Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90013.t1 | XP_013442140.1 | 99.5 | 797 | 4 | 0 | 1 | 797 | 1 | 797 | 0.00E+00 | 1624 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90013.t1 | Q9FL59 | 81.1 | 785 | 147 | 1 | 13 | 797 | 11 | 794 | 0.0e+00 | 1351.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90013.t1 | A0A072TRG9 | 99.5 | 797 | 4 | 0 | 1 | 797 | 1 | 797 | 0.0e+00 | 1624.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90013 | MS.gene072379 | PPI |
| MS.gene90013 | MS.gene003921 | PPI |
| MS.gene90013 | MS.gene90010 | PPI |
| MS.gene90013 | MS.gene97685 | PPI |
| MS.gene90013 | MS.gene54603 | PPI |
| MS.gene90013 | MS.gene84943 | PPI |
| MS.gene90013 | MS.gene04595 | PPI |
| MS.gene90013 | MS.gene018791 | PPI |
| MS.gene90013 | MS.gene056344 | PPI |
| MS.gene90013 | MS.gene57362 | PPI |
| MS.gene90013 | MS.gene056972 | PPI |
| MS.gene90013 | MS.gene017959 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90013.t1 | MTR_0291s0010 | 99.498 | 797 | 4 | 0 | 1 | 797 | 1 | 797 | 0.0 | 1648 |
| MS.gene90013.t1 | MTR_3g027150 | 71.950 | 795 | 216 | 3 | 10 | 797 | 28 | 822 | 0.0 | 1247 |
| MS.gene90013.t1 | MTR_4g023460 | 72.243 | 789 | 215 | 3 | 11 | 797 | 356 | 1142 | 0.0 | 1239 |
| MS.gene90013.t1 | MTR_7g092770 | 67.468 | 790 | 239 | 6 | 9 | 797 | 3 | 775 | 0.0 | 1149 |
| MS.gene90013.t1 | MTR_0305s0020 | 67.215 | 790 | 240 | 8 | 9 | 797 | 3 | 774 | 0.0 | 1120 |
| MS.gene90013.t1 | MTR_4g066150 | 65.355 | 788 | 251 | 6 | 10 | 797 | 5 | 770 | 0.0 | 1080 |
| MS.gene90013.t1 | MTR_5g010390 | 62.389 | 787 | 279 | 6 | 14 | 797 | 235 | 1007 | 0.0 | 1058 |
| MS.gene90013.t1 | MTR_4g033215 | 59.671 | 791 | 301 | 5 | 8 | 797 | 271 | 1044 | 0.0 | 992 |
| MS.gene90013.t1 | MTR_8g031270 | 57.034 | 789 | 316 | 8 | 14 | 797 | 233 | 1003 | 0.0 | 954 |
| MS.gene90013.t1 | MTR_7g076900 | 57.215 | 797 | 310 | 9 | 14 | 797 | 235 | 1013 | 0.0 | 938 |
| MS.gene90013.t1 | MTR_4g057675 | 51.010 | 792 | 358 | 10 | 13 | 797 | 15 | 783 | 0.0 | 776 |
| MS.gene90013.t1 | MTR_4g107850 | 50.914 | 766 | 329 | 15 | 49 | 797 | 303 | 1038 | 0.0 | 756 |
| MS.gene90013.t1 | MTR_6g027540 | 49.153 | 767 | 341 | 14 | 49 | 797 | 274 | 1009 | 0.0 | 743 |
| MS.gene90013.t1 | MTR_4g071870 | 48.990 | 792 | 340 | 12 | 13 | 797 | 15 | 749 | 0.0 | 739 |
| MS.gene90013.t1 | MTR_6g028050 | 47.513 | 764 | 367 | 12 | 47 | 797 | 284 | 1026 | 0.0 | 718 |
| MS.gene90013.t1 | MTR_1g015540 | 43.550 | 783 | 407 | 13 | 25 | 791 | 4 | 767 | 0.0 | 635 |
| MS.gene90013.t1 | MTR_5g096980 | 40.445 | 764 | 420 | 15 | 46 | 797 | 23 | 763 | 0.0 | 560 |
| MS.gene90013.t1 | MTR_4g023250 | 65.385 | 130 | 43 | 1 | 667 | 796 | 1 | 128 | 8.45e-53 | 179 |
| MS.gene90013.t1 | MTR_4g023230 | 46.721 | 122 | 50 | 1 | 584 | 705 | 49 | 155 | 1.99e-31 | 120 |
| MS.gene90013.t1 | MTR_4g023390 | 47.115 | 104 | 33 | 1 | 670 | 773 | 16 | 97 | 2.07e-26 | 104 |
| MS.gene90013.t1 | MTR_4g023240 | 73.333 | 60 | 16 | 0 | 518 | 577 | 10 | 69 | 2.85e-23 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90013.t1 | AT5G06850 | 80.940 | 787 | 149 | 1 | 11 | 797 | 9 | 794 | 0.0 | 1374 |
| MS.gene90013.t1 | AT5G48060 | 71.429 | 791 | 211 | 6 | 11 | 797 | 257 | 1036 | 0.0 | 1207 |
| MS.gene90013.t1 | AT3G57880 | 67.342 | 790 | 238 | 9 | 9 | 797 | 3 | 773 | 0.0 | 1125 |
| MS.gene90013.t1 | AT3G57880 | 67.342 | 790 | 238 | 9 | 9 | 797 | 3 | 773 | 0.0 | 1125 |
| MS.gene90013.t1 | AT3G57880 | 67.342 | 790 | 238 | 9 | 9 | 797 | 3 | 773 | 0.0 | 1125 |
| MS.gene90013.t1 | AT3G57880 | 67.342 | 790 | 238 | 9 | 9 | 797 | 3 | 773 | 0.0 | 1125 |
| MS.gene90013.t1 | AT5G12970 | 65.570 | 790 | 248 | 7 | 9 | 797 | 3 | 769 | 0.0 | 1100 |
| MS.gene90013.t1 | AT1G51570 | 64.981 | 791 | 258 | 8 | 9 | 797 | 3 | 776 | 0.0 | 1098 |
| MS.gene90013.t1 | AT4G11610 | 61.923 | 801 | 279 | 8 | 1 | 797 | 233 | 1011 | 0.0 | 1053 |
| MS.gene90013.t1 | AT4G11610 | 61.923 | 801 | 279 | 8 | 1 | 797 | 96 | 874 | 0.0 | 1052 |
| MS.gene90013.t1 | AT4G11610 | 61.923 | 801 | 279 | 8 | 1 | 797 | 229 | 1007 | 0.0 | 1052 |
| MS.gene90013.t1 | AT1G22610 | 58.407 | 791 | 317 | 4 | 8 | 797 | 250 | 1029 | 0.0 | 992 |
| MS.gene90013.t1 | AT4G00700 | 56.767 | 761 | 317 | 7 | 42 | 797 | 253 | 1006 | 0.0 | 908 |
| MS.gene90013.t1 | AT4G00700 | 56.767 | 761 | 317 | 7 | 42 | 797 | 253 | 1006 | 0.0 | 908 |
