Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28664.t1 | XP_003608254.1 | 98.6 | 577 | 8 | 0 | 1 | 577 | 1 | 577 | 0.00E+00 | 1096.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28664.t1 | G7JRW0 | 98.6 | 577 | 8 | 0 | 1 | 577 | 1 | 577 | 0.0e+00 | 1096.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42235 | MS.gene28664 | PPI |
| MS.gene013180 | MS.gene28664 | PPI |
| MS.gene055531 | MS.gene28664 | PPI |
| MS.gene36899 | MS.gene28664 | PPI |
| MS.gene06253 | MS.gene28664 | PPI |
| MS.gene023795 | MS.gene28664 | PPI |
| MS.gene52172 | MS.gene28664 | PPI |
| MS.gene27647 | MS.gene28664 | PPI |
| MS.gene57486 | MS.gene28664 | PPI |
| MS.gene41659 | MS.gene28664 | PPI |
| MS.gene019466 | MS.gene28664 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28664.t1 | MTR_4g091320 | 98.614 | 577 | 8 | 0 | 1 | 577 | 1 | 577 | 0.0 | 1155 |
| MS.gene28664.t1 | MTR_4g007850 | 92.949 | 156 | 11 | 0 | 422 | 577 | 367 | 522 | 6.10e-93 | 295 |
| MS.gene28664.t1 | MTR_8g032570 | 31.449 | 566 | 337 | 18 | 27 | 572 | 25 | 559 | 3.28e-67 | 228 |
| MS.gene28664.t1 | MTR_8g032570 | 31.449 | 566 | 337 | 18 | 27 | 572 | 48 | 582 | 4.98e-67 | 228 |
| MS.gene28664.t1 | MTR_7g076220 | 30.702 | 570 | 344 | 15 | 22 | 570 | 17 | 556 | 2.09e-65 | 223 |
| MS.gene28664.t1 | MTR_3g098730 | 29.245 | 530 | 350 | 14 | 45 | 567 | 36 | 547 | 1.66e-45 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28664.t1 | AT1G61350 | 60.917 | 545 | 203 | 6 | 40 | 577 | 32 | 573 | 0.0 | 644 |
| MS.gene28664.t1 | AT2G45720 | 31.272 | 566 | 340 | 15 | 22 | 572 | 20 | 551 | 2.57e-69 | 234 |
| MS.gene28664.t1 | AT2G45720 | 31.272 | 566 | 340 | 15 | 22 | 572 | 20 | 551 | 2.57e-69 | 234 |
| MS.gene28664.t1 | AT2G45720 | 31.272 | 566 | 340 | 15 | 22 | 572 | 20 | 551 | 2.57e-69 | 234 |
| MS.gene28664.t1 | AT2G45720 | 31.272 | 566 | 340 | 15 | 22 | 572 | 20 | 551 | 2.57e-69 | 234 |
| MS.gene28664.t1 | AT2G45720 | 31.272 | 566 | 340 | 15 | 22 | 572 | 20 | 551 | 2.57e-69 | 234 |
| MS.gene28664.t1 | AT5G50900 | 31.532 | 555 | 353 | 13 | 23 | 567 | 11 | 548 | 2.54e-62 | 215 |
| MS.gene28664.t1 | AT1G01830 | 28.622 | 566 | 361 | 15 | 22 | 572 | 36 | 573 | 5.44e-59 | 206 |
| MS.gene28664.t1 | AT1G01830 | 28.622 | 566 | 361 | 15 | 22 | 572 | 36 | 573 | 5.44e-59 | 206 |
| MS.gene28664.t1 | AT1G01830 | 28.622 | 566 | 361 | 15 | 22 | 572 | 36 | 573 | 5.44e-59 | 206 |
| MS.gene28664.t1 | AT2G05810 | 29.670 | 546 | 359 | 16 | 38 | 571 | 40 | 572 | 4.82e-53 | 190 |
| MS.gene28664.t1 | AT2G05810 | 29.670 | 546 | 359 | 16 | 38 | 571 | 40 | 572 | 4.82e-53 | 190 |
| MS.gene28664.t1 | AT4G16490 | 24.138 | 319 | 218 | 7 | 143 | 447 | 157 | 465 | 7.45e-12 | 68.2 |
Find 131 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCTGAATTTCCCTCTTC+TGG | 0.157688 | 4.2:+20936479 | None:intergenic |
| CGCACCTTTGATCCGGGTTT+TGG | 0.178046 | 4.2:-20937269 | MS.gene28664:CDS |
| ACAAACCTCTTTCTATTTCT+AGG | 0.200258 | 4.2:+20936545 | None:intergenic |
| TGAGGAGGTTAAGAGGTTTA+TGG | 0.200986 | 4.2:-20937056 | MS.gene28664:CDS |
| CATTGCTATTTCCTTTGTTT+TGG | 0.211181 | 4.2:+20936847 | None:intergenic |
| TTGGATTGTGGGAGTGAATT+GGG | 0.241336 | 4.2:-20937250 | MS.gene28664:CDS |
| AAAGTGGCATTTAGATTATC+TGG | 0.248155 | 4.2:-20936698 | MS.gene28664:CDS |
| TGCAAAATCATTTGAAGTTC+GGG | 0.266275 | 4.2:-20936606 | MS.gene28664:CDS |
