Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41659.t1 | XP_003602759.1 | 97.8 | 555 | 11 | 1 | 1 | 555 | 1 | 554 | 4.60E-301 | 1043.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41659.t1 | G7J3A9 | 97.8 | 555 | 11 | 1 | 1 | 555 | 1 | 554 | 3.3e-301 | 1043.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055531 | MS.gene41659 | 0.971951 | 5.60E-134 | -1.69E-46 |
| MS.gene058720 | MS.gene41659 | 0.825395 | 4.80E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene41659 | MS.gene023795 | PPI |
| MS.gene41659 | MS.gene36899 | PPI |
| MS.gene41659 | MS.gene52172 | PPI |
| MS.gene27647 | MS.gene41659 | PPI |
| MS.gene41659 | MS.gene32213 | PPI |
| MS.gene41659 | MS.gene42235 | PPI |
| MS.gene41659 | MS.gene57486 | PPI |
| MS.gene41659 | MS.gene052564 | PPI |
| MS.gene41659 | MS.gene33842 | PPI |
| MS.gene41659 | MS.gene052565 | PPI |
| MS.gene41659 | MS.gene019466 | PPI |
| MS.gene41659 | MS.gene28664 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41659.t1 | MTR_3g098730 | 97.838 | 555 | 11 | 1 | 1 | 555 | 1 | 554 | 0.0 | 1104 |
| MS.gene41659.t1 | MTR_8g032570 | 35.250 | 539 | 320 | 13 | 30 | 554 | 37 | 560 | 3.09e-83 | 270 |
| MS.gene41659.t1 | MTR_8g032570 | 35.250 | 539 | 320 | 13 | 30 | 554 | 60 | 583 | 9.31e-83 | 269 |
| MS.gene41659.t1 | MTR_7g076220 | 32.963 | 540 | 333 | 10 | 30 | 554 | 34 | 559 | 1.38e-80 | 263 |
| MS.gene41659.t1 | MTR_4g091320 | 28.571 | 532 | 356 | 13 | 29 | 543 | 38 | 562 | 1.19e-44 | 166 |
| MS.gene41659.t1 | MTR_3g466220 | 32.338 | 201 | 128 | 5 | 157 | 356 | 568 | 761 | 1.01e-13 | 74.7 |
| MS.gene41659.t1 | MTR_3g466220 | 32.338 | 201 | 128 | 5 | 157 | 356 | 547 | 740 | 1.43e-13 | 74.3 |
| MS.gene41659.t1 | MTR_4g063800 | 32.558 | 215 | 139 | 4 | 139 | 351 | 348 | 558 | 3.01e-13 | 72.8 |
| MS.gene41659.t1 | MTR_7g097020 | 31.429 | 210 | 140 | 3 | 147 | 356 | 485 | 690 | 4.16e-13 | 72.8 |
| MS.gene41659.t1 | MTR_1g069845 | 31.429 | 210 | 140 | 3 | 147 | 356 | 443 | 648 | 1.79e-12 | 70.5 |
| MS.gene41659.t1 | MTR_1g069845 | 31.429 | 210 | 140 | 3 | 147 | 356 | 447 | 652 | 2.16e-12 | 70.5 |
| MS.gene41659.t1 | MTR_1g069845 | 31.429 | 210 | 140 | 3 | 147 | 356 | 326 | 531 | 3.12e-12 | 69.7 |
| MS.gene41659.t1 | MTR_4g485520 | 29.817 | 218 | 146 | 4 | 139 | 356 | 372 | 582 | 1.33e-11 | 67.8 |
| MS.gene41659.t1 | MTR_4g485520 | 29.817 | 218 | 146 | 4 | 139 | 356 | 204 | 414 | 1.42e-11 | 67.4 |
| MS.gene41659.t1 | MTR_5g083030 | 29.134 | 254 | 154 | 9 | 135 | 383 | 396 | 628 | 2.66e-11 | 66.6 |
| MS.gene41659.t1 | MTR_4g007850 | 35.043 | 117 | 74 | 2 | 419 | 533 | 380 | 496 | 5.05e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41659.t1 | AT5G50900 | 58.932 | 543 | 211 | 6 | 20 | 555 | 18 | 555 | 0.0 | 619 |
| MS.gene41659.t1 | AT2G45720 | 34.457 | 534 | 325 | 12 | 29 | 554 | 36 | 552 | 2.52e-86 | 278 |
| MS.gene41659.t1 | AT2G45720 | 34.457 | 534 | 325 | 12 | 29 | 554 | 36 | 552 | 2.52e-86 | 278 |
| MS.gene41659.t1 | AT2G45720 | 34.457 | 534 | 325 | 12 | 29 | 554 | 36 | 552 | 2.52e-86 | 278 |
| MS.gene41659.t1 | AT2G45720 | 34.457 | 534 | 325 | 12 | 29 | 554 | 36 | 552 | 2.52e-86 | 278 |
| MS.gene41659.t1 | AT2G45720 | 34.457 | 534 | 325 | 12 | 29 | 554 | 36 | 552 | 2.52e-86 | 278 |
| MS.gene41659.t1 | AT1G01830 | 34.470 | 557 | 329 | 17 | 16 | 554 | 36 | 574 | 1.23e-70 | 237 |
| MS.gene41659.t1 | AT1G01830 | 34.470 | 557 | 329 | 17 | 16 | 554 | 36 | 574 | 1.23e-70 | 237 |
| MS.gene41659.t1 | AT1G01830 | 34.470 | 557 | 329 | 17 | 16 | 554 | 36 | 574 | 1.23e-70 | 237 |
| MS.gene41659.t1 | AT1G61350 | 27.206 | 544 | 364 | 14 | 33 | 553 | 34 | 568 | 1.46e-45 | 169 |
| MS.gene41659.t1 | AT2G05810 | 28.425 | 489 | 328 | 10 | 84 | 555 | 93 | 576 | 4.18e-39 | 151 |
| MS.gene41659.t1 | AT2G05810 | 28.425 | 489 | 328 | 10 | 84 | 555 | 93 | 576 | 4.18e-39 | 151 |
| MS.gene41659.t1 | AT1G23030 | 30.939 | 181 | 123 | 1 | 142 | 322 | 331 | 509 | 8.36e-13 | 71.6 |
| MS.gene41659.t1 | AT2G23140 | 28.571 | 217 | 151 | 3 | 140 | 356 | 542 | 754 | 8.13e-12 | 68.6 |
| MS.gene41659.t1 | AT2G23140 | 28.571 | 217 | 151 | 3 | 140 | 356 | 539 | 751 | 8.70e-12 | 68.6 |
| MS.gene41659.t1 | AT2G23140 | 28.571 | 217 | 151 | 3 | 140 | 356 | 539 | 751 | 8.70e-12 | 68.6 |
| MS.gene41659.t1 | AT2G23140 | 28.571 | 217 | 151 | 3 | 140 | 356 | 350 | 562 | 2.44e-11 | 67.0 |
| MS.gene41659.t1 | AT2G23140 | 28.571 | 217 | 151 | 3 | 140 | 356 | 350 | 562 | 2.44e-11 | 67.0 |
Find 171 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTACCGTGGGGTAAAATT+TGG | 0.152310 | 3.4:-88683972 | None:intergenic |