| MS.gene90013.t1 | AT1G04150 | 54.110 | 815 | 321 | 15 | 6 | 797 | 228 | 1012 | 0.0 | 878 |
| MS.gene90013.t1 | AT3G61300 | 53.141 | 796 | 327 | 16 | 9 | 797 | 216 | 972 | 0.0 | 872 |
| MS.gene90013.t1 | AT4G20080 | 53.887 | 759 | 329 | 9 | 43 | 797 | 33 | 774 | 0.0 | 857 |
| MS.gene90013.t1 | AT1G74720 | 50.127 | 786 | 351 | 13 | 35 | 797 | 314 | 1081 | 0.0 | 765 |
| MS.gene90013.t1 | AT3G03680 | 49.483 | 774 | 336 | 15 | 49 | 797 | 274 | 1017 | 0.0 | 751 |
| MS.gene90013.t1 | AT5G17980 | 47.507 | 762 | 363 | 14 | 47 | 797 | 314 | 1049 | 0.0 | 717 |
| MS.gene90013.t1 | AT3G61720 | 37.272 | 821 | 452 | 19 | 11 | 797 | 4 | 795 | 1.50e-165 | 499 |
| MS.gene90013.t1 | AT5G03435 | 37.657 | 794 | 427 | 24 | 11 | 792 | 4 | 741 | 6.01e-157 | 475 |
| MS.gene90013.t1 | AT5G03435 | 40.304 | 593 | 308 | 16 | 11 | 597 | 4 | 556 | 4.78e-129 | 397 |
| MS.gene90013.t1 | AT5G44760 | 44.068 | 413 | 172 | 12 | 14 | 420 | 5 | 364 | 2.13e-100 | 319 |
| MS.gene90013.t1 | AT5G44760 | 35.766 | 137 | 39 | 1 | 563 | 699 | 364 | 451 | 2.30e-17 | 86.3 |
| MS.gene90013.t1 | AT1G03370 | 31.707 | 123 | 80 | 3 | 58 | 179 | 3 | 122 | 4.37e-11 | 67.0 |
| MS.gene90013.t1 | AT1G03370 | 31.707 | 123 | 80 | 3 | 58 | 179 | 3 | 122 | 5.99e-11 | 67.0 |
Find 151 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCGAAACTTTGGTATTTA+AGG | 0.059181 | 1.4:-40533009 | MS.gene90013:CDS |
| GCTCACATAATTTACCTTTA+TGG | 0.084008 | 1.4:-40532086 | MS.gene90013:CDS |
| TCAGATTCAGCTTCAGTTAA+AGG | 0.151763 | 1.4:-40533070 | MS.gene90013:CDS |
| ACATGTTTCTCATTGGAATA+TGG | 0.237452 | 1.4:-40531710 | MS.gene90013:CDS |
| GTGTATTGTTCATTCCATTT+TGG | 0.239153 | 1.4:+40532362 | None:intergenic |
| AAGATTGTTATTTCTGTTGC+TGG | 0.245800 | 1.4:-40531381 | MS.gene90013:CDS |
| TTACTTGTTCTAAAACCTTC+TGG | 0.249201 | 1.4:-40532164 | MS.gene90013:CDS |
| GGTATCTTAAACTATCTAAT+TGG | 0.260719 | 1.4:+40532015 | None:intergenic |
| TGGATTTGGTGGCAATTCTT+TGG | 0.274389 | 1.4:+40533459 | None:intergenic |
| TATCACATCTTGTGCCTTAG+AGG | 0.279796 | 1.4:+40531581 | None:intergenic |
| GCGAAAACTTGCTTCCATTC+GGG | 0.282351 | 1.4:+40533352 | None:intergenic |
| CACCTTAGAGTTTGTCTTGA+AGG | 0.286543 | 1.4:-40532611 | MS.gene90013:CDS |
| ATTGTTGGTAGGATCAATTC+TGG | 0.294073 | 1.4:+40531741 | None:intergenic |
| TCCGAAACTTTGGTATTTAA+GGG | 0.315843 | 1.4:-40533008 | MS.gene90013:CDS |
| TAATCATCTGTGTTTGGCTT+TGG | 0.316111 | 1.4:+40533631 | None:intergenic |
| CCTTGCACAGTCATAACTTT+TGG | 0.316380 | 1.4:-40532323 | MS.gene90013:CDS |
| GGCTTCAAGCTTTGCTTAGT+TGG | 0.317783 | 1.4:-40531479 | MS.gene90013:CDS |
| GTGTAATATCTATGAGTAAA+TGG | 0.321044 | 1.4:-40531842 | MS.gene90013:CDS |
| ACCCTTAAATACCAAAGTTT+CGG | 0.329185 | 1.4:+40533007 | None:intergenic |
| ACAGAAATAACAATCTTAAA+AGG | 0.330313 | 1.4:+40531387 | None:intergenic |
| CCACATTGGATTCGGCGTTT+TGG | 0.333074 | 1.4:+40532874 | None:intergenic |
| AGCTTGTAATCATCTGTGTT+TGG | 0.339723 | 1.4:+40533625 | None:intergenic |
| ACGCTTCCTGTGACTGGATT+TGG | 0.340820 | 1.4:+40533445 | None:intergenic |
| GCTTATTGTGTAGCAAAATA+TGG | 0.350897 | 1.4:-40532428 | MS.gene90013:CDS |
| GAAGAGCAGAACCACCTCTT+AGG | 0.360465 | 1.4:-40531962 | MS.gene90013:CDS |
| AACTCTTCATCTAGTTCATC+TGG | 0.366933 | 1.4:+40531618 | None:intergenic |
| GGCTTAGGCATCCAAAGTTT+AGG | 0.369172 | 1.4:-40531350 | MS.gene90013:CDS |
| TCGTTTATCAACTTTAGAAA+TGG | 0.370382 | 1.4:-40532213 | MS.gene90013:CDS |
| CCAACTTTCACTTCAACATA+AGG | 0.378608 | 1.4:+40533418 | None:intergenic |
| CGCGAAAACTTGCTTCCATT+CGG | 0.379563 | 1.4:+40533351 | None:intergenic |
| TTTCTCTACATGTTTCTCAT+TGG | 0.383690 | 1.4:-40531717 | MS.gene90013:CDS |
| GCTGGAGAACAAGGCGAGTC+CGG | 0.385111 | 1.4:-40532795 | MS.gene90013:CDS |
| TGGTACAACGTTGAAAGATT+TGG | 0.387221 | 1.4:-40532689 | MS.gene90013:CDS |
| TGCGGCGCCAAAGGACTATC+TGG | 0.389015 | 1.4:+40533202 | None:intergenic |
| GATAGGCTTAGGAGTGTTGC+AGG | 0.394826 | 1.4:-40531546 | MS.gene90013:CDS |
| CTATCTGGTGGAACTCTTGT+TGG | 0.399768 | 1.4:+40533217 | None:intergenic |
| CACCTTCAAGACAAACTCTA+AGG | 0.399784 | 1.4:+40532609 | None:intergenic |
| GTAGCTAGAGATGATTATAT+TGG | 0.404183 | 1.4:-40533268 | MS.gene90013:CDS |
| CAACTTTGGAAGCAACCAAT+TGG | 0.407270 | 1.4:-40532527 | MS.gene90013:CDS |
| TAGCAAAATATGGTATGAAA+TGG | 0.410325 | 1.4:-40532418 | MS.gene90013:CDS |
