Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058354.t1 | P46287.1 | 100 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 5.30E-97 | 363.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058354.t1 | P46287 | 100.0 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 1.3e-99 | 363.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058354.t1 | A0A0S3SAC0 | 99.4 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 8.5e-97 | 362.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051330 | MS.gene058354 | 0.816836 | 4.50E-52 | -1.69E-46 |
| MS.gene054937 | MS.gene058354 | 0.806995 | 6.28E-50 | -1.69E-46 |
| MS.gene056075 | MS.gene058354 | 0.818759 | 1.66E-52 | -1.69E-46 |
| MS.gene056917 | MS.gene058354 | 0.816246 | 6.10E-52 | -1.69E-46 |
| MS.gene058354 | MS.gene06001 | 0.809434 | 1.90E-50 | -1.69E-46 |
| MS.gene058354 | MS.gene065715 | 0.871384 | 7.12E-67 | -1.69E-46 |
| MS.gene058354 | MS.gene065998 | 0.821002 | 5.09E-53 | -1.69E-46 |
| MS.gene058354 | MS.gene066455 | 0.819849 | 9.36E-53 | -1.69E-46 |
| MS.gene058354 | MS.gene069310 | 0.808823 | 2.56E-50 | -1.69E-46 |
| MS.gene058354 | MS.gene070600 | 0.836002 | 1.21E-56 | -1.69E-46 |
| MS.gene058354 | MS.gene070601 | 0.824216 | 9.10E-54 | -1.69E-46 |
| MS.gene058354 | MS.gene071364 | 0.823286 | 1.50E-53 | -1.69E-46 |
| MS.gene058354 | MS.gene071366 | 0.806808 | 6.87E-50 | -1.69E-46 |
| MS.gene058354 | MS.gene073078 | 0.814978 | 1.17E-51 | -1.69E-46 |
| MS.gene058354 | MS.gene07808 | 0.805977 | 1.03E-49 | -1.69E-46 |
| MS.gene058354 | MS.gene21581 | 0.830673 | 2.57E-55 | -1.69E-46 |
| MS.gene058354 | MS.gene30904 | 0.804246 | 2.37E-49 | -1.69E-46 |
| MS.gene058354 | MS.gene31177 | 0.814594 | 1.42E-51 | -1.69E-46 |
| MS.gene058354 | MS.gene31405 | 0.842851 | 2.01E-58 | -1.69E-46 |
| MS.gene058354 | MS.gene35379 | 0.858742 | 6.69E-63 | -1.69E-46 |
| MS.gene058354 | MS.gene42247 | 0.82219 | 2.70E-53 | -1.69E-46 |
| MS.gene058354 | MS.gene45470 | 0.81408 | 1.85E-51 | -1.69E-46 |
| MS.gene058354 | MS.gene47819 | 0.805705 | 1.17E-49 | -1.69E-46 |
| MS.gene058354 | MS.gene50252 | 0.82068 | 6.04E-53 | -1.69E-46 |
| MS.gene058354 | MS.gene55732 | 0.815711 | 8.04E-52 | -1.69E-46 |
| MS.gene058354 | MS.gene56166 | 0.835354 | 1.76E-56 | -1.69E-46 |
| MS.gene058354 | MS.gene56189 | 0.884699 | 1.53E-71 | -1.69E-46 |
| MS.gene058354 | MS.gene57391 | 0.805625 | 1.22E-49 | -1.69E-46 |
| MS.gene058354 | MS.gene57462 | 0.822216 | 2.67E-53 | -1.69E-46 |
| MS.gene058354 | MS.gene58215 | 0.827541 | 1.48E-54 | -1.69E-46 |
| MS.gene058354 | MS.gene58448 | 0.823672 | 1.22E-53 | -1.69E-46 |
| MS.gene058354 | MS.gene58693 | 0.819001 | 1.46E-52 | -1.69E-46 |
| MS.gene058354 | MS.gene58776 | 0.829755 | 4.31E-55 | -1.69E-46 |
| MS.gene058354 | MS.gene70215 | 0.807073 | 6.04E-50 | -1.69E-46 |
| MS.gene058354 | MS.gene75171 | 0.819658 | 1.03E-52 | -1.69E-46 |