| GAATCATTTGGTTAGGGTTT+TGG | 0.180873 | 3.4:+88684386 | MS.gene41659:CDS |
| GAACCCTGCTTTGGTTAATT+TGG | 0.181771 | 3.4:+88685160 | MS.gene41659:CDS |
| GGTTGAAATGTTGAGGTATT+TGG | 0.223216 | 3.4:+88684815 | MS.gene41659:CDS |
| GGCTAAGTTTAATGAAATTA+AGG | 0.251879 | 3.4:+88684584 | MS.gene41659:CDS |
| TTGAGTGTTTGAAGAATTAT+TGG | 0.266104 | 3.4:+88684757 | MS.gene41659:CDS |
| GCTTGTTGAGTTGGATATTC+CGG | 0.273134 | 3.4:+88685280 | MS.gene41659:CDS |
| GAAATACCCTGTTTCGGTTC+TGG | 0.283357 | 3.4:+88685187 | MS.gene41659:CDS |
| ATTGCAGTGGCGCGTGATTC+TGG | 0.283476 | 3.4:-88684165 | None:intergenic |
| AGAAATCGGTGAGGTGGTTT+TGG | 0.290234 | 3.4:-88683840 | None:intergenic |
| TGAGTTGGTGGTGGAGGATT+TGG | 0.294911 | 3.4:-88683875 | None:intergenic |
| GAAAGCTTGTATTGCGCTTC+AGG | 0.297814 | 3.4:+88684434 | MS.gene41659:CDS |
| CTTTCAATAGAAGGATCTTT+AGG | 0.301417 | 3.4:+88685099 | MS.gene41659:CDS |
| GACTTGGTCGTGGTAAGATT+TGG | 0.304663 | 3.4:+88685324 | MS.gene41659:CDS |
| GGGTTGGCTTCGTCTGGAAC+GGG | 0.312249 | 3.4:+88684645 | MS.gene41659:CDS |
| AATCGATTTGGCTTTGAGTT+TGG | 0.314588 | 3.4:-88683996 | None:intergenic |
| GGGTTTGTTGGGAGGGTGAT+TGG | 0.317282 | 3.4:+88684876 | MS.gene41659:CDS |
| ACTTGGTCGTGGTAAGATTT+GGG | 0.323155 | 3.4:+88685325 | MS.gene41659:CDS |
| TGCAGCACCCTTTCAATAGA+AGG | 0.329460 | 3.4:+88685090 | MS.gene41659:CDS |
| AGATCGAACGGCTTCACGTT+TGG | 0.340147 | 3.4:-88684103 | None:intergenic |
| GGATGAGAGTATGAGGGTTT+TGG | 0.343750 | 3.4:+88684716 | MS.gene41659:CDS |
| TGTTGTTGAATCATTTGGTT+AGG | 0.343807 | 3.4:+88684379 | MS.gene41659:CDS |
| TTGTTAGGGTTGGCTTCGTC+TGG | 0.344793 | 3.4:+88684639 | MS.gene41659:CDS |
| GGATGGAGTGGAGGAGGTGA+AGG | 0.346870 | 3.4:-88683903 | None:intergenic |
| AAACGGCGTCGTTGAGGGTT+TGG | 0.352514 | 3.4:-88683927 | None:intergenic |
| GTTGTTGTTGTTGAATCATT+TGG | 0.357475 | 3.4:+88684374 | MS.gene41659:CDS |
| GGTGGAATTTCGTCTCTGTT+AGG | 0.358232 | 3.4:+88684501 | MS.gene41659:CDS |
| TTTACCGTGGGGTAAAATTT+GGG | 0.360306 | 3.4:-88683971 | None:intergenic |
| GACTCCGAAGATTGACCATT+TGG | 0.363460 | 3.4:-88683803 | None:intergenic |
| CTTGTTGAGTTGGATATTCC+GGG | 0.366525 | 3.4:+88685281 | MS.gene41659:CDS |
| TGGTGAAGGGTTTGTTGGGA+GGG | 0.366712 | 3.4:+88684869 | MS.gene41659:CDS |
| TAACCAAAGCAGGGTTCAAT+AGG | 0.373568 | 3.4:-88685154 | None:intergenic |
| AGTGAAACCAGAACCGAAAC+AGG | 0.386932 | 3.4:-88685194 | None:intergenic |
| AGGTTCAGACAAACGCTGAT+AGG | 0.387176 | 3.4:-88683730 | None:intergenic |
| AGGGTTGGCTTCGTCTGGAA+CGG | 0.394672 | 3.4:+88684644 | MS.gene41659:CDS |
| TGCGAGGGCTGTTTATGCTA+TGG | 0.395074 | 3.4:+88684938 | MS.gene41659:CDS |
| TTTGAAGAATTATTGGGATT+CGG | 0.396056 | 3.4:+88684764 | MS.gene41659:CDS |
| CCAACTAAAACCTCATCAAT+TGG | 0.397057 | 3.4:-88684849 | None:intergenic |
| TTAGTTGGTGAAGGGTTTGT+TGG | 0.400245 | 3.4:+88684864 | MS.gene41659:CDS |
| TCACCTATTGAACCCTGCTT+TGG | 0.400666 | 3.4:+88685151 | MS.gene41659:CDS |
| GGAGAGTGAGTTGGTGGTGG+AGG | 0.401750 | 3.4:-88683881 | None:intergenic |
| TAGTTGGTGAAGGGTTTGTT+GGG | 0.401880 | 3.4:+88684865 | MS.gene41659:CDS |
| TGGCGATAAGTGAATCGATT+TGG | 0.404988 | 3.4:-88684008 | None:intergenic |
| CGGAAACAAATGGTGGCTGC+TGG | 0.406988 | 3.4:+88685236 | MS.gene41659:CDS |
| GGATAAGAAATACCCTGTTT+CGG | 0.411451 | 3.4:+88685181 | MS.gene41659:CDS |
| TTGTGTGGCAAATTTGATTT+CGG | 0.412915 | 3.4:+88684692 | MS.gene41659:CDS |
| AAGGGAGAGTGAGTTGGTGG+TGG | 0.415218 | 3.4:-88683884 | None:intergenic |
| GCGAGGGCTGTTTATGCTAT+GGG | 0.416753 | 3.4:+88684939 | MS.gene41659:CDS |
| AAATAAGACGAGAAAGGAAA+TGG | 0.420093 | 3.4:+88684974 | MS.gene41659:CDS |
| TCCTTCTTTGATTAAGATGT+TGG | 0.421703 | 3.4:+88685013 | MS.gene41659:CDS |
| AGAAATTCATTTCATGATGA+AGG | 0.422434 | 3.4:+88683687 | None:intergenic |
| GTGTAGTTCCGGTGCTGGTT+CGG | 0.423585 | 3.4:+88684250 | MS.gene41659:CDS |
| GGCTTCGTCTGGAACGGGGT+TGG | 0.429253 | 3.4:+88684650 | MS.gene41659:CDS |
| TTATCCAAATTAACCAAAGC+AGG | 0.430725 | 3.4:-88685164 | None:intergenic |
| TTTCGGAGGATGAGAGTATG+AGG | 0.432008 | 3.4:+88684709 | MS.gene41659:CDS |
| CTCATCGCACGGTTGCAAAT+CGG | 0.432560 | 3.4:+88684138 | MS.gene41659:CDS |
| CTCCTTCATATCAGAGGAGC+TGG | 0.435157 | 3.4:-88684283 | None:intergenic |
| GTGGAATTTCGTCTCTGTTA+GGG | 0.438416 | 3.4:+88684502 | MS.gene41659:CDS |
| GCAAGGTGTAGTTCCGGTGC+TGG | 0.439174 | 3.4:+88684245 | MS.gene41659:CDS |
| GTTTATGCTATGGGTTTGAA+TGG | 0.440282 | 3.4:+88684948 | MS.gene41659:CDS |
| GGAATATTCAGTGGAGAAAT+CGG | 0.443636 | 3.4:-88683854 | None:intergenic |