| GGAGGACAACGAGGCGGAAC+CGG | 0.416161 | 1.4:-40533562 | MS.gene90013:CDS |
| TCTTCGTTCCACATTGGATT+CGG | 0.417173 | 1.4:+40532866 | None:intergenic |
| CCAATTGGGATTCTTGAAGT+TGG | 0.419056 | 1.4:-40532512 | MS.gene90013:CDS |
| GGCGTTCTCGAAGGTGATAA+AGG | 0.419999 | 1.4:-40532662 | MS.gene90013:CDS |
| TCTGTGTTTGGCTTTGGAGC+AGG | 0.421237 | 1.4:+40533637 | None:intergenic |
| GGCAACTTGCTCCTAAACTT+TGG | 0.423193 | 1.4:+40531339 | None:intergenic |
| TCTAATTGGTTCACAGTGAA+TGG | 0.425729 | 1.4:+40532029 | None:intergenic |
| GTGAAGTTATGTTAGCGGTT+TGG | 0.426325 | 1.4:-40533135 | MS.gene90013:CDS |
| ACCAAGACACCCTCCACATA+TGG | 0.428256 | 1.4:-40531673 | MS.gene90013:CDS |
| TGATAAGAATGAGGTATGAT+AGG | 0.433867 | 1.4:-40531563 | MS.gene90013:CDS |
| TTGATGTGGATTCACATATA+TGG | 0.435933 | 1.4:-40531917 | MS.gene90013:CDS |
| GGATCTACGCTTCCTGTGAC+TGG | 0.438103 | 1.4:+40533439 | None:intergenic |
| AAGAAATTGCTTGGCACAGA+AGG | 0.441455 | 1.4:+40531318 | None:intergenic |
| CTGGAGAACAAGGCGAGTCC+GGG | 0.444554 | 1.4:-40532794 | MS.gene90013:CDS |
| AGCAAAATATGGTATGAAAT+GGG | 0.446499 | 1.4:-40532417 | MS.gene90013:CDS |
| AGATTGTTATTTCTGTTGCT+GGG | 0.455606 | 1.4:-40531380 | MS.gene90013:CDS |
| TTTATGTTAATCCGAAACTT+TGG | 0.456350 | 1.4:-40533018 | MS.gene90013:CDS |
| TCCATATGTGGAGGGTGTCT+TGG | 0.467356 | 1.4:+40531672 | None:intergenic |
| TTTCGGATTAACATAAACCT+TGG | 0.467361 | 1.4:+40533024 | None:intergenic |
| GAAGTAAAGGGTGTCCATAA+AGG | 0.467642 | 1.4:+40532072 | None:intergenic |
| GCCACAACTTCGTCTTTCCC+CGG | 0.471487 | 1.4:+40532776 | None:intergenic |
| TTGTACCACCGCGAATGCAC+CGG | 0.472389 | 1.4:+40532704 | None:intergenic |
| TTCTTCAAGAGGTTGCCATC+TGG | 0.472554 | 1.4:-40531300 | MS.gene90013:CDS |
| GACAATTGTCATTTAGGTGG+TGG | 0.473245 | 1.4:-40532293 | MS.gene90013:CDS |
| AACTTTGGAAGCAACCAATT+GGG | 0.474089 | 1.4:-40532526 | MS.gene90013:CDS |
| GAATGAGGTATGATAGGCTT+AGG | 0.474201 | 1.4:-40531557 | MS.gene90013:CDS |
| ATCATCGCCCGGTGCATTCG+CGG | 0.476775 | 1.4:-40532712 | MS.gene90013:CDS |
| CCAACTTCAAGAATCCCAAT+TGG | 0.478146 | 1.4:+40532512 | None:intergenic |
| ACATCTTGTGCCTTAGAGGT+TGG | 0.479165 | 1.4:+40531585 | None:intergenic |
| GGACTTTCACCAATGAAAAC+AGG | 0.481943 | 1.4:-40532473 | MS.gene90013:CDS |
| TTCCAAAGTTGTCTAGCAGT+TGG | 0.485379 | 1.4:+40532539 | None:intergenic |
| TCTTTCGCTGTAAAGCCAAC+CGG | 0.488325 | 1.4:+40533543 | None:intergenic |
| AGTTCCACCAGATAGTCCTT+TGG | 0.489398 | 1.4:-40533209 | MS.gene90013:CDS |
| ATGAACTTAAATTCTCAAGT+AGG | 0.491390 | 1.4:-40532637 | MS.gene90013:CDS |
| TGAACTAGTATTGTTGTCAC+TGG | 0.493829 | 1.4:+40531792 | None:intergenic |
| CGAAAACTTGCTTCCATTCG+GGG | 0.493876 | 1.4:+40533353 | None:intergenic |
| GAATCTGAATGCCATGCCTC+AGG | 0.494847 | 1.4:+40533085 | None:intergenic |
| CCTTATGTTGAAGTGAAAGT+TGG | 0.496099 | 1.4:-40533418 | MS.gene90013:CDS |
| AACCTCTTGAAGAAATTGCT+TGG | 0.498226 | 1.4:+40531309 | None:intergenic |
| GACCAACTGCTAGACAACTT+TGG | 0.501805 | 1.4:-40532541 | MS.gene90013:CDS |
| TCAACAACTTCTTTCCTAAG+AGG | 0.501997 | 1.4:+40531948 | None:intergenic |
| CTGCTACAATGTTCATAGCT+TGG | 0.502811 | 1.4:+40531994 | None:intergenic |
| TGCCAAGCAATTTCTTCAAG+AGG | 0.504743 | 1.4:-40531311 | MS.gene90013:CDS |
| CTCGAATTTGTTCAACGGCA+AGG | 0.512907 | 1.4:+40532745 | None:intergenic |
| AAGAGGTGAAGTTATGTTAG+CGG | 0.521890 | 1.4:-40533140 | MS.gene90013:CDS |
| AACGTTGAAAGATTTGGTTT+CGG | 0.525078 | 1.4:-40532683 | MS.gene90013:CDS |
| TGTACCACCGCGAATGCACC+GGG | 0.530409 | 1.4:+40532705 | None:intergenic |
| AGTTATGTTAGCGGTTTGGA+TGG | 0.531133 | 1.4:-40533131 | MS.gene90013:CDS |
| AGTTTACAATATTAGATCCA+AGG | 0.537053 | 1.4:-40533041 | MS.gene90013:CDS |
| AAAGACACAAAGCCAGAGCT+AGG | 0.537262 | 1.4:-40533601 | MS.gene90013:CDS |
| CGTTGAACAAATTCGAGACT+CGG | 0.538730 | 1.4:-40532739 | MS.gene90013:CDS |
| CTATACCATTGCGGCGCCAA+AGG | 0.540068 | 1.4:+40533193 | None:intergenic |
| CGTACTAACGCTGGAGAACA+AGG | 0.543363 | 1.4:-40532804 | MS.gene90013:CDS |
| TCAGCTTCAGTTAAAGGTGA+AGG | 0.543385 | 1.4:-40533064 | MS.gene90013:CDS |
| TGTATCACTTATATACATTG+TGG | 0.546946 | 1.4:+40532565 | None:intergenic |
| GCGCCGCAATGGTATAGACT+AGG | 0.547237 | 1.4:-40533187 | MS.gene90013:CDS |
| CGCCGCAATGGTATAGACTA+GGG | 0.547437 | 1.4:-40533186 | MS.gene90013:CDS |