| MS.gene058354 | MS.gene77160 | 0.875656 | 2.59E-68 | -1.69E-46 |
| MS.gene058354 | MS.gene77163 | 0.861843 | 7.72E-64 | -1.69E-46 |
| MS.gene058354 | MS.gene77282 | 0.821278 | 4.40E-53 | -1.69E-46 |
| MS.gene058354 | MS.gene78764 | 0.804993 | 1.65E-49 | -1.69E-46 |
| MS.gene058354 | MS.gene81493 | 0.827429 | 1.57E-54 | -1.69E-46 |
| MS.gene058354 | MS.gene83961 | 0.814621 | 1.40E-51 | -1.69E-46 |
| MS.gene058354 | MS.gene84316 | 0.810748 | 9.88E-51 | -1.69E-46 |
| MS.gene058354 | MS.gene85108 | 0.842145 | 3.09E-58 | -1.69E-46 |
| MS.gene058354 | MS.gene85110 | 0.813289 | 2.76E-51 | -1.69E-46 |
| MS.gene058354 | MS.gene88892 | 0.810682 | 1.02E-50 | -1.69E-46 |
| MS.gene058354 | MS.gene91408 | 0.810871 | 9.29E-51 | -1.69E-46 |
| MS.gene058354 | MS.gene91826 | 0.825627 | 4.23E-54 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058354.t1 | MTR_8g046140 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 6.61e-133 | 369 |
| MS.gene058354.t1 | MTR_3g007700 | 100.000 | 179 | 0 | 0 | 3 | 181 | 4 | 182 | 1.92e-132 | 368 |
| MS.gene058354.t1 | MTR_4g080740 | 97.790 | 181 | 4 | 0 | 1 | 181 | 1 | 181 | 6.00e-132 | 367 |
| MS.gene058354.t1 | MTR_3g007690 | 80.663 | 181 | 33 | 2 | 2 | 180 | 61 | 241 | 9.44e-102 | 293 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058354.t1 | AT2G42740 | 96.133 | 181 | 7 | 0 | 1 | 181 | 1 | 181 | 1.79e-129 | 361 |
| MS.gene058354.t1 | AT5G45775 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 9.20e-129 | 359 |
| MS.gene058354.t1 | AT4G18730 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 9.20e-129 | 359 |
| MS.gene058354.t1 | AT3G58700 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 9.20e-129 | 359 |
| MS.gene058354.t1 | AT5G45775 | 95.322 | 171 | 8 | 0 | 11 | 181 | 1 | 171 | 1.13e-120 | 338 |
Find 51 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCTTCCACTGGTATTTA+TGG | 0.136205 | 3.2:-2296179 | MS.gene058354:CDS |
| CAATTGCCTGGGACTTGTTT+AGG | 0.246867 | 3.2:+2296015 | None:intergenic |
| CGACAAGGCAATGCAGCTTT+TGG | 0.255810 | 3.2:-2296592 | MS.gene058354:CDS |
| TTCAGTGATACCGGATGTTT+TGG | 0.275627 | 3.2:-2296525 | MS.gene058354:CDS |
| TATCCAGGAACATATTGATT+TGG | 0.290604 | 3.2:-2296496 | MS.gene058354:CDS |
| TGCACTTTGATTTCCCTCAT+TGG | 0.303574 | 3.2:+2297535 | None:intergenic |
| GCATGCTACGTCACTGTTAG+AGG | 0.353505 | 3.2:-2296615 | MS.gene058354:CDS |
| ATCCAGGAACATATTGATTT+GGG | 0.366765 | 3.2:-2296495 | MS.gene058354:CDS |
| TATGGATTTCTTTGTTGTCT+TGG | 0.372237 | 3.2:-2296156 | MS.gene058354:CDS |
| TTTAACTTGGAACCACTTCA+TGG | 0.385179 | 3.2:+2296052 | None:intergenic |
| TTCCCAAATCAATATGTTCC+TGG | 0.396627 | 3.2:+2296493 | None:intergenic |
| TCCGTTCCTTTGGTATTAGA+AGG | 0.399311 | 3.2:-2296650 | MS.gene058354:CDS |
| AGAAAATACCTTAGCGGCTC+TGG | 0.400111 | 3.2:+2297465 | None:intergenic |