| TGAAATTAAGGAGAATTTCG+TGG | 0.448289 | 3.4:+88684596 | MS.gene41659:CDS |
| ATCTGCTGCAATGGCGTTGT+CGG | 0.448484 | 3.4:+88685061 | MS.gene41659:CDS |
| GGTTCAAAGAAATTGTTAGA+TGG | 0.449366 | 3.4:+88685302 | MS.gene41659:CDS |
| GAGTGAAACGGCGTCGTTGA+GGG | 0.451125 | 3.4:-88683932 | None:intergenic |
| TTGGTGAAGGGTTTGTTGGG+AGG | 0.455506 | 3.4:+88684868 | MS.gene41659:CDS |
| AAGAAATTGTTAGATGGACT+TGG | 0.456660 | 3.4:+88685308 | MS.gene41659:CDS |
| TTTGGAGGATGGAGTGGAGG+AGG | 0.460053 | 3.4:-88683909 | None:intergenic |
| TAAAGATCCTTCTATTGAAA+GGG | 0.462836 | 3.4:-88685097 | None:intergenic |
| CTAAAGATCCTTCTATTGAA+AGG | 0.463381 | 3.4:-88685098 | None:intergenic |
| GTTGTTGAATCATTTGGTTA+GGG | 0.469282 | 3.4:+88684380 | MS.gene41659:CDS |
| GTGAAGGGAGAGTGAGTTGG+TGG | 0.471053 | 3.4:-88683887 | None:intergenic |
| CGCAGTCGGTGACGTGGCGG+TGG | 0.472374 | 3.4:-88684035 | None:intergenic |
| TACGCAGAAGCTTGTTGAGT+TGG | 0.472425 | 3.4:+88685271 | MS.gene41659:CDS |
| AATAAGACGAGAAAGGAAAT+GGG | 0.475260 | 3.4:+88684975 | MS.gene41659:CDS |
| AAAACCAAATGGTCAATCTT+CGG | 0.476063 | 3.4:+88683799 | MS.gene41659:CDS |
| GTCGTTGAGGGTTTGGAGGA+TGG | 0.478197 | 3.4:-88683920 | None:intergenic |
| CGGCGTCGTTGAGGGTTTGG+AGG | 0.482940 | 3.4:-88683924 | None:intergenic |
| TCTTTGATTAAGATGTTGGA+TGG | 0.483116 | 3.4:+88685017 | MS.gene41659:CDS |
| GGTGAGGATTGCGGCTGCGA+GGG | 0.490524 | 3.4:+88684923 | MS.gene41659:CDS |
| TGAGTGTTTGAAGAATTATT+GGG | 0.492153 | 3.4:+88684758 | MS.gene41659:CDS |
| TGATTCAGAGTCTTGAAGTA+GGG | 0.493354 | 3.4:+88684793 | MS.gene41659:CDS |
| TCCAACATCTTAATCAAAGA+AGG | 0.499119 | 3.4:-88685014 | None:intergenic |
| GGAAACAAATGGTGGCTGCT+GGG | 0.501374 | 3.4:+88685237 | MS.gene41659:CDS |
| TGAGGGTTTGGAGGATGGAG+TGG | 0.501954 | 3.4:-88683915 | None:intergenic |
| AGGGACAATGCTAGAGCGAT+TGG | 0.504635 | 3.4:+88684471 | MS.gene41659:CDS |
| GGGTTTGGAGGATGGAGTGG+AGG | 0.505537 | 3.4:-88683912 | None:intergenic |
| GATGGAGTGGAGGAGGTGAA+GGG | 0.509401 | 3.4:-88683902 | None:intergenic |
| TTGTTAGATGGACTTGGTCG+TGG | 0.511994 | 3.4:+88685314 | MS.gene41659:CDS |
| TTCCAGCTCCTCTGATATGA+AGG | 0.514211 | 3.4:+88684281 | MS.gene41659:CDS |
| TTTCGAGGAGGAGGCCGCTA+CGG | 0.514584 | 3.4:-88684068 | None:intergenic |
| GCTGCATAACCTTGTGAACC+TGG | 0.516453 | 3.4:-88684543 | None:intergenic |
| GCTTCACGTTTGGAGAAAGC+GGG | 0.517549 | 3.4:-88684093 | None:intergenic |
| TGCTATTTCGAGAGTTTCCA+CGG | 0.517769 | 3.4:+88684317 | MS.gene41659:CDS |
| GAGGTGAAGGGAGAGTGAGT+TGG | 0.520380 | 3.4:-88683890 | None:intergenic |
| ATTAAGATGTTGGATGGGAA+AGG | 0.520569 | 3.4:+88685023 | MS.gene41659:CDS |
| TTCAGGCGTTGAGTTTGACT+AGG | 0.520825 | 3.4:+88684451 | MS.gene41659:CDS |
| CGTCGCGCAAGGTGTAGTTC+CGG | 0.521124 | 3.4:+88684239 | MS.gene41659:CDS |
| ATTTGTCAAGGCGGAACACC+AGG | 0.523455 | 3.4:+88684525 | MS.gene41659:CDS |
| GGTGACGTGGCGGTGGAGAG+TGG | 0.523638 | 3.4:-88684028 | None:intergenic |
| GAAGACTTGTCGGAAACAAA+TGG | 0.525091 | 3.4:+88685226 | MS.gene41659:CDS |
| TCTAACAATTTCTTTGAACC+CGG | 0.526693 | 3.4:-88685299 | None:intergenic |
| GGATCTTTAGGAAGGATGAG+AGG | 0.530549 | 3.4:+88685111 | MS.gene41659:CDS |
| ATGATTCAGAGTCTTGAAGT+AGG | 0.530753 | 3.4:+88684792 | MS.gene41659:CDS |
| GGCTTCACGTTTGGAGAAAG+CGG | 0.535924 | 3.4:-88684094 | None:intergenic |
| TTCGGAGGATGAGAGTATGA+GGG | 0.538974 | 3.4:+88684710 | MS.gene41659:CDS |
| CTTTGATTAAGATGTTGGAT+GGG | 0.539664 | 3.4:+88685018 | MS.gene41659:CDS |
| GATCTTTAGGAAGGATGAGA+GGG | 0.541790 | 3.4:+88685112 | MS.gene41659:CDS |
| CTTGGTCGTGGTAAGATTTG+GGG | 0.544253 | 3.4:+88685326 | MS.gene41659:CDS |
| TTGAGGTATTTGGCTATGAC+TGG | 0.545352 | 3.4:+88684825 | MS.gene41659:CDS |
| TTGAGTTTGGAGTTTACCGT+GGG | 0.545419 | 3.4:-88683983 | None:intergenic |
| GAAACAAATGGTGGCTGCTG+GGG | 0.546643 | 3.4:+88685238 | MS.gene41659:CDS |
| CAATAGAAGGATCTTTAGGA+AGG | 0.547514 | 3.4:+88685103 | MS.gene41659:CDS |
| AAGTAGGGGTTGAAATGTTG+AGG | 0.549591 | 3.4:+88684808 | MS.gene41659:CDS |
| AAGAATAATTTACTTGCGGA+GGG | 0.550763 | 3.4:+88684351 | MS.gene41659:CDS |
| CGGTGAGGATTGCGGCTGCG+AGG | 0.553805 | 3.4:+88684922 | MS.gene41659:CDS |
| TCGAGTAACCGAACCAGCAC+CGG | 0.554153 | 3.4:-88684258 | None:intergenic |
| ATCTTTAGGAAGGATGAGAG+GGG | 0.554644 | 3.4:+88685113 | MS.gene41659:CDS |
| TTGGCACGAGAAAATGCGAT+TGG | 0.565368 | 3.4:+88684669 | MS.gene41659:CDS |
| TCAGGCGTTGAGTTTGACTA+GGG | 0.566469 | 3.4:+88684452 | MS.gene41659:CDS |
| GGAGAAAGAATCTGCTGCAA+TGG | 0.567130 | 3.4:+88685052 | MS.gene41659:CDS |