| TCAGGGTCTTTGCCGGAAAA+TGG | 0.289295 | 4.2:-20937879 | MS.gene28664:CDS |
| TTTGGATTGTGGGAGTGAAT+TGG | 0.298686 | 4.2:-20937251 | MS.gene28664:CDS |
| ATTTGGTTGGTCCTGCTTGT+GGG | 0.301326 | 4.2:-20937102 | MS.gene28664:CDS |
| CTTTCGATCAGGGTCTTTGC+CGG | 0.318635 | 4.2:-20937886 | MS.gene28664:CDS |
| TTGCCGACTCCGGCGAGCTT+TGG | 0.323964 | 4.2:-20937938 | MS.gene28664:CDS |
| ATCGAAAGAGGAAGCAATTC+AGG | 0.325278 | 4.2:-20936993 | MS.gene28664:CDS |
| GGATAATGCTTGGGCTGTTT+CGG | 0.325581 | 4.2:-20937182 | MS.gene28664:CDS |
| GCAATTCAGGTGAACTCAAT+TGG | 0.339387 | 4.2:-20936980 | MS.gene28664:CDS |
| GAGGATGAAGATTGGTGATT+TGG | 0.340567 | 4.2:-20937509 | MS.gene28664:CDS |
| TTTCTCTTACGCTTTCGATC+AGG | 0.344713 | 4.2:-20937897 | MS.gene28664:CDS |
| TTGGAAGAATATGACCATTT+CGG | 0.345598 | 4.2:+20936866 | None:intergenic |
| ATGCAAAATCATTTGAAGTT+CGG | 0.348011 | 4.2:-20936607 | MS.gene28664:CDS |
| AAGGTTGTTTGTGTTGTTGC+TGG | 0.349484 | 4.2:-20937334 | MS.gene28664:CDS |
| GATGTAGTTCATGTTCTTGT+TGG | 0.350353 | 4.2:-20937400 | MS.gene28664:CDS |
| ATGCTGTGTCGACGTTTATC+AGG | 0.351926 | 4.2:-20937024 | MS.gene28664:CDS |
| GATCCAGAAGAGGGAAATTC+AGG | 0.354609 | 4.2:-20936482 | MS.gene28664:CDS |
| GCCGCTGAAAACAGCGATTC+CGG | 0.355429 | 4.2:-20937811 | MS.gene28664:CDS |
| TTCATTCAGAATATTGCCTT+TGG | 0.362418 | 4.2:-20936956 | MS.gene28664:CDS |
| TGCGTTGATTTCTCGTACAA+TGG | 0.364476 | 4.2:-20937712 | MS.gene28664:CDS |
| ATCATTTGAAGTTCGGGAAA+TGG | 0.365241 | 4.2:-20936600 | MS.gene28664:CDS |
| TGATGAATGTAAAGGGGATT+TGG | 0.369016 | 4.2:-20937119 | MS.gene28664:CDS |
| GATGAAATTGACGGAGAATT+CGG | 0.371164 | 4.2:-20937203 | MS.gene28664:CDS |
| CATTGCTTTCTTAGCTTCTT+CGG | 0.371612 | 4.2:+20936670 | None:intergenic |
| GGTTAAGAGGTTTATGGTTG+AGG | 0.384772 | 4.2:-20937050 | MS.gene28664:CDS |
| GTGTTATCGCACCTTTGATC+CGG | 0.390866 | 4.2:-20937276 | MS.gene28664:CDS |
| AAGCTTGAAGAGCTTCATTC+AGG | 0.392670 | 4.2:-20937841 | MS.gene28664:CDS |
| AGGATGAAGATTGGTGATTT+GGG | 0.392679 | 4.2:-20937508 | MS.gene28664:CDS |
| GACAAATTCTGCCATAAAAC+CGG | 0.407261 | 4.2:+20936640 | None:intergenic |
| GCTTGGGCTGTTTCGGCTCA+TGG | 0.409210 | 4.2:-20937175 | MS.gene28664:CDS |
| GGTGAAGGAGTGTCACGATC+TGG | 0.410395 | 4.2:-20937743 | MS.gene28664:CDS |
| GATTTGGTTGGTCCTGCTTG+TGG | 0.412391 | 4.2:-20937103 | MS.gene28664:CDS |
| TTTAATGAGTTATGGCTTTG+TGG | 0.420680 | 4.2:-20936777 | MS.gene28664:CDS |
| CTTTCGGAGATTTATAGAAC+AGG | 0.425787 | 4.2:-20937625 | MS.gene28664:CDS |
| CGGAGAATTCGGATAATGCT+TGG | 0.427171 | 4.2:-20937192 | MS.gene28664:CDS |
| TGGTTTAGCGAAGAAGCTTT+CGG | 0.433272 | 4.2:-20937641 | MS.gene28664:CDS |
| TTCTCTTACGCTTTCGATCA+GGG | 0.434304 | 4.2:-20937896 | MS.gene28664:CDS |
| CGGCGTTGTTGAATATTTGT+GGG | 0.439542 | 4.2:-20937144 | MS.gene28664:CDS |
| ATGTAGTTCATGTTCTTGTT+GGG | 0.447382 | 4.2:-20937399 | MS.gene28664:CDS |
| TGAGGATGAGAAGTATGTTA+AGG | 0.450602 | 4.2:-20937443 | MS.gene28664:CDS |
| CCTTTGGAGATGAGTTGGTT+AGG | 0.452790 | 4.2:-20936940 | MS.gene28664:CDS |
| GTGGGAATGATGAATGTAAA+GGG | 0.463553 | 4.2:-20937126 | MS.gene28664:CDS |
| CAATTCAGGTGAACTCAATT+GGG | 0.464924 | 4.2:-20936979 | MS.gene28664:CDS |
| TGTTATCGCACCTTTGATCC+GGG | 0.465836 | 4.2:-20937275 | MS.gene28664:CDS |
| TGAAGTTTCGATTCAAGAGT+TGG | 0.466692 | 4.2:-20936726 | MS.gene28664:CDS |
| TCGCCGGAGTCGGCAAGCTC+CGG | 0.466984 | 4.2:+20937945 | None:intergenic |
