Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019466.t1 | XP_013444940.1 | 97.5 | 561 | 14 | 0 | 1 | 561 | 1 | 561 | 1.80E-260 | 908.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019466.t1 | A0A072TP55 | 97.5 | 561 | 14 | 0 | 1 | 561 | 24 | 584 | 1.3e-260 | 908.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019466 | MS.gene32213 | PPI |
| MS.gene013180 | MS.gene019466 | PPI |
| MS.gene055531 | MS.gene019466 | PPI |
| MS.gene019466 | MS.gene06253 | PPI |
| MS.gene019466 | MS.gene052564 | PPI |
| MS.gene052565 | MS.gene019466 | PPI |
| MS.gene33842 | MS.gene019466 | PPI |
| MS.gene41659 | MS.gene019466 | PPI |
| MS.gene019466 | MS.gene28664 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019466.t1 | MTR_8g032570 | 97.326 | 561 | 15 | 0 | 1 | 561 | 24 | 584 | 0.0 | 1095 |
| MS.gene019466.t1 | MTR_8g032570 | 97.326 | 561 | 15 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1094 |
| MS.gene019466.t1 | MTR_7g076220 | 78.191 | 564 | 116 | 3 | 1 | 561 | 1 | 560 | 0.0 | 882 |
| MS.gene019466.t1 | MTR_3g098730 | 35.009 | 537 | 323 | 13 | 37 | 560 | 30 | 553 | 1.13e-78 | 258 |
| MS.gene019466.t1 | MTR_4g091320 | 29.010 | 586 | 365 | 15 | 3 | 559 | 9 | 572 | 9.78e-61 | 211 |
| MS.gene019466.t1 | MTR_5g092900 | 53.279 | 122 | 18 | 4 | 372 | 491 | 32 | 116 | 1.39e-24 | 99.0 |
| MS.gene019466.t1 | MTR_1g018180 | 29.237 | 236 | 155 | 6 | 238 | 466 | 101 | 331 | 2.40e-19 | 90.1 |
| MS.gene019466.t1 | MTR_1g069845 | 28.862 | 246 | 162 | 7 | 238 | 478 | 480 | 717 | 1.46e-17 | 86.7 |
| MS.gene019466.t1 | MTR_1g069845 | 28.862 | 246 | 162 | 7 | 238 | 478 | 484 | 721 | 1.58e-17 | 86.7 |
| MS.gene019466.t1 | MTR_1g069845 | 28.862 | 246 | 162 | 7 | 238 | 478 | 363 | 600 | 1.61e-17 | 86.3 |
| MS.gene019466.t1 | MTR_4g007850 | 32.237 | 152 | 100 | 3 | 409 | 557 | 364 | 515 | 7.49e-16 | 80.9 |
| MS.gene019466.t1 | MTR_3g103050 | 27.027 | 222 | 146 | 7 | 238 | 448 | 91 | 307 | 2.01e-15 | 78.2 |
| MS.gene019466.t1 | MTR_7g097020 | 28.099 | 242 | 155 | 9 | 238 | 469 | 522 | 754 | 3.05e-15 | 79.3 |
| MS.gene019466.t1 | MTR_7g097020 | 31.034 | 203 | 134 | 4 | 337 | 536 | 496 | 695 | 4.86e-11 | 66.2 |
| MS.gene019466.t1 | MTR_7g078330 | 27.240 | 279 | 194 | 7 | 201 | 474 | 370 | 644 | 1.63e-14 | 77.0 |
| MS.gene019466.t1 | MTR_7g078330 | 27.018 | 285 | 195 | 7 | 146 | 425 | 361 | 637 | 3.03e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019466.t1 | AT2G45720 | 67.023 | 561 | 177 | 4 | 1 | 561 | 1 | 553 | 0.0 | 748 |
| MS.gene019466.t1 | AT2G45720 | 67.023 | 561 | 177 | 4 | 1 | 561 | 1 | 553 | 0.0 | 748 |
| MS.gene019466.t1 | AT2G45720 | 67.023 | 561 | 177 | 4 | 1 | 561 | 1 | 553 | 0.0 | 748 |