| AGAGTTTCCACGGTGGAGAG+TGG | 0.573107 | 3.4:+88684327 | MS.gene41659:CDS |
| GGTTCAGACAAACGCTGATA+GGG | 0.573193 | 3.4:-88683729 | None:intergenic |
| GAGTTTCCACGGTGGAGAGT+GGG | 0.574172 | 3.4:+88684328 | MS.gene41659:CDS |
| TATCCAAATTAACCAAAGCA+GGG | 0.575946 | 3.4:-88685163 | None:intergenic |
| ATTTCTCGTTAGAGATCGAA+CGG | 0.576485 | 3.4:-88684115 | None:intergenic |
| TGGCGGAAATAAGACGAGAA+AGG | 0.576753 | 3.4:+88684968 | MS.gene41659:CDS |
| TTTCTATGAGTGAATTGGTG+AGG | 0.582509 | 3.4:-88683750 | None:intergenic |
| GGAGGATTTGGAATATTCAG+TGG | 0.587898 | 3.4:-88683863 | None:intergenic |
| GGTTGGCTTCGTCTGGAACG+GGG | 0.590269 | 3.4:+88684646 | MS.gene41659:CDS |
| TTTGAGTTTGGAGTTTACCG+TGG | 0.593684 | 3.4:-88683984 | None:intergenic |
| GAAGAATAATTTACTTGCGG+AGG | 0.596771 | 3.4:+88684350 | MS.gene41659:CDS |
| GATGTTGGATGGGAAAGGCG+TGG | 0.603804 | 3.4:+88685028 | MS.gene41659:CDS |
| TCTCTGTTAGGGATTTGTCA+AGG | 0.604955 | 3.4:+88684513 | MS.gene41659:CDS |
| GGCGGAACACCAGGTTCACA+AGG | 0.606227 | 3.4:+88684534 | MS.gene41659:CDS |
| GTAAAATTTGGGATTGACAG+TGG | 0.606793 | 3.4:-88683960 | None:intergenic |
| ATAAGACGAGAAAGGAAATG+GGG | 0.610635 | 3.4:+88684976 | MS.gene41659:CDS |
| CTTCACGTTTGGAGAAAGCG+GGG | 0.611057 | 3.4:-88684092 | None:intergenic |
| TAAGACGAGAAAGGAAATGG+GGG | 0.612886 | 3.4:+88684977 | MS.gene41659:CDS |
| TTCACAAGGTTATGCAGCAG+CGG | 0.614157 | 3.4:+88684548 | MS.gene41659:CDS |
| CAGTGGAGAAATCGGTGAGG+TGG | 0.614649 | 3.4:-88683846 | None:intergenic |
| GATTCAGAGTCTTGAAGTAG+GGG | 0.614676 | 3.4:+88684794 | MS.gene41659:CDS |
| TGGGAAGAATAATTTACTTG+CGG | 0.619324 | 3.4:+88684347 | MS.gene41659:CDS |
| CGGAACTACACCTTGCGCGA+CGG | 0.625906 | 3.4:-88684238 | None:intergenic |
| GTTACAATAGCCGTCGCGCA+AGG | 0.626258 | 3.4:+88684228 | MS.gene41659:CDS |
| TGTGGCAAATTTGATTTCGG+AGG | 0.627323 | 3.4:+88684695 | MS.gene41659:CDS |
| AGAGTGAAACGGCGTCGTTG+AGG | 0.630604 | 3.4:-88683933 | None:intergenic |
| AGAAAATGCGATTGGTTGTG+TGG | 0.632842 | 3.4:+88684677 | MS.gene41659:CDS |
| GCTAGAGCGATTGGATCTAG+AGG | 0.633516 | 3.4:+88684480 | MS.gene41659:CDS |
| AGAATAATTTACTTGCGGAG+GGG | 0.633658 | 3.4:+88684352 | MS.gene41659:CDS |
| GAATTTCGTGGAGGAGAATG+CGG | 0.638789 | 3.4:+88684608 | MS.gene41659:CDS |
| TATGCTATGGGTTTGAATGG+CGG | 0.640687 | 3.4:+88684951 | MS.gene41659:CDS |
| GTTGGATGGGAAAGGCGTGG+AGG | 0.641910 | 3.4:+88685031 | MS.gene41659:CDS |
| GAACATCGCAGTCGGTGACG+TGG | 0.642100 | 3.4:-88684041 | None:intergenic |
| TTCACGTTTGGAGAAAGCGG+GGG | 0.645949 | 3.4:-88684091 | None:intergenic |
| TAACGAGAAATCTCATCGCA+CGG | 0.653102 | 3.4:+88684127 | MS.gene41659:CDS |
| AGAGCGATTGGATCTAGAGG+TGG | 0.653759 | 3.4:+88684483 | MS.gene41659:CDS |
| TATGACTGGTCCAATTGATG+AGG | 0.665742 | 3.4:+88684839 | MS.gene41659:CDS |
| ACGGAAGAGAACATCGCAGT+CGG | 0.666690 | 3.4:-88684049 | None:intergenic |
| TAAGAGTGAGTCGATTGCAG+TGG | 0.671105 | 3.4:-88684178 | None:intergenic |
| GACTTGTCGGAAACAAATGG+TGG | 0.684138 | 3.4:+88685229 | MS.gene41659:CDS |
| GTGAAACCAGAACCGAAACA+GGG | 0.684741 | 3.4:-88685193 | None:intergenic |
| CATCGCAGTCGGTGACGTGG+CGG | 0.687454 | 3.4:-88684038 | None:intergenic |
| AATTAAGGAGAATTTCGTGG+AGG | 0.696109 | 3.4:+88684599 | MS.gene41659:CDS |
| ACAGTGGTGAGAGAGTGAAA+CGG | 0.701293 | 3.4:-88683944 | None:intergenic |
| ATTCTTCCCACTCTCCACCG+TGG | 0.707457 | 3.4:-88684334 | None:intergenic |
| TGCGATGTTCTCTTCCGTAG+CGG | 0.716213 | 3.4:+88684054 | MS.gene41659:CDS |
| CTGTTAGGGATTTGTCAAGG+CGG | 0.747669 | 3.4:+88684516 | MS.gene41659:CDS |
| TGAGTTTGGAGTTTACCGTG+GGG | 0.758546 | 3.4:-88683982 | None:intergenic |
| ATTCAGTGGAGAAATCGGTG+AGG | 0.771367 | 3.4:-88683849 | None:intergenic |
| TATTTCGAGAGTTTCCACGG+TGG | 0.826858 | 3.4:+88684320 | MS.gene41659:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GGCTAAGTTTAATGAAATTA+AGG | + | chr3.4:88684584-88684603 | MS.gene41659:CDS | 25.0% |
| ! | TAAAGATCCTTCTATTGAAA+GGG | - | chr3.4:88685100-88685119 | None:intergenic | 25.0% |
| ! | TGAGTGTTTGAAGAATTATT+GGG | + | chr3.4:88684758-88684777 | MS.gene41659:CDS | 25.0% |
| ! | TTGAGTGTTTGAAGAATTAT+TGG | + | chr3.4:88684757-88684776 | MS.gene41659:CDS | 25.0% |
| ! | TTTGAAGAATTATTGGGATT+CGG | + | chr3.4:88684764-88684783 | MS.gene41659:CDS | 25.0% |
| AAAACCAAATGGTCAATCTT+CGG | + | chr3.4:88683799-88683818 | MS.gene41659:CDS | 30.0% | |
| AAATAAGACGAGAAAGGAAA+TGG | + | chr3.4:88684974-88684993 | MS.gene41659:CDS | 30.0% | |
| AAGAATAATTTACTTGCGGA+GGG | + | chr3.4:88684351-88684370 | MS.gene41659:CDS | 30.0% | |