| TTTGGTTTCGGCGTTCTCGA+AGG | 0.548524 | 1.4:-40532671 | MS.gene90013:CDS |
| GTTATGTTAGCGGTTTGGAT+GGG | 0.554019 | 1.4:-40533130 | MS.gene90013:CDS |
| ACAAGATCTTCGTTCCACAT+TGG | 0.557915 | 1.4:+40532860 | None:intergenic |
| AGAAGAAAACAAACCCCGAA+TGG | 0.558086 | 1.4:-40533366 | MS.gene90013:CDS |
| CTTCCTGTGACTGGATTTGG+TGG | 0.560390 | 1.4:+40533448 | None:intergenic |
| ATAGTCCTTTGGCGCCGCAA+TGG | 0.565983 | 1.4:-40533198 | MS.gene90013:CDS |
| GTTGGAATATTGAGTGCTCA+AGG | 0.566308 | 1.4:-40532494 | MS.gene90013:CDS |
| TTTGACAATTGTCATTTAGG+TGG | 0.567553 | 1.4:-40532296 | MS.gene90013:CDS |
| GACTCGGATGGATCATCGCC+CGG | 0.570812 | 1.4:-40532723 | MS.gene90013:CDS |
| ACAACTTCTTTCCTAAGAGG+TGG | 0.571006 | 1.4:+40531951 | None:intergenic |
| CCAAAAGTTATGACTGTGCA+AGG | 0.572940 | 1.4:+40532323 | None:intergenic |
| TTGCCACCAAATCCAGTCAC+AGG | 0.577826 | 1.4:-40533451 | MS.gene90013:CDS |
| CACAAGATGTGATAAGAATG+AGG | 0.578190 | 1.4:-40531572 | MS.gene90013:CDS |
| GTGAAAGTTGGCAACTACAA+AGG | 0.587577 | 1.4:-40533406 | MS.gene90013:CDS |
| GAACAAATTCGAGACTCGGA+TGG | 0.591471 | 1.4:-40532735 | MS.gene90013:CDS |
| CTTCTGTCTTGTAACTGCTG+TGG | 0.594601 | 1.4:-40531424 | MS.gene90013:CDS |
| CTTTGACAACGCGAACATAG+AGG | 0.595677 | 1.4:+40533482 | None:intergenic |
| AAAGGTGAAACAAGAACAAG+AGG | 0.601357 | 1.4:-40533157 | MS.gene90013:CDS |
| ATGAAGCGTTTCCTGAGGCA+TGG | 0.601952 | 1.4:-40533096 | MS.gene90013:CDS |
| TGTTGAATACATGCTTGATG+TGG | 0.606283 | 1.4:-40531931 | MS.gene90013:CDS |
| TATAGACTAGGGAATTTGAA+AGG | 0.609327 | 1.4:-40533175 | MS.gene90013:CDS |
| CCAAAACGCCGAATCCAATG+TGG | 0.614361 | 1.4:-40532874 | MS.gene90013:CDS |
| AAAGGAGAAGATACAATCAT+CGG | 0.615131 | 1.4:-40533323 | MS.gene90013:CDS |
| TCACCAATGAAAACAGGCAA+TGG | 0.618152 | 1.4:-40532467 | MS.gene90013:CDS |
| CGAGTCTCGAATTTGTTCAA+CGG | 0.618223 | 1.4:+40532740 | None:intergenic |
| TGTTCTCCAGCGTTAGTACG+AGG | 0.619408 | 1.4:+40532807 | None:intergenic |
| AGAAAACCTCGTACTAACGC+TGG | 0.619903 | 1.4:-40532813 | MS.gene90013:CDS |
| GGCTTGGTGAGGTACAAAAG+TGG | 0.626019 | 1.4:-40531821 | MS.gene90013:CDS |
| GACAACGAGGCGGAACCGGT+TGG | 0.626600 | 1.4:-40533558 | MS.gene90013:CDS |
| TGGAGAACAAGGCGAGTCCG+GGG | 0.628638 | 1.4:-40532793 | MS.gene90013:CDS |
| AGCTGATGAAGCGTTTCCTG+AGG | 0.631444 | 1.4:-40533101 | MS.gene90013:CDS |
| AACATTGTAGCAGTGAGGCT+AGG | 0.632784 | 1.4:-40531984 | MS.gene90013:CDS |
| GGTGGAAATTCTCAACAAAG+TGG | 0.639010 | 1.4:-40532275 | MS.gene90013:CDS |
| ATATCTATGAGTAAATGGCT+TGG | 0.643504 | 1.4:-40531837 | MS.gene90013:CDS |
| AGCATGCTATCAGCACCAGA+TGG | 0.646226 | 1.4:+40531285 | None:intergenic |
| TCCGGGGAAAGACGAAGTTG+TGG | 0.646466 | 1.4:-40532777 | MS.gene90013:CDS |
| ATCGCCCGGTGCATTCGCGG+TGG | 0.657134 | 1.4:-40532709 | MS.gene90013:CDS |
| TATGAGTAAATGGCTTGGTG+AGG | 0.658552 | 1.4:-40531832 | MS.gene90013:CDS |
| ATATTGCAACTCAAGGTGAG+AGG | 0.658618 | 1.4:-40531500 | MS.gene90013:CDS |
| AACAAGCACATACGACCTTG+TGG | 0.658930 | 1.4:-40533518 | MS.gene90013:CDS |
| GGGAGAATACAAACTGTGGT+TGG | 0.659713 | 1.4:-40531525 | MS.gene90013:CDS |
| GTTGGTGATATTGCAACTCA+AGG | 0.661902 | 1.4:-40531507 | MS.gene90013:CDS |
| TTCCCTAGTCTATACCATTG+CGG | 0.674872 | 1.4:+40533184 | None:intergenic |
| AATGGAATGAACAATACACA+TGG | 0.675943 | 1.4:-40532358 | MS.gene90013:CDS |
| CCGCCTCGTTGTCCTCCATG+TGG | 0.680531 | 1.4:+40533568 | None:intergenic |
| GGCGCCAAAGGACTATCTGG+TGG | 0.683541 | 1.4:+40533205 | None:intergenic |
| ATGGAATGAACAATACACAT+GGG | 0.694697 | 1.4:-40532357 | MS.gene90013:CDS |
| TGGCCACATGGAGGACAACG+AGG | 0.696057 | 1.4:-40533571 | MS.gene90013:CDS |
| ATTTGTACGAGACAAAGAGA+TGG | 0.696951 | 1.4:-40533290 | MS.gene90013:CDS |
| CCACATGGAGGACAACGAGG+CGG | 0.699639 | 1.4:-40533568 | MS.gene90013:CDS |
| ATAGGCTTAGGAGTGTTGCA+GGG | 0.702781 | 1.4:-40531545 | MS.gene90013:CDS |
| CTATGAACATTGTAGCAGTG+AGG | 0.715518 | 1.4:-40531989 | MS.gene90013:CDS |
| GGTAGAACATCTGTTCCACA+AGG | 0.716804 | 1.4:+40533503 | None:intergenic |
| TGCAGGGAGAATACAAACTG+TGG | 0.757731 | 1.4:-40531529 | MS.gene90013:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAATGATGCAAAAAT+TGG | - | chr1.4:40532685-40532704 | MS.gene90013:CDS | 20.0% |
| !! | ACAGAAATAACAATCTTAAA+AGG | + | chr1.4:40533549-40533568 | None:intergenic | 20.0% |