| GCAGTATGTTGAATGGAATC+TGG | 0.472173 | 4.2:-20936292 | MS.gene28664:CDS |
| CCGGAGTCGGCAAGCTCCGG+TGG | 0.480353 | 4.2:+20937948 | None:intergenic |
| TTTGGTTGGTCCTGCTTGTG+GGG | 0.481375 | 4.2:-20937101 | MS.gene28664:CDS |
| TTGGTGTTGAGGAGGTTAAG+AGG | 0.482711 | 4.2:-20937063 | MS.gene28664:CDS |
| GTGCTTGTAAAGAGGATATG+AGG | 0.483614 | 4.2:-20937555 | MS.gene28664:CDS |
| TAAGAGGTTTATGGTTGAGG+AGG | 0.487395 | 4.2:-20937047 | MS.gene28664:CDS |
| TATTGCCTTTGGAGATGAGT+TGG | 0.493487 | 4.2:-20936945 | MS.gene28664:CDS |
| ACGGCGTTGTTGAATATTTG+TGG | 0.494941 | 4.2:-20937145 | MS.gene28664:CDS |
| TGGATTGTGGGAGTGAATTG+GGG | 0.496256 | 4.2:-20937249 | MS.gene28664:CDS |
| ATGGCAGCCGAGGCACTCTC+TGG | 0.498131 | 4.2:-20936581 | MS.gene28664:CDS |
| TCTTCTTGAGGTTGTTGTTG+AGG | 0.499086 | 4.2:-20937461 | MS.gene28664:CDS |
| ATGGGTGATGAAGAGTTAAC+CGG | 0.499705 | 4.2:-20937994 | MS.gene28664:CDS |
| GCGAGAATCCGTCGCTTTCG+AGG | 0.499960 | 4.2:-20937789 | MS.gene28664:CDS |
| AGCCGAGGCACTCTCTGGTA+TGG | 0.501064 | 4.2:-20936576 | MS.gene28664:CDS |
| GCGTTGATTTCTCGTACAAT+GGG | 0.502189 | 4.2:-20937711 | MS.gene28664:CDS |
| TCAAGAGTTGGCTTTGAAAG+TGG | 0.504838 | 4.2:-20936714 | MS.gene28664:CDS |
| GGGGTGTTGAGAAATCTTGT+TGG | 0.506061 | 4.2:-20937082 | MS.gene28664:CDS |
| GTTGTTTCAAAACCGTGTCT+TGG | 0.507347 | 4.2:-20937577 | MS.gene28664:CDS |
| AGATGAGTTGGTTAGGCAAA+TGG | 0.509589 | 4.2:-20936933 | MS.gene28664:CDS |
| GCAAGCTCCGGTGGGAACTC+CGG | 0.510787 | 4.2:+20937957 | None:intergenic |
| TCCGGCCAGTTGAGACTCTC+CGG | 0.514643 | 4.2:+20937975 | None:intergenic |
| GAAGAAGCTAAGAAAGCAAT+GGG | 0.516697 | 4.2:-20936668 | MS.gene28664:CDS |
| GATCAAGTAATTGCAGAAGC+AGG | 0.518425 | 4.2:+20936501 | None:intergenic |
| GTATGAAGAAACAAGCTTTG+AGG | 0.522589 | 4.2:-20937486 | MS.gene28664:CDS |
| AGATTCCGCAGTATGTTGAA+TGG | 0.523644 | 4.2:-20936299 | MS.gene28664:CDS |
| GGAGAATTCGGATAATGCTT+GGG | 0.524081 | 4.2:-20937191 | MS.gene28664:CDS |
| GAGAAATCTTGTTGGTGTTG+AGG | 0.526183 | 4.2:-20937074 | MS.gene28664:CDS |
| AACAAAGGAAATAGCAATGA+GGG | 0.528251 | 4.2:-20936843 | MS.gene28664:CDS |
| GTGAAGGAGTGTCACGATCT+GGG | 0.535040 | 4.2:-20937742 | MS.gene28664:CDS |
| CAAATGGTGATTAGAGAAGG+TGG | 0.535384 | 4.2:-20936917 | MS.gene28664:CDS |
| CCACCGGAGCTTGCCGACTC+CGG | 0.541028 | 4.2:-20937948 | MS.gene28664:CDS |
| CAATCCAAAACCCGGATCAA+AGG | 0.542230 | 4.2:+20937265 | None:intergenic |
| AGCTTTGAGGAATCTTCTTG+AGG | 0.544272 | 4.2:-20937473 | MS.gene28664:CDS |
| TTCGGCTCATGGTGGTGTCA+CGG | 0.546469 | 4.2:-20937164 | MS.gene28664:CDS |
| TGGGGAAAGTTGCGGCTGCA+AGG | 0.548523 | 4.2:-20937231 | MS.gene28664:CDS |
| CACTCCCACAATCCAAAACC+CGG | 0.554855 | 4.2:+20937257 | None:intergenic |
| GTTAACCGGAGAGTCTCAAC+TGG | 0.554855 | 4.2:-20937980 | MS.gene28664:CDS |
| GTAGCGTTTGCGAAACTCGA+TGG | 0.554998 | 4.2:-20937661 | MS.gene28664:CDS |
| CAGGCTTGTGAAATCGAAAG+AGG | 0.557597 | 4.2:-20937005 | MS.gene28664:CDS |
| AAGAAAGCAATGGGAGATGC+CGG | 0.558547 | 4.2:-20936659 | MS.gene28664:CDS |
| GGCACTCTCTGGTATGGTCA+TGG | 0.564855 | 4.2:-20936570 | MS.gene28664:CDS |
| CGAAGAAGCTAAGAAAGCAA+TGG | 0.567081 | 4.2:-20936669 | MS.gene28664:CDS |
| GCTCCAAAGCTCGCCGGAGT+CGG | 0.571896 | 4.2:+20937935 | None:intergenic |
| ACCGGAGAGTCTCAACTGGC+CGG | 0.573728 | 4.2:-20937976 | MS.gene28664:CDS |
| GTCATATTCTTCCAAAACAA+AGG | 0.574628 | 4.2:-20936858 | MS.gene28664:CDS |