| TTCCACTGGTATTTATGGTA+TGG | 0.405174 | 3.2:-2296174 | MS.gene058354:CDS |
| AAAATACCTTTGGAGAAAAC+AGG | 0.431508 | 3.2:+2297339 | None:intergenic |
| AGGTACACGGTCCGTTCCTT+TGG | 0.433646 | 3.2:-2296660 | MS.gene058354:CDS |
| GATCTCACTAAACAATTGCC+TGG | 0.468826 | 3.2:+2296003 | None:intergenic |
| TCACACCTTCATATTTAACT+TGG | 0.469248 | 3.2:+2296039 | None:intergenic |
| TTTGTTGTCTTGGAGCGCCC+TGG | 0.474962 | 3.2:-2296146 | MS.gene058354:CDS |
| AACATCTCCGTCGGTGAAAG+TGG | 0.484770 | 3.2:-2297499 | MS.gene058354:CDS |
| CGACGTCCCACACGATAACC+AGG | 0.485872 | 3.2:+2296128 | None:intergenic |
| CATCCTTTGTGACACGATGT+TGG | 0.510267 | 3.2:+2296078 | None:intergenic |
| AGGAGAAACTTCAGTGATAC+CGG | 0.515104 | 3.2:-2296534 | MS.gene058354:CDS |
| TTCATTCCTTCTAATACCAA+AGG | 0.519643 | 3.2:+2296644 | None:intergenic |
| CGTAGGTGCAAGGCAAGAGT+TGG | 0.526727 | 3.2:-2296104 | MS.gene058354:CDS |
| TCGTCTCACCAGAGCCGCTA+AGG | 0.538952 | 3.2:-2297473 | MS.gene058354:intron |
| GGAGAGCGGTTTGAAGGTCA+AGG | 0.545050 | 3.2:-2296571 | MS.gene058354:CDS |
| ATACTGAGAAAATACCTTAG+CGG | 0.552318 | 3.2:+2297459 | None:intergenic |
| GAGCGCCCTGGTTATCGTGT+GGG | 0.552380 | 3.2:-2296134 | MS.gene058354:CDS |
| TTCAGGTATGATCCTTCCAC+TGG | 0.557425 | 3.2:-2296188 | MS.gene058354:intron |
| GATACCGAAGCCAAAACATC+CGG | 0.566708 | 3.2:+2296515 | None:intergenic |
| TGGTTCCAAGTTAAATATGA+AGG | 0.567557 | 3.2:-2296044 | MS.gene058354:CDS |
| TCAAGGAATATGAGCTGTTG+AGG | 0.569136 | 3.2:-2296554 | MS.gene058354:CDS |
| GGAGCGCCCTGGTTATCGTG+TGG | 0.572642 | 3.2:-2296135 | MS.gene058354:CDS |
| ATCTCACTAAACAATTGCCT+GGG | 0.574406 | 3.2:+2296004 | None:intergenic |
| TAGGTTCTTGAACAGCTAAG+TGG | 0.586306 | 3.2:-2297369 | MS.gene058354:CDS |
| TGTGATCCTAAACAAGTCCC+AGG | 0.593737 | 3.2:-2296021 | MS.gene058354:CDS |
| GGGACGTCGTCGTAGGTGCA+AGG | 0.607035 | 3.2:-2296114 | MS.gene058354:CDS |
| GAAACTGTCTAATCCAATGA+GGG | 0.609459 | 3.2:-2297548 | MS.gene058354:CDS |
| ATCGTGTGGGACGTCGTCGT+AGG | 0.611248 | 3.2:-2296121 | MS.gene058354:CDS |
| TCCTTCTAATACCAAAGGAA+CGG | 0.611594 | 3.2:+2296649 | None:intergenic |
| CAAAGGATGATGCCATGAAG+TGG | 0.613790 | 3.2:-2296064 | MS.gene058354:CDS |
| ATCCATACCATAAATACCAG+TGG | 0.620651 | 3.2:+2296172 | None:intergenic |
| CTTATTGACAGCTAGGTACA+CGG | 0.623398 | 3.2:-2296673 | MS.gene058354:intron |
| CTTGTACTCAACATCTCCGT+CGG | 0.623554 | 3.2:-2297508 | MS.gene058354:CDS |
| CGTCACTGTTAGAGGCGACA+AGG | 0.626392 | 3.2:-2296607 | MS.gene058354:CDS |
| AGAAACTGTCTAATCCAATG+AGG | 0.629710 | 3.2:-2297549 | MS.gene058354:CDS |
| ATACCATAAATACCAGTGGA+AGG | 0.634245 | 3.2:+2296176 | None:intergenic |
| ACGATCTCCACTTTCACCGA+CGG | 0.653039 | 3.2:+2297492 | None:intergenic |
| AATCCAACATCGTGTCACAA+AGG | 0.664970 | 3.2:-2296081 | MS.gene058354:CDS |