| MS.gene019466.t1 | AT2G45720 | 67.023 | 561 | 177 | 4 | 1 | 561 | 1 | 553 | 0.0 | 748 |
| MS.gene019466.t1 | AT2G45720 | 67.023 | 561 | 177 | 4 | 1 | 561 | 1 | 553 | 0.0 | 748 |
| MS.gene019466.t1 | AT1G01830 | 63.588 | 563 | 198 | 5 | 1 | 560 | 16 | 574 | 0.0 | 673 |
| MS.gene019466.t1 | AT1G01830 | 63.588 | 563 | 198 | 5 | 1 | 560 | 16 | 574 | 0.0 | 673 |
| MS.gene019466.t1 | AT1G01830 | 63.588 | 563 | 198 | 5 | 1 | 560 | 16 | 574 | 0.0 | 673 |
| MS.gene019466.t1 | AT5G50900 | 38.230 | 531 | 312 | 9 | 40 | 560 | 30 | 554 | 1.19e-101 | 318 |
| MS.gene019466.t1 | AT1G61350 | 27.788 | 547 | 360 | 12 | 38 | 559 | 32 | 568 | 6.35e-61 | 211 |
| MS.gene019466.t1 | AT2G05810 | 32.037 | 540 | 341 | 12 | 37 | 558 | 41 | 572 | 2.27e-49 | 180 |
| MS.gene019466.t1 | AT2G05810 | 32.037 | 540 | 341 | 12 | 37 | 558 | 41 | 572 | 2.27e-49 | 180 |
| MS.gene019466.t1 | AT5G58680 | 28.279 | 244 | 163 | 6 | 234 | 470 | 99 | 337 | 1.95e-21 | 96.7 |
| MS.gene019466.t1 | AT3G01400 | 26.293 | 232 | 159 | 6 | 238 | 462 | 105 | 331 | 1.54e-16 | 81.6 |
| MS.gene019466.t1 | AT2G23140 | 24.691 | 324 | 198 | 7 | 148 | 470 | 537 | 815 | 1.47e-14 | 77.4 |
| MS.gene019466.t1 | AT2G23140 | 24.691 | 324 | 198 | 7 | 148 | 470 | 537 | 815 | 1.47e-14 | 77.4 |
| MS.gene019466.t1 | AT2G23140 | 24.691 | 324 | 198 | 7 | 148 | 470 | 540 | 818 | 1.56e-14 | 77.4 |
| MS.gene019466.t1 | AT2G23140 | 24.691 | 324 | 198 | 7 | 148 | 470 | 348 | 626 | 5.67e-14 | 75.5 |
| MS.gene019466.t1 | AT2G23140 | 24.691 | 324 | 198 | 7 | 148 | 470 | 348 | 626 | 5.67e-14 | 75.5 |
| MS.gene019466.t1 | AT2G28830 | 25.387 | 323 | 185 | 7 | 151 | 464 | 280 | 555 | 3.55e-12 | 69.7 |
| MS.gene019466.t1 | AT3G20170 | 25.796 | 314 | 223 | 7 | 185 | 493 | 94 | 402 | 1.93e-11 | 67.0 |
| MS.gene019466.t1 | AT5G67340 | 26.923 | 286 | 196 | 8 | 146 | 425 | 415 | 693 | 4.92e-11 | 66.2 |
| MS.gene019466.t1 | AT5G67340 | 26.923 | 286 | 196 | 8 | 146 | 425 | 415 | 693 | 4.92e-11 | 66.2 |
Find 87 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTGCAATTCAATGTTTC+TGG | 0.143782 | 8.1:+69001722 | MS.gene019466:CDS |
| GAAAATGATCATTTCAAAAT+TGG | 0.161848 | 8.1:+69001448 | MS.gene019466:CDS |
| AGTGATCTTGATGCATTAAT+TGG | 0.208436 | 8.1:+69001635 | MS.gene019466:CDS |
| ACAAAAGCAAAAGAGGTAAA+AGG | 0.218390 | 8.1:+69001410 | MS.gene019466:CDS |
| TAAGCTTGATTTGAATTTAA+AGG | 0.223787 | 8.1:+69001658 | MS.gene019466:CDS |
| GATAAATCTGATAGCTTTGT+TGG | 0.250349 | 8.1:-69001479 | None:intergenic |
| TGATAAAAGTGTGCCGAATT+TGG | 0.271000 | 8.1:+69002762 | MS.gene019466:CDS |
| CTTAACAATGGAATGTTGTT+AGG | 0.279304 | 8.1:+69002301 | MS.gene019466:CDS |