| !! | ATATGGATACAAAAATTTCA+TGG | - | chr1.4:40533277-40533296 | MS.gene90013:CDS | 20.0% |
| !! | TATGGATACAAAAATTTCAT+GGG | - | chr1.4:40533278-40533297 | MS.gene90013:CDS | 20.0% |
| !!! | AATTTTTGCATCATTAGTTT+TGG | + | chr1.4:40532686-40532705 | None:intergenic | 20.0% |
| ! | AACATGTAGAGAAAAATTGT+TGG | + | chr1.4:40533210-40533229 | None:intergenic | 25.0% |
| ! | AGCAAAATATGGTATGAAAT+GGG | - | chr1.4:40532516-40532535 | MS.gene90013:CDS | 25.0% |
| ! | AGTTTACAATATTAGATCCA+AGG | - | chr1.4:40531892-40531911 | MS.gene90013:CDS | 25.0% |
| ! | ATGAACTTAAATTCTCAAGT+AGG | - | chr1.4:40532296-40532315 | MS.gene90013:CDS | 25.0% |
| ! | GGTATCTTAAACTATCTAAT+TGG | + | chr1.4:40532921-40532940 | None:intergenic | 25.0% |
| ! | GTGTAATATCTATGAGTAAA+TGG | - | chr1.4:40533091-40533110 | MS.gene90013:CDS | 25.0% |
| ! | TAGCAAAATATGGTATGAAA+TGG | - | chr1.4:40532515-40532534 | MS.gene90013:CDS | 25.0% |
| ! | TGTATCACTTATATACATTG+TGG | + | chr1.4:40532371-40532390 | None:intergenic | 25.0% |
| ! | TTTATGTTAATCCGAAACTT+TGG | - | chr1.4:40531915-40531934 | MS.gene90013:CDS | 25.0% |
| !! | GAAATTTTTGTATCCATATG+TGG | + | chr1.4:40533276-40533295 | None:intergenic | 25.0% |
| !! | TCATTGGAATATGGAATTTT+AGG | - | chr1.4:40533232-40533251 | MS.gene90013:CDS | 25.0% |
| !! | TCGTTTATCAACTTTAGAAA+TGG | - | chr1.4:40532720-40532739 | MS.gene90013:CDS | 25.0% |
| !!! | AATGCATTTTTGGAAGTAAA+GGG | + | chr1.4:40532876-40532895 | None:intergenic | 25.0% |
| !!! | AGAATTGTTTCACTTTTTTC+AGG | - | chr1.4:40533069-40533088 | MS.gene90013:CDS | 25.0% |
| !!! | GTTTTTGACAATTGTCATTT+AGG | - | chr1.4:40532634-40532653 | MS.gene90013:CDS | 25.0% |
| !!! | TAATGCATTTTTGGAAGTAA+AGG | + | chr1.4:40532877-40532896 | None:intergenic | 25.0% |
| AAAGGAGAAGATACAATCAT+CGG | - | chr1.4:40531610-40531629 | MS.gene90013:CDS | 30.0% | |
| AATGGAATGAACAATACACA+TGG | - | chr1.4:40532575-40532594 | MS.gene90013:CDS | 30.0% | |
| ACAAACAAAAATGTTGCTCT+TGG | + | chr1.4:40533486-40533505 | None:intergenic | 30.0% | |
| ACATGTTTCTCATTGGAATA+TGG | - | chr1.4:40533223-40533242 | MS.gene90013:CDS | 30.0% | |
| ACCCTTAAATACCAAAGTTT+CGG | + | chr1.4:40531929-40531948 | None:intergenic | 30.0% | |
| ACCTTCTGGATTGAAAAAAA+TGG | - | chr1.4:40532783-40532802 | MS.gene90013:CDS | 30.0% | |
| ATATCTATGAGTAAATGGCT+TGG | - | chr1.4:40533096-40533115 | MS.gene90013:CDS | 30.0% | |
| ATCCGAAACTTTGGTATTTA+AGG | - | chr1.4:40531924-40531943 | MS.gene90013:CDS | 30.0% | |
| ATGGAATGAACAATACACAT+GGG | - | chr1.4:40532576-40532595 | MS.gene90013:CDS | 30.0% | |
| CCTTCTGGATTGAAAAAAAT+GGG | - | chr1.4:40532784-40532803 | MS.gene90013:CDS | 30.0% | |
| GCTCACATAATTTACCTTTA+TGG | - | chr1.4:40532847-40532866 | MS.gene90013:CDS | 30.0% | |
| GCTTATTGTGTAGCAAAATA+TGG | - | chr1.4:40532505-40532524 | MS.gene90013:CDS | 30.0% | |
| GTAGCTAGAGATGATTATAT+TGG | - | chr1.4:40531665-40531684 | MS.gene90013:CDS | 30.0% | |
| TATAGACTAGGGAATTTGAA+AGG | - | chr1.4:40531758-40531777 | MS.gene90013:CDS | 30.0% | |
| TCCGAAACTTTGGTATTTAA+GGG | - | chr1.4:40531925-40531944 | MS.gene90013:CDS | 30.0% | |
| TGATAAGAATGAGGTATGAT+AGG | - | chr1.4:40533370-40533389 | MS.gene90013:CDS | 30.0% | |
| TGTAGAGAAAAATTGTTGGT+AGG | + | chr1.4:40533206-40533225 | None:intergenic | 30.0% | |
| TTGATGTGGATTCACATATA+TGG | - | chr1.4:40533016-40533035 | MS.gene90013:CDS | 30.0% | |
| TTTCGGATTAACATAAACCT+TGG | + | chr1.4:40531912-40531931 | None:intergenic | 30.0% | |
| TTTCTCTACATGTTTCTCAT+TGG | - | chr1.4:40533216-40533235 | MS.gene90013:CDS | 30.0% | |
| ! | AACGTTGAAAGATTTGGTTT+CGG | - | chr1.4:40532250-40532269 | MS.gene90013:CDS | 30.0% |
| ! | ATTTTTGTATCCATATGTGG+AGG | + | chr1.4:40533273-40533292 | None:intergenic | 30.0% |
| ! | GTGTATTGTTCATTCCATTT+TGG | + | chr1.4:40532574-40532593 | None:intergenic | 30.0% |
| ! | GTTTTTGTAAAAGCTCAAGT+TGG | - | chr1.4:40532004-40532023 | MS.gene90013:CDS | 30.0% |
| ! | TGAGCTTTTACAAAAACTTG+TGG | + | chr1.4:40532001-40532020 | None:intergenic | 30.0% |
| ! | TTTGACAATTGTCATTTAGG+TGG | - | chr1.4:40532637-40532656 | MS.gene90013:CDS | 30.0% |
| ! | TTTTTGTATCCATATGTGGA+GGG | + | chr1.4:40533272-40533291 | None:intergenic | 30.0% |
| !! | AAGATTGTTATTTCTGTTGC+TGG | - | chr1.4:40533552-40533571 | MS.gene90013:CDS | 30.0% |