| TTCGATAGTAGCGACGGTGA+AGG | 0.576294 | 4.2:-20937758 | MS.gene28664:CDS |
| TGTGGGAATGATGAATGTAA+AGG | 0.577026 | 4.2:-20937127 | MS.gene28664:CDS |
| GTGTCTTGGTGCTTGTAAAG+AGG | 0.579166 | 4.2:-20937563 | MS.gene28664:CDS |
| TTTCTCAACACCCCACAAGC+AGG | 0.582608 | 4.2:+20937091 | None:intergenic |
| AGGCAAATGGTGATTAGAGA+AGG | 0.583520 | 4.2:-20936920 | MS.gene28664:CDS |
| AAATGAGCTCCAAAGCTCGC+CGG | 0.590302 | 4.2:+20937929 | None:intergenic |
| GCAATTACTTGATCCAGAAG+AGG | 0.593346 | 4.2:-20936492 | MS.gene28664:CDS |
| CGAAAGCGACGGATTCTCGC+CGG | 0.595097 | 4.2:+20937792 | None:intergenic |
| CAATTACTTGATCCAGAAGA+GGG | 0.595894 | 4.2:-20936491 | MS.gene28664:CDS |
| CAACTGGCCGGAGTTCCCAC+CGG | 0.596053 | 4.2:-20937964 | MS.gene28664:CDS |
| CTAAAACACGTAACAAAGCA+CGG | 0.600884 | 4.2:+20936891 | None:intergenic |
| GAGTGAATTGGGGAAAGTTG+CGG | 0.600975 | 4.2:-20937239 | MS.gene28664:CDS |
| TGACAAGTTGCAATAGTGCA+AGG | 0.601203 | 4.2:-20936424 | MS.gene28664:CDS |
| ATCAAGTAATTGCAGAAGCA+GGG | 0.608315 | 4.2:+20936502 | None:intergenic |
| TGGTACCTAGAAATAGAAAG+AGG | 0.620101 | 4.2:-20936550 | MS.gene28664:CDS |
| AAATCTTGTTGGTGTTGAGG+AGG | 0.623752 | 4.2:-20937071 | MS.gene28664:CDS |
| TTTCGGAGATTTATAGAACA+GGG | 0.623906 | 4.2:-20937624 | MS.gene28664:CDS |
| CGGAGTCGGCAAGCTCCGGT+GGG | 0.624184 | 4.2:+20937949 | None:intergenic |
| CCTAACCAACTCATCTCCAA+AGG | 0.624383 | 4.2:+20936940 | None:intergenic |
| AATTCAAGAAGAGAGTGCTA+AGG | 0.633225 | 4.2:-20937353 | MS.gene28664:CDS |
| TCTTTACAAGCACCAAGACA+CGG | 0.634229 | 4.2:+20937565 | None:intergenic |
| TTGTTATATTATGTTCGACA+CGG | 0.636689 | 4.2:-20936749 | MS.gene28664:CDS |
| AGTTCGGGAAATGGCAGCCG+AGG | 0.637463 | 4.2:-20936591 | MS.gene28664:CDS |
| TGGGAATGATGAATGTAAAG+GGG | 0.637553 | 4.2:-20937125 | MS.gene28664:CDS |
| GACCATACCAGAGAGTGCCT+CGG | 0.640274 | 4.2:+20936574 | None:intergenic |
| AAACAAAGGAAATAGCAATG+AGG | 0.643519 | 4.2:-20936844 | MS.gene28664:CDS |
| GAATGTAAAGGGGATTTGGT+TGG | 0.646471 | 4.2:-20937115 | MS.gene28664:CDS |
| AAGGTGTTTGATGAAATTGA+CGG | 0.664534 | 4.2:-20937212 | MS.gene28664:CDS |
| GATCAAAGGTGCGATAACAC+CGG | 0.665102 | 4.2:+20937279 | None:intergenic |
| GTTACTAACCTCGAAAGCGA+CGG | 0.665428 | 4.2:+20937781 | None:intergenic |
| TGGGCTGTTTCGGCTCATGG+TGG | 0.671537 | 4.2:-20937172 | MS.gene28664:CDS |
| AGTAACTTCGATAGTAGCGA+CGG | 0.690293 | 4.2:-20937764 | MS.gene28664:CDS |
| AGATTCCATTCAACATACTG+CGG | 0.693690 | 4.2:+20936294 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAAGTATTTTAATGAGTTA+TGG | - | chr4.2:20937492-20937511 | MS.gene28664:CDS | 20.0% |
| ! | TTGTTATATTATGTTCGACA+CGG | - | chr4.2:20937528-20937547 | MS.gene28664:CDS | 25.0% |
| !! | ATGCAAAATCATTTGAAGTT+CGG | - | chr4.2:20937670-20937689 | MS.gene28664:CDS | 25.0% |
| !!! | CTGGTTTTGATTCATATAAA+GGG | - | chr4.2:20936962-20936981 | MS.gene28664:CDS | 25.0% |
| !!! | TGGTTTTGATTCATATAAAG+GGG | - | chr4.2:20936963-20936982 | MS.gene28664:CDS | 25.0% |
| AAACAAAGGAAATAGCAATG+AGG | - | chr4.2:20937433-20937452 | MS.gene28664:CDS | 30.0% | |
| AAAGTGGCATTTAGATTATC+TGG | - | chr4.2:20937579-20937598 | MS.gene28664:CDS | 30.0% | |
| AACAAAGGAAATAGCAATGA+GGG | - | chr4.2:20937434-20937453 | MS.gene28664:CDS | 30.0% | |
| AGGAAAAAGATTGTTAGTTC+TGG | - | chr4.2:20937873-20937892 | MS.gene28664:CDS | 30.0% | |
