Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32213.t1 | XP_003608254.1 | 98.3 | 577 | 10 | 0 | 1 | 577 | 1 | 577 | 0.00E+00 | 1094 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32213.t1 | G7JRW0 | 98.3 | 577 | 10 | 0 | 1 | 577 | 1 | 577 | 0.0e+00 | 1094.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052564 | MS.gene32213 | 0.986589 | 2.69E-167 | -1.69E-46 |
| MS.gene052565 | MS.gene32213 | 0.988978 | 3.44E-176 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019466 | MS.gene32213 | PPI |
| MS.gene52172 | MS.gene32213 | PPI |
| MS.gene42235 | MS.gene32213 | PPI |
| MS.gene41659 | MS.gene32213 | PPI |
| MS.gene055531 | MS.gene32213 | PPI |
| MS.gene013180 | MS.gene32213 | PPI |
| MS.gene36899 | MS.gene32213 | PPI |
| MS.gene06253 | MS.gene32213 | PPI |
| MS.gene023795 | MS.gene32213 | PPI |
| MS.gene27647 | MS.gene32213 | PPI |
| MS.gene57486 | MS.gene32213 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32213.t1 | MTR_4g091320 | 98.267 | 577 | 10 | 0 | 1 | 577 | 1 | 577 | 0.0 | 1151 |
| MS.gene32213.t1 | MTR_4g007850 | 90.683 | 161 | 12 | 1 | 417 | 577 | 365 | 522 | 1.53e-92 | 294 |
| MS.gene32213.t1 | MTR_8g032570 | 31.625 | 566 | 336 | 18 | 27 | 572 | 48 | 582 | 1.75e-67 | 229 |
| MS.gene32213.t1 | MTR_8g032570 | 31.625 | 566 | 336 | 18 | 27 | 572 | 25 | 559 | 2.08e-67 | 229 |
| MS.gene32213.t1 | MTR_7g076220 | 30.526 | 570 | 345 | 15 | 22 | 570 | 17 | 556 | 3.04e-65 | 223 |
| MS.gene32213.t1 | MTR_3g098730 | 29.050 | 537 | 356 | 14 | 38 | 567 | 29 | 547 | 2.00e-45 | 169 |
| MS.gene32213.t1 | MTR_1g018180 | 23.318 | 223 | 165 | 3 | 201 | 423 | 103 | 319 | 7.40e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32213.t1 | AT1G61350 | 60.917 | 545 | 203 | 6 | 40 | 577 | 32 | 573 | 0.0 | 645 |
| MS.gene32213.t1 | AT2G45720 | 31.449 | 566 | 339 | 15 | 22 | 572 | 20 | 551 | 2.05e-69 | 234 |
| MS.gene32213.t1 | AT2G45720 | 31.449 | 566 | 339 | 15 | 22 | 572 | 20 | 551 | 2.05e-69 | 234 |
| MS.gene32213.t1 | AT2G45720 | 31.449 | 566 | 339 | 15 | 22 | 572 | 20 | 551 | 2.05e-69 | 234 |
| MS.gene32213.t1 | AT2G45720 | 31.449 | 566 | 339 | 15 | 22 | 572 | 20 | 551 | 2.05e-69 | 234 |
| MS.gene32213.t1 | AT2G45720 | 31.449 | 566 | 339 | 15 | 22 | 572 | 20 | 551 | 2.05e-69 | 234 |
| MS.gene32213.t1 | AT5G50900 | 31.588 | 554 | 354 | 12 | 23 | 567 | 11 | 548 | 1.97e-62 | 215 |
| MS.gene32213.t1 | AT1G01830 | 28.445 | 566 | 362 | 15 | 22 | 572 | 36 | 573 | 9.26e-59 | 206 |
| MS.gene32213.t1 | AT1G01830 | 28.445 | 566 | 362 | 15 | 22 | 572 | 36 | 573 | 9.26e-59 | 206 |
| MS.gene32213.t1 | AT1G01830 | 28.445 | 566 | 362 | 15 | 22 | 572 | 36 | 573 | 9.26e-59 | 206 |
| MS.gene32213.t1 | AT2G05810 | 29.853 | 546 | 358 | 16 | 38 | 571 | 40 | 572 | 1.24e-52 | 189 |
| MS.gene32213.t1 | AT2G05810 | 29.853 | 546 | 358 | 16 | 38 | 571 | 40 | 572 | 1.24e-52 | 189 |
| MS.gene32213.t1 | AT4G16490 | 24.451 | 319 | 217 | 8 | 143 | 447 | 157 | 465 | 7.80e-12 | 68.2 |
Find 131 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCTGAATTTCCCTCTTC+TGG | 0.157688 | 4.4:+22614192 | None:intergenic |
| CGCACCTTTGATCCGGGTTT+TGG | 0.178046 | 4.4:-22614982 | MS.gene32213:CDS |
| ACAAACCTCTTTCTATTTCT+AGG | 0.200258 | 4.4:+22614258 | None:intergenic |
| TGAGGAGGTTAAGAGGTTTA+TGG | 0.200986 | 4.4:-22614769 | MS.gene32213:CDS |
| TTGGATTGTGGGAGTGAGTT+GGG | 0.213740 | 4.4:-22614963 | MS.gene32213:CDS |
