Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020400.t1 | XP_003602965.1 | 100 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 4.00E-126 | 460.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020400.t1 | Q6DFI2 | 37.3 | 169 | 98 | 4 | 1 | 166 | 1 | 164 | 3.4e-25 | 116.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020400.t1 | G7J5Q0 | 100.0 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 2.9e-126 | 460.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006721 | MS.gene020400 | PPI |
| MS.gene066933 | MS.gene020400 | PPI |
| MS.gene016301 | MS.gene020400 | PPI |
| MS.gene045454 | MS.gene020400 | PPI |
| MS.gene045457 | MS.gene020400 | PPI |
| MS.gene018045 | MS.gene020400 | PPI |
| MS.gene031579 | MS.gene020400 | PPI |
| MS.gene058354 | MS.gene020400 | PPI |
| MS.gene59873 | MS.gene020400 | PPI |
| MS.gene99541 | MS.gene020400 | PPI |
| MS.gene73833 | MS.gene020400 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020400.t1 | MTR_3g100940 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 9.92e-170 | 466 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020400.t1 | AT1G47640 | 87.225 | 227 | 29 | 0 | 1 | 227 | 1 | 227 | 1.74e-149 | 415 |
Find 0 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTATCATAATAAAT+AGG | + | 51443:52331-52350 | None:intergenic | 10.0% |
| !!! | TAAAATTTTGAATTATTATG+AGG | - | 51443:52031-52050 | MS.gene020400:intron | 10.0% |
| !! | ACAACAAACATAATAAAATA+TGG | + | 51443:52586-52605 | None:intergenic | 15.0% |
| !! | CTATAAGAATATATGAAAAT+TGG | + | 51443:52559-52578 | None:intergenic | 15.0% |
| !! | TGAGATAATTACTATAATTA+CGG | - | 51443:51320-51339 | MS.gene020400:intron | 15.0% |
| !! | TTTATCATAATAAATAGGAA+TGG | + | 51443:52326-52345 | None:intergenic | 15.0% |
| !!! | AAACTAATTTAAAGGTATTT+TGG | + | 51443:51287-51306 | None:intergenic | 15.0% |
| !!! | AACTAATTTAAAGGTATTTT+GGG | + | 51443:51286-51305 | None:intergenic | 15.0% |
| !!! | AGTTTTAAAAAAATAGAGAA+AGG | + | 51443:52143-52162 | None:intergenic | 15.0% |
| !!! | GTTTTTCCTAAATTATAATA+AGG | - | 51443:51088-51107 | MS.gene020400:intron | 15.0% |
| !!! | TATTGATTTTAAGAGAAAAA+TGG | + | 51443:51971-51990 | None:intergenic | 15.0% |
| !!! | TTTTATAATCCAACATTAAT+TGG | - | 51443:53159-53178 | MS.gene020400:intron | 15.0% |
| !! | AAATTATCTCCTAATTACAT+TGG | + | 51443:51486-51505 | None:intergenic | 20.0% |
| !! | AACATCAATAAAACCTATTA+AGG | + | 51443:52654-52673 | None:intergenic | 20.0% |
| !! | ACTACACCTTATTATAATTT+AGG | + | 51443:51097-51116 | None:intergenic | 20.0% |
| !! | CCATTAAGAAACTAATTTAA+AGG | + | 51443:51295-51314 | None:intergenic | 20.0% |
| !! | GAGATAATTACTATAATTAC+GGG | - | 51443:51321-51340 | MS.gene020400:intron | 20.0% |
| !! | TAAATAAACAAAAGATAGCA+CGG | + | 51443:51738-51757 | None:intergenic | 20.0% |
| !! | TATTAGTTAGAGAGTTAATT+AGG | + | 51443:50926-50945 | None:intergenic | 20.0% |
| !! | TGTAAAAAATTCAAAACTCT+AGG | + | 51443:53097-53116 | None:intergenic | 20.0% |
| !!! | AAAAAAATAGAGAAAGGTTT+TGG | + | 51443:52137-52156 | None:intergenic | 20.0% |
| !!! | AAAAAATAGAGAAAGGTTTT+GGG | + | 51443:52136-52155 | None:intergenic | 20.0% |
| !!! | AATGATTTAAAACAAGTAGA+GGG | - | 51443:53628-53647 | MS.gene020400:intron | 20.0% |
| !!! | ATTTTATTATGTTTGTTGTC+TGG | - | 51443:52587-52606 | MS.gene020400:intron | 20.0% |
| !!! | CCTTTAAATTAGTTTCTTAA+TGG | - | 51443:51292-51311 | MS.gene020400:intron | 20.0% |