| ATGATTTCATATGGAGCAAT+AGG | 0.295280 | 8.1:+69002880 | MS.gene019466:CDS |
| TTGTACTTTGAAGAATATTT+CGG | 0.300330 | 8.1:+69002216 | MS.gene019466:CDS |
| AGGTGGCGTTCGAAGCATTT+TGG | 0.301690 | 8.1:+69002402 | MS.gene019466:CDS |
| TCCGGAAGTGAGACAGGTTT+TGG | 0.307249 | 8.1:+69002243 | MS.gene019466:CDS |
| CAGGAGCAATGTTGTAGCTT+TGG | 0.328852 | 8.1:+69001898 | MS.gene019466:CDS |
| GAAGAATATTTCGGCTGTTC+CGG | 0.352070 | 8.1:+69002225 | MS.gene019466:CDS |
| AAATACGCAGTTTGTTGCCT+TGG | 0.353804 | 8.1:+69002823 | MS.gene019466:CDS |
| ATATGTTCTCTCGTTGAATC+AGG | 0.354019 | 8.1:+69001974 | MS.gene019466:CDS |
| TGAAACACATTGCAATATAA+AGG | 0.363467 | 8.1:+69001766 | MS.gene019466:CDS |
| GAGGAAACTCTGGTTTCTCT+TGG | 0.367522 | 8.1:+69002496 | MS.gene019466:CDS |
| ATTCCAAATGACCGATTTGA+AGG | 0.386292 | 8.1:-69001802 | None:intergenic |
| AGAAGATGAGAAGAATGTTT+TGG | 0.395990 | 8.1:+69001865 | MS.gene019466:CDS |
| ACTTTGCAAGGAACAATTGC+AGG | 0.396923 | 8.1:+69001529 | MS.gene019466:CDS |
| GCCAAAACCTGTCTCACTTC+CGG | 0.399317 | 8.1:-69002244 | None:intergenic |
| GGAATCGAAACACAAAGCTT+TGG | 0.406964 | 8.1:+69001820 | MS.gene019466:CDS |
| TCAAGCAATTGAACCAAATT+CGG | 0.411317 | 8.1:-69002775 | None:intergenic |
| CAGGTGGTAGCTGCGAAAAC+TGG | 0.414403 | 8.1:+69001993 | MS.gene019466:CDS |
| ATTAGCTGAGTTATGTTTGA+AGG | 0.415785 | 8.1:+69001583 | MS.gene019466:CDS |
| ATTGAGATGAAGAAAATGTT+AGG | 0.426418 | 8.1:+69002610 | MS.gene019466:CDS |
| GCGCCTTCAAATCGGTCATT+TGG | 0.429433 | 8.1:+69001799 | MS.gene019466:CDS |
| GGCTGAAGAAGGTGTTGTTA+AGG | 0.433839 | 8.1:+69002264 | MS.gene019466:CDS |
| CAAAAGCAAAAGAGGTAAAA+GGG | 0.447886 | 8.1:+69001411 | MS.gene019466:CDS |
| CAGCAACATCAACAAGGATA+AGG | 0.452305 | 8.1:+69001933 | MS.gene019466:CDS |
| AAGAAAATGTTAGGTGAAGT+TGG | 0.452479 | 8.1:+69002619 | MS.gene019466:CDS |
| TGCTCTTACAAAAGCAAAAG+AGG | 0.453910 | 8.1:+69001403 | MS.gene019466:CDS |
| CTTATTGAGATGGAGATTCC+AGG | 0.454254 | 8.1:+69002916 | MS.gene019466:CDS |
| AGGCTATTGTTTCTCTTCAA+AGG | 0.458318 | 8.1:+69002086 | MS.gene019466:CDS |
| AAAGAGGTAAAAGGGTTTCA+AGG | 0.463216 | 8.1:+69001419 | MS.gene019466:CDS |
| AGCAACATCAACAAGGATAA+GGG | 0.463755 | 8.1:+69001934 | MS.gene019466:CDS |
| GGCTGTTCCGGAAGTGAGAC+AGG | 0.464868 | 8.1:+69002237 | MS.gene019466:CDS |
| TGCTTGAAAGATTGGAAAGA+GGG | 0.471530 | 8.1:+69002950 | MS.gene019466:CDS |
| AAGAGGTTGATGATTTCATA+TGG | 0.478705 | 8.1:+69002871 | MS.gene019466:CDS |
| TTAGTCGAGCTTTGTCAGAT+TGG | 0.481298 | 8.1:+69002166 | MS.gene019466:CDS |
| TTCAAAGAATGCACTTTGCA+AGG | 0.481446 | 8.1:+69001517 | MS.gene019466:CDS |