| AAAGTGGCATTTAGATTATC+TGG | 0.248155 | 4.4:-22614411 | MS.gene32213:CDS |
| ATTTGGTTGGTCCTGCTTGT+GGG | 0.301326 | 4.4:-22614815 | MS.gene32213:CDS |
| TCAGGGTCTTCGCCGGAAAA+TGG | 0.303092 | 4.4:-22615592 | MS.gene32213:CDS |
| TTGCCGACTCCGGCGAGCTT+TGG | 0.323964 | 4.4:-22615651 | MS.gene32213:CDS |
| TGAAGTTTCGATTCAAGAAT+TGG | 0.324307 | 4.4:-22614439 | MS.gene32213:CDS |
| ATCGAAAGAGGAAGCAATTC+AGG | 0.325278 | 4.4:-22614706 | MS.gene32213:CDS |
| GGATAATGCTTGGGCTGTTT+CGG | 0.325581 | 4.4:-22614895 | MS.gene32213:CDS |
| GCAATTCAGGTGAACTCAAT+TGG | 0.339387 | 4.4:-22614693 | MS.gene32213:CDS |
| GAGGATGAAGATTGGTGATT+TGG | 0.340567 | 4.4:-22615222 | MS.gene32213:CDS |
| TTTCTCTTACGCTCTCGATC+AGG | 0.347009 | 4.4:-22615610 | MS.gene32213:CDS |
| AAGGTTGTTTGTGTTGTTGC+TGG | 0.349484 | 4.4:-22615047 | MS.gene32213:CDS |
| TTCGAAGAATATGACCATTT+CGG | 0.350085 | 4.4:+22614579 | None:intergenic |
| GATGTAGTTCATGTTCTTGT+TGG | 0.350353 | 4.4:-22615113 | MS.gene32213:CDS |
| ATGCTGTGTCGACGTTTATC+AGG | 0.351926 | 4.4:-22614737 | MS.gene32213:CDS |
| GATCCAGAAGAGGGAAATTC+AGG | 0.354609 | 4.4:-22614195 | MS.gene32213:CDS |
| TTCATTCAGAATATTGCCTT+TGG | 0.362418 | 4.4:-22614669 | MS.gene32213:CDS |
| TGATGAATGTAAAGGGGATT+TGG | 0.369016 | 4.4:-22614832 | MS.gene32213:CDS |
| GATGAAATTGACGGAGAATT+CGG | 0.371164 | 4.4:-22614916 | MS.gene32213:CDS |
| CATTGCTTTCTTAGCTTCTT+CGG | 0.371612 | 4.4:+22614383 | None:intergenic |
| TTTGGATTGTGGGAGTGAGT+TGG | 0.372760 | 4.4:-22614964 | MS.gene32213:CDS |
| GGTTAAGAGGTTTATGGTTG+AGG | 0.384772 | 4.4:-22614763 | MS.gene32213:CDS |
| GATAAATTCTGCCATAAAAC+CGG | 0.390006 | 4.4:+22614353 | None:intergenic |
| GTGTTATCGCACCTTTGATC+CGG | 0.390866 | 4.4:-22614989 | MS.gene32213:CDS |
| AGGATGAAGATTGGTGATTT+GGG | 0.392679 | 4.4:-22615221 | MS.gene32213:CDS |
| ATCATTTGAAGTTCGCGAAA+TGG | 0.400579 | 4.4:-22614313 | MS.gene32213:CDS |
| CAAGCTTGAAGAGCTTCATT+CGG | 0.407539 | 4.4:-22615555 | MS.gene32213:CDS |
| GCTTGGGCTGTTTCGGCTCA+TGG | 0.409210 | 4.4:-22614888 | MS.gene32213:CDS |
| GGTGAAGGAGTGTCACGATC+TGG | 0.410395 | 4.4:-22615456 | MS.gene32213:CDS |
| GATTTGGTTGGTCCTGCTTG+TGG | 0.412391 | 4.4:-22614816 | MS.gene32213:CDS |
| CTTTCGGAGATTTATAGAAC+GGG | 0.416233 | 4.4:-22615338 | MS.gene32213:CDS |
| TTGCTATATTATGTTCGAAA+TGG | 0.417702 | 4.4:-22614462 | MS.gene32213:CDS |
| TGCGTTGATTTCTCGTATAG+TGG | 0.420344 | 4.4:-22615425 | MS.gene32213:CDS |
| CGGAGAATTCGGATAATGCT+TGG | 0.427171 | 4.4:-22614905 | MS.gene32213:CDS |
| TGGTTTAGCGAAGAAGCTTT+CGG | 0.433272 | 4.4:-22615354 | MS.gene32213:CDS |
| CGGCGTTGTTGAATATTTGT+GGG | 0.439542 | 4.4:-22614857 | MS.gene32213:CDS |
| ATGTAGTTCATGTTCTTGTT+GGG | 0.447382 | 4.4:-22615112 | MS.gene32213:CDS |
| TGAGGATGAGAAGTATGTTA+AGG | 0.450602 | 4.4:-22615156 | MS.gene32213:CDS |
| GCCGCCGAGAATAGTGATTC+CGG | 0.451485 | 4.4:-22615524 | MS.gene32213:CDS |
| CCTTTGGAGATGAGTTGGTT+AGG | 0.452790 | 4.4:-22614653 | MS.gene32213:CDS |
| GGCACTCTCTGGTATGGTCT+TGG | 0.458623 | 4.4:-22614283 | MS.gene32213:CDS |
| CTCGCCGGAATCACTATTCT+CGG | 0.461302 | 4.4:+22615520 | None:intergenic |
| GTGGGAATGATGAATGTAAA+GGG | 0.463553 | 4.4:-22614839 | MS.gene32213:CDS |
| CAATTCAGGTGAACTCAATT+GGG | 0.464924 | 4.4:-22614692 | MS.gene32213:CDS |
| TGTTATCGCACCTTTGATCC+GGG | 0.465836 | 4.4:-22614988 | MS.gene32213:CDS |
| TCGCCGGAGTCGGCAAGCTC+CGG | 0.466984 | 4.4:+22615658 | None:intergenic |