| ATGTAGTTCATGTTCTTGTT+GGG | - | chr4.2:20936878-20936897 | MS.gene28664:CDS | 30.0% | |
| GTCATATTCTTCCAAAACAA+AGG | - | chr4.2:20937419-20937438 | MS.gene28664:CDS | 30.0% | |
| TTCATTCAGAATATTGCCTT+TGG | - | chr4.2:20937321-20937340 | MS.gene28664:CDS | 30.0% | |
| TTGGAAGAATATGACCATTT+CGG | + | chr4.2:20937414-20937433 | None:intergenic | 30.0% | |
| TTTCGGAGATTTATAGAACA+GGG | - | chr4.2:20936653-20936672 | MS.gene28664:CDS | 30.0% | |
| ! | AAGGTGTTTGATGAAATTGA+CGG | - | chr4.2:20937065-20937084 | MS.gene28664:CDS | 30.0% |
| ! | ACAAACCTCTTTCTATTTCT+AGG | + | chr4.2:20937735-20937754 | None:intergenic | 30.0% |
| ! | TGCAAAATCATTTGAAGTTC+GGG | - | chr4.2:20937671-20937690 | MS.gene28664:CDS | 30.0% |
| ! | TTTAATGAGTTATGGCTTTG+TGG | - | chr4.2:20937500-20937519 | MS.gene28664:CDS | 30.0% |
| !! | TGCTAGTTTGTCTATGTTTT+TGG | + | chr4.2:20937904-20937923 | None:intergenic | 30.0% |
| !!! | CATTGCTATTTCCTTTGTTT+TGG | + | chr4.2:20937433-20937452 | None:intergenic | 30.0% |
| !!! | GCTGGTTTTGATTCATATAA+AGG | - | chr4.2:20936961-20936980 | MS.gene28664:CDS | 30.0% |
| AGATTCCATTCAACATACTG+CGG | + | chr4.2:20937986-20938005 | None:intergenic | 35.0% | |
| ATCAAGTAATTGCAGAAGCA+GGG | + | chr4.2:20937778-20937797 | None:intergenic | 35.0% | |
| CAATTACTTGATCCAGAAGA+GGG | - | chr4.2:20937786-20937805 | MS.gene28664:CDS | 35.0% | |
| CAATTCAGGTGAACTCAATT+GGG | - | chr4.2:20937298-20937317 | MS.gene28664:CDS | 35.0% | |
| CATTGCTTTCTTAGCTTCTT+CGG | + | chr4.2:20937610-20937629 | None:intergenic | 35.0% | |
| CTAAAACACGTAACAAAGCA+CGG | + | chr4.2:20937389-20937408 | None:intergenic | 35.0% | |
| CTTTCGGAGATTTATAGAAC+AGG | - | chr4.2:20936652-20936671 | MS.gene28664:CDS | 35.0% | |
| GAAGAAGCTAAGAAAGCAAT+GGG | - | chr4.2:20937609-20937628 | MS.gene28664:CDS | 35.0% | |
| GACAAATTCTGCCATAAAAC+CGG | + | chr4.2:20937640-20937659 | None:intergenic | 35.0% | |
| GATGAAATTGACGGAGAATT+CGG | - | chr4.2:20937074-20937093 | MS.gene28664:CDS | 35.0% | |
| GATGTAGTTCATGTTCTTGT+TGG | - | chr4.2:20936877-20936896 | MS.gene28664:CDS | 35.0% | |
| GTATGAAGAAACAAGCTTTG+AGG | - | chr4.2:20936791-20936810 | MS.gene28664:CDS | 35.0% | |
| GTGGGAATGATGAATGTAAA+GGG | - | chr4.2:20937151-20937170 | MS.gene28664:CDS | 35.0% | |
| TGAAGTTTCGATTCAAGAGT+TGG | - | chr4.2:20937551-20937570 | MS.gene28664:CDS | 35.0% | |
| TGATGAATGTAAAGGGGATT+TGG | - | chr4.2:20937158-20937177 | MS.gene28664:CDS | 35.0% | |
| TGGGAATGATGAATGTAAAG+GGG | - | chr4.2:20937152-20937171 | MS.gene28664:CDS | 35.0% | |
| TGGTACCTAGAAATAGAAAG+AGG | - | chr4.2:20937727-20937746 | MS.gene28664:CDS | 35.0% | |
| TGTGGGAATGATGAATGTAA+AGG | - | chr4.2:20937150-20937169 | MS.gene28664:CDS | 35.0% | |
| ! | AGGATGAAGATTGGTGATTT+GGG | - | chr4.2:20936769-20936788 | MS.gene28664:CDS | 35.0% |
| ! | ATCATTTGAAGTTCGGGAAA+TGG | - | chr4.2:20937677-20937696 | MS.gene28664:CDS | 35.0% |
| ! | CATGTTCTTGTTGGGTTTTT+GGG | - | chr4.2:20936886-20936905 | MS.gene28664:CDS | 35.0% |
| ! | TCATGTTCTTGTTGGGTTTT+TGG | - | chr4.2:20936885-20936904 | MS.gene28664:CDS | 35.0% |
| ! | TGAGGATGAGAAGTATGTTA+AGG | - | chr4.2:20936834-20936853 | MS.gene28664:CDS | 35.0% |
| !! | AATTCAAGAAGAGAGTGCTA+AGG | - | chr4.2:20936924-20936943 | MS.gene28664:CDS | 35.0% |
| !! | AGAACAGGGATTTTGACAAA+TGG | - | chr4.2:20936667-20936686 | MS.gene28664:CDS | 35.0% |