| !!! | TTTTAAATTTATGTGCATCT+TGG | - | 51443:52794-52813 | MS.gene020400:intron | 20.0% |
| !!! | TTTTTACAATCCACATTAAT+TGG | - | 51443:53109-53128 | MS.gene020400:intron | 20.0% |
| ! | AAATAAACAAAAGATAGCAC+GGG | + | 51443:51737-51756 | None:intergenic | 25.0% |
| ! | ACAAGTATATAATAGGAATG+AGG | + | 51443:53379-53398 | None:intergenic | 25.0% |
| ! | ACTTAAATTTCAGCATAAGT+AGG | - | 51443:52347-52366 | MS.gene020400:intron | 25.0% |
| ! | CAAGTATATAATAGGAATGA+GGG | + | 51443:53378-53397 | None:intergenic | 25.0% |
| ! | CTGTTATTGAGAAATTACAA+TGG | - | 51443:52513-52532 | MS.gene020400:intron | 25.0% |
| ! | TAGAGGATTAGAATTTACTT+GGG | - | 51443:52974-52993 | MS.gene020400:intron | 25.0% |
| ! | TAGATACAAGAGAATATTTG+TGG | - | 51443:51524-51543 | MS.gene020400:CDS | 25.0% |
| ! | TATCCGAGAGAAAAAAAAAA+TGG | + | 51443:53058-53077 | None:intergenic | 25.0% |
| ! | TGCATTATTCCAATTAATGT+TGG | + | 51443:53171-53190 | None:intergenic | 25.0% |
| ! | TTAAATCATTATCTCTAGCA+GGG | + | 51443:51610-51629 | None:intergenic | 25.0% |
| ! | TTAGGTTTGAAGATGTAAAA+AGG | + | 51443:50908-50927 | None:intergenic | 25.0% |
| ! | TTGTACTAAATAACATATCG+TGG | + | 51443:53828-53847 | None:intergenic | 25.0% |
| ! | TTTAAATCATTATCTCTAGC+AGG | + | 51443:51611-51630 | None:intergenic | 25.0% |
| !! | AAAAATAGAGAAAGGTTTTG+GGG | + | 51443:52135-52154 | None:intergenic | 25.0% |
| !! | AGAGATAATGATTTAAAGCA+GGG | - | 51443:51614-51633 | MS.gene020400:intron | 25.0% |
| !! | CAATGATTTAAAACAAGTAG+AGG | - | 51443:53627-53646 | MS.gene020400:intron | 25.0% |
| !! | TAGAGATAATGATTTAAAGC+AGG | - | 51443:51613-51632 | MS.gene020400:intron | 25.0% |
| !! | TTGTCTGGAATAATAACAAA+TGG | - | 51443:52602-52621 | MS.gene020400:intron | 25.0% |
| !!! | AAGCCATTTTTTTTTTCTCT+CGG | - | 51443:53052-53071 | MS.gene020400:intron | 25.0% |
| !!! | ACTGATGTCATTTTAATTTG+AGG | - | 51443:53490-53509 | MS.gene020400:intron | 25.0% |
| !!! | CGTTTGGTATATTTTGTTTA+TGG | - | 51443:52245-52264 | MS.gene020400:intron | 25.0% |
| !!! | CTACTTGTTTTAAATCATTG+CGG | + | 51443:53627-53646 | None:intergenic | 25.0% |
| !!! | GAATGAAAAAGTACTTACAA+AGG | + | 51443:50695-50714 | None:intergenic | 25.0% |
| !!! | TACTTGTTTTAAATCATTGC+GGG | + | 51443:53626-53645 | None:intergenic | 25.0% |
| !!! | TGTTTTTCAGGAATTTTTGA+AGG | - | 51443:52628-52647 | MS.gene020400:intron | 25.0% |
| !!! | TTTTTAAAACTCCCAAACAA+GGG | - | 51443:52152-52171 | MS.gene020400:CDS | 25.0% |
| !!! | TTTTTTAAAACTCCCAAACA+AGG | - | 51443:52151-52170 | MS.gene020400:CDS | 25.0% |
| AATCCCTAACTCAAAATGAT+TGG | + | 51443:51661-51680 | None:intergenic | 30.0% | |
| ACAAAATATACCAAACGCTT+AGG | + | 51443:52242-52261 | None:intergenic | 30.0% | |
| ACCTACTTTCACACTTATTA+AGG | + | 51443:51410-51429 | None:intergenic | 30.0% | |
| AGTTTGTCAATGTTGTTATG+TGG | - | 51443:53193-53212 | MS.gene020400:intron | 30.0% | |
| ATACAAGAGAATATTTGTGG+AGG | - | 51443:51527-51546 | MS.gene020400:CDS | 30.0% | |
| CATAATAAATAGGAATGGCA+AGG | + | 51443:52321-52340 | None:intergenic | 30.0% | |
| CTAGAGGATTAGAATTTACT+TGG | - | 51443:52973-52992 | MS.gene020400:intron | 30.0% | |
| CTATATAACAACACTCATTG+AGG | + | 51443:53757-53776 | None:intergenic | 30.0% | |
| CTATTATATACTTGTGTGCT+GGG | - | 51443:53384-53403 | MS.gene020400:intron | 30.0% | |
| GTGTTTCAAATAGATTACAG+TGG | - | 51443:53849-53868 | MS.gene020400:intron | 30.0% | |