| GCAGTATGTTGAATGGAATC+TGG | 0.472173 | 4.4:-22614005 | MS.gene32213:CDS |
| TTCTCTTACGCTCTCGATCA+GGG | 0.479381 | 4.4:-22615609 | MS.gene32213:CDS |
| TCCGGCCAGTTGAGATTCTC+CGG | 0.480015 | 4.4:+22615688 | None:intergenic |
| CCGGAGTCGGCAAGCTCCGG+TGG | 0.480353 | 4.4:+22615661 | None:intergenic |
| TTTGGTTGGTCCTGCTTGTG+GGG | 0.481375 | 4.4:-22614814 | MS.gene32213:CDS |
| GCGAGAATCCGTCGCTTTCG+AGG | 0.481653 | 4.4:-22615502 | MS.gene32213:CDS |
| TTGGTGTTGAGGAGGTTAAG+AGG | 0.482711 | 4.4:-22614776 | MS.gene32213:CDS |
| GTGCTTGTAAAGAGGATATG+AGG | 0.483614 | 4.4:-22615268 | MS.gene32213:CDS |
| TAAGAGGTTTATGGTTGAGG+AGG | 0.487395 | 4.4:-22614760 | MS.gene32213:CDS |
| TATTGCCTTTGGAGATGAGT+TGG | 0.493487 | 4.4:-22614658 | MS.gene32213:CDS |
| ACGGCGTTGTTGAATATTTG+TGG | 0.494941 | 4.4:-22614858 | MS.gene32213:CDS |
| ATGGCAGCCGAGGCACTCTC+TGG | 0.498131 | 4.4:-22614294 | MS.gene32213:CDS |
| TCTTCTTGAGGTTGTTGTTG+AGG | 0.499086 | 4.4:-22615174 | MS.gene32213:CDS |
| AAGCTTGAAGAGCTTCATTC+GGG | 0.499276 | 4.4:-22615554 | MS.gene32213:CDS |
| ATGGGTGATGAAGAGTTAAC+CGG | 0.499705 | 4.4:-22615707 | MS.gene32213:CDS |
| AGCCGAGGCACTCTCTGGTA+TGG | 0.501064 | 4.4:-22614289 | MS.gene32213:CDS |
| GAATCCGTCGCTTTCGAGGT+TGG | 0.503145 | 4.4:-22615498 | MS.gene32213:CDS |
| TGGATTGTGGGAGTGAGTTG+GGG | 0.503829 | 4.4:-22614962 | MS.gene32213:CDS |
| TCAAGAATTGGCTTTGAAAG+TGG | 0.504838 | 4.4:-22614427 | MS.gene32213:CDS |
| GGGGTGTTGAGAAATCTTGT+TGG | 0.506061 | 4.4:-22614795 | MS.gene32213:CDS |
| GTTGTTTCAAAACCGTGTCT+TGG | 0.507347 | 4.4:-22615290 | MS.gene32213:CDS |
| AGATGAGTTGGTTAGGCAAA+TGG | 0.509589 | 4.4:-22614646 | MS.gene32213:CDS |
| GCAAGCTCCGGTGGGAACTC+CGG | 0.510787 | 4.4:+22615670 | None:intergenic |
| CATACTGCGGAATCTGTTTG+TGG | 0.512597 | 4.4:+22614020 | None:intergenic |
| GAAGAAGCTAAGAAAGCAAT+GGG | 0.516697 | 4.4:-22614381 | MS.gene32213:CDS |
| GTATGAAGAAACAAGCTTTG+AGG | 0.522589 | 4.4:-22615199 | MS.gene32213:CDS |
| AGATTCCGCAGTATGTTGAA+TGG | 0.523644 | 4.4:-22614012 | MS.gene32213:CDS |
| GGAGAATTCGGATAATGCTT+GGG | 0.524081 | 4.4:-22614904 | MS.gene32213:CDS |
| GAGAAATCTTGTTGGTGTTG+AGG | 0.526183 | 4.4:-22614787 | MS.gene32213:CDS |
| GTGAAGGAGTGTCACGATCT+GGG | 0.535040 | 4.4:-22615455 | MS.gene32213:CDS |
| CTCTCGATCAGGGTCTTCGC+CGG | 0.535256 | 4.4:-22615599 | MS.gene32213:CDS |
| CAAATGGTGATTAGAGAAGG+TGG | 0.535384 | 4.4:-22614630 | MS.gene32213:CDS |
| CCACCGGAGCTTGCCGACTC+CGG | 0.541028 | 4.4:-22615661 | MS.gene32213:CDS |
| CAATCCAAAACCCGGATCAA+AGG | 0.542230 | 4.4:+22614978 | None:intergenic |
| AGCTTTGAGGAATCTTCTTG+AGG | 0.544272 | 4.4:-22615186 | MS.gene32213:CDS |
| AACAAAGGAAATAGCAATGA+GGG | 0.544827 | 4.4:-22614556 | MS.gene32213:CDS |
| TTCGGCTCATGGTGGTGTCA+CGG | 0.546469 | 4.4:-22614877 | MS.gene32213:CDS |
| GCGTTGATTTCTCGTATAGT+GGG | 0.552179 | 4.4:-22615424 | MS.gene32213:CDS |
| CACTCCCACAATCCAAAACC+CGG | 0.552372 | 4.4:+22614970 | None:intergenic |
| GTTAACCGGAGAATCTCAAC+TGG | 0.552559 | 4.4:-22615693 | MS.gene32213:CDS |
| GCTTTCGGAGATTTATAGAA+CGG | 0.553150 | 4.4:-22615339 | MS.gene32213:CDS |
| TGGGGAAAGTTGCGGCTGCA+AGG | 0.553228 | 4.4:-22614944 | MS.gene32213:CDS |
| GTAGCGTTTGCGAAACTCGA+TGG | 0.554998 | 4.4:-22615374 | MS.gene32213:CDS |
| CAGGCTTGTGAAATCGAAAG+AGG | 0.557597 | 4.4:-22614718 | MS.gene32213:CDS |
| AAGAAAGCAATGGGAGATGC+CGG | 0.558547 | 4.4:-22614372 | MS.gene32213:CDS |
