40.0%
GTGTATGATTCCTTTGCAGA+TGG - chr4.3:38004437-38004456 MS.gene54603:CDS 40.0%
TAAAGGTTCCTCAAATGGCT+CGG + chr4.3:38004364-38004383 None:intergenic 40.0%
TAGCAAAATTCGGACAGAAG+TGG - chr4.3:38004760-38004779 MS.gene54603:CDS 40.0%
TAGGGATTATAAGTGCACAC+GGG - chr4.3:38004685-38004704 MS.gene54603:CDS 40.0%
TATACCATTGTGGAGCCAAA+GGG + chr4.3:38003999-38004018 None:intergenic 40.0%
TCCAAGCTTCACTTCAACAT+AGG + chr4.3:38003779-38003798 None:intergenic 40.0%
TGATTCAGCTCGATCATCTA+AGG - chr4.3:38005141-38005160 MS.gene54603:CDS 40.0%
TGGTTCCAAGTGATAAAAGC+CGG - chr4.3:38004226-38004245 MS.gene54603:CDS 40.0%
TTCTCATGAGTTTGCCCTTA+AGG - chr4.3:38003606-38003625 MS.gene54603:CDS 40.0%
TTGATGCTTGCAGTTTGGAT+GGG - chr4.3:38004057-38004076 MS.gene54603:CDS 40.0%
TTGCCTACAAAAGATGTCAC+TGG - chr4.3:38003742-38003761 MS.gene54603:CDS 40.0%
TTTACTTGTCTCCCAAGCTT+TGG - chr4.3:38004169-38004188 MS.gene54603:CDS 40.0%
! AACTCTTCGTCTAGTTCATC+GGG + chr4.3:38005545-38005564 None:intergenic 40.0%
! ATGAGGCATTTCCTGATTCT+TGG - chr4.3:38004091-38004110 MS.gene54603:CDS 40.0%
! CTACCAGTGACATCTTTTGT+AGG + chr4.3:38003748-38003767 None:intergenic 40.0%
! GGGAGAGTTCAAAGTGTTAT+AGG - chr4.3:38005635-38005654 MS.gene54603:CDS 40.0%
! GTTTGATGGCTTTCGGAAAA+TGG - chr4.3:38005318-38005337 MS.gene54603:CDS 40.0%
! GTTTTTGTGAAGGTTGCTCT+AGG - chr4.3:38004258-38004277 MS.gene54603:CDS 40.0%
! TCTAAGTTGGAGAGATCCAA+GGG - chr4.3:38005694-38005713 MS.gene54603:CDS 40.0%
! TTCTAAGTTGGAGAGATCCA+AGG - chr4.3:38005693-38005712 MS.gene54603:CDS 40.0%
!! AGTTTTAACCGTGGAAGACA+GGG - chr4.3:38004383-38004402 MS.gene54603:CDS 40.0%
!! ATCGATTAAGAAGCATCGGA+GGG - chr4.3:38005615-38005634 MS.gene54603:CDS 40.0%
!! GAGAAGCATTTGGTTGTTGA+AGG - chr4.3:38004510-38004529 MS.gene54603:CDS 40.0%
!! GCATAATCTCGAGAAGCATT+TGG - chr4.3:38004500-38004519 MS.gene54603:CDS 40.0%
!!! GGAACCTTTAGTTTTAACCG+TGG - chr4.3:38004374-38004393 MS.gene54603:CDS 40.0%
!!! TAGTTTTAACCGTGGAAGAC+AGG - chr4.3:38004382-38004401 MS.gene54603:CDS 40.0%
AACATGCTATCTGACCTAGC+AGG + chr4.3:38005878-38005897 None:intergenic 45.0%
ACCCTGACATACCAAAGCTT+GGG + chr4.3:38004183-38004202 None:intergenic 45.0%
AGAAGAAGTCAAATCCCCAG+TGG - chr4.3:38003827-38003846 MS.gene54603:CDS 45.0%
AGCAGATGACTTTGTAGGGA+GGG - chr4.3:38003927-38003946 MS.gene54603:CDS 45.0%
AGTCTAGTGTCCATATGTGG+AGG + chr4.3:38005500-38005519 None:intergenic 45.0%
ATCGAGCTGAATCACCGATA+AGG + chr4.3:38005135-38005154 None:intergenic 45.0%
CATTCTGATGCAGCAATGGT+TGG - chr4.3:38004114-38004133 MS.gene54603:CDS 45.0%