| TAAATTTCAGCATAAGTAGG+CGG | - | 51443:52350-52369 | MS.gene020400:intron | 30.0% | |
| TATCTCCTAATTACATTGGA+GGG | + | 51443:51482-51501 | None:intergenic | 30.0% | |
| TCAATGTTGTTATGTGGTAT+AGG | - | 51443:53199-53218 | MS.gene020400:intron | 30.0% | |
| TCCTTAATAAGTGTGAAAGT+AGG | - | 51443:51406-51425 | MS.gene020400:intron | 30.0% | |
| TTAAAGAAACCAACAAGGAA+AGG | - | 51443:51910-51929 | MS.gene020400:CDS | 30.0% | |
| TTATCTCCTAATTACATTGG+AGG | + | 51443:51483-51502 | None:intergenic | 30.0% | |
| TTTCTTTAACTCCCAAACAA+GGG | + | 51443:51899-51918 | None:intergenic | 30.0% | |
| ! | AATCACTGGTCTATTAGATA+TGG | - | 51443:54037-54056 | MS.gene020400:CDS | 30.0% |
| ! | AATGATTTAAAGCAGGGATA+GGG | - | 51443:51620-51639 | MS.gene020400:intron | 30.0% |
| ! | CTGTGTTATTCCAATTAATG+TGG | + | 51443:53122-53141 | None:intergenic | 30.0% |
| ! | GATTTTCTTATAACCGTTCA+TGG | - | 51443:51549-51568 | MS.gene020400:CDS | 30.0% |
| ! | TAATGATTTAAAGCAGGGAT+AGG | - | 51443:51619-51638 | MS.gene020400:intron | 30.0% |
| ! | TGATAAAAGACCTGTCTTTT+TGG | - | 51443:54010-54029 | MS.gene020400:intron | 30.0% |
| ! | TGTCTTCATCTAAAACCTTA+AGG | - | 51443:51781-51800 | MS.gene020400:intron | 30.0% |
| !! | AAAAAGTACTTACAAAGGTG+TGG | + | 51443:50690-50709 | None:intergenic | 30.0% |
| !! | AAAATAGAGAAAGGTTTTGG+GGG | + | 51443:52134-52153 | None:intergenic | 30.0% |
| !! | ATTTGGGGGAACTTTAAAAT+TGG | - | 51443:52087-52106 | MS.gene020400:intron | 30.0% |
| !! | GAATTTTTGAAGGCCTTAAT+AGG | - | 51443:52638-52657 | MS.gene020400:intron | 30.0% |
| !!! | AACAAATGGCTTTGTTTTTC+AGG | - | 51443:52616-52635 | MS.gene020400:intron | 30.0% |
| !!! | ATAGGTTTTATTGATGTTGC+TGG | - | 51443:52656-52675 | MS.gene020400:intron | 30.0% |
| !!! | ATCATTTTGAGTTAGGGATT+TGG | - | 51443:51661-51680 | MS.gene020400:intron | 30.0% |
| !!! | ATTTTAAAGTTCCCCCAAAT+TGG | + | 51443:52087-52106 | None:intergenic | 30.0% |
| !!! | TAGCCAATCATTTTGAGTTA+GGG | - | 51443:51655-51674 | MS.gene020400:intron | 30.0% |
| !!! | TCATTTTGAGTTAGGGATTT+GGG | - | 51443:51662-51681 | MS.gene020400:intron | 30.0% |
| !!! | TTTTAAAGTTCCCCCAAATT+GGG | + | 51443:52086-52105 | None:intergenic | 30.0% |
| AAACACTACGCTACAGTAAA+TGG | + | 51443:54112-54131 | None:intergenic | 35.0% | |
| AAGTAGCCAAACAAATAAGC+TGG | + | 51443:50982-51001 | None:intergenic | 35.0% | |
| AATAGCAAAAGAAACACCAG+AGG | + | 51443:52853-52872 | None:intergenic | 35.0% | |
| AATCACAAGTTTCAAGCAGT+TGG | - | 51443:52725-52744 | MS.gene020400:intron | 35.0% | |
| ACTGGGTTAAGGCAAAATAA+AGG | + | 51443:52682-52701 | None:intergenic | 35.0% | |
| ACTTATAAAAGCCATCACCA+AGG | + | 51443:54218-54237 | None:intergenic | 35.0% | |
| AGATACCCTCCAATGTAATT+AGG | - | 51443:51474-51493 | MS.gene020400:CDS | 35.0% | |
| AGATCTGAGTATGATACACT+CGG | - | 51443:50804-50823 | MS.gene020400:intron | 35.0% | |
| AGTAAAGACCTTGTGATAGA+TGG | + | 51443:53425-53444 | None:intergenic | 35.0% | |
| ATAATAGGAATGAGGGTCTT+GGG | + | 51443:53371-53390 | None:intergenic | 35.0% | |
| ATCAATGCATAAAGCCCAAA+GGG | - | 51443:52384-52403 | MS.gene020400:intron | 35.0% | |
| CCAGCACACAAGTATATAAT+AGG | + | 51443:53386-53405 | None:intergenic | 35.0% | |
| CCTATTATATACTTGTGTGC+TGG | - | 51443:53383-53402 | MS.gene020400:intron | 35.0% | |
| CTTCTCTAACTTTCACTTGT+TGG | - | 51443:52876-52895 | MS.gene020400:intron | 35.0% | |