| TGGTACCTAGAAATAGAAAG+AGG | 0.563539 | 4.4:-22614263 | MS.gene32213:CDS |
| ACCGGAGAATCTCAACTGGC+CGG | 0.566586 | 4.4:-22615689 | MS.gene32213:CDS |
| CGAAGAAGCTAAGAAAGCAA+TGG | 0.567081 | 4.4:-22614382 | MS.gene32213:CDS |
| CTAAAATACGTAACAAAGCA+CGG | 0.571449 | 4.4:+22614604 | None:intergenic |
| GCTCCAAAGCTCGCCGGAGT+CGG | 0.571896 | 4.4:+22615648 | None:intergenic |
| TGTGGGAATGATGAATGTAA+AGG | 0.577026 | 4.4:-22614840 | MS.gene32213:CDS |
| GTGTCTTGGTGCTTGTAAAG+AGG | 0.579166 | 4.4:-22615276 | MS.gene32213:CDS |
| TTTCTCAACACCCCACAAGC+AGG | 0.582608 | 4.4:+22614804 | None:intergenic |
| AGGCAAATGGTGATTAGAGA+AGG | 0.583520 | 4.4:-22614633 | MS.gene32213:CDS |
| GAGTGAGTTGGGGAAAGTTG+CGG | 0.584048 | 4.4:-22614952 | MS.gene32213:CDS |
| AAATGAGCTCCAAAGCTCGC+CGG | 0.590302 | 4.4:+22615642 | None:intergenic |
| GCAATTGCTTGATCCAGAAG+AGG | 0.594505 | 4.4:-22614205 | MS.gene32213:CDS |
| CGAAAGCGACGGATTCTCGC+CGG | 0.595097 | 4.4:+22615505 | None:intergenic |
| CAACTGGCCGGAGTTCCCAC+CGG | 0.596842 | 4.4:-22615677 | MS.gene32213:CDS |
| TGACAAGTTGCAATAGTGCA+AGG | 0.601203 | 4.4:-22614137 | MS.gene32213:CDS |
| GTCATATTCTTCGAAAACAA+AGG | 0.603999 | 4.4:-22614571 | MS.gene32213:CDS |
| CAATTGCTTGATCCAGAAGA+GGG | 0.611533 | 4.4:-22614204 | MS.gene32213:CDS |
| TTCAATAGTAGCGACGGTGA+AGG | 0.620702 | 4.4:-22615471 | MS.gene32213:CDS |
| AAATCTTGTTGGTGTTGAGG+AGG | 0.623752 | 4.4:-22614784 | MS.gene32213:CDS |
| CGGAGTCGGCAAGCTCCGGT+GGG | 0.624184 | 4.4:+22615662 | None:intergenic |
| CCTAACCAACTCATCTCCAA+AGG | 0.624383 | 4.4:+22614653 | None:intergenic |
| AATTCAAGAAGAGAGTGCTA+AGG | 0.633225 | 4.4:-22615066 | MS.gene32213:CDS |
| TCTTTACAAGCACCAAGACA+CGG | 0.634229 | 4.4:+22615278 | None:intergenic |
| AGTTCGCGAAATGGCAGCCG+AGG | 0.636169 | 4.4:-22614304 | MS.gene32213:CDS |
| TGGGAATGATGAATGTAAAG+GGG | 0.637553 | 4.4:-22614838 | MS.gene32213:CDS |
| GACCATACCAGAGAGTGCCT+CGG | 0.642714 | 4.4:+22614287 | None:intergenic |
| GAATGTAAAGGGGATTTGGT+TGG | 0.646471 | 4.4:-22614828 | MS.gene32213:CDS |
| GGTAACTTCAATAGTAGCGA+CGG | 0.649152 | 4.4:-22615477 | MS.gene32213:CDS |
| AAACAAAGGAAATAGCAATG+AGG | 0.655890 | 4.4:-22614557 | MS.gene32213:CDS |
| TTTCGGAGATTTATAGAACG+GGG | 0.658353 | 4.4:-22615337 | MS.gene32213:CDS |
| AAGGTGTTTGATGAAATTGA+CGG | 0.664534 | 4.4:-22614925 | MS.gene32213:CDS |
| GATCAAAGGTGCGATAACAC+CGG | 0.665102 | 4.4:+22614992 | None:intergenic |
| GTTACCAACCTCGAAAGCGA+CGG | 0.667911 | 4.4:+22615494 | None:intergenic |
| TGGGCTGTTTCGGCTCATGG+TGG | 0.671537 | 4.4:-22614885 | MS.gene32213:CDS |
| AGATTCCATTCAACATACTG+CGG | 0.693690 | 4.4:+22614007 | None:intergenic |
| GCCGGAATCACTATTCTCGG+CGG | 0.730159 | 4.4:+22615523 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAAGTATTTTAATGAGTTA+TGG | - | chr4.4:22615202-22615221 | MS.gene32213:CDS | 20.0% |
| ! | TTGCTATATTATGTTCGAAA+TGG | - | chr4.4:22615238-22615257 | MS.gene32213:CDS | 25.0% |
| !!! | CTGGTTTTGATTCATATAAA+GGG | - | chr4.4:22614672-22614691 | MS.gene32213:CDS | 25.0% |
| !!! | TGGTTTTGATTCATATAAAG+GGG | - | chr4.4:22614673-22614692 | MS.gene32213:CDS | 25.0% |
| !!! | TTTAATGAGTTATGGTTTTG+TGG | - | chr4.4:22615210-22615229 | MS.gene32213:CDS | 25.0% |
| AAACAAAGGAAATAGCAATG+AGG | - | chr4.4:22615143-22615162 | MS.gene32213:CDS | 30.0% | |
| AAAGTGGCATTTAGATTATC+TGG | - | chr4.4:22615289-22615308 | MS.gene32213:CDS | 30.0% | |
| AACAAAGGAAATAGCAATGA+GGG | - | chr4.4:22615144-22615163 | MS.gene32213:CDS | 30.0% | |