| GACGTCCCACACGATAACCA+GGG | 0.726452 | 3.2:+2296129 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATAAAAAATACCTT+TGG | + | chr3.2:2297252-2297271 | None:intergenic | 10.0% |
| !! | TTATTATTATTTGTCAATTT+CGG | + | chr3.2:2296993-2297012 | None:intergenic | 10.0% |
| !! | TTTATTTGAAGAAAAATATT+CGG | - | chr3.2:2298246-2298265 | MS.gene058354:intron | 10.0% |
| !!! | AATATTTTTCTTCAAATAAA+AGG | + | chr3.2:2298246-2298265 | None:intergenic | 10.0% |
| !!! | AGTATATTTTTTAATAGTTT+AGG | - | chr3.2:2296775-2296794 | MS.gene058354:intron | 10.0% |
| !!! | CAAATAACATTAATTTATTT+TGG | - | chr3.2:2297521-2297540 | MS.gene058354:CDS | 10.0% |
| !!! | GTATATTTTTTAATAGTTTA+GGG | - | chr3.2:2296776-2296795 | MS.gene058354:intron | 10.0% |
| !! | AAAAAAATATACAAAGCAAA+AGG | + | chr3.2:2298300-2298319 | None:intergenic | 15.0% |
| !! | TATAATATAATGATCAACAA+TGG | - | chr3.2:2296909-2296928 | MS.gene058354:intron | 15.0% |
| !! | TGACAAATAATAATAATGAT+AGG | - | chr3.2:2296997-2297016 | MS.gene058354:intron | 15.0% |
| !!! | AAAATATATGTACAAGTTTT+TGG | + | chr3.2:2297495-2297514 | None:intergenic | 15.0% |
| !!! | CATAATTTTAAACATCAATA+TGG | + | chr3.2:2298369-2298388 | None:intergenic | 15.0% |
| !! | AAACAAACTCTTATTATGTA+TGG | - | chr3.2:2296531-2296550 | MS.gene058354:CDS | 20.0% |
| !! | AAGAAAAAATTACTTCATAC+AGG | - | chr3.2:2297560-2297579 | MS.gene058354:CDS | 20.0% |
| !! | AAGATAATTCTTTGTTCATT+TGG | + | chr3.2:2296875-2296894 | None:intergenic | 20.0% |
| !! | ACTTAGAAATACATATTTCA+AGG | - | chr3.2:2297759-2297778 | MS.gene058354:intron | 20.0% |
| !! | ATGCAATTACATACATAAAT+TGG | + | chr3.2:2296137-2296156 | None:intergenic | 20.0% |
| !! | ATTACATACATAAATTGGAT+TGG | + | chr3.2:2296132-2296151 | None:intergenic | 20.0% |
| !! | TAGTTTATAGACTAAATTGA+TGG | - | chr3.2:2296820-2296839 | MS.gene058354:intron | 20.0% |
| !!! | ATGAAGTAATTTTTTCTTTC+CGG | + | chr3.2:2297558-2297577 | None:intergenic | 20.0% |
| !!! | ATGTAATTGCATCATTTTTT+AGG | - | chr3.2:2296145-2296164 | MS.gene058354:CDS | 20.0% |
| !!! | TCAATATTTGCTAGTTTTTT+AGG | - | chr3.2:2297463-2297482 | MS.gene058354:intron | 20.0% |
| !!! | TGTAATTGCATCATTTTTTA+GGG | - | chr3.2:2296146-2296165 | MS.gene058354:CDS | 20.0% |
| !!! | TTTGATTTTTTATGTCAATG+TGG | - | chr3.2:2298206-2298225 | MS.gene058354:intron | 20.0% |
| ! | AAACTAATGAAAACAGCTTA+TGG | + | chr3.2:2296456-2296475 | None:intergenic | 25.0% |
| ! | AAATCCATCAATTTAATCAC+TGG | + | chr3.2:2296734-2296753 | None:intergenic | 25.0% |
| ! | AATACCAGTGATTAAATTGA+TGG | - | chr3.2:2296727-2296746 | MS.gene058354:intron | 25.0% |
| ! | AGGTTAGTAATGAAATTGAA+AGG | + | chr3.2:2297174-2297193 | None:intergenic | 25.0% |
| ! | ATACTAATGTTGTCAAAAAG+TGG | - | chr3.2:2297630-2297649 | MS.gene058354:intron | 25.0% |
| ! | TAGTAATGAAATTGAAAGGA+AGG | + | chr3.2:2297170-2297189 | None:intergenic | 25.0% |
| !! | ATATGTATTTCTAAGTGCAA+CGG | + | chr3.2:2297755-2297774 | None:intergenic | 25.0% |