| CTATTGATCAACATGCTTGA+GGG | 0.487366 | 8.1:+69002652 | MS.gene019466:CDS |
| TGATTTCATATGGAGCAATA+GGG | 0.489291 | 8.1:+69002881 | MS.gene019466:CDS |
| TAGTGCTGTTGCTAAAGAAA+AGG | 0.489657 | 8.1:+69002066 | MS.gene019466:CDS |
| TCAAGCATGTTGATCAATAG+AGG | 0.491275 | 8.1:-69002649 | None:intergenic |
| AGGTAAAAGGGTTTCAAGGT+AGG | 0.497943 | 8.1:+69001423 | MS.gene019466:CDS |
| ATCGGTTTCCGAGGAAACTC+TGG | 0.509299 | 8.1:+69002486 | MS.gene019466:CDS |
| ATACATGTTCAACAGAAGAA+TGG | 0.512048 | 8.1:+69001351 | MS.gene019466:CDS |
| TCTATTGATCAACATGCTTG+AGG | 0.513990 | 8.1:+69002651 | MS.gene019466:CDS |
| ACAGCAGATTCTTGAGGAAG+TGG | 0.514857 | 8.1:-69002439 | None:intergenic |
| CTACTCGCGCGCCTTCAAAT+CGG | 0.521728 | 8.1:+69001791 | MS.gene019466:CDS |
| TGTTTGAAGGAGAAATATGA+AGG | 0.531029 | 8.1:+69001596 | MS.gene019466:CDS |
| CTTCCTCAAGAATCTGCTGT+TGG | 0.535097 | 8.1:+69002442 | MS.gene019466:CDS |
| TTGCTTGAAAGATTGGAAAG+AGG | 0.535251 | 8.1:+69002949 | MS.gene019466:CDS |
| TGCGAAACAATGCGCTGCAT+CGG | 0.539824 | 8.1:+69002564 | MS.gene019466:CDS |
| TGCGATCGTCGGACATGGAG+GGG | 0.541802 | 8.1:+69002135 | MS.gene019466:CDS |
| ATCTGACAAAGCTCGACTAA+CGG | 0.545060 | 8.1:-69002163 | None:intergenic |
| TCTTCAAAGGTTGTCTATGA+CGG | 0.545473 | 8.1:+69002099 | MS.gene019466:CDS |
| TCTCGTTGCATCGGTTTCCG+AGG | 0.548267 | 8.1:+69002477 | MS.gene019466:CDS |
| GCGCTGCATCGGTTATATGC+AGG | 0.549822 | 8.1:+69002575 | MS.gene019466:CDS |
| TCTGAAGAAGCTTATTGAGA+TGG | 0.553377 | 8.1:+69002906 | MS.gene019466:CDS |
| GATTCAACAAGCCTTATAAG+TGG | 0.553541 | 8.1:-69002040 | None:intergenic |
| ATTGAGGAATCTCGTTGCAT+CGG | 0.553997 | 8.1:+69002468 | MS.gene019466:CDS |
| GTGCGATCGTCGGACATGGA+GGG | 0.555235 | 8.1:+69002134 | MS.gene019466:CDS |
| ATGATCAATCTTCTTAACAA+TGG | 0.556218 | 8.1:+69002289 | MS.gene019466:CDS |
| AAGAGAAACCAGAGTTTCCT+CGG | 0.556662 | 8.1:-69002494 | None:intergenic |
| GAAAACTGGTTAGTTTCTGA+AGG | 0.563650 | 8.1:+69002007 | MS.gene019466:CDS |
| AGAAGGTCTGTTATATCAGA+AGG | 0.569037 | 8.1:+69002382 | MS.gene019466:CDS |
| ACTCGTGCGATCGTCGGACA+TGG | 0.574468 | 8.1:+69002130 | MS.gene019466:CDS |
| CTTCTTGTAAGAAATGCAAG+AGG | 0.577874 | 8.1:+69002854 | MS.gene019466:CDS |
| TAAAAGGGTTTCAAGGTAGG+TGG | 0.577886 | 8.1:+69001426 | MS.gene019466:CDS |
| GACACAACTCGTGCGATCGT+CGG | 0.582663 | 8.1:+69002124 | MS.gene019466:CDS |
| AAATCGAAGAGAGGTTAAGA+AGG | 0.584354 | 8.1:+69002738 | MS.gene019466:CDS |
| TACAAGAAGAAAGTGATCCA+AGG | 0.619451 | 8.1:-69002840 | None:intergenic |
| TCAACAAGCCTTATAAGTGG+TGG | 0.632485 | 8.1:-69002037 | None:intergenic |
| CAAGCAATGAGAATCTGAGA+AGG | 0.635445 | 8.1:+69002365 | MS.gene019466:CDS |