| !! | AGATTGTTATTTCTGTTGCT+GGG | - | chr1.4:40533553-40533572 | MS.gene90013:CDS | 30.0% |
| !! | CTGAGAGTTTTAATCCAAAA+TGG | - | chr1.4:40532557-40532576 | MS.gene90013:CDS | 30.0% |
| !! | TTACTTGTTCTAAAACCTTC+TGG | - | chr1.4:40532769-40532788 | MS.gene90013:CDS | 30.0% |
| !!! | GAAGGTTTTAGAACAAGTAA+TGG | + | chr1.4:40532769-40532788 | None:intergenic | 30.0% |
| AAAGGTGAAACAAGAACAAG+AGG | - | chr1.4:40531776-40531795 | MS.gene90013:CDS | 35.0% | |
| AACCTCTTGAAGAAATTGCT+TGG | + | chr1.4:40533627-40533646 | None:intergenic | 35.0% | |
| AAGAGGTGAAGTTATGTTAG+CGG | - | chr1.4:40531793-40531812 | MS.gene90013:CDS | 35.0% | |
| AGCTTGTAATCATCTGTGTT+TGG | + | chr1.4:40531311-40531330 | None:intergenic | 35.0% | |
| ATTTGTACGAGACAAAGAGA+TGG | - | chr1.4:40531643-40531662 | MS.gene90013:CDS | 35.0% | |
| CACAAGATGTGATAAGAATG+AGG | - | chr1.4:40533361-40533380 | MS.gene90013:CDS | 35.0% | |
| CCAACTTTCACTTCAACATA+AGG | + | chr1.4:40531518-40531537 | None:intergenic | 35.0% | |
| CCTTATGTTGAAGTGAAAGT+TGG | - | chr1.4:40531515-40531534 | MS.gene90013:CDS | 35.0% | |
| TCAACAACTTCTTTCCTAAG+AGG | + | chr1.4:40532988-40533007 | None:intergenic | 35.0% | |
| TCAGATTCAGCTTCAGTTAA+AGG | - | chr1.4:40531863-40531882 | MS.gene90013:CDS | 35.0% | |
| TGAACTAGTATTGTTGTCAC+TGG | + | chr1.4:40533144-40533163 | None:intergenic | 35.0% | |
| TGGTACAACGTTGAAAGATT+TGG | - | chr1.4:40532244-40532263 | MS.gene90013:CDS | 35.0% | |
| TGTTGAATACATGCTTGATG+TGG | - | chr1.4:40533002-40533021 | MS.gene90013:CDS | 35.0% | |
| TTACAAAAACTTGTGGTGGT+TGG | + | chr1.4:40531994-40532013 | None:intergenic | 35.0% | |
| ! | AACTCTTCATCTAGTTCATC+TGG | + | chr1.4:40533318-40533337 | None:intergenic | 35.0% |
| ! | AACTTTGGAAGCAACCAATT+GGG | - | chr1.4:40532407-40532426 | MS.gene90013:CDS | 35.0% |
| ! | ATTGTTGGTAGGATCAATTC+TGG | + | chr1.4:40533195-40533214 | None:intergenic | 35.0% |
| ! | GCTTTTACAAAAACTTGTGG+TGG | + | chr1.4:40531998-40532017 | None:intergenic | 35.0% |
| ! | GGATGCAAGTAATGCATTTT+TGG | + | chr1.4:40532886-40532905 | None:intergenic | 35.0% |
| ! | TAATCATCTGTGTTTGGCTT+TGG | + | chr1.4:40531305-40531324 | None:intergenic | 35.0% |
| ! | TCTAATTGGTTCACAGTGAA+TGG | + | chr1.4:40532907-40532926 | None:intergenic | 35.0% |
| ! | TGATACTTTTCCAACCTCTA+AGG | - | chr1.4:40533338-40533357 | MS.gene90013:CDS | 35.0% |
| ! | TTACCATTGCCTGTTTTCAT+TGG | + | chr1.4:40532472-40532491 | None:intergenic | 35.0% |
| !!! | CCCATTTTTTTCAATCCAGA+AGG | + | chr1.4:40532787-40532806 | None:intergenic | 35.0% |
| AAGAAATTGCTTGGCACAGA+AGG | + | chr1.4:40533618-40533637 | None:intergenic | 40.0% | |
| ACAACTTCTTTCCTAAGAGG+TGG | + | chr1.4:40532985-40533004 | None:intergenic | 40.0% | |
| ACAAGATCTTCGTTCCACAT+TGG | + | chr1.4:40532076-40532095 | None:intergenic | 40.0% | |
| AGAAGAAAACAAACCCCGAA+TGG | - | chr1.4:40531567-40531586 | MS.gene90013:CDS | 40.0% | |
| ATATTGCAACTCAAGGTGAG+AGG | - | chr1.4:40533433-40533452 | MS.gene90013:CDS | 40.0% | |
| CACCTTAGAGTTTGTCTTGA+AGG | - | chr1.4:40532322-40532341 | MS.gene90013:CDS | 40.0% | |
| CACCTTCAAGACAAACTCTA+AGG | + | chr1.4:40532327-40532346 | None:intergenic | 40.0% | |
| CCAAAAGTTATGACTGTGCA+AGG | + | chr1.4:40532613-40532632 | None:intergenic | 40.0% | |
| CCAACTTCAAGAATCCCAAT+TGG | + | chr1.4:40532424-40532443 | None:intergenic | 40.0% | |
| CCAATTGGGATTCTTGAAGT+TGG | - | chr1.4:40532421-40532440 | MS.gene90013:CDS | 40.0% | |
| CGTTGAACAAATTCGAGACT+CGG | - | chr1.4:40532194-40532213 | MS.gene90013:CDS | 40.0% | |
| CTATGAACATTGTAGCAGTG+AGG | - | chr1.4:40532944-40532963 | MS.gene90013:CDS | 40.0% | |
| CTGCTACAATGTTCATAGCT+TGG | + | chr1.4:40532942-40532961 | None:intergenic | 40.0% | |
| GAATGAGGTATGATAGGCTT+AGG | - | chr1.4:40533376-40533395 | MS.gene90013:CDS | 40.0% | |
| GGACTTTCACCAATGAAAAC+AGG | - | chr1.4:40532460-40532479 | MS.gene90013:CDS | 40.0% | |
| GGTGGAAATTCTCAACAAAG+TGG | - | chr1.4:40532658-40532677 | MS.gene90013:CDS | 40.0% | |
| GTGAAAGTTGGCAACTACAA+AGG | - | chr1.4:40531527-40531546 | MS.gene90013:CDS | 40.0% | |
| GTGAAGTTATGTTAGCGGTT+TGG | - | chr1.4:40531798-40531817 | MS.gene90013:CDS | 40.0% | |
| GTTGGAATATTGAGTGCTCA+AGG | - | chr1.4:40532439-40532458 | MS.gene90013:CDS | 40.0% | |
| TATCACATCTTGTGCCTTAG+AGG | + | chr1.4:40533355-40533374 | None:intergenic | 40.0% | |