| AATAAGACGAGAAAGGAAAT+GGG | + | chr3.4:88684975-88684994 | MS.gene41659:CDS | 30.0% | |
| CTAAAGATCCTTCTATTGAA+AGG | - | chr3.4:88685101-88685120 | None:intergenic | 30.0% | |
| CTTTCAATAGAAGGATCTTT+AGG | + | chr3.4:88685099-88685118 | MS.gene41659:CDS | 30.0% | |
| CTTTGATTAAGATGTTGGAT+GGG | + | chr3.4:88685018-88685037 | MS.gene41659:CDS | 30.0% | |
| GGTTCAAAGAAATTGTTAGA+TGG | + | chr3.4:88685302-88685321 | MS.gene41659:CDS | 30.0% | |
| GTTGTTGAATCATTTGGTTA+GGG | + | chr3.4:88684380-88684399 | MS.gene41659:CDS | 30.0% | |
| TATCCAAATTAACCAAAGCA+GGG | - | chr3.4:88685166-88685185 | None:intergenic | 30.0% | |
| TCCAACATCTTAATCAAAGA+AGG | - | chr3.4:88685017-88685036 | None:intergenic | 30.0% | |
| TCCATCACTTAAAAACCAAA+TGG | + | chr3.4:88683788-88683807 | MS.gene41659:CDS | 30.0% | |
| TCCTTCTTTGATTAAGATGT+TGG | + | chr3.4:88685013-88685032 | MS.gene41659:CDS | 30.0% | |
| TCTAACAATTTCTTTGAACC+CGG | - | chr3.4:88685302-88685321 | None:intergenic | 30.0% | |
| TCTTTGATTAAGATGTTGGA+TGG | + | chr3.4:88685017-88685036 | MS.gene41659:CDS | 30.0% | |
| TGAAATTAAGGAGAATTTCG+TGG | + | chr3.4:88684596-88684615 | MS.gene41659:CDS | 30.0% | |
| TGGGAAGAATAATTTACTTG+CGG | + | chr3.4:88684347-88684366 | MS.gene41659:CDS | 30.0% | |
| TGTTGTTGAATCATTTGGTT+AGG | + | chr3.4:88684379-88684398 | MS.gene41659:CDS | 30.0% | |
| TTATCCAAATTAACCAAAGC+AGG | - | chr3.4:88685167-88685186 | None:intergenic | 30.0% | |
| ! | AAGAAATTGTTAGATGGACT+TGG | + | chr3.4:88685308-88685327 | MS.gene41659:CDS | 30.0% |
| ! | GTTGTTGTTGTTGAATCATT+TGG | + | chr3.4:88684374-88684393 | MS.gene41659:CDS | 30.0% |
| ! | TTCGTTTTCTATGAGTGAAT+TGG | - | chr3.4:88683758-88683777 | None:intergenic | 30.0% |
| ! | TTGTGTGGCAAATTTGATTT+CGG | + | chr3.4:88684692-88684711 | MS.gene41659:CDS | 30.0% |
| !! | AATGCGGTTATTGTTTTGTT+AGG | + | chr3.4:88684624-88684643 | MS.gene41659:CDS | 30.0% |
| !! | ATGCGGTTATTGTTTTGTTA+GGG | + | chr3.4:88684625-88684644 | MS.gene41659:CDS | 30.0% |
| !! | GTTGAACTGTGATGTTTTAA+CGG | + | chr3.4:88684902-88684921 | MS.gene41659:CDS | 30.0% |
| !!! | ACCATTTGGTTTTTAAGTGA+TGG | - | chr3.4:88683792-88683811 | None:intergenic | 30.0% |
| !!! | TTTGGTTTTTAAGTGATGGA+CGG | - | chr3.4:88683788-88683807 | None:intergenic | 30.0% |
| AATTAAGGAGAATTTCGTGG+AGG | + | chr3.4:88684599-88684618 | MS.gene41659:CDS | 35.0% | |
| AGAATAATTTACTTGCGGAG+GGG | + | chr3.4:88684352-88684371 | MS.gene41659:CDS | 35.0% | |
| ATAAGACGAGAAAGGAAATG+GGG | + | chr3.4:88684976-88684995 | MS.gene41659:CDS | 35.0% | |
| ATGATTCAGAGTCTTGAAGT+AGG | + | chr3.4:88684792-88684811 | MS.gene41659:CDS | 35.0% | |
| ATTAAGATGTTGGATGGGAA+AGG | + | chr3.4:88685023-88685042 | MS.gene41659:CDS | 35.0% | |
| ATTTCTCGTTAGAGATCGAA+CGG | - | chr3.4:88684118-88684137 | None:intergenic | 35.0% | |
| CCAACTAAAACCTCATCAAT+TGG | - | chr3.4:88684852-88684871 | None:intergenic | 35.0% | |
| GAAGAATAATTTACTTGCGG+AGG | + | chr3.4:88684350-88684369 | MS.gene41659:CDS | 35.0% | |
| GGAATATTCAGTGGAGAAAT+CGG | - | chr3.4:88683857-88683876 | None:intergenic | 35.0% | |
| GGATAAGAAATACCCTGTTT+CGG | + | chr3.4:88685181-88685200 | MS.gene41659:CDS | 35.0% | |
| GTTTATGCTATGGGTTTGAA+TGG | + | chr3.4:88684948-88684967 | MS.gene41659:CDS | 35.0% | |
| TGATTCAGAGTCTTGAAGTA+GGG | + | chr3.4:88684793-88684812 | MS.gene41659:CDS | 35.0% | |
| TTTACCGTGGGGTAAAATTT+GGG | - | chr3.4:88683974-88683993 | None:intergenic | 35.0% | |
| TTTCTATGAGTGAATTGGTG+AGG | - | chr3.4:88683753-88683772 | None:intergenic | 35.0% | |
| ! | CAATAGAAGGATCTTTAGGA+AGG | + | chr3.4:88685103-88685122 | MS.gene41659:CDS | 35.0% |
| ! | GAATCATTTGGTTAGGGTTT+TGG | + | chr3.4:88684386-88684405 | MS.gene41659:CDS | 35.0% |
| ! | GGTTGAAATGTTGAGGTATT+TGG | + | chr3.4:88684815-88684834 | MS.gene41659:CDS | 35.0% |
| ! | GTAAAATTTGGGATTGACAG+TGG | - | chr3.4:88683963-88683982 | None:intergenic | 35.0% |
| ! | TGTTTTCTCCTTCATATCAG+AGG | - | chr3.4:88684292-88684311 | None:intergenic | 35.0% |
| ! | TTTTGCATTCGAAGACTTGT+CGG | + | chr3.4:88685216-88685235 | MS.gene41659:CDS | 35.0% |
| !! | AATCGATTTGGCTTTGAGTT+TGG | - | chr3.4:88683999-88684018 | None:intergenic | 35.0% |
| !! | CCAATTGATGAGGTTTTAGT+TGG | + | chr3.4:88684849-88684868 | MS.gene41659:CDS | 35.0% |
| !! | GGTTATTGTTTTGTTAGGGT+TGG | + | chr3.4:88684629-88684648 | MS.gene41659:CDS | 35.0% |
| !!! | ATGAGGTTTTAGTTGGTGAA+GGG | + | chr3.4:88684856-88684875 | MS.gene41659:CDS | 35.0% |
| !!! | TTTGGTTAGGGTTTTGGATT+CGG | + | chr3.4:88684392-88684411 | MS.gene41659:CDS | 35.0% |