| GTGATTCTATCCAAAAAGAC+AGG | + | 51443:54023-54042 | None:intergenic | 35.0% | |
| GTTTCTTTAACTCCCAAACA+AGG | + | 51443:51900-51919 | None:intergenic | 35.0% | |
| TACATGTTACACACCTGATA+TGG | + | 51443:51037-51056 | None:intergenic | 35.0% | |
| TATAATAGGAATGAGGGTCT+TGG | + | 51443:53372-53391 | None:intergenic | 35.0% | |
| TATCAATGCATAAAGCCCAA+AGG | - | 51443:52383-52402 | MS.gene020400:intron | 35.0% | |
| TATGTTTAACCCCCCAATTT+GGG | - | 51443:52071-52090 | MS.gene020400:intron | 35.0% | |
| TGAGAAGAAAAATCCCAGTT+AGG | + | 51443:53695-53714 | None:intergenic | 35.0% | |
| TTCTTTAACTCCCAAACAAG+GGG | + | 51443:51898-51917 | None:intergenic | 35.0% | |
| TTTCTGCACTTTATCTGTAC+AGG | - | 51443:53289-53308 | MS.gene020400:intron | 35.0% | |
| ! | AGATATTTCTGTGAGTCAAC+TGG | + | 51443:52700-52719 | None:intergenic | 35.0% |
| ! | GATATTTCTGTGAGTCAACT+GGG | + | 51443:52699-52718 | None:intergenic | 35.0% |
| ! | GCCTAAAAGCTTAAGCTTTT+GGG | - | 51443:52454-52473 | MS.gene020400:intron | 35.0% |
| ! | GTCTTTTTGGATAGAATCAC+TGG | - | 51443:54023-54042 | MS.gene020400:CDS | 35.0% |
| ! | TCCCAAAAGCTTAAGCTTTT+AGG | + | 51443:52458-52477 | None:intergenic | 35.0% |
| ! | TCTAGCACTCACTCTTTTAT+TGG | - | 51443:53545-53564 | MS.gene020400:intron | 35.0% |
| ! | TTTAAAGTTCCCCCAAATTG+GGG | + | 51443:52085-52104 | None:intergenic | 35.0% |
| !! | TGATAGCTTTGATCCATATC+AGG | - | 51443:51021-51040 | MS.gene020400:intron | 35.0% |
| !!! | AAATAGAGAAAGGTTTTGGG+GGG | + | 51443:52133-52152 | None:intergenic | 35.0% |
| !!! | GTAGCCAATCATTTTGAGTT+AGG | - | 51443:51654-51673 | MS.gene020400:intron | 35.0% |
| !!! | TGGTGATGGCTTTTATAAGT+TGG | - | 51443:54218-54237 | MS.gene020400:CDS | 35.0% |
| !!! | TTGTTTGGCTACTTTTCTCA+AGG | - | 51443:50988-51007 | MS.gene020400:intron | 35.0% |
| AAACCAACAAGGAAAGGAGA+TGG | - | 51443:51916-51935 | MS.gene020400:CDS | 40.0% | |
| AACTCGCAAACAAAGCCTTA+AGG | + | 51443:51799-51818 | None:intergenic | 40.0% | |
| AACTGTGCGATTCTCACTTT+CGG | - | 51443:50641-50660 | MS.gene020400:CDS | 40.0% | |
| AAGTTTCAAGCAGTTGGACT+TGG | - | 51443:52731-52750 | MS.gene020400:intron | 40.0% | |
| ACAAATAAGCTGGCAGAGAA+AGG | + | 51443:50972-50991 | None:intergenic | 40.0% | |
| AGATACTGCGGAATCTTGAA+GGG | + | 51443:51711-51730 | None:intergenic | 40.0% | |
| ATGTTTAACCCCCCAATTTG+GGG | - | 51443:52072-52091 | MS.gene020400:intron | 40.0% | |
| CAAATAGAACCCACACAATG+TGG | + | 51443:53592-53611 | None:intergenic | 40.0% | |
| CACAAGAGTGAAGCATGAAA+TGG | + | 51443:51188-51207 | None:intergenic | 40.0% | |
| CCTAGAGGCTAATGCAAATT+TGG | - | 51443:53013-53032 | MS.gene020400:intron | 40.0% | |
| CTAATTCCTTCCATTCTGGA+GGG | - | 51443:51125-51144 | MS.gene020400:intron | 40.0% | |
| GCTATAGCATTGTAGCATAG+TGG | - | 51443:53873-53892 | MS.gene020400:CDS | 40.0% | |
| GCTATAGCGCAATTGTTTAG+TGG | - | 51443:53779-53798 | MS.gene020400:intron | 40.0% | |
| GGAGAAAGAGAGGTAAAAGT+TGG | + | 51443:53962-53981 | None:intergenic | 40.0% | |
| GGGAGTTAAAGAAACCAACA+AGG | - | 51443:51905-51924 | MS.gene020400:CDS | 40.0% | |
| GGGTCTTGGGTTTATTCTTT+CGG | + | 51443:53358-53377 | None:intergenic | 40.0% | |
| GGTCTATTAGATATGGTGCT+TGG | - | 51443:54044-54063 | MS.gene020400:CDS | 40.0% | |
| GTATGTTTAACCCCCCAATT+TGG | - | 51443:52070-52089 | MS.gene020400:intron | 40.0% | |
| GTTGCTAACACTACCTAACT+GGG | - | 51443:53679-53698 | MS.gene020400:intron | 40.0% | |