| TCACCAATGAAAACAGGCAA+TGG | - | chr1.4:40532466-40532485 | MS.gene90013:CDS | 40.0% | |
| TCAGCTTCAGTTAAAGGTGA+AGG | - | chr1.4:40531869-40531888 | MS.gene90013:CDS | 40.0% | |
| TCTTCGTTCCACATTGGATT+CGG | + | chr1.4:40532070-40532089 | None:intergenic | 40.0% | |
| TGCCAAGCAATTTCTTCAAG+AGG | - | chr1.4:40533622-40533641 | MS.gene90013:CDS | 40.0% | |
| TTCCAAAGTTGTCTAGCAGT+TGG | + | chr1.4:40532397-40532416 | None:intergenic | 40.0% | |
| TTCCCTAGTCTATACCATTG+CGG | + | chr1.4:40531752-40531771 | None:intergenic | 40.0% | |
| ! | AGTACGAGGTTTTCTTCGAA+CGG | + | chr1.4:40532115-40532134 | None:intergenic | 40.0% |
| ! | AGTTATGTTAGCGGTTTGGA+TGG | - | chr1.4:40531802-40531821 | MS.gene90013:CDS | 40.0% |
| ! | CAACTTTGGAAGCAACCAAT+TGG | - | chr1.4:40532406-40532425 | MS.gene90013:CDS | 40.0% |
| ! | CCTTGCACAGTCATAACTTT+TGG | - | chr1.4:40532610-40532629 | MS.gene90013:CDS | 40.0% |
| ! | CGAGTCTCGAATTTGTTCAA+CGG | + | chr1.4:40532196-40532215 | None:intergenic | 40.0% |
| ! | GACAATTGTCATTTAGGTGG+TGG | - | chr1.4:40532640-40532659 | MS.gene90013:CDS | 40.0% |
| ! | GTTATGTTAGCGGTTTGGAT+GGG | - | chr1.4:40531803-40531822 | MS.gene90013:CDS | 40.0% |
| ! | TTTCTGTTGCTGGGATTTTC+TGG | - | chr1.4:40533562-40533581 | MS.gene90013:CDS | 40.0% |
| !! | GAAGTAAAGGGTGTCCATAA+AGG | + | chr1.4:40532864-40532883 | None:intergenic | 40.0% |
| !! | GTTGGTGATATTGCAACTCA+AGG | - | chr1.4:40533426-40533445 | MS.gene90013:CDS | 40.0% |
| !! | TATGAGTAAATGGCTTGGTG+AGG | - | chr1.4:40533101-40533120 | MS.gene90013:CDS | 40.0% |
| !! | TGGATTTGGTGGCAATTCTT+TGG | + | chr1.4:40531477-40531496 | None:intergenic | 40.0% |
| AAAGACACAAAGCCAGAGCT+AGG | - | chr1.4:40531332-40531351 | MS.gene90013:CDS | 45.0% | |
| AACAAGCACATACGACCTTG+TGG | - | chr1.4:40531415-40531434 | MS.gene90013:CDS | 45.0% | |
| AACATTGTAGCAGTGAGGCT+AGG | - | chr1.4:40532949-40532968 | MS.gene90013:CDS | 45.0% | |
| ACATCTTGTGCCTTAGAGGT+TGG | + | chr1.4:40533351-40533370 | None:intergenic | 45.0% | |
| AGAAAACCTCGTACTAACGC+TGG | - | chr1.4:40532120-40532139 | MS.gene90013:CDS | 45.0% | |
| AGCCAGAGCTAGGAGAAAAA+TGG | - | chr1.4:40531342-40531361 | MS.gene90013:CDS | 45.0% | |
| AGTTCCACCAGATAGTCCTT+TGG | - | chr1.4:40531724-40531743 | MS.gene90013:CDS | 45.0% | |
| CTAGGAGAAAAATGGCCACA+TGG | - | chr1.4:40531350-40531369 | MS.gene90013:CDS | 45.0% | |
| CTATCTGGTGGAACTCTTGT+TGG | + | chr1.4:40531719-40531738 | None:intergenic | 45.0% | |
| CTTCTGTCTTGTAACTGCTG+TGG | - | chr1.4:40533509-40533528 | MS.gene90013:CDS | 45.0% | |
| CTTTGACAACGCGAACATAG+AGG | + | chr1.4:40531454-40531473 | None:intergenic | 45.0% | |
| GAACAAATTCGAGACTCGGA+TGG | - | chr1.4:40532198-40532217 | MS.gene90013:CDS | 45.0% | |
| GACCAACTGCTAGACAACTT+TGG | - | chr1.4:40532392-40532411 | MS.gene90013:CDS | 45.0% | |
| GGCTTAGGCATCCAAAGTTT+AGG | - | chr1.4:40533583-40533602 | MS.gene90013:CDS | 45.0% | |
| GGCTTCAAGCTTTGCTTAGT+TGG | - | chr1.4:40533454-40533473 | MS.gene90013:CDS | 45.0% | |
| GGGAGAATACAAACTGTGGT+TGG | - | chr1.4:40533408-40533427 | MS.gene90013:CDS | 45.0% | |
| GGTAGAACATCTGTTCCACA+AGG | + | chr1.4:40531433-40531452 | None:intergenic | 45.0% | |
| TCTTTCGCTGTAAAGCCAAC+CGG | + | chr1.4:40531393-40531412 | None:intergenic | 45.0% | |
| TGCAGGGAGAATACAAACTG+TGG | - | chr1.4:40533404-40533423 | MS.gene90013:CDS | 45.0% | |
| TTCTTCAAGAGGTTGCCATC+TGG | - | chr1.4:40533633-40533652 | MS.gene90013:CDS | 45.0% | |
| ! | CGAAAACTTGCTTCCATTCG+GGG | + | chr1.4:40531583-40531602 | None:intergenic | 45.0% |
| ! | CGCGAAAACTTGCTTCCATT+CGG | + | chr1.4:40531585-40531604 | None:intergenic | 45.0% |
| ! | CTCGAATTTGTTCAACGGCA+AGG | + | chr1.4:40532191-40532210 | None:intergenic | 45.0% |
| ! | GCAAGTTTTCGCGTTCTCAA+AGG | - | chr1.4:40531592-40531611 | MS.gene90013:CDS | 45.0% |
| ! | GCGAAAACTTGCTTCCATTC+GGG | + | chr1.4:40531584-40531603 | None:intergenic | 45.0% |
| ! | GGCAACTTGCTCCTAAACTT+TGG | + | chr1.4:40533597-40533616 | None:intergenic | 45.0% |
| !! | ATAGGCTTAGGAGTGTTGCA+GGG | - | chr1.4:40533388-40533407 | MS.gene90013:CDS | 45.0% |
| !! | ATTGGATTCGGCGTTTTGGT+CGG | + | chr1.4:40532058-40532077 | None:intergenic | 45.0% |
| !!! | GGTGGTTGGCTTTTATCATG+TGG | + | chr1.4:40531980-40531999 | None:intergenic | 45.0% |
| !!! | TTGCTGGGATTTTCTGGCTT+AGG | - | chr1.4:40533568-40533587 | MS.gene90013:CDS | 45.0% |