| !! | ATTTTGACGAGGATGAAGAT+TGG | - | chr4.2:20936760-20936779 | MS.gene28664:CDS | 35.0% |
| !! | GAACAGGGATTTTGACAAAT+GGG | - | chr4.2:20936668-20936687 | MS.gene28664:CDS | 35.0% |
| !! | TACGTGTTTTAGATCCGAAA+TGG | - | chr4.2:20937397-20937416 | MS.gene28664:CDS | 35.0% |
| !!! | ATGTGAGAGATATTTTGACG+AGG | - | chr4.2:20936749-20936768 | MS.gene28664:CDS | 35.0% |
| !!! | TCGAATAAGTTGCCATTTTC+CGG | + | chr4.2:20936413-20936432 | None:intergenic | 35.0% |
| AAGCTTGAAGAGCTTCATTC+AGG | - | chr4.2:20936436-20936455 | MS.gene28664:CDS | 40.0% | |
| ACGGCGTTGTTGAATATTTG+TGG | - | chr4.2:20937132-20937151 | MS.gene28664:CDS | 40.0% | |
| AGATTCCGCAGTATGTTGAA+TGG | - | chr4.2:20937978-20937997 | MS.gene28664:CDS | 40.0% | |
| AGGCAAATGGTGATTAGAGA+AGG | - | chr4.2:20937357-20937376 | MS.gene28664:CDS | 40.0% | |
| AGTAACTTCGATAGTAGCGA+CGG | - | chr4.2:20936513-20936532 | MS.gene28664:CDS | 40.0% | |
| ATCGAAAGAGGAAGCAATTC+AGG | - | chr4.2:20937284-20937303 | MS.gene28664:CDS | 40.0% | |
| ATGGGTGATGAAGAGTTAAC+CGG | - | chr4.2:20936283-20936302 | MS.gene28664:CDS | 40.0% | |
| CAAATGGTGATTAGAGAAGG+TGG | - | chr4.2:20937360-20937379 | MS.gene28664:CDS | 40.0% | |
| CGAAGAAGCTAAGAAAGCAA+TGG | - | chr4.2:20937608-20937627 | MS.gene28664:CDS | 40.0% | |
| CGGCGTTGTTGAATATTTGT+GGG | - | chr4.2:20937133-20937152 | MS.gene28664:CDS | 40.0% | |
| GATCAAGTAATTGCAGAAGC+AGG | + | chr4.2:20937779-20937798 | None:intergenic | 40.0% | |
| GCAATTACTTGATCCAGAAG+AGG | - | chr4.2:20937785-20937804 | MS.gene28664:CDS | 40.0% | |
| GCAATTCAGGTGAACTCAAT+TGG | - | chr4.2:20937297-20937316 | MS.gene28664:CDS | 40.0% | |
| GCAGTATGTTGAATGGAATC+TGG | - | chr4.2:20937985-20938004 | MS.gene28664:CDS | 40.0% | |
| GGAGAATTCGGATAATGCTT+GGG | - | chr4.2:20937086-20937105 | MS.gene28664:CDS | 40.0% | |
| GGTTAAGAGGTTTATGGTTG+AGG | - | chr4.2:20937227-20937246 | MS.gene28664:CDS | 40.0% | |
| GTGCTTGTAAAGAGGATATG+AGG | - | chr4.2:20936722-20936741 | MS.gene28664:CDS | 40.0% | |
| TAAGAGGTTTATGGTTGAGG+AGG | - | chr4.2:20937230-20937249 | MS.gene28664:CDS | 40.0% | |
| TCTTTACAAGCACCAAGACA+CGG | + | chr4.2:20936715-20936734 | None:intergenic | 40.0% | |
| TGACAAGTTGCAATAGTGCA+AGG | - | chr4.2:20937853-20937872 | MS.gene28664:CDS | 40.0% | |
| TGAGGAGGTTAAGAGGTTTA+TGG | - | chr4.2:20937221-20937240 | MS.gene28664:CDS | 40.0% | |
| TGGTTTAGCGAAGAAGCTTT+CGG | - | chr4.2:20936636-20936655 | MS.gene28664:CDS | 40.0% | |
| TTACCTGAATTTCCCTCTTC+TGG | + | chr4.2:20937801-20937820 | None:intergenic | 40.0% | |
| TTCTCTTACGCTTTCGATCA+GGG | - | chr4.2:20936381-20936400 | MS.gene28664:CDS | 40.0% | |
| TTGGATTGTGGGAGTGAATT+GGG | - | chr4.2:20937027-20937046 | MS.gene28664:CDS | 40.0% | |
| TTTCTCTTACGCTTTCGATC+AGG | - | chr4.2:20936380-20936399 | MS.gene28664:CDS | 40.0% | |
| TTTGGATTGTGGGAGTGAAT+TGG | - | chr4.2:20937026-20937045 | MS.gene28664:CDS | 40.0% | |
| ! | AAGGTTGTTTGTGTTGTTGC+TGG | - | chr4.2:20936943-20936962 | MS.gene28664:CDS | 40.0% |
| ! | GAATGTAAAGGGGATTTGGT+TGG | - | chr4.2:20937162-20937181 | MS.gene28664:CDS | 40.0% |
| ! | GAGGATGAAGATTGGTGATT+TGG | - | chr4.2:20936768-20936787 | MS.gene28664:CDS | 40.0% |
| ! | GCTTTTGATGCAGAGTGATT+TGG | - | chr4.2:20936591-20936610 | MS.gene28664:CDS | 40.0% |
| ! | GTTGTTTCAAAACCGTGTCT+TGG | - | chr4.2:20936700-20936719 | MS.gene28664:CDS | 40.0% |
| ! | TATTGCCTTTGGAGATGAGT+TGG | - | chr4.2:20937332-20937351 | MS.gene28664:CDS | 40.0% |