| TATAACCGTTCATGGTAGCT+GGG | - | 51443:51557-51576 | MS.gene020400:CDS | 40.0% | |
| TCTAATTCCTTCCATTCTGG+AGG | - | 51443:51124-51143 | MS.gene020400:intron | 40.0% | |
| TCTCGCTACAGCATTAGTAA+AGG | - | 51443:50854-50873 | MS.gene020400:intron | 40.0% | |
| TCTCTGCCAGCTTATTTGTT+TGG | - | 51443:50973-50992 | MS.gene020400:intron | 40.0% | |
| TGATGTTCTCCTTCCTTGAT+CGG | - | 51443:52827-52846 | MS.gene020400:intron | 40.0% | |
| TGATTCTGTACTGCATAGGT+TGG | - | 51443:52932-52951 | MS.gene020400:intron | 40.0% | |
| TGTAGCGAGATAAACAACTG+CGG | + | 51443:50844-50863 | None:intergenic | 40.0% | |
| TGTTGCTAACACTACCTAAC+TGG | - | 51443:53678-53697 | MS.gene020400:intron | 40.0% | |
| TTAAAGTTCCCCCAAATTGG+GGG | + | 51443:52084-52103 | None:intergenic | 40.0% | |
| TTATAACCGTTCATGGTAGC+TGG | - | 51443:51556-51575 | MS.gene020400:CDS | 40.0% | |
| ! | AAGTACTTACAAAGGTGTGG+CGG | + | 51443:50687-50706 | None:intergenic | 40.0% |
| ! | AGCTATTTGAGACGTGGATT+GGG | - | 51443:54151-54170 | MS.gene020400:intron | 40.0% |
| ! | AGCTCTAATTCCTTCCATTC+TGG | - | 51443:51121-51140 | MS.gene020400:intron | 40.0% |
| ! | CCAAATTTGCATTAGCCTCT+AGG | + | 51443:53016-53035 | None:intergenic | 40.0% |
| ! | CGCCTAAAAGCTTAAGCTTT+TGG | - | 51443:52453-52472 | MS.gene020400:intron | 40.0% |
| ! | GCACTCACTCTTTTATTGGA+TGG | - | 51443:53549-53568 | MS.gene020400:intron | 40.0% |
| ! | TTTTGAGCTCTTCACATCCT+TGG | - | 51443:54198-54217 | MS.gene020400:intron | 40.0% |
| !! | ACTTGGGAGTACATTTTGCA+GGG | - | 51443:52990-53009 | MS.gene020400:intron | 40.0% |
| !! | TACTTGGGAGTACATTTTGC+AGG | - | 51443:52989-53008 | MS.gene020400:intron | 40.0% |
| !! | TGTTGGTGTCATTTCTCTTG+TGG | - | 51443:52893-52912 | MS.gene020400:intron | 40.0% |
| !! | TTAGGCTTTGTTTGCGAGTT+GGG | + | 51443:52224-52243 | None:intergenic | 40.0% |
| !! | TTGCTGATTCTGTACTGCAT+AGG | - | 51443:52928-52947 | MS.gene020400:intron | 40.0% |
| !! | TTTGTTTGCGAGTTGGGTTT+TGG | + | 51443:52218-52237 | None:intergenic | 40.0% |
| !!! | CTTTGTTTGCGAGTTTTGAG+GGG | - | 51443:51804-51823 | MS.gene020400:intron | 40.0% |
| !!! | CTTTTGGGATAGATGGTTCA+TGG | - | 51443:52469-52488 | MS.gene020400:intron | 40.0% |
| !!! | GCTTAAGCTTTTGGGATAGA+TGG | - | 51443:52462-52481 | MS.gene020400:intron | 40.0% |
| !!! | GCTTTGTTTGCGAGTTTTGA+GGG | - | 51443:51803-51822 | MS.gene020400:intron | 40.0% |
| AGACCTTGTGATAGATGGCA+TGG | + | 51443:53420-53439 | None:intergenic | 45.0% | |
| AGCTCAAAACCGACCACTTT+GGG | + | 51443:54187-54206 | None:intergenic | 45.0% | |
| ATAACCGTTCATGGTAGCTG+GGG | - | 51443:51558-51577 | MS.gene020400:CDS | 45.0% | |
| ATAGAACCCACACAATGTGG+TGG | + | 51443:53589-53608 | None:intergenic | 45.0% | |
| ATCATTGCCATCTGCTCTCT+TGG | + | 51443:51454-51473 | None:intergenic | 45.0% | |
| CAACAAGGAAAGGAGATGGA+GGG | - | 51443:51920-51939 | MS.gene020400:CDS | 45.0% | |
| CTACCATGCCATCTATCACA+AGG | - | 51443:53414-53433 | MS.gene020400:intron | 45.0% | |
| GAAGCCAGTGTTGTCAATAG+CGG | + | 51443:53928-53947 | None:intergenic | 45.0% | |
| GAGATACTGCGGAATCTTGA+AGG | + | 51443:51712-51731 | None:intergenic | 45.0% | |
| GATACTGCGGAATCTTGAAG+GGG | + | 51443:51710-51729 | None:intergenic | 45.0% | |
| GCAAACAAAGCCTAAGCGTT+TGG | - | 51443:52229-52248 | MS.gene020400:CDS | 45.0% | |
| TAAAGTTCCCCCAAATTGGG+GGG | + | 51443:52083-52102 | None:intergenic | 45.0% | |
| TAGAACCCACACAATGTGGT+GGG | + | 51443:53588-53607 | None:intergenic | 45.0% | |