| TTCAAAACATGAACTAAACA+AGG | 0.642239 | 8.1:-69002526 | None:intergenic |
| CGTGCGATCGTCGGACATGG+AGG | 0.642977 | 8.1:+69002133 | MS.gene019466:CDS |
| GCACCAACAGCAGATTCTTG+AGG | 0.646827 | 8.1:-69002445 | None:intergenic |
| TGTTCTCTCGTTGAATCAGG+TGG | 0.652003 | 8.1:+69001977 | MS.gene019466:CDS |
| AATCTGCTGTTGGTGCATTG+AGG | 0.654433 | 8.1:+69002452 | MS.gene019466:CDS |
| GTGTCAAAGACACTAAGAGA+AGG | 0.656877 | 8.1:+69001554 | MS.gene019466:CDS |
| AACTAAACTCTCTTCCACCA+TGG | 0.661810 | 8.1:-69001315 | None:intergenic |
| TGCTTACAGCAACATCAACA+AGG | 0.669898 | 8.1:+69001927 | MS.gene019466:CDS |
| AGGTCTGTTATATCAGAAGG+TGG | 0.670018 | 8.1:+69002385 | MS.gene019466:CDS |
| TCTGTCGCAAAATCGAAGAG+AGG | 0.676427 | 8.1:+69002729 | MS.gene019466:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATGATCATTTCAAAAT+TGG | + | chr8.1:69001448-69001467 | MS.gene019466:CDS | 20.0% |
| !!! | TAAGCTTGATTTGAATTTAA+AGG | + | chr8.1:69001658-69001677 | MS.gene019466:CDS | 20.0% |
| !!! | TTGTACTTTGAAGAATATTT+CGG | + | chr8.1:69002216-69002235 | MS.gene019466:CDS | 20.0% |
| ! | ATGATCAATCTTCTTAACAA+TGG | + | chr8.1:69002289-69002308 | MS.gene019466:CDS | 25.0% |
| ! | ATTGAGATGAAGAAAATGTT+AGG | + | chr8.1:69002610-69002629 | MS.gene019466:CDS | 25.0% |
| ! | TAAAAAGTTGCTTGAAAGAT+TGG | + | chr8.1:69002942-69002961 | MS.gene019466:CDS | 25.0% |
| ! | TGAAACACATTGCAATATAA+AGG | + | chr8.1:69001766-69001785 | MS.gene019466:CDS | 25.0% |
| ! | TTCAAAACATGAACTAAACA+AGG | - | chr8.1:69002529-69002548 | None:intergenic | 25.0% |
| !!! | TTAGTTCATGTTTTGAAATC+AGG | + | chr8.1:69002532-69002551 | MS.gene019466:CDS | 25.0% |
| AAGAAAATGTTAGGTGAAGT+TGG | + | chr8.1:69002619-69002638 | MS.gene019466:CDS | 30.0% | |
| ACAAAAGCAAAAGAGGTAAA+AGG | + | chr8.1:69001410-69001429 | MS.gene019466:CDS | 30.0% | |
| ACTTTGCAATTCAATGTTTC+TGG | + | chr8.1:69001722-69001741 | MS.gene019466:CDS | 30.0% | |
| AGTGATCTTGATGCATTAAT+TGG | + | chr8.1:69001635-69001654 | MS.gene019466:CDS | 30.0% | |
| ATACATGTTCAACAGAAGAA+TGG | + | chr8.1:69001351-69001370 | MS.gene019466:CDS | 30.0% | |
| ATGATTTCATATGGAGCAAT+AGG | + | chr8.1:69002880-69002899 | MS.gene019466:CDS | 30.0% | |
| ATTAGCTGAGTTATGTTTGA+AGG | + | chr8.1:69001583-69001602 | MS.gene019466:CDS | 30.0% | |
| CAAAAGCAAAAGAGGTAAAA+GGG | + | chr8.1:69001411-69001430 | MS.gene019466:CDS | 30.0% | |
| CTTAACAATGGAATGTTGTT+AGG | + | chr8.1:69002301-69002320 | MS.gene019466:CDS | 30.0% | |
| TCAAGCAATTGAACCAAATT+CGG | - | chr8.1:69002778-69002797 | None:intergenic | 30.0% | |
| TGATTTCATATGGAGCAATA+GGG | + | chr8.1:69002881-69002900 | MS.gene019466:CDS | 30.0% | |