| AAGTAGGGGTTGAAATGTTG+AGG | + | chr3.4:88684808-88684827 | MS.gene41659:CDS | 40.0% | |
| ACTTGGTCGTGGTAAGATTT+GGG | + | chr3.4:88685325-88685344 | MS.gene41659:CDS | 40.0% | |
| GAACCCTGCTTTGGTTAATT+TGG | + | chr3.4:88685160-88685179 | MS.gene41659:CDS | 40.0% | |
| GAAGACTTGTCGGAAACAAA+TGG | + | chr3.4:88685226-88685245 | MS.gene41659:CDS | 40.0% | |
| GATTCAGAGTCTTGAAGTAG+GGG | + | chr3.4:88684794-88684813 | MS.gene41659:CDS | 40.0% | |
| GTGGAATTTCGTCTCTGTTA+GGG | + | chr3.4:88684502-88684521 | MS.gene41659:CDS | 40.0% | |
| GTTTACCGTGGGGTAAAATT+TGG | - | chr3.4:88683975-88683994 | None:intergenic | 40.0% | |
| TAACCAAAGCAGGGTTCAAT+AGG | - | chr3.4:88685157-88685176 | None:intergenic | 40.0% | |
| TAACGAGAAATCTCATCGCA+CGG | + | chr3.4:88684127-88684146 | MS.gene41659:CDS | 40.0% | |
| TAAGACGAGAAAGGAAATGG+GGG | + | chr3.4:88684977-88684996 | MS.gene41659:CDS | 40.0% | |
| TATGCTATGGGTTTGAATGG+CGG | + | chr3.4:88684951-88684970 | MS.gene41659:CDS | 40.0% | |
| TCTCTGTTAGGGATTTGTCA+AGG | + | chr3.4:88684513-88684532 | MS.gene41659:CDS | 40.0% | |
| TGGCGATAAGTGAATCGATT+TGG | - | chr3.4:88684011-88684030 | None:intergenic | 40.0% | |
| ! | AGAAAATGCGATTGGTTGTG+TGG | + | chr3.4:88684677-88684696 | MS.gene41659:CDS | 40.0% |
| ! | ATCTTTAGGAAGGATGAGAG+GGG | + | chr3.4:88685113-88685132 | MS.gene41659:CDS | 40.0% |
| ! | CAATCCCAAATTTTACCCCA+CGG | + | chr3.4:88683967-88683986 | MS.gene41659:CDS | 40.0% |
| ! | GATCTTTAGGAAGGATGAGA+GGG | + | chr3.4:88685112-88685131 | MS.gene41659:CDS | 40.0% |
| ! | GGAGGATTTGGAATATTCAG+TGG | - | chr3.4:88683866-88683885 | None:intergenic | 40.0% |
| ! | TATGACTGGTCCAATTGATG+AGG | + | chr3.4:88684839-88684858 | MS.gene41659:CDS | 40.0% |
| ! | TGTGGCAAATTTGATTTCGG+AGG | + | chr3.4:88684695-88684714 | MS.gene41659:CDS | 40.0% |
| ! | TTGAGGTATTTGGCTATGAC+TGG | + | chr3.4:88684825-88684844 | MS.gene41659:CDS | 40.0% |
| ! | TTGAGTTTGGAGTTTACCGT+GGG | - | chr3.4:88683986-88684005 | None:intergenic | 40.0% |
| ! | TTTGAGTTTGGAGTTTACCG+TGG | - | chr3.4:88683987-88684006 | None:intergenic | 40.0% |
| !! | CTTGTTGAGTTGGATATTCC+GGG | + | chr3.4:88685281-88685300 | MS.gene41659:CDS | 40.0% |
| !! | GCTTGTTGAGTTGGATATTC+CGG | + | chr3.4:88685280-88685299 | MS.gene41659:CDS | 40.0% |
| !! | TAGTTGGTGAAGGGTTTGTT+GGG | + | chr3.4:88684865-88684884 | MS.gene41659:CDS | 40.0% |
| !! | TGCTATTTCGAGAGTTTCCA+CGG | + | chr3.4:88684317-88684336 | MS.gene41659:CDS | 40.0% |
| !! | TTAGTTGGTGAAGGGTTTGT+TGG | + | chr3.4:88684864-88684883 | MS.gene41659:CDS | 40.0% |
| !!! | ACTGTGATGTTTTAACGGTG+AGG | + | chr3.4:88684907-88684926 | MS.gene41659:CDS | 40.0% |
| !!! | GATGAGGTTTTAGTTGGTGA+AGG | + | chr3.4:88684855-88684874 | MS.gene41659:CDS | 40.0% |
| !!! | GTTTTTAAGTGATGGACGGT+GGG | - | chr3.4:88683784-88683803 | None:intergenic | 40.0% |
| !!! | TGTTTTAACGGTGAGGATTG+CGG | + | chr3.4:88684914-88684933 | MS.gene41659:CDS | 40.0% |
| !!! | TTGGTTAGGGTTTTGGATTC+GGG | + | chr3.4:88684393-88684412 | MS.gene41659:CDS | 40.0% |
| !!! | TTTTTAAGTGATGGACGGTG+GGG | - | chr3.4:88683783-88683802 | None:intergenic | 40.0% |
| ACAGTGGTGAGAGAGTGAAA+CGG | - | chr3.4:88683947-88683966 | None:intergenic | 45.0% | |
| AGAAAGGAAATGGGGGAATG+TGG | + | chr3.4:88684984-88685003 | MS.gene41659:CDS | 45.0% | |
| AGGTTCAGACAAACGCTGAT+AGG | - | chr3.4:88683733-88683752 | None:intergenic | 45.0% | |
| AGTGAAACCAGAACCGAAAC+AGG | - | chr3.4:88685197-88685216 | None:intergenic | 45.0% | |
| ATTCAGTGGAGAAATCGGTG+AGG | - | chr3.4:88683852-88683871 | None:intergenic | 45.0% | |
| CTGTTAGGGATTTGTCAAGG+CGG | + | chr3.4:88684516-88684535 | MS.gene41659:CDS | 45.0% | |
| CTTGGTCGTGGTAAGATTTG+GGG | + | chr3.4:88685326-88685345 | MS.gene41659:CDS | 45.0% | |
| GAAAGCTTGTATTGCGCTTC+AGG | + | chr3.4:88684434-88684453 | MS.gene41659:CDS | 45.0% | |
| GAAAGGAAATGGGGGAATGT+GGG | + | chr3.4:88684985-88685004 | MS.gene41659:CDS | 45.0% | |
| GAAATACCCTGTTTCGGTTC+TGG | + | chr3.4:88685187-88685206 | MS.gene41659:CDS | 45.0% | |
| GAATTTCGTGGAGGAGAATG+CGG | + | chr3.4:88684608-88684627 | MS.gene41659:CDS | 45.0% | |
| GACTCCGAAGATTGACCATT+TGG | - | chr3.4:88683806-88683825 | None:intergenic | 45.0% | |
| GACTTGTCGGAAACAAATGG+TGG | + | chr3.4:88685229-88685248 | MS.gene41659:CDS | 45.0% | |
| GGAGAAAGAATCTGCTGCAA+TGG | + | chr3.4:88685052-88685071 | MS.gene41659:CDS | 45.0% | |
| GGTGGAATTTCGTCTCTGTT+AGG | + | chr3.4:88684501-88684520 | MS.gene41659:CDS | 45.0% | |
| GGTTCAGACAAACGCTGATA+GGG | - | chr3.4:88683732-88683751 | None:intergenic | 45.0% | |