CATTTGTTCGACTAGGTCGT+AGG + chr4.3:38003686-38003705 None:intergenic 45.0%
CCATCAGGTGTGAAGAAAAC+AGG - chr4.3:38005011-38005030 MS.gene54603:CDS 45.0%
CCCTATGTTGAAGTGAAGCT+TGG - chr4.3:38003775-38003794 MS.gene54603:CDS 45.0%
CTATACCATTGTGGAGCCAA+AGG + chr4.3:38004000-38004019 None:intergenic 45.0%
CTCATCACAGTAGCGATCTT+AGG - chr4.3:38004616-38004635 MS.gene54603:CDS 45.0%
GAGAAGTTCAATTGGCTGTC+CGG - chr4.3:38005033-38005052 MS.gene54603:CDS 45.0%
GCATCAGAATGCCAAGAATC+AGG + chr4.3:38004105-38004124 None:intergenic 45.0%
GGTCAATGTAATCGAAGCTC+AGG - chr4.3:38004200-38004219 MS.gene54603:CDS 45.0%
GTCTAGTGTCCATATGTGGA+GGG + chr4.3:38005499-38005518 None:intergenic 45.0%
GTTGATGCTTGCAGTTTGGA+TGG - chr4.3:38004056-38004075 MS.gene54603:CDS 45.0%
TAGCAGATGACTTTGTAGGG+AGG - chr4.3:38003926-38003945 MS.gene54603:CDS 45.0%
TATACCACCAGATAGCCCTT+TGG - chr4.3:38003981-38004000 MS.gene54603:CDS 45.0%
TATAGGCTCGAAGATCGCAA+AGG - chr4.3:38004015-38004034 MS.gene54603:CDS 45.0%
TCGAGCTGAATCACCGATAA+GGG + chr4.3:38005134-38005153 None:intergenic 45.0%
TCTCATTCGAACAATGTCCG+AGG + chr4.3:38005591-38005610 None:intergenic 45.0%
TCTTCGAGCCTATACCATTG+TGG + chr4.3:38004009-38004028 None:intergenic 45.0%
TGATGCAGCAATGGTTGGAT+CGG - chr4.3:38004119-38004138 MS.gene54603:CDS 45.0%
TGCTACGCAATAAGCATCTG+TGG + chr4.3:38004745-38004764 None:intergenic 45.0%
TGTAATCGAAGCTCAGGACT+TGG - chr4.3:38004206-38004225 MS.gene54603:CDS 45.0%
TTATGCCACCTAGTGTTCAC+CGG + chr4.3:38004486-38004505 None:intergenic 45.0%
TTCCTTTGCAGATGGTGCAA+AGG - chr4.3:38004445-38004464 MS.gene54603:CDS 45.0%
TTGGCATTCTGATGCAGCAA+TGG - chr4.3:38004110-38004129 MS.gene54603:CDS 45.0%
! CCTGTTTTCTTCACACCTGA+TGG + chr4.3:38005014-38005033 None:intergenic 45.0%
! CGACACAAATTGTGTCGATG+AGG - chr4.3:38005171-38005190 MS.gene54603:CDS 45.0%
! CTGGATCCGATCTTTAGAGA+AGG + chr4.3:38003866-38003885 None:intergenic 45.0%
! CTTCTCTAAAGATCGGATCC+AGG - chr4.3:38003864-38003883 MS.gene54603:CDS 45.0%
! CTTTGGCTCCACAATGGTAT+AGG - chr4.3:38003998-38004017 MS.gene54603:CDS 45.0%
! TCCCAAGCTTTGGTATGTCA+GGG - chr4.3:38004179-38004198 MS.gene54603:CDS 45.0%
! TCTTTAGGAGGTTACCTGCT+AGG - chr4.3:38005861-38005880 MS.gene54603:CDS 45.0%
!! ACAAAAAGTGTCGTAGCCCT+TGG + chr4.3:38005713-38005732 None:intergenic 45.0%
!! GAGAGTTGATGCTTGCAGTT+TGG - chr4.3:38004052-38004071 MS.gene54603:CDS 45.0%
!! GATCGATTAAGAAGCATCGG+AGG - chr4.3:38005614-38005633 MS.gene54603:CDS 45.0%
!!! GGATACCGGCTTTTATCACT+TGG + chr4.3:38004234-38004253 None:intergenic 45.0%