| AGGAAAAAGATTGTTAGTTC+TGG | - | chr4.4:22615583-22615602 | MS.gene32213:CDS | 30.0% | |
| ATGTAGTTCATGTTCTTGTT+GGG | - | chr4.4:22614588-22614607 | MS.gene32213:CDS | 30.0% | |
| CTAAAATACGTAACAAAGCA+CGG | + | chr4.4:22615099-22615118 | None:intergenic | 30.0% | |
| GATAAATTCTGCCATAAAAC+CGG | + | chr4.4:22615350-22615369 | None:intergenic | 30.0% | |
| GTCATATTCTTCGAAAACAA+AGG | - | chr4.4:22615129-22615148 | MS.gene32213:CDS | 30.0% | |
| TGAAGTTTCGATTCAAGAAT+TGG | - | chr4.4:22615261-22615280 | MS.gene32213:CDS | 30.0% | |
| TTCATTCAGAATATTGCCTT+TGG | - | chr4.4:22615031-22615050 | MS.gene32213:CDS | 30.0% | |
| TTCGAAGAATATGACCATTT+CGG | + | chr4.4:22615124-22615143 | None:intergenic | 30.0% | |
| ! | AAGGTGTTTGATGAAATTGA+CGG | - | chr4.4:22614775-22614794 | MS.gene32213:CDS | 30.0% |
| ! | ACAAACCTCTTTCTATTTCT+AGG | + | chr4.4:22615445-22615464 | None:intergenic | 30.0% |
| !! | TACGTATTTTAGATCCGAAA+TGG | - | chr4.4:22615107-22615126 | MS.gene32213:CDS | 30.0% |
| !! | TGCTAGTTTGTCTATGTTTT+TGG | + | chr4.4:22615614-22615633 | None:intergenic | 30.0% |
| !!! | GCTGGTTTTGATTCATATAA+AGG | - | chr4.4:22614671-22614690 | MS.gene32213:CDS | 30.0% |
| AGATTCCATTCAACATACTG+CGG | + | chr4.4:22615696-22615715 | None:intergenic | 35.0% | |
| CAATTCAGGTGAACTCAATT+GGG | - | chr4.4:22615008-22615027 | MS.gene32213:CDS | 35.0% | |
| CATTGCTTTCTTAGCTTCTT+CGG | + | chr4.4:22615320-22615339 | None:intergenic | 35.0% | |
| CTTTCGGAGATTTATAGAAC+GGG | - | chr4.4:22614362-22614381 | MS.gene32213:CDS | 35.0% | |
| GAAGAAGCTAAGAAAGCAAT+GGG | - | chr4.4:22615319-22615338 | MS.gene32213:CDS | 35.0% | |
| GATGAAATTGACGGAGAATT+CGG | - | chr4.4:22614784-22614803 | MS.gene32213:CDS | 35.0% | |
| GATGTAGTTCATGTTCTTGT+TGG | - | chr4.4:22614587-22614606 | MS.gene32213:CDS | 35.0% | |
| GCTTTCGGAGATTTATAGAA+CGG | - | chr4.4:22614361-22614380 | MS.gene32213:CDS | 35.0% | |
| GTATGAAGAAACAAGCTTTG+AGG | - | chr4.4:22614501-22614520 | MS.gene32213:CDS | 35.0% | |
| GTGGGAATGATGAATGTAAA+GGG | - | chr4.4:22614861-22614880 | MS.gene32213:CDS | 35.0% | |
| TGATGAATGTAAAGGGGATT+TGG | - | chr4.4:22614868-22614887 | MS.gene32213:CDS | 35.0% | |
| TGGGAATGATGAATGTAAAG+GGG | - | chr4.4:22614862-22614881 | MS.gene32213:CDS | 35.0% | |
| TGGTACCTAGAAATAGAAAG+AGG | - | chr4.4:22615437-22615456 | MS.gene32213:CDS | 35.0% | |
| TGTGGGAATGATGAATGTAA+AGG | - | chr4.4:22614860-22614879 | MS.gene32213:CDS | 35.0% | |
| TTTCGGAGATTTATAGAACG+GGG | - | chr4.4:22614363-22614382 | MS.gene32213:CDS | 35.0% | |
| ! | AGGATGAAGATTGGTGATTT+GGG | - | chr4.4:22614479-22614498 | MS.gene32213:CDS | 35.0% |
| ! | ATCATTTGAAGTTCGCGAAA+TGG | - | chr4.4:22615387-22615406 | MS.gene32213:CDS | 35.0% |
| ! | CATGTTCTTGTTGGGTTTTT+GGG | - | chr4.4:22614596-22614615 | MS.gene32213:CDS | 35.0% |
| ! | TCATGTTCTTGTTGGGTTTT+TGG | - | chr4.4:22614595-22614614 | MS.gene32213:CDS | 35.0% |
| ! | TGAGGATGAGAAGTATGTTA+AGG | - | chr4.4:22614544-22614563 | MS.gene32213:CDS | 35.0% |
| !! | AATTCAAGAAGAGAGTGCTA+AGG | - | chr4.4:22614634-22614653 | MS.gene32213:CDS | 35.0% |
| !! | ATTTTGACGAGGATGAAGAT+TGG | - | chr4.4:22614470-22614489 | MS.gene32213:CDS | 35.0% |
| !! | TCAAGAATTGGCTTTGAAAG+TGG | - | chr4.4:22615273-22615292 | MS.gene32213:CDS | 35.0% |
| !!! | ACGAATAAGTTGCCATTTTC+CGG | + | chr4.4:22614123-22614142 | None:intergenic | 35.0% |