| GTGAAACCAGAACCGAAACA+GGG | - | chr3.4:88685196-88685215 | None:intergenic | 45.0% | |
| TAAGAGTGAGTCGATTGCAG+TGG | - | chr3.4:88684181-88684200 | None:intergenic | 45.0% | |
| TATTTCGAGAGTTTCCACGG+TGG | + | chr3.4:88684320-88684339 | MS.gene41659:CDS | 45.0% | |
| TCACCTATTGAACCCTGCTT+TGG | + | chr3.4:88685151-88685170 | MS.gene41659:CDS | 45.0% | |
| TGCAGCACCCTTTCAATAGA+AGG | + | chr3.4:88685090-88685109 | MS.gene41659:CDS | 45.0% | |
| TGGCGGAAATAAGACGAGAA+AGG | + | chr3.4:88684968-88684987 | MS.gene41659:CDS | 45.0% | |
| TTCACAAGGTTATGCAGCAG+CGG | + | chr3.4:88684548-88684567 | MS.gene41659:CDS | 45.0% | |
| TTCCAGCTCCTCTGATATGA+AGG | + | chr3.4:88684281-88684300 | MS.gene41659:CDS | 45.0% | |
| TTGGCACGAGAAAATGCGAT+TGG | + | chr3.4:88684669-88684688 | MS.gene41659:CDS | 45.0% | |
| ! | AGAAATCGGTGAGGTGGTTT+TGG | - | chr3.4:88683843-88683862 | None:intergenic | 45.0% |
| ! | GACTTGGTCGTGGTAAGATT+TGG | + | chr3.4:88685324-88685343 | MS.gene41659:CDS | 45.0% |
| ! | GGATCTTTAGGAAGGATGAG+AGG | + | chr3.4:88685111-88685130 | MS.gene41659:CDS | 45.0% |
| ! | TGAGTTTGGAGTTTACCGTG+GGG | - | chr3.4:88683985-88684004 | None:intergenic | 45.0% |
| ! | TTCGGAGGATGAGAGTATGA+GGG | + | chr3.4:88684710-88684729 | MS.gene41659:CDS | 45.0% |
| ! | TTGTTAGATGGACTTGGTCG+TGG | + | chr3.4:88685314-88685333 | MS.gene41659:CDS | 45.0% |
| ! | TTTCGGAGGATGAGAGTATG+AGG | + | chr3.4:88684709-88684728 | MS.gene41659:CDS | 45.0% |
| !! | GGATGAGAGTATGAGGGTTT+TGG | + | chr3.4:88684716-88684735 | MS.gene41659:CDS | 45.0% |
| !! | TACGCAGAAGCTTGTTGAGT+TGG | + | chr3.4:88685271-88685290 | MS.gene41659:CDS | 45.0% |
| !! | TCAGGCGTTGAGTTTGACTA+GGG | + | chr3.4:88684452-88684471 | MS.gene41659:CDS | 45.0% |
| !! | TTCAGGCGTTGAGTTTGACT+AGG | + | chr3.4:88684451-88684470 | MS.gene41659:CDS | 45.0% |
| !!! | GGTTTTTAAGTGATGGACGG+TGG | - | chr3.4:88683785-88683804 | None:intergenic | 45.0% |
| !!! | TATGAGGGTTTTGGCTGTGA+AGG | + | chr3.4:88684725-88684744 | MS.gene41659:CDS | 45.0% |
| ACGGAAGAGAACATCGCAGT+CGG | - | chr3.4:88684052-88684071 | None:intergenic | 50.0% | |
| AGAGCGATTGGATCTAGAGG+TGG | + | chr3.4:88684483-88684502 | MS.gene41659:CDS | 50.0% | |
| AGATCGAACGGCTTCACGTT+TGG | - | chr3.4:88684106-88684125 | None:intergenic | 50.0% | |
| AGGGACAATGCTAGAGCGAT+TGG | + | chr3.4:88684471-88684490 | MS.gene41659:CDS | 50.0% | |
| ATCTGCTGCAATGGCGTTGT+CGG | + | chr3.4:88685061-88685080 | MS.gene41659:CDS | 50.0% | |
| ATTTGTCAAGGCGGAACACC+AGG | + | chr3.4:88684525-88684544 | MS.gene41659:CDS | 50.0% | |
| CTCATCGCACGGTTGCAAAT+CGG | + | chr3.4:88684138-88684157 | MS.gene41659:CDS | 50.0% | |
| CTCCTTCATATCAGAGGAGC+TGG | - | chr3.4:88684286-88684305 | None:intergenic | 50.0% | |
| CTTCACGTTTGGAGAAAGCG+GGG | - | chr3.4:88684095-88684114 | None:intergenic | 50.0% | |
| GAAACAAATGGTGGCTGCTG+GGG | + | chr3.4:88685238-88685257 | MS.gene41659:CDS | 50.0% | |
| GCGAGGGCTGTTTATGCTAT+GGG | + | chr3.4:88684939-88684958 | MS.gene41659:CDS | 50.0% | |
| GCTAGAGCGATTGGATCTAG+AGG | + | chr3.4:88684480-88684499 | MS.gene41659:CDS | 50.0% | |
| GCTGCATAACCTTGTGAACC+TGG | - | chr3.4:88684546-88684565 | None:intergenic | 50.0% | |
| GCTTCACGTTTGGAGAAAGC+GGG | - | chr3.4:88684096-88684115 | None:intergenic | 50.0% | |
| GGAAACAAATGGTGGCTGCT+GGG | + | chr3.4:88685237-88685256 | MS.gene41659:CDS | 50.0% | |
| GGCTTCACGTTTGGAGAAAG+CGG | - | chr3.4:88684097-88684116 | None:intergenic | 50.0% | |
| TGCGAGGGCTGTTTATGCTA+TGG | + | chr3.4:88684938-88684957 | MS.gene41659:CDS | 50.0% | |
| TGCGATGTTCTCTTCCGTAG+CGG | + | chr3.4:88684054-88684073 | MS.gene41659:CDS | 50.0% | |
| TTCACGTTTGGAGAAAGCGG+GGG | - | chr3.4:88684094-88684113 | None:intergenic | 50.0% | |
| ! | GTTATGCAGCAGCGGTTTTG+AGG | + | chr3.4:88684556-88684575 | MS.gene41659:CDS | 50.0% |
| !! | TGAGTTGGTGGTGGAGGATT+TGG | - | chr3.4:88683878-88683897 | None:intergenic | 50.0% |
| !! | TGGTGAAGGGTTTGTTGGGA+GGG | + | chr3.4:88684869-88684888 | MS.gene41659:CDS | 50.0% |
| !! | TTGGTGAAGGGTTTGTTGGG+AGG | + | chr3.4:88684868-88684887 | MS.gene41659:CDS | 50.0% |
| !! | TTGTTAGGGTTGGCTTCGTC+TGG | + | chr3.4:88684639-88684658 | MS.gene41659:CDS | 50.0% |
| !!! | AGCAGCGGTTTTGAGGAATC+TGG | + | chr3.4:88684563-88684582 | MS.gene41659:CDS | 50.0% |
| !!! | AGGGTTTTGGATTCGGGAAG+TGG | + | chr3.4:88684399-88684418 | MS.gene41659:CDS | 50.0% |
| !!! | AGGGTTTTGGCTGTGAAGGA+AGG | + | chr3.4:88684729-88684748 | MS.gene41659:CDS | 50.0% |
| !!! | GGTGAGGTGGTTTTGGAGTT+GGG | - | chr3.4:88683836-88683855 | None:intergenic | 50.0% |