| TATGTCCCACCACATTGTGT+GGG | - | 51443:53580-53599 | MS.gene020400:intron | 45.0% | |
| TCTGTGAGTCAACTGGGTTA+AGG | + | 51443:52693-52712 | None:intergenic | 45.0% | |
| TGGAGAGGTAAACCCTTGTT+TGG | + | 51443:52167-52186 | None:intergenic | 45.0% | |
| TGTTTAACCCCCCAATTTGG+GGG | - | 51443:52073-52092 | MS.gene020400:intron | 45.0% | |
| TTAACTCCCAAACAAGGGGA+AGG | + | 51443:51894-51913 | None:intergenic | 45.0% | |
| ! | CAGCTATTTGAGACGTGGAT+TGG | - | 51443:54150-54169 | MS.gene020400:intron | 45.0% |
| ! | CTCATTGAGGCTTTTGTGCT+TGG | + | 51443:53744-53763 | None:intergenic | 45.0% |
| ! | GCTATTTGAGACGTGGATTG+GGG | - | 51443:54152-54171 | MS.gene020400:intron | 45.0% |
| ! | GGAGAGGTAAACCCTTGTTT+GGG | + | 51443:52166-52185 | None:intergenic | 45.0% |
| ! | TTCTGCAGCTATTTGAGACG+TGG | - | 51443:54145-54164 | MS.gene020400:intron | 45.0% |
| !! | CTTAGGCTTTGTTTGCGAGT+TGG | + | 51443:52225-52244 | None:intergenic | 45.0% |
| !!! | AAGGTTTTGGGGGGTTTTGA+AGG | + | 51443:52124-52143 | None:intergenic | 45.0% |
| !!! | AGGTTTTGGGGGGTTTTGAA+GGG | + | 51443:52123-52142 | None:intergenic | 45.0% |
| !!! | GGCTTTGTTTGCGAGTTTTG+AGG | - | 51443:51802-51821 | MS.gene020400:intron | 45.0% |
| !!! | TTTGCGAGTTGGGTTTTGGA+GGG | + | 51443:52214-52233 | None:intergenic | 45.0% |
| AGGGATTTGGGCCACATGAT+GGG | - | 51443:51674-51693 | MS.gene020400:intron | 50.0% | |
| CAACAGACTCGGAGAAAGAG+AGG | + | 51443:53972-53991 | None:intergenic | 50.0% | |
| CACTGACACGAGATCCCTTT+GGG | + | 51443:52401-52420 | None:intergenic | 50.0% | |
| CATCTACGCAGCAACAGACT+CGG | + | 51443:53983-54002 | None:intergenic | 50.0% | |
| CATTTCTCTTGTGGCAGGCT+GGG | - | 51443:52902-52921 | MS.gene020400:intron | 50.0% | |
| CCAACAAGGAAAGGAGATGG+AGG | - | 51443:51919-51938 | MS.gene020400:CDS | 50.0% | |
| CCTCCATCTCCTTTCCTTGT+TGG | + | 51443:51922-51941 | None:intergenic | 50.0% | |
| CGATCCGCTATTGACAACAC+TGG | - | 51443:53921-53940 | MS.gene020400:intron | 50.0% | |
| CTATCCCCAGCTACCATGAA+CGG | + | 51443:51565-51584 | None:intergenic | 50.0% | |
| GACGGAGTTCTTGTCTGTGT+AGG | - | 51443:51147-51166 | MS.gene020400:intron | 50.0% | |
| GAGCTCAAAACCGACCACTT+TGG | + | 51443:54188-54207 | None:intergenic | 50.0% | |
| GCTCTTCACATCCTTGGTGA+TGG | - | 51443:54204-54223 | MS.gene020400:CDS | 50.0% | |
| GTATGTCCCACCACATTGTG+TGG | - | 51443:53579-53598 | MS.gene020400:intron | 50.0% | |
| GTCTACTTCCTCCCATCATG+TGG | + | 51443:51688-51707 | None:intergenic | 50.0% | |
| TAGCACGGGTAGAGATACTG+CGG | + | 51443:51723-51742 | None:intergenic | 50.0% | |
| TAGGGATTTGGGCCACATGA+TGG | - | 51443:51673-51692 | MS.gene020400:intron | 50.0% | |
| TCACTGACACGAGATCCCTT+TGG | + | 51443:52402-52421 | None:intergenic | 50.0% | |
| TCATTTCTCTTGTGGCAGGC+TGG | - | 51443:52901-52920 | MS.gene020400:intron | 50.0% | |
| TGGCATCTTCCCAAAGTGGT+CGG | - | 51443:54175-54194 | MS.gene020400:intron | 50.0% | |
| TTCATGGTAGCTGGGGATAG+AGG | - | 51443:51565-51584 | MS.gene020400:CDS | 50.0% | |
| TTGAGTGCCAAGAGAGCAGA+TGG | - | 51443:51444-51463 | MS.gene020400:intron | 50.0% | |
| ! | CTGGACTGGGATCTTTGATG+TGG | - | 51443:53330-53349 | MS.gene020400:intron | 50.0% |
| ! | GCATAGGTTGGCTCCTCTTT+GGG | - | 51443:52944-52963 | MS.gene020400:intron | 50.0% |
| ! | GGAAAGCCTTCCCCTTGTTT+GGG | - | 51443:51885-51904 | MS.gene020400:CDS | 50.0% |
| ! | GTACATTTTGCAGGGCCTAG+AGG | - | 51443:52998-53017 | MS.gene020400:intron | 50.0% |