| !!! | ATGTGAGAGATATTTTGACG+AGG | - | chr4.4:22614459-22614478 | MS.gene32213:CDS | 35.0% |
| AAGCTTGAAGAGCTTCATTC+GGG | - | chr4.4:22614146-22614165 | MS.gene32213:CDS | 40.0% | |
| ACGGCGTTGTTGAATATTTG+TGG | - | chr4.4:22614842-22614861 | MS.gene32213:CDS | 40.0% | |
| AGATTCCGCAGTATGTTGAA+TGG | - | chr4.4:22615688-22615707 | MS.gene32213:CDS | 40.0% | |
| AGGCAAATGGTGATTAGAGA+AGG | - | chr4.4:22615067-22615086 | MS.gene32213:CDS | 40.0% | |
| ATCGAAAGAGGAAGCAATTC+AGG | - | chr4.4:22614994-22615013 | MS.gene32213:CDS | 40.0% | |
| ATGGGTGATGAAGAGTTAAC+CGG | - | chr4.4:22613993-22614012 | MS.gene32213:CDS | 40.0% | |
| CAAATGGTGATTAGAGAAGG+TGG | - | chr4.4:22615070-22615089 | MS.gene32213:CDS | 40.0% | |
| CAAGCTTGAAGAGCTTCATT+CGG | - | chr4.4:22614145-22614164 | MS.gene32213:CDS | 40.0% | |
| CAATTGCTTGATCCAGAAGA+GGG | - | chr4.4:22615496-22615515 | MS.gene32213:CDS | 40.0% | |
| CGAAGAAGCTAAGAAAGCAA+TGG | - | chr4.4:22615318-22615337 | MS.gene32213:CDS | 40.0% | |
| CGGCGTTGTTGAATATTTGT+GGG | - | chr4.4:22614843-22614862 | MS.gene32213:CDS | 40.0% | |
| GCAATTCAGGTGAACTCAAT+TGG | - | chr4.4:22615007-22615026 | MS.gene32213:CDS | 40.0% | |
| GCAGTATGTTGAATGGAATC+TGG | - | chr4.4:22615695-22615714 | MS.gene32213:CDS | 40.0% | |
| GGAGAATTCGGATAATGCTT+GGG | - | chr4.4:22614796-22614815 | MS.gene32213:CDS | 40.0% | |
| GGTAACTTCAATAGTAGCGA+CGG | - | chr4.4:22614223-22614242 | MS.gene32213:CDS | 40.0% | |
| GGTTAAGAGGTTTATGGTTG+AGG | - | chr4.4:22614937-22614956 | MS.gene32213:CDS | 40.0% | |
| GTGCTTGTAAAGAGGATATG+AGG | - | chr4.4:22614432-22614451 | MS.gene32213:CDS | 40.0% | |
| TAAGAGGTTTATGGTTGAGG+AGG | - | chr4.4:22614940-22614959 | MS.gene32213:CDS | 40.0% | |
| TCTTTACAAGCACCAAGACA+CGG | + | chr4.4:22614425-22614444 | None:intergenic | 40.0% | |
| TGACAAGTTGCAATAGTGCA+AGG | - | chr4.4:22615563-22615582 | MS.gene32213:CDS | 40.0% | |
| TGAGGAGGTTAAGAGGTTTA+TGG | - | chr4.4:22614931-22614950 | MS.gene32213:CDS | 40.0% | |
| TGGTTTAGCGAAGAAGCTTT+CGG | - | chr4.4:22614346-22614365 | MS.gene32213:CDS | 40.0% | |
| TTACCTGAATTTCCCTCTTC+TGG | + | chr4.4:22615511-22615530 | None:intergenic | 40.0% | |
| ! | AAGGTTGTTTGTGTTGTTGC+TGG | - | chr4.4:22614653-22614672 | MS.gene32213:CDS | 40.0% |
| ! | GAATGTAAAGGGGATTTGGT+TGG | - | chr4.4:22614872-22614891 | MS.gene32213:CDS | 40.0% |
| ! | GAGGATGAAGATTGGTGATT+TGG | - | chr4.4:22614478-22614497 | MS.gene32213:CDS | 40.0% |
| ! | GCTTTTGATGCAGAGTGATT+TGG | - | chr4.4:22614301-22614320 | MS.gene32213:CDS | 40.0% |
| ! | GTTGTTTCAAAACCGTGTCT+TGG | - | chr4.4:22614410-22614429 | MS.gene32213:CDS | 40.0% |
| ! | TATTGCCTTTGGAGATGAGT+TGG | - | chr4.4:22615042-22615061 | MS.gene32213:CDS | 40.0% |
| ! | TCTTCTTGAGGTTGTTGTTG+AGG | - | chr4.4:22614526-22614545 | MS.gene32213:CDS | 40.0% |
| !! | AAATCTTGTTGGTGTTGAGG+AGG | - | chr4.4:22614916-22614935 | MS.gene32213:CDS | 40.0% |
| !! | AGAACGGGGATTTTGACAAA+TGG | - | chr4.4:22614377-22614396 | MS.gene32213:CDS | 40.0% |
| !! | AGATGAGTTGGTTAGGCAAA+TGG | - | chr4.4:22615054-22615073 | MS.gene32213:CDS | 40.0% |
| !! | AGCTTTGAGGAATCTTCTTG+AGG | - | chr4.4:22614514-22614533 | MS.gene32213:CDS | 40.0% |
| !! | GAACGGGGATTTTGACAAAT+GGG | - | chr4.4:22614378-22614397 | MS.gene32213:CDS | 40.0% |
| !! | GAGAAATCTTGTTGGTGTTG+AGG | - | chr4.4:22614913-22614932 | MS.gene32213:CDS | 40.0% |
| !! | GCGTTGATTTCTCGTATAGT+GGG | - | chr4.4:22614276-22614295 | MS.gene32213:CDS | 40.0% |