| !!! | GTTTTGGCTGTGAAGGAAGG+TGG | + | chr3.4:88684732-88684751 | MS.gene41659:CDS | 50.0% |
| AAACGGCGTCGTTGAGGGTT+TGG | - | chr3.4:88683930-88683949 | None:intergenic | 55.0% | |
| AGAGTGAAACGGCGTCGTTG+AGG | - | chr3.4:88683936-88683955 | None:intergenic | 55.0% | |
| AGAGTTTCCACGGTGGAGAG+TGG | + | chr3.4:88684327-88684346 | MS.gene41659:CDS | 55.0% | |
| ATTCTTCCCACTCTCCACCG+TGG | - | chr3.4:88684337-88684356 | None:intergenic | 55.0% | |
| ATTGCAGTGGCGCGTGATTC+TGG | - | chr3.4:88684168-88684187 | None:intergenic | 55.0% | |
| CAGTGGAGAAATCGGTGAGG+TGG | - | chr3.4:88683849-88683868 | None:intergenic | 55.0% | |
| CGGAAACAAATGGTGGCTGC+TGG | + | chr3.4:88685236-88685255 | MS.gene41659:CDS | 55.0% | |
| GAGGTGAAGGGAGAGTGAGT+TGG | - | chr3.4:88683893-88683912 | None:intergenic | 55.0% | |
| GAGTGAAACGGCGTCGTTGA+GGG | - | chr3.4:88683935-88683954 | None:intergenic | 55.0% | |
| GAGTTTCCACGGTGGAGAGT+GGG | + | chr3.4:88684328-88684347 | MS.gene41659:CDS | 55.0% | |
| GATGGAGTGGAGGAGGTGAA+GGG | - | chr3.4:88683905-88683924 | None:intergenic | 55.0% | |
| GATGTTGGATGGGAAAGGCG+TGG | + | chr3.4:88685028-88685047 | MS.gene41659:CDS | 55.0% | |
| GTCGTTGAGGGTTTGGAGGA+TGG | - | chr3.4:88683923-88683942 | None:intergenic | 55.0% | |
| GTTACAATAGCCGTCGCGCA+AGG | + | chr3.4:88684228-88684247 | MS.gene41659:CDS | 55.0% | |
| TCGAGTAACCGAACCAGCAC+CGG | - | chr3.4:88684261-88684280 | None:intergenic | 55.0% | |
| TGAGGGTTTGGAGGATGGAG+TGG | - | chr3.4:88683918-88683937 | None:intergenic | 55.0% | |
| TTTGGAGGATGGAGTGGAGG+AGG | - | chr3.4:88683912-88683931 | None:intergenic | 55.0% | |
| ! | GTGAAGGGAGAGTGAGTTGG+TGG | - | chr3.4:88683890-88683909 | None:intergenic | 55.0% |
| !! | AAGGGAGAGTGAGTTGGTGG+TGG | - | chr3.4:88683887-88683906 | None:intergenic | 55.0% |
| !! | AGGGTTGGCTTCGTCTGGAA+CGG | + | chr3.4:88684644-88684663 | MS.gene41659:CDS | 55.0% |
| !! | GGGTTTGTTGGGAGGGTGAT+TGG | + | chr3.4:88684876-88684895 | MS.gene41659:CDS | 55.0% |
| !! | GTGTAGTTCCGGTGCTGGTT+CGG | + | chr3.4:88684250-88684269 | MS.gene41659:CDS | 55.0% |
| !!! | CGGTGAGGTGGTTTTGGAGT+TGG | - | chr3.4:88683837-88683856 | None:intergenic | 55.0% |
| AGAAAGCGGGGGTTTCGAGG+AGG | - | chr3.4:88684083-88684102 | None:intergenic | 60.0% | |
| CGGAACTACACCTTGCGCGA+CGG | - | chr3.4:88684241-88684260 | None:intergenic | 60.0% | |
| CGTCGCGCAAGGTGTAGTTC+CGG | + | chr3.4:88684239-88684258 | MS.gene41659:CDS | 60.0% | |
| GAACATCGCAGTCGGTGACG+TGG | - | chr3.4:88684044-88684063 | None:intergenic | 60.0% | |
| GCAAGGTGTAGTTCCGGTGC+TGG | + | chr3.4:88684245-88684264 | MS.gene41659:CDS | 60.0% | |
| GGATGGAGTGGAGGAGGTGA+AGG | - | chr3.4:88683906-88683925 | None:intergenic | 60.0% | |
| GGCGGAACACCAGGTTCACA+AGG | + | chr3.4:88684534-88684553 | MS.gene41659:CDS | 60.0% | |
| GGGTTTGGAGGATGGAGTGG+AGG | - | chr3.4:88683915-88683934 | None:intergenic | 60.0% | |
| TGGAGAAAGCGGGGGTTTCG+AGG | - | chr3.4:88684086-88684105 | None:intergenic | 60.0% | |
| TTTCGAGGAGGAGGCCGCTA+CGG | - | chr3.4:88684071-88684090 | None:intergenic | 60.0% | |
| ! | GTTGGATGGGAAAGGCGTGG+AGG | + | chr3.4:88685031-88685050 | MS.gene41659:CDS | 60.0% |
| !! | GGAGAGTGAGTTGGTGGTGG+AGG | - | chr3.4:88683884-88683903 | None:intergenic | 60.0% |
| !! | GGGTTGGCTTCGTCTGGAAC+GGG | + | chr3.4:88684645-88684664 | MS.gene41659:CDS | 60.0% |
| !! | GGTTGGCTTCGTCTGGAACG+GGG | + | chr3.4:88684646-88684665 | MS.gene41659:CDS | 60.0% |
| AAGCGGGGGTTTCGAGGAGG+AGG | - | chr3.4:88684080-88684099 | None:intergenic | 65.0% | |
| CATCGCAGTCGGTGACGTGG+CGG | - | chr3.4:88684041-88684060 | None:intergenic | 65.0% | |
| CGGCGTCGTTGAGGGTTTGG+AGG | - | chr3.4:88683927-88683946 | None:intergenic | 65.0% | |
| GGTGAGGATTGCGGCTGCGA+GGG | + | chr3.4:88684923-88684942 | MS.gene41659:CDS | 65.0% | |
| ! | GGCTTCGTCTGGAACGGGGT+TGG | + | chr3.4:88684650-88684669 | MS.gene41659:CDS | 65.0% |
| CGGTGAGGATTGCGGCTGCG+AGG | + | chr3.4:88684922-88684941 | MS.gene41659:CDS | 70.0% | |
| GGTGACGTGGCGGTGGAGAG+TGG | - | chr3.4:88684031-88684050 | None:intergenic | 70.0% | |
| CGCAGTCGGTGACGTGGCGG+TGG | - | chr3.4:88684038-88684057 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 88683700 | 88685367 | 88683700 | ID=MS.gene41659 |
| chr3.4 | mRNA | 88683700 | 88685367 | 88683700 | ID=MS.gene41659.t1;Parent=MS.gene41659 |
| chr3.4 | exon | 88683700 | 88685367 | 88683700 | ID=MS.gene41659.t1.exon1;Parent=MS.gene41659.t1 |
| chr3.4 | CDS | 88683700 | 88685367 | 88683700 | ID=cds.MS.gene41659.t1;Parent=MS.gene41659.t1 |
| Gene Sequence |
| Protein sequence |