| TGTTTGAAGGAGAAATATGA+AGG | + | chr8.1:69001596-69001615 | MS.gene019466:CDS | 30.0% | |
| TTAACAAAAACTGGTGTACT+TGG | + | chr8.1:69001692-69001711 | MS.gene019466:CDS | 30.0% | |
| ! | AGAAGATGAGAAGAATGTTT+TGG | + | chr8.1:69001865-69001884 | MS.gene019466:CDS | 30.0% |
| ! | AGTGCATTCTTTGAAAAACA+AGG | - | chr8.1:69001512-69001531 | None:intergenic | 30.0% |
| ! | GTGCATTCTTTGAAAAACAA+GGG | - | chr8.1:69001511-69001530 | None:intergenic | 30.0% |
| !! | AAGAGGTTGATGATTTCATA+TGG | + | chr8.1:69002871-69002890 | MS.gene019466:CDS | 30.0% |
| !! | GATAAATCTGATAGCTTTGT+TGG | - | chr8.1:69001482-69001501 | None:intergenic | 30.0% |
| !! | TGTAGCTTGTTAACAAAAAC+TGG | + | chr8.1:69001683-69001702 | MS.gene019466:CDS | 30.0% |
| !! | TTTGCTTTTGTAAGAGCAAT+AGG | - | chr8.1:69001401-69001420 | None:intergenic | 30.0% |
| !!! | GTTTTGAAATCAGGATCATT+AGG | + | chr8.1:69002541-69002560 | MS.gene019466:CDS | 30.0% |
| !!! | TATTTTTTCGCAGTGTTTTG+TGG | - | chr8.1:69002808-69002827 | None:intergenic | 30.0% |
| AAAGAGGTAAAAGGGTTTCA+AGG | + | chr8.1:69001419-69001438 | MS.gene019466:CDS | 35.0% | |
| AAATCGAAGAGAGGTTAAGA+AGG | + | chr8.1:69002738-69002757 | MS.gene019466:CDS | 35.0% | |
| AGAAGGTCTGTTATATCAGA+AGG | + | chr8.1:69002382-69002401 | MS.gene019466:CDS | 35.0% | |
| AGCAACATCAACAAGGATAA+GGG | + | chr8.1:69001934-69001953 | MS.gene019466:CDS | 35.0% | |
| ATATGTTCTCTCGTTGAATC+AGG | + | chr8.1:69001974-69001993 | MS.gene019466:CDS | 35.0% | |
| CTATTGATCAACATGCTTGA+GGG | + | chr8.1:69002652-69002671 | MS.gene019466:CDS | 35.0% | |
| CTTCTTGTAAGAAATGCAAG+AGG | + | chr8.1:69002854-69002873 | MS.gene019466:CDS | 35.0% | |
| TACAAGAAGAAAGTGATCCA+AGG | - | chr8.1:69002843-69002862 | None:intergenic | 35.0% | |
| TCAAGCATGTTGATCAATAG+AGG | - | chr8.1:69002652-69002671 | None:intergenic | 35.0% | |
| TCTATTGATCAACATGCTTG+AGG | + | chr8.1:69002651-69002670 | MS.gene019466:CDS | 35.0% | |
| TCTGAAGAAGCTTATTGAGA+TGG | + | chr8.1:69002906-69002925 | MS.gene019466:CDS | 35.0% | |
| TCTTCAAAGGTTGTCTATGA+CGG | + | chr8.1:69002099-69002118 | MS.gene019466:CDS | 35.0% | |
| TGCTCTTACAAAAGCAAAAG+AGG | + | chr8.1:69001403-69001422 | MS.gene019466:CDS | 35.0% | |
| TGCTTGAAAGATTGGAAAGA+GGG | + | chr8.1:69002950-69002969 | MS.gene019466:CDS | 35.0% | |
| TTCAAAGAATGCACTTTGCA+AGG | + | chr8.1:69001517-69001536 | MS.gene019466:CDS | 35.0% | |
| TTGCTTGAAAGATTGGAAAG+AGG | + | chr8.1:69002949-69002968 | MS.gene019466:CDS | 35.0% | |
| ! | AGGCTATTGTTTCTCTTCAA+AGG | + | chr8.1:69002086-69002105 | MS.gene019466:CDS | 35.0% |
| ! | CATTCTTTGAAAAACAAGGG+TGG | - | chr8.1:69001508-69001527 | None:intergenic | 35.0% |