| !! | GATGTTTAAAATTATGCTTC+AGG | - | chr3.2:2298373-2298392 | MS.gene058354:intron | 25.0% |
| !! | TTAAAGTGTTTATCCAAACA+TGG | + | chr3.2:2296308-2296327 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCTTATGTTTCAA+AGG | - | chr3.2:2298329-2298348 | MS.gene058354:intron | 25.0% |
| !!! | TATTTGAAGCAACATGATTT+TGG | - | chr3.2:2296218-2296237 | MS.gene058354:intron | 25.0% |
| !!! | TGAAGTAATTTTTTCTTTCC+GGG | + | chr3.2:2297557-2297576 | None:intergenic | 25.0% |
| !!! | TGATGGATTTCATATAGTTT+GGG | - | chr3.2:2296744-2296763 | MS.gene058354:intron | 25.0% |
| !!! | TTGATGGATTTCATATAGTT+TGG | - | chr3.2:2296743-2296762 | MS.gene058354:intron | 25.0% |
| AATGCACAAGTCAATTCTAT+GGG | + | chr3.2:2296939-2296958 | None:intergenic | 30.0% | |
| ATACTGAGAAAATACCTTAG+CGG | + | chr3.2:2297122-2297141 | None:intergenic | 30.0% | |
| GACTTATTGAGTTTAACTAC+TGG | + | chr3.2:2296506-2296525 | None:intergenic | 30.0% | |
| GAGTCAAATTCTCATCATTT+AGG | - | chr3.2:2297786-2297805 | MS.gene058354:intron | 30.0% | |
| TAGAAAATGAAGAACCAATC+AGG | + | chr3.2:2297880-2297899 | None:intergenic | 30.0% | |
| TCACACCTTCATATTTAACT+TGG | + | chr3.2:2298542-2298561 | None:intergenic | 30.0% | |
| TGGTTCCAAGTTAAATATGA+AGG | - | chr3.2:2298534-2298553 | MS.gene058354:intron | 30.0% | |
| TTCATTCCTTCTAATACCAA+AGG | + | chr3.2:2297937-2297956 | None:intergenic | 30.0% | |
| ! | AAAATACCTTTGGAGAAAAC+AGG | + | chr3.2:2297242-2297261 | None:intergenic | 30.0% |
| ! | AATCACTGGTATTGAGATAT+TGG | + | chr3.2:2296720-2296739 | None:intergenic | 30.0% |
| ! | ATCACTGGTATTGAGATATT+GGG | + | chr3.2:2296719-2296738 | None:intergenic | 30.0% |
| ! | GATGGATTTCATATAGTTTG+GGG | - | chr3.2:2296745-2296764 | MS.gene058354:intron | 30.0% |
| ! | GTGTCTTAAAATAGGGTTTT+TGG | - | chr3.2:2297701-2297720 | MS.gene058354:intron | 30.0% |
| ! | TATCCAGGAACATATTGATT+TGG | - | chr3.2:2298082-2298101 | MS.gene058354:intron | 30.0% |
| ! | TATGGATTTCTTTGTTGTCT+TGG | - | chr3.2:2298422-2298441 | MS.gene058354:intron | 30.0% |
| !! | ATCCAGGAACATATTGATTT+GGG | - | chr3.2:2298083-2298102 | MS.gene058354:intron | 30.0% |
| !! | ATGAATTTTTGTTTCCTTCC+GGG | + | chr3.2:2296686-2296705 | None:intergenic | 30.0% |
| !! | GATGAATTTTTGTTTCCTTC+CGG | + | chr3.2:2296687-2296706 | None:intergenic | 30.0% |
| !!! | TATTTTGGTTGACAAATTCC+CGG | - | chr3.2:2297536-2297555 | MS.gene058354:CDS | 30.0% |
| ACAGTTCTTTACATGCGTAT+TGG | - | chr3.2:2297832-2297851 | MS.gene058354:intron | 35.0% | |
| ACATGCGTATTGGATATCTT+GGG | - | chr3.2:2297842-2297861 | MS.gene058354:intron | 35.0% | |
| ACCTATGAGAAAGAGAAAAC+AGG | + | chr3.2:2297194-2297213 | None:intergenic | 35.0% | |
| AGAAACTGTCTAATCCAATG+AGG | - | chr3.2:2297029-2297048 | MS.gene058354:intron | 35.0% | |
| ATACCATAAATACCAGTGGA+AGG | + | chr3.2:2298405-2298424 | None:intergenic | 35.0% | |