AAGGAGACAACGCCGAACAT+TGG - chr4.3:38003625-38003644 MS.gene54603:CDS 50.0%
AAGGCGGTTAGACCATAAGC+CGG - chr4.3:38004464-38004483 MS.gene54603:CDS 50.0%
ACCATAAGCCGGTGAACACT+AGG - chr4.3:38004475-38004494 MS.gene54603:CDS 50.0%
AGGCGAAAACCTGATTCCAC+TGG + chr4.3:38003846-38003865 None:intergenic 50.0%
ATAAGCCGGTGAACACTAGG+TGG - chr4.3:38004478-38004497 MS.gene54603:CDS 50.0%
ATGACTTTGTAGGGAGGGTG+TGG - chr4.3:38003932-38003951 MS.gene54603:CDS 50.0%
ATGTCCGAGGATCGTGATGT+AGG + chr4.3:38005578-38005597 None:intergenic 50.0%
CAGTAGCGATCTTAGGCCAA+CGG - chr4.3:38004623-38004642 MS.gene54603:CDS 50.0%
CGCAAAGGTGAGAAAGCCAA+GGG - chr4.3:38004030-38004049 MS.gene54603:CDS 50.0%
CTTTGACGACACGAACGTAG+AGG + chr4.3:38003714-38003733 None:intergenic 50.0%
CTTTGCAGATGGTGCAAAGG+CGG - chr4.3:38004448-38004467 MS.gene54603:CDS 50.0%
GACAGAAGTGGATCCGAACT+AGG - chr4.3:38004772-38004791 MS.gene54603:CDS 50.0%
GACCCTGACATACCAAAGCT+TGG + chr4.3:38004184-38004203 None:intergenic 50.0%
GATGGGAACTCAAGCAGATG+AGG - chr4.3:38004074-38004093 MS.gene54603:CDS 50.0%
GCGAAAACCTGATTCCACTG+GGG + chr4.3:38003844-38003863 None:intergenic 50.0%
GGCGAAAACCTGATTCCACT+GGG + chr4.3:38003845-38003864 None:intergenic 50.0%
GTCAAATCCCCAGTGGAATC+AGG - chr4.3:38003834-38003853 MS.gene54603:CDS 50.0%
GTTCCCTACATCACGATCCT+CGG - chr4.3:38005571-38005590 MS.gene54603:CDS 50.0%
GTTCGGCGTTGTCTCCTTAA+GGG + chr4.3:38003623-38003642 None:intergenic 50.0%
TCACCTCCAAAACAGAAGCC+TGG + chr4.3:38003885-38003904 None:intergenic 50.0%
TCGCAAAGGTGAGAAAGCCA+AGG - chr4.3:38004029-38004048 MS.gene54603:CDS 50.0%
TGCAAGCATCAACTCTCCCT+TGG + chr4.3:38004049-38004068 None:intergenic 50.0%
TGTCCGAGGATCGTGATGTA+GGG + chr4.3:38005577-38005596 None:intergenic 50.0%
TGTTCGGCGTTGTCTCCTTA+AGG + chr4.3:38003624-38003643 None:intergenic 50.0%
TTAACCGTGGAAGACAGGGT+TGG - chr4.3:38004387-38004406 MS.gene54603:CDS 50.0%
TTCATCGGGAAAAGCTGCGT+CGG + chr4.3:38005531-38005550 None:intergenic 50.0%
! ATAGCCCTTTGGCTCCACAA+TGG - chr4.3:38003992-38004011 MS.gene54603:CDS 50.0%
! CTCCCAAGCTTTGGTATGTC+AGG - chr4.3:38004178-38004197 MS.gene54603:CDS 50.0%
! TAGTGCATTTTCGGCAGCAG+CGG + chr4.3:38005104-38005123 None:intergenic 50.0%
! TCGGATCCAGGCTTCTGTTT+TGG - chr4.3:38003876-38003895 MS.gene54603:CDS 50.0%
!! ACCTAGTGTTCACCGGCTTA+TGG + chr4.3:38004479-38004498 None:intergenic 50.0%
!! GATCCAGGCTTCTGTTTTGG+AGG - chr4.3:38003879-38003898 MS.gene54603:CDS 50.0%
!! TCCATATGTGGAGGGTGTCT+TGG + chr4.3:38005491-38005510 None:intergenic 50.0%