| ! | GATTCAACAAGCCTTATAAG+TGG | - | chr8.1:69002043-69002062 | None:intergenic | 35.0% |
| ! | TAGTGCTGTTGCTAAAGAAA+AGG | + | chr8.1:69002066-69002085 | MS.gene019466:CDS | 35.0% |
| ! | TGATAAAAGTGTGCCGAATT+TGG | + | chr8.1:69002762-69002781 | MS.gene019466:CDS | 35.0% |
| !! | ATTCCAAATGACCGATTTGA+AGG | - | chr8.1:69001805-69001824 | None:intergenic | 35.0% |
| !! | GAAAACTGGTTAGTTTCTGA+AGG | + | chr8.1:69002007-69002026 | MS.gene019466:CDS | 35.0% |
| !!! | AGCATTTTGGCTTATCTTGA+TGG | + | chr8.1:69002415-69002434 | MS.gene019466:CDS | 35.0% |
| !!! | ATGTTTTGGCTGTTTTTTGC+AGG | + | chr8.1:69001879-69001898 | MS.gene019466:CDS | 35.0% |
| AAGAGAAACCAGAGTTTCCT+CGG | - | chr8.1:69002497-69002516 | None:intergenic | 40.0% | |
| ACTTTGCAAGGAACAATTGC+AGG | + | chr8.1:69001529-69001548 | MS.gene019466:CDS | 40.0% | |
| AGGTAAAAGGGTTTCAAGGT+AGG | + | chr8.1:69001423-69001442 | MS.gene019466:CDS | 40.0% | |
| AGGTCTGTTATATCAGAAGG+TGG | + | chr8.1:69002385-69002404 | MS.gene019466:CDS | 40.0% | |
| ATCTGACAAAGCTCGACTAA+CGG | - | chr8.1:69002166-69002185 | None:intergenic | 40.0% | |
| ATTGAGGAATCTCGTTGCAT+CGG | + | chr8.1:69002468-69002487 | MS.gene019466:CDS | 40.0% | |
| CAAGCAATGAGAATCTGAGA+AGG | + | chr8.1:69002365-69002384 | MS.gene019466:CDS | 40.0% | |
| CAGCAACATCAACAAGGATA+AGG | + | chr8.1:69001933-69001952 | MS.gene019466:CDS | 40.0% | |
| CTTATTGAGATGGAGATTCC+AGG | + | chr8.1:69002916-69002935 | MS.gene019466:CDS | 40.0% | |
| GAAGAATATTTCGGCTGTTC+CGG | + | chr8.1:69002225-69002244 | MS.gene019466:CDS | 40.0% | |
| GGAATCGAAACACAAAGCTT+TGG | + | chr8.1:69001820-69001839 | MS.gene019466:CDS | 40.0% | |
| GTGTCAAAGACACTAAGAGA+AGG | + | chr8.1:69001554-69001573 | MS.gene019466:CDS | 40.0% | |
| TAAAAGGGTTTCAAGGTAGG+TGG | + | chr8.1:69001426-69001445 | MS.gene019466:CDS | 40.0% | |
| TGCTTACAGCAACATCAACA+AGG | + | chr8.1:69001927-69001946 | MS.gene019466:CDS | 40.0% | |
| ! | GTGTTTTGCCACCACTTATA+AGG | + | chr8.1:69002029-69002048 | MS.gene019466:CDS | 40.0% |
| ! | TCAACAAGCCTTATAAGTGG+TGG | - | chr8.1:69002040-69002059 | None:intergenic | 40.0% |
| ! | TTAGTCGAGCTTTGTCAGAT+TGG | + | chr8.1:69002166-69002185 | MS.gene019466:CDS | 40.0% |
| !! | AAATACGCAGTTTGTTGCCT+TGG | + | chr8.1:69002823-69002842 | MS.gene019466:CDS | 40.0% |
| !!! | TCAAGCAACTTTTTAGCTCC+TGG | - | chr8.1:69002937-69002956 | None:intergenic | 40.0% |
| AATCTGCTGTTGGTGCATTG+AGG | + | chr8.1:69002452-69002471 | MS.gene019466:CDS | 45.0% | |
| ACAGCAGATTCTTGAGGAAG+TGG | - | chr8.1:69002442-69002461 | None:intergenic | 45.0% | |
| CAGGAGCAATGTTGTAGCTT+TGG | + | chr8.1:69001898-69001917 | MS.gene019466:CDS | 45.0% | |