| ! | TGCATAGGTTGGCTCCTCTT+TGG | - | 51443:52943-52962 | MS.gene020400:intron | 50.0% |
| ! | TTCCTTCCATTCTGGAGGGA+CGG | - | 51443:51129-51148 | MS.gene020400:intron | 50.0% |
| !! | ATTTGAGACGTGGATTGGGG+TGG | - | 51443:54155-54174 | MS.gene020400:intron | 50.0% |
| !! | GGTGTCATTTCTCTTGTGGC+AGG | - | 51443:52897-52916 | MS.gene020400:intron | 50.0% |
| !! | GTGTTGTCAATAGCGGATCG+CGG | + | 51443:53921-53940 | None:intergenic | 50.0% |
| !! | GTTTGCGAGTTGGGTTTTGG+AGG | + | 51443:52215-52234 | None:intergenic | 50.0% |
| !! | GTTTTGAGCATATCCCTCGC+TGG | - | 51443:53311-53330 | MS.gene020400:intron | 50.0% |
| !!! | AGTTGGGTTTTGGAGGGGAA+GGG | + | 51443:52208-52227 | None:intergenic | 50.0% |
| !!! | GTTTGCGAGTTTTGAGGGGA+GGG | - | 51443:51808-51827 | MS.gene020400:intron | 50.0% |
| !!! | TGTTTGCGAGTTTTGAGGGG+AGG | - | 51443:51807-51826 | MS.gene020400:intron | 50.0% |
| !!! | TTGCGAGTTGGGTTTTGGAG+GGG | + | 51443:52213-52232 | None:intergenic | 50.0% |
| !!! | TTTGCGAGTTTTGAGGGGAG+GGG | - | 51443:51809-51828 | MS.gene020400:intron | 50.0% |
| AAGGGAAGGGAAGGAAGGGA+AGG | - | 51443:51852-51871 | MS.gene020400:intron | 55.0% | |
| AGAACTCCGTCCCTCCAGAA+TGG | + | 51443:51138-51157 | None:intergenic | 55.0% | |
| AGCATATCCCTCGCTGGACT+GGG | - | 51443:53317-53336 | MS.gene020400:intron | 55.0% | |
| AGGAAAGGCTTAGGAGGGGA+AGG | - | 51443:51833-51852 | MS.gene020400:intron | 55.0% | |
| AGGAAGGGAAGGGAGAAAGG+AGG | - | 51443:51863-51882 | MS.gene020400:CDS | 55.0% | |
| AGGGAAGGGAAGGAAGGGAA+GGG | - | 51443:51853-51872 | MS.gene020400:intron | 55.0% | |
| AGGGGAAGGAAAGGCTTAGG+AGG | - | 51443:51827-51846 | MS.gene020400:intron | 55.0% | |
| CAAAGATCCCAGTCCAGCGA+GGG | + | 51443:53327-53346 | None:intergenic | 55.0% | |
| GAAACACCAGAGGCCGATCA+AGG | + | 51443:52843-52862 | None:intergenic | 55.0% | |
| GGAAAGGCTTAGGAGGGGAA+GGG | - | 51443:51834-51853 | MS.gene020400:intron | 55.0% | |
| GGAAGGAAGGGAAGGGAGAA+AGG | - | 51443:51860-51879 | MS.gene020400:intron | 55.0% | |
| GGAAGGGAAGGGAGAAAGGA+GGG | - | 51443:51864-51883 | MS.gene020400:CDS | 55.0% | |
| GGGAAAGCCTTCCCCTTGTT+TGG | - | 51443:51884-51903 | MS.gene020400:CDS | 55.0% | |
| GGGAAGGAAAGGCTTAGGAG+GGG | - | 51443:51829-51848 | MS.gene020400:intron | 55.0% | |
| GGGGAAGGAAAGGCTTAGGA+GGG | - | 51443:51828-51847 | MS.gene020400:intron | 55.0% | |
| TAGCTGGGGATAGAGGAGTG+AGG | - | 51443:51572-51591 | MS.gene020400:intron | 55.0% | |
| TCAAAGATCCCAGTCCAGCG+AGG | + | 51443:53328-53347 | None:intergenic | 55.0% | |
| TGGGGATAGAGGAGTGAGGA+AGG | - | 51443:51576-51595 | MS.gene020400:intron | 55.0% | |
| TTTGAGGGGAGGGGAAGGAA+AGG | - | 51443:51818-51837 | MS.gene020400:intron | 55.0% | |
| ! | AGGTGTGGCGGAGTAGTAGA+CGG | + | 51443:50675-50694 | None:intergenic | 55.0% |
| ! | AGGTTGGCTCCTCTTTGGGT+GGG | - | 51443:52948-52967 | MS.gene020400:intron | 55.0% |
| ! | GATTTGGGCCACATGATGGG+AGG | - | 51443:51677-51696 | MS.gene020400:intron | 55.0% |
| ! | TAGGTTGGCTCCTCTTTGGG+TGG | - | 51443:52947-52966 | MS.gene020400:intron | 55.0% |
| !!! | GAGTTGGGTTTTGGAGGGGA+AGG | + | 51443:52209-52228 | None:intergenic | 55.0% |
| AGGCTTAGGAGGGGAAGGGA+AGG | - | 51443:51838-51857 | MS.gene020400:intron | 60.0% | |
| AGGGGAAGGGAAGGGAAGGA+AGG | - | 51443:51847-51866 | MS.gene020400:intron | 60.0% | |
| CACCAGAGGCCGATCAAGGA+AGG | + | 51443:52839-52858 | None:intergenic | 60.0% | |