| ACCAAGACACCCTCCACATA+TGG | - | chr1.4:40533260-40533279 | MS.gene90013:CDS | 50.0% | |
| ACGCTTCCTGTGACTGGATT+TGG | + | chr1.4:40531491-40531510 | None:intergenic | 50.0% | |
| AGCATGCTATCAGCACCAGA+TGG | + | chr1.4:40533651-40533670 | None:intergenic | 50.0% | |
| CCAAAACGCCGAATCCAATG+TGG | - | chr1.4:40532059-40532078 | MS.gene90013:CDS | 50.0% | |
| CGCCGCAATGGTATAGACTA+GGG | - | chr1.4:40531747-40531766 | MS.gene90013:CDS | 50.0% | |
| CGTACTAACGCTGGAGAACA+AGG | - | chr1.4:40532129-40532148 | MS.gene90013:CDS | 50.0% | |
| CTTCCTGTGACTGGATTTGG+TGG | + | chr1.4:40531488-40531507 | None:intergenic | 50.0% | |
| GAAGAGCAGAACCACCTCTT+AGG | - | chr1.4:40532971-40532990 | MS.gene90013:CDS | 50.0% | |
| GAATCTGAATGCCATGCCTC+AGG | + | chr1.4:40531851-40531870 | None:intergenic | 50.0% | |
| GGAGAAAAATGGCCACATGG+AGG | - | chr1.4:40531353-40531372 | MS.gene90013:CDS | 50.0% | |
| GGCGTTCTCGAAGGTGATAA+AGG | - | chr1.4:40532271-40532290 | MS.gene90013:CDS | 50.0% | |
| TGTTCTCCAGCGTTAGTACG+AGG | + | chr1.4:40532129-40532148 | None:intergenic | 50.0% | |
| TTGCCACCAAATCCAGTCAC+AGG | - | chr1.4:40531482-40531501 | MS.gene90013:CDS | 50.0% | |
| ! | AGCTGATGAAGCGTTTCCTG+AGG | - | chr1.4:40531832-40531851 | MS.gene90013:CDS | 50.0% |
| ! | ATGAAGCGTTTCCTGAGGCA+TGG | - | chr1.4:40531837-40531856 | MS.gene90013:CDS | 50.0% |
| ! | CCACATTGGATTCGGCGTTT+TGG | + | chr1.4:40532062-40532081 | None:intergenic | 50.0% |
| ! | TTTGGTTTCGGCGTTCTCGA+AGG | - | chr1.4:40532262-40532281 | MS.gene90013:CDS | 50.0% |
| !! | GATAGGCTTAGGAGTGTTGC+AGG | - | chr1.4:40533387-40533406 | MS.gene90013:CDS | 50.0% |
| !! | GGCTTGGTGAGGTACAAAAG+TGG | - | chr1.4:40533112-40533131 | MS.gene90013:CDS | 50.0% |
| !! | TCCATATGTGGAGGGTGTCT+TGG | + | chr1.4:40533264-40533283 | None:intergenic | 50.0% |
| !! | TCTGTGTTTGGCTTTGGAGC+AGG | + | chr1.4:40531299-40531318 | None:intergenic | 50.0% |
| !!! | GGCCATTTTTCTCCTAGCTC+TGG | + | chr1.4:40531347-40531366 | None:intergenic | 50.0% |
| ATAGTCCTTTGGCGCCGCAA+TGG | - | chr1.4:40531735-40531754 | MS.gene90013:CDS | 55.0% | |
| CTATACCATTGCGGCGCCAA+AGG | + | chr1.4:40531743-40531762 | None:intergenic | 55.0% | |
| GCCACAACTTCGTCTTTCCC+CGG | + | chr1.4:40532160-40532179 | None:intergenic | 55.0% | |
| GCGCCGCAATGGTATAGACT+AGG | - | chr1.4:40531746-40531765 | MS.gene90013:CDS | 55.0% | |
| GGATCTACGCTTCCTGTGAC+TGG | + | chr1.4:40531497-40531516 | None:intergenic | 55.0% | |
| TCCGGGGAAAGACGAAGTTG+TGG | - | chr1.4:40532156-40532175 | MS.gene90013:CDS | 55.0% | |
| TTGTACCACCGCGAATGCAC+CGG | + | chr1.4:40532232-40532251 | None:intergenic | 55.0% | |
| ATCATCGCCCGGTGCATTCG+CGG | - | chr1.4:40532221-40532240 | MS.gene90013:CDS | 60.0% | |
| CCACATGGAGGACAACGAGG+CGG | - | chr1.4:40531365-40531384 | MS.gene90013:CDS | 60.0% | |
| CTGGAGAACAAGGCGAGTCC+GGG | - | chr1.4:40532139-40532158 | MS.gene90013:CDS | 60.0% | |
| GACTCGGATGGATCATCGCC+CGG | - | chr1.4:40532210-40532229 | MS.gene90013:CDS | 60.0% | |
| GCTGGAGAACAAGGCGAGTC+CGG | - | chr1.4:40532138-40532157 | MS.gene90013:CDS | 60.0% | |
| GGCGCCAAAGGACTATCTGG+TGG | + | chr1.4:40531731-40531750 | None:intergenic | 60.0% | |
| TGCGGCGCCAAAGGACTATC+TGG | + | chr1.4:40531734-40531753 | None:intergenic | 60.0% | |
| TGGAGAACAAGGCGAGTCCG+GGG | - | chr1.4:40532140-40532159 | MS.gene90013:CDS | 60.0% | |
| TGGCCACATGGAGGACAACG+AGG | - | chr1.4:40531362-40531381 | MS.gene90013:CDS | 60.0% | |
| TGTACCACCGCGAATGCACC+GGG | + | chr1.4:40532231-40532250 | None:intergenic | 60.0% | |
| CCGCCTCGTTGTCCTCCATG+TGG | + | chr1.4:40531368-40531387 | None:intergenic | 65.0% | |
| GACAACGAGGCGGAACCGGT+TGG | - | chr1.4:40531375-40531394 | MS.gene90013:CDS | 65.0% | |
| GGAGGACAACGAGGCGGAAC+CGG | - | chr1.4:40531371-40531390 | MS.gene90013:CDS | 65.0% | |
| ATCGCCCGGTGCATTCGCGG+TGG | - | chr1.4:40532224-40532243 | MS.gene90013:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 40531281 | 40533674 | 40531281 | ID=MS.gene90013 |
| chr1.4 | mRNA | 40531281 | 40533674 | 40531281 | ID=MS.gene90013.t1;Parent=MS.gene90013 |
| chr1.4 | exon | 40531281 | 40533674 | 40531281 | ID=MS.gene90013.t1.exon1;Parent=MS.gene90013.t1 |
| chr1.4 | CDS | 40531281 | 40533674 | 40531281 | ID=cds.MS.gene90013.t1;Parent=MS.gene90013.t1 |
| Gene Sequence |
| Protein sequence |