| ! | TCTTCTTGAGGTTGTTGTTG+AGG | - | chr4.2:20936816-20936835 | MS.gene28664:CDS | 40.0% |
| !! | AAATCTTGTTGGTGTTGAGG+AGG | - | chr4.2:20937206-20937225 | MS.gene28664:CDS | 40.0% |
| !! | AGATGAGTTGGTTAGGCAAA+TGG | - | chr4.2:20937344-20937363 | MS.gene28664:CDS | 40.0% |
| !! | AGCTTTGAGGAATCTTCTTG+AGG | - | chr4.2:20936804-20936823 | MS.gene28664:CDS | 40.0% |
| !! | GAGAAATCTTGTTGGTGTTG+AGG | - | chr4.2:20937203-20937222 | MS.gene28664:CDS | 40.0% |
| !! | GCGTTGATTTCTCGTACAAT+GGG | - | chr4.2:20936566-20936585 | MS.gene28664:CDS | 40.0% |
| !! | TCAAGAGTTGGCTTTGAAAG+TGG | - | chr4.2:20937563-20937582 | MS.gene28664:CDS | 40.0% |
| !! | TGCGTTGATTTCTCGTACAA+TGG | - | chr4.2:20936565-20936584 | MS.gene28664:CDS | 40.0% |
| !!! | AAAGGGGTTTTGATTAGTGC+CGG | - | chr4.2:20936979-20936998 | MS.gene28664:CDS | 40.0% |
| !!! | GTTTTTGGGTTCTAATGAGG+TGG | - | chr4.2:20936900-20936919 | MS.gene28664:CDS | 40.0% |
| !!! | TGGGTTTTTGGGTTCTAATG+AGG | - | chr4.2:20936897-20936916 | MS.gene28664:CDS | 40.0% |
| AAGAAAGCAATGGGAGATGC+CGG | - | chr4.2:20937618-20937637 | MS.gene28664:CDS | 45.0% | |
| CAATCCAAAACCCGGATCAA+AGG | + | chr4.2:20937015-20937034 | None:intergenic | 45.0% | |
| CAGGCTTGTGAAATCGAAAG+AGG | - | chr4.2:20937272-20937291 | MS.gene28664:CDS | 45.0% | |
| CCTAACCAACTCATCTCCAA+AGG | + | chr4.2:20937340-20937359 | None:intergenic | 45.0% | |
| CGGAGAATTCGGATAATGCT+TGG | - | chr4.2:20937085-20937104 | MS.gene28664:CDS | 45.0% | |
| GAGTGAATTGGGGAAAGTTG+CGG | - | chr4.2:20937038-20937057 | MS.gene28664:CDS | 45.0% | |
| GATCCAGAAGAGGGAAATTC+AGG | - | chr4.2:20937795-20937814 | MS.gene28664:CDS | 45.0% | |
| GGATAATGCTTGGGCTGTTT+CGG | - | chr4.2:20937095-20937114 | MS.gene28664:CDS | 45.0% | |
| GTGTTATCGCACCTTTGATC+CGG | - | chr4.2:20937001-20937020 | MS.gene28664:CDS | 45.0% | |
| GTTACTAACCTCGAAAGCGA+CGG | + | chr4.2:20936499-20936518 | None:intergenic | 45.0% | |
| TGGATTGTGGGAGTGAATTG+GGG | - | chr4.2:20937028-20937047 | MS.gene28664:CDS | 45.0% | |
| TGTTATCGCACCTTTGATCC+GGG | - | chr4.2:20937002-20937021 | MS.gene28664:CDS | 45.0% | |
| ! | ATGCTGTGTCGACGTTTATC+AGG | - | chr4.2:20937253-20937272 | MS.gene28664:CDS | 45.0% |
| ! | ATTTGGTTGGTCCTGCTTGT+GGG | - | chr4.2:20937175-20937194 | MS.gene28664:CDS | 45.0% |
| ! | GATCAAAGGTGCGATAACAC+CGG | + | chr4.2:20937001-20937020 | None:intergenic | 45.0% |
| !! | CCTTTGGAGATGAGTTGGTT+AGG | - | chr4.2:20937337-20937356 | MS.gene28664:CDS | 45.0% |
| !! | GGGGTGTTGAGAAATCTTGT+TGG | - | chr4.2:20937195-20937214 | MS.gene28664:CDS | 45.0% |
| !! | GTGTCTTGGTGCTTGTAAAG+AGG | - | chr4.2:20936714-20936733 | MS.gene28664:CDS | 45.0% |
| !! | TTGGTGTTGAGGAGGTTAAG+AGG | - | chr4.2:20937214-20937233 | MS.gene28664:CDS | 45.0% |
| !!! | AATGGGAGATGCCGGTTTTA+TGG | - | chr4.2:20937626-20937645 | MS.gene28664:CDS | 45.0% |
| !!! | TGATCCGGGTTTTGGATTGT+GGG | - | chr4.2:20937016-20937035 | MS.gene28664:CDS | 45.0% |
| !!! | TTGATCCGGGTTTTGGATTG+TGG | - | chr4.2:20937015-20937034 | MS.gene28664:CDS | 45.0% |
| AAATGAGCTCCAAAGCTCGC+CGG | + | chr4.2:20936351-20936370 | None:intergenic | 50.0% | |
| CACTCCCACAATCCAAAACC+CGG | + | chr4.2:20937023-20937042 | None:intergenic | 50.0% | |
| CTTTCGATCAGGGTCTTTGC+CGG | - | chr4.2:20936391-20936410 | MS.gene28664:CDS | 50.0% | |