| CCTCTAGCACCCACCCAAAG+AGG | + | 51443:52960-52979 | None:intergenic | 60.0% | |
| CCTCTTTGGGTGGGTGCTAG+AGG | - | 51443:52957-52976 | MS.gene020400:intron | 60.0% | |
| CGGAGTAGTAGACGGCGTGA+GGG | + | 51443:50667-50686 | None:intergenic | 60.0% | |
| CTCCGTCCCTCCAGAATGGA+AGG | + | 51443:51134-51153 | None:intergenic | 60.0% | |
| CTCCTTCCTTGATCGGCCTC+TGG | - | 51443:52834-52853 | MS.gene020400:intron | 60.0% | |
| GAGCATATCCCTCGCTGGAC+TGG | - | 51443:53316-53335 | MS.gene020400:intron | 60.0% | |
| GGAAGGGAGGGCTTATGGAG+AGG | + | 51443:52182-52201 | None:intergenic | 60.0% | |
| GGCTTAGGAGGGGAAGGGAA+GGG | - | 51443:51839-51858 | MS.gene020400:intron | 60.0% | |
| GGGAGGGGAAGGAAAGGCTT+AGG | - | 51443:51824-51843 | MS.gene020400:intron | 60.0% | |
| GGGGAAGGGAAGGGAAGGAA+GGG | - | 51443:51848-51867 | MS.gene020400:intron | 60.0% | |
| GGGGTGGCATCTTCCCAAAG+TGG | - | 51443:54171-54190 | MS.gene020400:intron | 60.0% | |
| TAGGAGGGGAAGGGAAGGGA+AGG | - | 51443:51843-51862 | MS.gene020400:intron | 60.0% | |
| !!! | CGAGTTTTGAGGGGAGGGGA+AGG | - | 51443:51813-51832 | MS.gene020400:intron | 60.0% |
| !!! | GGGTTTTGGAGGGGAAGGGA+GGG | + | 51443:52204-52223 | None:intergenic | 60.0% |
| !!! | GGTTTTGGAGGGGAAGGGAG+GGG | + | 51443:52203-52222 | None:intergenic | 60.0% |
| !!! | TGGGTTTTGGAGGGGAAGGG+AGG | + | 51443:52205-52224 | None:intergenic | 60.0% |
| GCGGAGTAGTAGACGGCGTG+AGG | + | 51443:50668-50687 | None:intergenic | 65.0% | |
| GGAGGGGAAGGGAGGGCTTA+TGG | + | 51443:52187-52206 | None:intergenic | 65.0% | |
| TGGAGGGGAAGGGAGGGGAA+GGG | + | 51443:52198-52217 | None:intergenic | 65.0% | |
| TTGGAGGGGAAGGGAGGGGA+AGG | + | 51443:52199-52218 | None:intergenic | 65.0% | |
| AGGGGAAGGGAGGGGAAGGG+AGG | + | 51443:52195-52214 | None:intergenic | 70.0% | |
| GGGGAAGGGAGGGGAAGGGA+GGG | + | 51443:52194-52213 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51443 | gene | 50620 | 54276 | 50620 | ID=MS.gene020400 |
| 51443 | mRNA | 50620 | 54276 | 50620 | ID=MS.gene020400.t1;Parent=MS.gene020400 |
| 51443 | exon | 54200 | 54276 | 54200 | ID=MS.gene020400.t1.exon1;Parent=MS.gene020400.t1 |
| 51443 | CDS | 54200 | 54276 | 54200 | ID=cds.MS.gene020400.t1;Parent=MS.gene020400.t1 |
| 51443 | exon | 54021 | 54090 | 54021 | ID=MS.gene020400.t1.exon2;Parent=MS.gene020400.t1 |
| 51443 | CDS | 54021 | 54090 | 54021 | ID=cds.MS.gene020400.t1;Parent=MS.gene020400.t1 |
| 51443 | exon | 53854 | 53913 | 53854 | ID=MS.gene020400.t1.exon3;Parent=MS.gene020400.t1 |
| 51443 | CDS | 53854 | 53913 | 53854 | ID=cds.MS.gene020400.t1;Parent=MS.gene020400.t1 |
| 51443 | exon | 52144 | 52258 | 52144 | ID=MS.gene020400.t1.exon4;Parent=MS.gene020400.t1 |
| 51443 | CDS | 52144 | 52258 | 52144 | ID=cds.MS.gene020400.t1;Parent=MS.gene020400.t1 |
| 51443 | exon | 51862 | 51977 | 51862 | ID=MS.gene020400.t1.exon5;Parent=MS.gene020400.t1 |
| 51443 | CDS | 51862 | 51977 | 51862 | ID=cds.MS.gene020400.t1;Parent=MS.gene020400.t1 |
| 51443 | exon | 51461 | 51585 | 51461 | ID=MS.gene020400.t1.exon6;Parent=MS.gene020400.t1 |
| 51443 | CDS | 51461 | 51585 | 51461 | ID=cds.MS.gene020400.t1;Parent=MS.gene020400.t1 |
| 51443 | exon | 50620 | 50743 | 50620 | ID=MS.gene020400.t1.exon7;Parent=MS.gene020400.t1 |
| 51443 | CDS | 50620 | 50743 | 50620 | ID=cds.MS.gene020400.t1;Parent=MS.gene020400.t1 |
| Gene Sequence |
| Protein sequence |