| !! | TGCGTTGATTTCTCGTATAG+TGG | - | chr4.4:22614275-22614294 | MS.gene32213:CDS | 40.0% |
| !!! | AAAGGGGTTTTGATTAGTGC+CGG | - | chr4.4:22614689-22614708 | MS.gene32213:CDS | 40.0% |
| !!! | GTTTTTGGGTTCTAATGAGG+TGG | - | chr4.4:22614610-22614629 | MS.gene32213:CDS | 40.0% |
| !!! | TGGGTTTTTGGGTTCTAATG+AGG | - | chr4.4:22614607-22614626 | MS.gene32213:CDS | 40.0% |
| AAGAAAGCAATGGGAGATGC+CGG | - | chr4.4:22615328-22615347 | MS.gene32213:CDS | 45.0% | |
| CAATCCAAAACCCGGATCAA+AGG | + | chr4.4:22614725-22614744 | None:intergenic | 45.0% | |
| CAGGCTTGTGAAATCGAAAG+AGG | - | chr4.4:22614982-22615001 | MS.gene32213:CDS | 45.0% | |
| CATACTGCGGAATCTGTTTG+TGG | + | chr4.4:22615683-22615702 | None:intergenic | 45.0% | |
| CCTAACCAACTCATCTCCAA+AGG | + | chr4.4:22615050-22615069 | None:intergenic | 45.0% | |
| CGGAGAATTCGGATAATGCT+TGG | - | chr4.4:22614795-22614814 | MS.gene32213:CDS | 45.0% | |
| GATCCAGAAGAGGGAAATTC+AGG | - | chr4.4:22615505-22615524 | MS.gene32213:CDS | 45.0% | |
| GCAATTGCTTGATCCAGAAG+AGG | - | chr4.4:22615495-22615514 | MS.gene32213:CDS | 45.0% | |
| GGATAATGCTTGGGCTGTTT+CGG | - | chr4.4:22614805-22614824 | MS.gene32213:CDS | 45.0% | |
| GTGTTATCGCACCTTTGATC+CGG | - | chr4.4:22614711-22614730 | MS.gene32213:CDS | 45.0% | |
| GTTAACCGGAGAATCTCAAC+TGG | - | chr4.4:22614007-22614026 | MS.gene32213:CDS | 45.0% | |
| TGTTATCGCACCTTTGATCC+GGG | - | chr4.4:22614712-22614731 | MS.gene32213:CDS | 45.0% | |
| TTCAATAGTAGCGACGGTGA+AGG | - | chr4.4:22614229-22614248 | MS.gene32213:CDS | 45.0% | |
| TTCTCTTACGCTCTCGATCA+GGG | - | chr4.4:22614091-22614110 | MS.gene32213:CDS | 45.0% | |
| TTGGATTGTGGGAGTGAGTT+GGG | - | chr4.4:22614737-22614756 | MS.gene32213:CDS | 45.0% | |
| TTTCTCTTACGCTCTCGATC+AGG | - | chr4.4:22614090-22614109 | MS.gene32213:CDS | 45.0% | |
| TTTGGATTGTGGGAGTGAGT+TGG | - | chr4.4:22614736-22614755 | MS.gene32213:CDS | 45.0% | |
| ! | ATGCTGTGTCGACGTTTATC+AGG | - | chr4.4:22614963-22614982 | MS.gene32213:CDS | 45.0% |
| ! | ATTTGGTTGGTCCTGCTTGT+GGG | - | chr4.4:22614885-22614904 | MS.gene32213:CDS | 45.0% |
| ! | GATCAAAGGTGCGATAACAC+CGG | + | chr4.4:22614711-22614730 | None:intergenic | 45.0% |
| !! | CCTTTGGAGATGAGTTGGTT+AGG | - | chr4.4:22615047-22615066 | MS.gene32213:CDS | 45.0% |
| !! | GGGGTGTTGAGAAATCTTGT+TGG | - | chr4.4:22614905-22614924 | MS.gene32213:CDS | 45.0% |
| !! | GTGTCTTGGTGCTTGTAAAG+AGG | - | chr4.4:22614424-22614443 | MS.gene32213:CDS | 45.0% |
| !! | TTGGTGTTGAGGAGGTTAAG+AGG | - | chr4.4:22614924-22614943 | MS.gene32213:CDS | 45.0% |
| !!! | AATGGGAGATGCCGGTTTTA+TGG | - | chr4.4:22615336-22615355 | MS.gene32213:CDS | 45.0% |
| !!! | TGATCCGGGTTTTGGATTGT+GGG | - | chr4.4:22614726-22614745 | MS.gene32213:CDS | 45.0% |
| !!! | TTGATCCGGGTTTTGGATTG+TGG | - | chr4.4:22614725-22614744 | MS.gene32213:CDS | 45.0% |
| AAATGAGCTCCAAAGCTCGC+CGG | + | chr4.4:22614061-22614080 | None:intergenic | 50.0% | |
| CACTCCCACAATCCAAAACC+CGG | + | chr4.4:22614733-22614752 | None:intergenic | 50.0% | |
| CTCGCCGGAATCACTATTCT+CGG | + | chr4.4:22614183-22614202 | None:intergenic | 50.0% | |
| GTAGCGTTTGCGAAACTCGA+TGG | - | chr4.4:22614326-22614345 | MS.gene32213:CDS | 50.0% | |
| GTTACCAACCTCGAAAGCGA+CGG | + | chr4.4:22614209-22614228 | None:intergenic | 50.0% | |
| TGGATTGTGGGAGTGAGTTG+GGG | - | chr4.4:22614738-22614757 | MS.gene32213:CDS | 50.0% | |