| GTAGCGTTTGCGAAACTCGA+TGG | - | chr4.2:20936616-20936635 | MS.gene28664:CDS | 50.0% | |
| GTTAACCGGAGAGTCTCAAC+TGG | - | chr4.2:20936297-20936316 | MS.gene28664:CDS | 50.0% | |
| TCAGGGTCTTTGCCGGAAAA+TGG | - | chr4.2:20936398-20936417 | MS.gene28664:CDS | 50.0% | |
| TTCGATAGTAGCGACGGTGA+AGG | - | chr4.2:20936519-20936538 | MS.gene28664:CDS | 50.0% | |
| TTTCTCAACACCCCACAAGC+AGG | + | chr4.2:20937189-20937208 | None:intergenic | 50.0% | |
| ! | GATTTGGTTGGTCCTGCTTG+TGG | - | chr4.2:20937174-20937193 | MS.gene28664:CDS | 50.0% |
| ! | TTTGGTTGGTCCTGCTTGTG+GGG | - | chr4.2:20937176-20937195 | MS.gene28664:CDS | 50.0% |
| !! | GTGAAGGAGTGTCACGATCT+GGG | - | chr4.2:20936535-20936554 | MS.gene28664:CDS | 50.0% |
| GCCGCTGAAAACAGCGATTC+CGG | - | chr4.2:20936466-20936485 | MS.gene28664:CDS | 55.0% | |
| GGCACTCTCTGGTATGGTCA+TGG | - | chr4.2:20937707-20937726 | MS.gene28664:CDS | 55.0% | |
| ! | CGCACCTTTGATCCGGGTTT+TGG | - | chr4.2:20937008-20937027 | MS.gene28664:CDS | 55.0% |
| ! | TTCGGCTCATGGTGGTGTCA+CGG | - | chr4.2:20937113-20937132 | MS.gene28664:CDS | 55.0% |
| !! | GACCATACCAGAGAGTGCCT+CGG | + | chr4.2:20937706-20937725 | None:intergenic | 55.0% |
| !! | GCCGGAATCGCTGTTTTCAG+CGG | + | chr4.2:20936470-20936489 | None:intergenic | 55.0% |
| !! | GGTGAAGGAGTGTCACGATC+TGG | - | chr4.2:20936534-20936553 | MS.gene28664:CDS | 55.0% |
| ACCGGAGAGTCTCAACTGGC+CGG | - | chr4.2:20936301-20936320 | MS.gene28664:CDS | 60.0% | |
| AGTTCGGGAAATGGCAGCCG+AGG | - | chr4.2:20937686-20937705 | MS.gene28664:CDS | 60.0% | |
| TCCGGCCAGTTGAGACTCTC+CGG | + | chr4.2:20936305-20936324 | None:intergenic | 60.0% | |
| TGGGGAAAGTTGCGGCTGCA+AGG | - | chr4.2:20937046-20937065 | MS.gene28664:CDS | 60.0% | |
| ! | AGCCGAGGCACTCTCTGGTA+TGG | - | chr4.2:20937701-20937720 | MS.gene28664:CDS | 60.0% |
| ! | CGAAAGCGACGGATTCTCGC+CGG | + | chr4.2:20936488-20936507 | None:intergenic | 60.0% |
| ! | GCGAGAATCCGTCGCTTTCG+AGG | - | chr4.2:20936488-20936507 | MS.gene28664:CDS | 60.0% |
| ! | GCTTGGGCTGTTTCGGCTCA+TGG | - | chr4.2:20937102-20937121 | MS.gene28664:CDS | 60.0% |
| ! | TGGGCTGTTTCGGCTCATGG+TGG | - | chr4.2:20937105-20937124 | MS.gene28664:CDS | 60.0% |
| CAACTGGCCGGAGTTCCCAC+CGG | - | chr4.2:20936313-20936332 | MS.gene28664:CDS | 65.0% | |
| GCAAGCTCCGGTGGGAACTC+CGG | + | chr4.2:20936323-20936342 | None:intergenic | 65.0% | |
| GCTCCAAAGCTCGCCGGAGT+CGG | + | chr4.2:20936345-20936364 | None:intergenic | 65.0% | |
| ! | ATGGCAGCCGAGGCACTCTC+TGG | - | chr4.2:20937696-20937715 | MS.gene28664:CDS | 65.0% |
| !! | TTGCCGACTCCGGCGAGCTT+TGG | - | chr4.2:20936339-20936358 | MS.gene28664:CDS | 65.0% |
| CGGAGTCGGCAAGCTCCGGT+GGG | + | chr4.2:20936331-20936350 | None:intergenic | 70.0% | |
| TCGCCGGAGTCGGCAAGCTC+CGG | + | chr4.2:20936335-20936354 | None:intergenic | 70.0% | |
| !! | CCACCGGAGCTTGCCGACTC+CGG | - | chr4.2:20936329-20936348 | MS.gene28664:CDS | 70.0% |
| CCGGAGTCGGCAAGCTCCGG+TGG | + | chr4.2:20936332-20936351 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 20936283 | 20938016 | 20936283 | ID=MS.gene28664 |
| chr4.2 | mRNA | 20936283 | 20938016 | 20936283 | ID=MS.gene28664.t1;Parent=MS.gene28664 |
| chr4.2 | exon | 20936283 | 20938016 | 20936283 | ID=MS.gene28664.t1.exon1;Parent=MS.gene28664.t1 |
| chr4.2 | CDS | 20936283 | 20938016 | 20936283 | ID=cds.MS.gene28664.t1;Parent=MS.gene28664.t1 |
| Gene Sequence |
| Protein sequence |