| ATCCATACCATAAATACCAG+TGG | + | chr3.2:2298409-2298428 | None:intergenic | 35.0% | |
| ATGTACAGAACATGTCTACT+AGG | + | chr3.2:2297360-2297379 | None:intergenic | 35.0% | |
| CAATGCACAAGTCAATTCTA+TGG | + | chr3.2:2296940-2296959 | None:intergenic | 35.0% | |
| GAAACTGTCTAATCCAATGA+GGG | - | chr3.2:2297030-2297049 | MS.gene058354:intron | 35.0% | |
| TACATGCGTATTGGATATCT+TGG | - | chr3.2:2297841-2297860 | MS.gene058354:intron | 35.0% | |
| TATTGTGCTTATTGACAGCT+AGG | - | chr3.2:2297898-2297917 | MS.gene058354:intron | 35.0% | |
| TCCTTCTAATACCAAAGGAA+CGG | + | chr3.2:2297932-2297951 | None:intergenic | 35.0% | |
| TGCCATGGTGTCTTAAAATA+GGG | - | chr3.2:2297694-2297713 | MS.gene058354:intron | 35.0% | |
| TTAGGGACTAAATAGATGAG+AGG | - | chr3.2:2296793-2296812 | MS.gene058354:intron | 35.0% | |
| TTCCACTGGTATTTATGGTA+TGG | - | chr3.2:2298404-2298423 | MS.gene058354:intron | 35.0% | |
| TTCCCAAATCAATATGTTCC+TGG | + | chr3.2:2298088-2298107 | None:intergenic | 35.0% | |
| ! | ACCTGTTTTCTCTTTCTCAT+AGG | - | chr3.2:2297190-2297209 | MS.gene058354:intron | 35.0% |
| ! | TCACTGGTATTGAGATATTG+GGG | + | chr3.2:2296718-2296737 | None:intergenic | 35.0% |
| !! | AATTGACTTGTGCATTGCAT+TGG | - | chr3.2:2296943-2296962 | MS.gene058354:intron | 35.0% |
| !! | TCTCCACATTTTGATCTGTT+TGG | - | chr3.2:2296242-2296261 | MS.gene058354:intron | 35.0% |
| !! | TTTAACTTGGAACCACTTCA+TGG | + | chr3.2:2298529-2298548 | None:intergenic | 35.0% |
| !!! | AACCCTATTTTAAGACACCA+TGG | + | chr3.2:2297699-2297718 | None:intergenic | 35.0% |
| AAAGTGGCCATAGAAGATTG+CGG | - | chr3.2:2297646-2297665 | MS.gene058354:intron | 40.0% | |
| AATCCAACATCGTGTCACAA+AGG | - | chr3.2:2298497-2298516 | MS.gene058354:intron | 40.0% | |
| AGGAGAAACTTCAGTGATAC+CGG | - | chr3.2:2298044-2298063 | MS.gene058354:intron | 40.0% | |
| AGTAAACCATCATTCAGTCC+CGG | - | chr3.2:2296665-2296684 | MS.gene058354:CDS | 40.0% | |
| AGTAGCTAGCTAATCTGGTT+TGG | - | chr3.2:2296274-2296293 | MS.gene058354:intron | 40.0% | |
| CTGCCATGGTGTCTTAAAAT+AGG | - | chr3.2:2297693-2297712 | MS.gene058354:intron | 40.0% | |
| CTTATTGACAGCTAGGTACA+CGG | - | chr3.2:2297905-2297924 | MS.gene058354:intron | 40.0% | |
| GAGCCAAACAGATCAAAATG+TGG | + | chr3.2:2296248-2296267 | None:intergenic | 40.0% | |
| GATAGTAAACAAGCAGACGT+TGG | + | chr3.2:2296969-2296988 | None:intergenic | 40.0% | |
| GATCCTTCCACTGGTATTTA+TGG | - | chr3.2:2298399-2298418 | MS.gene058354:intron | 40.0% | |
| GGTTGTGTTTGTATCCTGAT+TGG | - | chr3.2:2297863-2297882 | MS.gene058354:intron | 40.0% | |
| TAGGTTCTTGAACAGCTAAG+TGG | - | chr3.2:2297209-2297228 | MS.gene058354:intron | 40.0% | |
| TCAAGGAATATGAGCTGTTG+AGG | - | chr3.2:2298024-2298043 | MS.gene058354:intron | 40.0% | |
| TCCGTTCCTTTGGTATTAGA+AGG | - | chr3.2:2297928-2297947 | MS.gene058354:intron | 40.0% | |
| TTTGGTATCTAGGCCATGTT+TGG | - | chr3.2:2296292-2296311 | MS.gene058354:intron | 40.0% | |