| CTTCCTCAAGAATCTGCTGT+TGG | + | chr8.1:69002442-69002461 | MS.gene019466:CDS | 45.0% | |
| TCTGTCGCAAAATCGAAGAG+AGG | + | chr8.1:69002729-69002748 | MS.gene019466:CDS | 45.0% | |
| TGTTCTCTCGTTGAATCAGG+TGG | + | chr8.1:69001977-69001996 | MS.gene019466:CDS | 45.0% | |
| ! | GAGGAAACTCTGGTTTCTCT+TGG | + | chr8.1:69002496-69002515 | MS.gene019466:CDS | 45.0% |
| ! | TTCGCAGTGTTTTGTGGACT+AGG | - | chr8.1:69002802-69002821 | None:intergenic | 45.0% |
| !! | GGCTGAAGAAGGTGTTGTTA+AGG | + | chr8.1:69002264-69002283 | MS.gene019466:CDS | 45.0% |
| !!! | AGACAGGTTTTGGCTGAAGA+AGG | + | chr8.1:69002253-69002272 | MS.gene019466:CDS | 45.0% |
| GCACCAACAGCAGATTCTTG+AGG | - | chr8.1:69002448-69002467 | None:intergenic | 50.0% | |
| GCCAAAACCTGTCTCACTTC+CGG | - | chr8.1:69002247-69002266 | None:intergenic | 50.0% | |
| GCGCCTTCAAATCGGTCATT+TGG | + | chr8.1:69001799-69001818 | MS.gene019466:CDS | 50.0% | |
| TGCGAAACAATGCGCTGCAT+CGG | + | chr8.1:69002564-69002583 | MS.gene019466:CDS | 50.0% | |
| ! | ATCGGTTTCCGAGGAAACTC+TGG | + | chr8.1:69002486-69002505 | MS.gene019466:CDS | 50.0% |
| ! | TCCGGAAGTGAGACAGGTTT+TGG | + | chr8.1:69002243-69002262 | MS.gene019466:CDS | 50.0% |
| !! | AGGTGGCGTTCGAAGCATTT+TGG | + | chr8.1:69002402-69002421 | MS.gene019466:CDS | 50.0% |
| CAGGTGGTAGCTGCGAAAAC+TGG | + | chr8.1:69001993-69002012 | MS.gene019466:CDS | 55.0% | |
| CTACTCGCGCGCCTTCAAAT+CGG | + | chr8.1:69001791-69001810 | MS.gene019466:CDS | 55.0% | |
| GACACAACTCGTGCGATCGT+CGG | + | chr8.1:69002124-69002143 | MS.gene019466:CDS | 55.0% | |
| !! | GCGCTGCATCGGTTATATGC+AGG | + | chr8.1:69002575-69002594 | MS.gene019466:CDS | 55.0% |
| !! | TCTCGTTGCATCGGTTTCCG+AGG | + | chr8.1:69002477-69002496 | MS.gene019466:CDS | 55.0% |
| ACTCGTGCGATCGTCGGACA+TGG | + | chr8.1:69002130-69002149 | MS.gene019466:CDS | 60.0% | |
| GGCTGTTCCGGAAGTGAGAC+AGG | + | chr8.1:69002237-69002256 | MS.gene019466:CDS | 60.0% | |
| GTGCGATCGTCGGACATGGA+GGG | + | chr8.1:69002134-69002153 | MS.gene019466:CDS | 60.0% | |
| TGCGATCGTCGGACATGGAG+GGG | + | chr8.1:69002135-69002154 | MS.gene019466:CDS | 60.0% | |
| CGTGCGATCGTCGGACATGG+AGG | + | chr8.1:69002133-69002152 | MS.gene019466:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 69001317 | 69003002 | 69001317 | ID=MS.gene019466 |
| chr8.1 | mRNA | 69001317 | 69003002 | 69001317 | ID=MS.gene019466.t1;Parent=MS.gene019466 |
| chr8.1 | exon | 69001317 | 69003002 | 69001317 | ID=MS.gene019466.t1.exon1;Parent=MS.gene019466.t1 |
| chr8.1 | CDS | 69001317 | 69003002 | 69001317 | ID=cds.MS.gene019466.t1;Parent=MS.gene019466.t1 |
| Gene Sequence |
| Protein sequence |