AACGCCGAACATTGGAGCAG+GGG - chr4.3:38003633-38003652 MS.gene54603:CDS 55.0%
ACAACGCCGAACATTGGAGC+AGG - chr4.3:38003631-38003650 MS.gene54603:CDS 55.0%
ACTGCCCCTGCTCCAATGTT+CGG + chr4.3:38003640-38003659 None:intergenic 55.0%
CAACGCCGAACATTGGAGCA+GGG - chr4.3:38003632-38003651 MS.gene54603:CDS 55.0%
CGCCTTTGCACCATCTGCAA+AGG + chr4.3:38004450-38004469 None:intergenic 55.0%
CTGTCCAACCCTGTCTTCCA+CGG + chr4.3:38004394-38004413 None:intergenic 55.0%
GCCAAGACACCCTCCACATA+TGG - chr4.3:38005487-38005506 MS.gene54603:CDS 55.0%
TCCTTAACGGTGGCTCAGCT+CGG + chr4.3:38005202-38005221 None:intergenic 55.0%
TGTGGAGCCAAAGGGCTATC+TGG + chr4.3:38003991-38004010 None:intergenic 55.0%
TTCCATAGCTGCTTCGCCGT+TGG + chr4.3:38004642-38004661 None:intergenic 55.0%
TTCGACTAGGTCGTAGGTGC+AGG + chr4.3:38003680-38003699 None:intergenic 55.0%
GGAGCCAAAGGGCTATCTGG+TGG + chr4.3:38003988-38004007 None:intergenic 60.0%
TGGAGCAGGGGCAGTCACAA+GGG - chr4.3:38003645-38003664 MS.gene54603:CDS 60.0%
TGTCGCAGCCGAGCCATTTG+AGG - chr4.3:38004353-38004372 MS.gene54603:CDS 60.0%
TTGGAGCAGGGGCAGTCACA+AGG - chr4.3:38003644-38003663 MS.gene54603:CDS 60.0%
! CATTTTCGGCAGCAGCGGCA+TGG + chr4.3:38005099-38005118 None:intergenic 60.0%
!! GAGTTGACTCGTCCAGCACG+TGG + chr4.3:38004599-38004618 None:intergenic 60.0%
GCCGAGCTGAGCCACCGTTA+AGG - chr4.3:38005198-38005217 MS.gene54603:CDS 65.0%
GGCCAACGGCGAAGCAGCTA+TGG - chr4.3:38004637-38004656 MS.gene54603:CDS 65.0%
!! GGATGGAGGGTACCACGTGC+TGG - chr4.3:38004584-38004603 MS.gene54603:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 38003589 38005901 38003589 ID=MS.gene54603
chr4.3 mRNA 38003589 38005901 38003589 ID=MS.gene54603.t1;Parent=MS.gene54603
chr4.3 exon 38003589 38005901 38003589 ID=MS.gene54603.t1.exon1;Parent=MS.gene54603.t1
chr4.3 CDS 38003589 38005901 38003589 ID=cds.MS.gene54603.t1;Parent=MS.gene54603.t1
Gene Sequence

>MS.gene54603

ATGCAGAAGCCACCAAATTCTCATGAGTTTGCCCTTAAGGAGACAACGCCGAACATTGGAGCAGGGGCAGTCACAAGGGACAAGCTATCCTGCACCTACGACCTAGTCGAACAAATGCAATACCTCTACGTTCGTGTCGTCAAAGCCAAAGAATTGCCTACAAAAGATGTCACTGGTAGTCTTGATCCCTATGTTGAAGTGAAGCTTGGAAACTACAAGGGAATTACCAAGCATTTTGAGAAGAAGTCAAATCCCCAGTGGAATCAGGTTTTCGCCTTCTCTAAAGATCGGATCCAGGCTTCTGTTTTGGAGGTGATTGTCAAAGATAAAGATGTTATAGCAGATGACTTTGTAGGGAGGGTGTGGTTTGATCTGAATGATATACCGAAACGTATACCACCAGATAGCCCTTTGGCTCCACAATGGTATAGGCTCGAAGATCGCAAAGGTGAGAAAGCCAAGGGAGAGTTGATGCTTGCAGTTTGGATGGGAACTCAAGCAGATGAGGCATTTCCTGATTCTTGGCATTCTGATGCAGCAATGGTTGGATCGGAAGCAGTTGCAAATATAAGATCAAAAGTTTACTTGTCTCCCAAGCTTTGGTATGTCAGGGTCAATGTAATCGAAGCTCAGGACTTGGTTCCAAGTGATAAAAGCCGGTATCCAGAAGTTTTTGTGAAGGTTGCTCTAGGGAATCAGTTTTCAAGAACTAGAATATCTCAACTGAAGACCATAAATCCTATATGGAATGAGGATTTGATGTTTGTCGCAGCCGAGCCATTTGAGGAACCTTTAGTTTTAACCGTGGAAGACAGGGTTGGACAGAACAAAGATGAAACGCTAGGAAAGTGTATGATTCCTTTGCAGATGGTGCAAAGGCGGTTAGACCATAAGCCGGTGAACACTAGGTGGCATAATCTCGAGAAGCATTTGGTTGTTGAAGGTGAAAAAAAGGACACCAAATTTGCAAGTAGGATACATTTAAGGTTATGTTTGGATGGAGGGTACCACGTGCTGGACGAGTCAACTCATCACAGTAGCGATCTTAGGCCAACGGCGAAGCAGCTATGGAAGTCAAGTATTGGTATTCTAGAAGTAGGGATTATAAGTGCACACGGGTTGATGCCGATGAAAACTAGAGATGGTAGAGGGACCACAGATGCTTATTGCGTAGCAAAATTCGGACAGAAGTGGATCCGAACTAGGACAATCGTTGATAGCTTTAGTCCAAAGTGGAATGAACAATACACTTGGGAAGTATTTGATCCATCTACTGTTATCACAATAGGTGTCTTTGATAACAATCATTTACATGGAGGAGACAAATCAAAGGATTCAAGGATAGGGAAGGTAAGAATTAGGTTATCGACTCTTGAAACTGATAGAGTTTACACACATTCCTATCCTCTTTTAGTACTAAATCCATCAGGTGTGAAGAAAACAGGAGAAGTTCAATTGGCTGTCCGGTTCACAAACTCATCTTACTTCAACATGTTGTATATGTATTCCATGCCGCTGCTGCCGAAAATGCACTACATTCATCCCTTATCGGTGATTCAGCTCGATCATCTAAGGCATCAAGCGACACAAATTGTGTCGATGAGGCTGAGCCGAGCTGAGCCACCGTTAAGGAAAGAAGTAGTAGAATACATGCTTGATGTGGATTCACATATGTGGAGTATGAGAAGAAGCAAAGCCAATTTCTTCAGAATAATGAAAGTTTTATCGAGTTTGATGGCTTTCGGAAAATGGTTTGATCAAATTTGCAATTGGAAAAACCCGATCACATCGATACTAATTCATATCCTATTCATAATATTGGTTCTTTACCCTGAACTAATACTTCCAACAATTTTCTTATACATGTTCATGATTGGAATATGGAACTTTAGATGGAGGCCAAGACACCCTCCACATATGGACACTAGACTATCTCATGCCGACGCAGCTTTTCCCGATGAACTAGACGAAGAGTTTGATTCGTTCCCTACATCACGATCCTCGGACATTGTTCGAATGAGATACGATCGATTAAGAAGCATCGGAGGGAGAGTTCAAAGTGTTATAGGTGATCTTGCAACTCAAGGAGAAAGGTTTCAAAGTCTTCTAAGTTGGAGAGATCCAAGGGCTACGACACTTTTTGTGACATTCTGTTTTGTTGCTGCTATGATTCTTTATGTTACTCCTTTTCAAGTTGTGTTACTAATCACTGGATTTTATGTTCTGAGACATCCTAGATTCAGACAGAAACTTCCATCAGTTCCTCTTAATTTCTTTAGGAGGTTACCTGCTAGGTCAGATAGCATGTTATAG
Protein sequence

>MS.gene54603.t1

MQKPPNSHEFALKETTPNIGAGAVTRDKLSCTYDLVEQMQYLYVRVVKAKELPTKDVTGSLDPYVEVKLGNYKGITKHFEKKSNPQWNQVFAFSKDRIQASVLEVIVKDKDVIADDFVGRVWFDLNDIPKRIPPDSPLAPQWYRLEDRKGEKAKGELMLAVWMGTQADEAFPDSWHSDAAMVGSEAVANIRSKVYLSPKLWYVRVNVIEAQDLVPSDKSRYPEVFVKVALGNQFSRTRISQLKTINPIWNEDLMFVAAEPFEEPLVLTVEDRVGQNKDETLGKCMIPLQMVQRRLDHKPVNTRWHNLEKHLVVEGEKKDTKFASRIHLRLCLDGGYHVLDESTHHSSDLRPTAKQLWKSSIGILEVGIISAHGLMPMKTRDGRGTTDAYCVAKFGQKWIRTRTIVDSFSPKWNEQYTWEVFDPSTVITIGVFDNNHLHGGDKSKDSRIGKVRIRLSTLETDRVYTHSYPLLVLNPSGVKKTGEVQLAVRFTNSSYFNMLYMYSMPLLPKMHYIHPLSVIQLDHLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMKVLSSLMAFGKWFDQICNWKNPITSILIHILFIILVLYPELILPTIFLYMFMIGIWNFRWRPRHPPHMDTRLSHADAAFPDELDEEFDSFPTSRSSDIVRMRYDRLRSIGGRVQSVIGDLATQGERFQSLLSWRDPRATTLFVTFCFVAAMILYVTPFQVVLLITGFYVLRHPRFRQKLPSVPLNFFRRLPARSDSML