| ! | CAAACACCTGTTTTCTCCAA+AGG | - | chr3.2:2297233-2297252 | MS.gene058354:intron | 40.0% |
| ! | TCTAGAGTAGCTAGCTAATC+TGG | - | chr3.2:2296269-2296288 | MS.gene058354:intron | 40.0% |
| ! | TGCACTTTGATTTCCCTCAT+TGG | + | chr3.2:2297046-2297065 | None:intergenic | 40.0% |
| ! | TTCAGTGATACCGGATGTTT+TGG | - | chr3.2:2298053-2298072 | MS.gene058354:intron | 40.0% |
| !! | GCTAATCTGGTTTGGTATCT+AGG | - | chr3.2:2296282-2296301 | MS.gene058354:intron | 40.0% |
| !!! | GTGGAGTTTTTTATTGCCAC+CGG | - | chr3.2:2297668-2297687 | MS.gene058354:intron | 40.0% |
| AACTCCACCGCAATCTTCTA+TGG | + | chr3.2:2297656-2297675 | None:intergenic | 45.0% | |
| AGAAAATACCTTAGCGGCTC+TGG | + | chr3.2:2297116-2297135 | None:intergenic | 45.0% | |
| CAAAGGATGATGCCATGAAG+TGG | - | chr3.2:2298514-2298533 | MS.gene058354:intron | 45.0% | |
| CATCCTTTGTGACACGATGT+TGG | + | chr3.2:2298503-2298522 | None:intergenic | 45.0% | |
| CTTGTACTCAACATCTCCGT+CGG | - | chr3.2:2297070-2297089 | MS.gene058354:intron | 45.0% | |
| GATACCGAAGCCAAAACATC+CGG | + | chr3.2:2298066-2298085 | None:intergenic | 45.0% | |
| TGTGATCCTAAACAAGTCCC+AGG | - | chr3.2:2298557-2298576 | MS.gene058354:intron | 45.0% | |
| TTAAGACACCATGGCAGAAC+CGG | + | chr3.2:2297690-2297709 | None:intergenic | 45.0% | |
| TTCAGGTATGATCCTTCCAC+TGG | - | chr3.2:2298390-2298409 | MS.gene058354:intron | 45.0% | |
| ! | CAATTGCCTGGGACTTGTTT+AGG | + | chr3.2:2298566-2298585 | None:intergenic | 45.0% |
| !!! | ATGTTTTGGCTTCGGTATCC+AGG | - | chr3.2:2298067-2298086 | MS.gene058354:intron | 45.0% |
| !!! | GATACCGGATGTTTTGGCTT+CGG | - | chr3.2:2298059-2298078 | MS.gene058354:intron | 45.0% |
| !! | ATAAAAATTAAATAATAGAA+AGG | + | chr3.2:2297294-2297313 | None:intergenic | 5.0% |
| !!! | TTTATTATATTTTTTTTTTC+TGG | - | chr3.2:2297385-2297404 | MS.gene058354:intron | 5.0% |
| AACATCTCCGTCGGTGAAAG+TGG | - | chr3.2:2297079-2297098 | MS.gene058354:intron | 50.0% | |
| AACCATCATTCAGTCCCGGA+AGG | - | chr3.2:2296669-2296688 | MS.gene058354:intron | 50.0% | |
| ACGATCTCCACTTTCACCGA+CGG | + | chr3.2:2297089-2297108 | None:intergenic | 50.0% | |
| GCATGCTACGTCACTGTTAG+AGG | - | chr3.2:2297963-2297982 | MS.gene058354:intron | 50.0% | |
| TTCCTTCCGGGACTGAATGA+TGG | + | chr3.2:2296674-2296693 | None:intergenic | 50.0% | |
| ! | CGACAAGGCAATGCAGCTTT+TGG | - | chr3.2:2297986-2298005 | MS.gene058354:intron | 50.0% |
| !! | GCAATGCAGCTTTTGGAGAG+CGG | - | chr3.2:2297993-2298012 | MS.gene058354:intron | 50.0% |
| !! | GCTTTTGGAGAGCGGTTTGA+AGG | - | chr3.2:2298001-2298020 | MS.gene058354:intron | 50.0% |
| !! | GTGCAACGGATTGCAGAAGA+CGG | + | chr3.2:2297741-2297760 | None:intergenic | 50.0% |
| !! | TGCAACGGATTGCAGAAGAC+GGG | + | chr3.2:2297740-2297759 | None:intergenic | 50.0% |
| AGGTACACGGTCCGTTCCTT+TGG | - | chr3.2:2297918-2297937 | MS.gene058354:intron | 55.0% | |