| TTTCTCAACACCCCACAAGC+AGG | + | chr4.4:22614899-22614918 | None:intergenic | 50.0% | |
| ! | GAGTGAGTTGGGGAAAGTTG+CGG | - | chr4.4:22614748-22614767 | MS.gene32213:CDS | 50.0% |
| ! | GATTTGGTTGGTCCTGCTTG+TGG | - | chr4.4:22614884-22614903 | MS.gene32213:CDS | 50.0% |
| ! | TTTGGTTGGTCCTGCTTGTG+GGG | - | chr4.4:22614886-22614905 | MS.gene32213:CDS | 50.0% |
| !! | GTGAAGGAGTGTCACGATCT+GGG | - | chr4.4:22614245-22614264 | MS.gene32213:CDS | 50.0% |
| ACCGGAGAATCTCAACTGGC+CGG | - | chr4.4:22614011-22614030 | MS.gene32213:CDS | 55.0% | |
| GCCGCCGAGAATAGTGATTC+CGG | - | chr4.4:22614176-22614195 | MS.gene32213:CDS | 55.0% | |
| GCCGGAATCACTATTCTCGG+CGG | + | chr4.4:22614180-22614199 | None:intergenic | 55.0% | |
| GGCACTCTCTGGTATGGTCT+TGG | - | chr4.4:22615417-22615436 | MS.gene32213:CDS | 55.0% | |
| TCAGGGTCTTCGCCGGAAAA+TGG | - | chr4.4:22614108-22614127 | MS.gene32213:CDS | 55.0% | |
| TCCGGCCAGTTGAGATTCTC+CGG | + | chr4.4:22614015-22614034 | None:intergenic | 55.0% | |
| ! | CGCACCTTTGATCCGGGTTT+TGG | - | chr4.4:22614718-22614737 | MS.gene32213:CDS | 55.0% |
| ! | GAATCCGTCGCTTTCGAGGT+TGG | - | chr4.4:22614202-22614221 | MS.gene32213:CDS | 55.0% |
| ! | TTCGGCTCATGGTGGTGTCA+CGG | - | chr4.4:22614823-22614842 | MS.gene32213:CDS | 55.0% |
| !! | GACCATACCAGAGAGTGCCT+CGG | + | chr4.4:22615416-22615435 | None:intergenic | 55.0% |
| !! | GGTGAAGGAGTGTCACGATC+TGG | - | chr4.4:22614244-22614263 | MS.gene32213:CDS | 55.0% |
| AGTTCGCGAAATGGCAGCCG+AGG | - | chr4.4:22615396-22615415 | MS.gene32213:CDS | 60.0% | |
| CTCTCGATCAGGGTCTTCGC+CGG | - | chr4.4:22614101-22614120 | MS.gene32213:CDS | 60.0% | |
| TGGGGAAAGTTGCGGCTGCA+AGG | - | chr4.4:22614756-22614775 | MS.gene32213:CDS | 60.0% | |
| ! | AGCCGAGGCACTCTCTGGTA+TGG | - | chr4.4:22615411-22615430 | MS.gene32213:CDS | 60.0% |
| ! | CGAAAGCGACGGATTCTCGC+CGG | + | chr4.4:22614198-22614217 | None:intergenic | 60.0% |
| ! | GCGAGAATCCGTCGCTTTCG+AGG | - | chr4.4:22614198-22614217 | MS.gene32213:CDS | 60.0% |
| ! | GCTTGGGCTGTTTCGGCTCA+TGG | - | chr4.4:22614812-22614831 | MS.gene32213:CDS | 60.0% |
| ! | TGGGCTGTTTCGGCTCATGG+TGG | - | chr4.4:22614815-22614834 | MS.gene32213:CDS | 60.0% |
| CAACTGGCCGGAGTTCCCAC+CGG | - | chr4.4:22614023-22614042 | MS.gene32213:CDS | 65.0% | |
| GCAAGCTCCGGTGGGAACTC+CGG | + | chr4.4:22614033-22614052 | None:intergenic | 65.0% | |
| GCTCCAAAGCTCGCCGGAGT+CGG | + | chr4.4:22614055-22614074 | None:intergenic | 65.0% | |
| ! | ATGGCAGCCGAGGCACTCTC+TGG | - | chr4.4:22615406-22615425 | MS.gene32213:CDS | 65.0% |
| !! | TTGCCGACTCCGGCGAGCTT+TGG | - | chr4.4:22614049-22614068 | MS.gene32213:CDS | 65.0% |
| CGGAGTCGGCAAGCTCCGGT+GGG | + | chr4.4:22614041-22614060 | None:intergenic | 70.0% | |
| TCGCCGGAGTCGGCAAGCTC+CGG | + | chr4.4:22614045-22614064 | None:intergenic | 70.0% | |
| !! | CCACCGGAGCTTGCCGACTC+CGG | - | chr4.4:22614039-22614058 | MS.gene32213:CDS | 70.0% |
| CCGGAGTCGGCAAGCTCCGG+TGG | + | chr4.4:22614042-22614061 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 22613993 | 22615729 | 22613993 | ID=MS.gene32213 |
| chr4.4 | mRNA | 22613993 | 22615729 | 22613993 | ID=MS.gene32213.t1;Parent=MS.gene32213 |
| chr4.4 | exon | 22613993 | 22615729 | 22613993 | ID=MS.gene32213.t1.exon1;Parent=MS.gene32213.t1 |
| chr4.4 | CDS | 22613993 | 22615729 | 22613993 | ID=cds.MS.gene32213.t1;Parent=MS.gene32213.t1 |
| Gene Sequence |
| Protein sequence |