| CGTAGGTGCAAGGCAAGAGT+TGG | - | chr3.2:2298474-2298493 | MS.gene058354:intron | 55.0% | |
| CGTCACTGTTAGAGGCGACA+AGG | - | chr3.2:2297971-2297990 | MS.gene058354:intron | 55.0% | |
| GACGTCCCACACGATAACCA+GGG | + | chr3.2:2298452-2298471 | None:intergenic | 55.0% | |
| GATTGCAGAAGACGGGCCAT+GGG | + | chr3.2:2297733-2297752 | None:intergenic | 55.0% | |
| GGAGAGCGGTTTGAAGGTCA+AGG | - | chr3.2:2298007-2298026 | MS.gene058354:intron | 55.0% | |
| GTGGCCATAGAAGATTGCGG+TGG | - | chr3.2:2297649-2297668 | MS.gene058354:intron | 55.0% | |
| ! | TTTGTTGTCTTGGAGCGCCC+TGG | - | chr3.2:2298432-2298451 | MS.gene058354:intron | 55.0% |
| !! | TATTGCCACCGGTTCTGCCA+TGG | - | chr3.2:2297679-2297698 | MS.gene058354:intron | 55.0% |
| !!! | GGGTTTTTGGCCTTTGCCCA+TGG | - | chr3.2:2297714-2297733 | MS.gene058354:intron | 55.0% |
| AGAAGACGGGCCATGGGCAA+AGG | + | chr3.2:2297727-2297746 | None:intergenic | 60.0% | |
| AGACACCATGGCAGAACCGG+TGG | + | chr3.2:2297687-2297706 | None:intergenic | 60.0% | |
| ATCGTGTGGGACGTCGTCGT+AGG | - | chr3.2:2298457-2298476 | MS.gene058354:intron | 60.0% | |
| CGACGTCCCACACGATAACC+AGG | + | chr3.2:2298453-2298472 | None:intergenic | 60.0% | |
| GAGCGCCCTGGTTATCGTGT+GGG | - | chr3.2:2298444-2298463 | MS.gene058354:intron | 60.0% | |
| GGATTGCAGAAGACGGGCCA+TGG | + | chr3.2:2297734-2297753 | None:intergenic | 60.0% | |
| TCGTCTCACCAGAGCCGCTA+AGG | - | chr3.2:2297105-2297124 | MS.gene058354:intron | 60.0% | |
| GGGACGTCGTCGTAGGTGCA+AGG | - | chr3.2:2298464-2298483 | MS.gene058354:intron | 65.0% | |
| ! | GGAGCGCCCTGGTTATCGTG+TGG | - | chr3.2:2298443-2298462 | MS.gene058354:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 2296010 | 2298590 | 2296010 | ID=MS.gene058354 |
| chr3.2 | mRNA | 2296010 | 2298590 | 2296010 | ID=MS.gene058354.t1;Parent=MS.gene058354 |
| chr3.2 | exon | 2298588 | 2298590 | 2298588 | ID=MS.gene058354.t1.exon1;Parent=MS.gene058354.t1 |
| chr3.2 | CDS | 2298588 | 2298590 | 2298588 | ID=cds.MS.gene058354.t1;Parent=MS.gene058354.t1 |
| chr3.2 | exon | 2297474 | 2297581 | 2297474 | ID=MS.gene058354.t1.exon2;Parent=MS.gene058354.t1 |
| chr3.2 | CDS | 2297474 | 2297581 | 2297474 | ID=cds.MS.gene058354.t1;Parent=MS.gene058354.t1 |
| chr3.2 | exon | 2297346 | 2297388 | 2297346 | ID=MS.gene058354.t1.exon3;Parent=MS.gene058354.t1 |
| chr3.2 | CDS | 2297346 | 2297388 | 2297346 | ID=cds.MS.gene058354.t1;Parent=MS.gene058354.t1 |
| chr3.2 | exon | 2296489 | 2296684 | 2296489 | ID=MS.gene058354.t1.exon4;Parent=MS.gene058354.t1 |
| chr3.2 | CDS | 2296489 | 2296684 | 2296489 | ID=cds.MS.gene058354.t1;Parent=MS.gene058354.t1 |
| chr3.2 | exon | 2296010 | 2296205 | 2296010 | ID=MS.gene058354.t1.exon5;Parent=MS.gene058354.t1 |
| chr3.2 | CDS | 2296010 | 2296205 | 2296010 | ID=cds.MS.gene058354.t1;Parent=MS.gene058354.t1 |
| Gene Sequence |
| Protein sequence |
