AlfalfaGEDB | MS.gene73833

M. sativa cultivar XinJiangDaYe / MS.gene73833

KEGG: K02868
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00281.22 PF00673.24

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73833.t1	XP_004293968.1	99.4	181	1	0	1	181	1	181	1.20E-96	362.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73833.t1	P46287	99.4	181	1	0	1	181	1	181	2.8e-99	362.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73833.t1	A0A0S3SAC0	98.9	181	2	0	1	181	1	181	1.9e-96	361.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049361	MS.gene73833	0.836996	6.74E-57	-1.69E-46
MS.gene052664	MS.gene73833	0.867249	1.57E-65	-1.69E-46
MS.gene053224	MS.gene73833	0.810325	1.22E-50	-1.69E-46
MS.gene057641	MS.gene73833	0.83474	2.52E-56	-1.69E-46
MS.gene057643	MS.gene73833	0.839019	2.04E-57	-1.69E-46
MS.gene060432	MS.gene73833	0.819584	1.08E-52	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene066933	MS.gene73833	PPI
MS.gene73833	MS.gene016301	PPI
MS.gene73833	MS.gene060216	PPI
MS.gene73833	MS.gene034931	PPI
MS.gene73833	MS.gene071916	PPI
MS.gene73833	MS.gene48447	PPI
MS.gene73833	MS.gene045457	PPI
MS.gene73833	MS.gene045454	PPI
MS.gene73833	MS.gene002204	PPI
MS.gene73833	MS.gene63721	PPI
MS.gene066163	MS.gene73833	PPI
MS.gene040581	MS.gene73833	PPI
MS.gene73833	MS.gene063366	PPI
MS.gene73833	MS.gene041557	PPI
MS.gene058354	MS.gene73833	PPI
MS.gene73833	MS.gene018045	PPI
MS.gene73833	MS.gene039110	PPI
MS.gene73833	MS.gene036487	PPI
MS.gene73833	MS.gene035331	PPI
MS.gene73833	MS.gene59873	PPI
MS.gene73833	MS.gene031579	PPI
MS.gene73833	MS.gene058354	PPI
MS.gene013036	MS.gene73833	PPI
MS.gene70551	MS.gene73833	PPI
MS.gene006721	MS.gene73833	PPI
MS.gene73833	MS.gene020400	PPI
MS.gene73833	MS.gene59319	PPI
MS.gene42236	MS.gene73833	PPI
MS.gene73833	MS.gene023799	PPI
MS.gene73833	MS.gene52173	PPI
MS.gene27648	MS.gene73833	PPI
MS.gene047421	MS.gene73833	PPI
MS.gene73833	MS.gene47347	PPI
MS.gene73833	MS.gene78700	PPI
MS.gene73833	MS.gene010453	PPI
MS.gene73833	MS.gene01172	PPI
MS.gene73833	MS.gene99541	PPI
MS.gene047734	MS.gene73833	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73833.t1	MTR_8g046140	98.343	181	3	0	1	181	1	181	1.44e-132	369
MS.gene73833.t1	MTR_4g080740	98.343	181	3	0	1	181	1	181	1.77e-132	368
MS.gene73833.t1	MTR_3g007700	99.441	179	1	0	3	181	4	182	3.84e-132	367
MS.gene73833.t1	MTR_3g007690	80.663	181	33	2	2	180	61	241	1.63e-101	292

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73833.t1	AT2G42740	95.580	181	8	1	181	1	181	4.92e-129	360
MS.gene73833.t1	AT5G45775	95.028	181	9	1	181	1	181	2.14e-128	358
MS.gene73833.t1	AT4G18730	95.028	181	9	1	181	1	181	2.14e-128	358
MS.gene73833.t1	AT3G58700	95.028	181	9	1	181	1	181	2.14e-128	358
MS.gene73833.t1	AT5G45775	95.322	171	8	11	181	1	171	9.31e-121	338

Find 56 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GACCCTTCTACTGGTATTTA+TGG	0.148591	4.2:+29473755	MS.gene73833:CDS
TTGCTTTGGCTTTGGTATTC+AGG	0.174953	4.2:+29473250	MS.gene73833:CDS
TTCAGTGATACTGGTTGCTT+TGG	0.299214	4.2:+29473236	MS.gene73833:CDS
TATTCAGGAGCATATTGATT+TGG	0.317273	4.2:+29473265	MS.gene73833:CDS
TGACAAGGCAATGCAGCTTT+TGG	0.318529	4.2:+29473169	MS.gene73833:CDS
TGAACCTTGATCTCCCTCAT+TGG	0.332362	4.2:-29472275	None:intergenic
ATTCAGGAGCATATTGATTT+GGG	0.344346	4.2:+29473266	MS.gene73833:CDS
AGGAGGAACTTCAGTGATAC+TGG	0.352064	4.2:+29473227	MS.gene73833:CDS
GAACCTTGATCTCCCTCATT+GGG	0.354507	4.2:-29472274	None:intergenic
ATTCCATAAATACCAGTAGA+AGG	0.360196	4.2:-29473758	None:intergenic
CAATTGCCTGGGATTTGTTA+AGG	0.361161	4.2:-29473919	None:intergenic
TTTGACCTGGAACCACTTCA+TGG	0.374960	4.2:-29473882	None:intergenic
GATACTGGTTGCTTTGGCTT+TGG	0.383233	4.2:+29473242	MS.gene73833:CDS
TGATGCCATGAAGTGGTTCC+AGG	0.388963	4.2:+29473877	MS.gene73833:CDS
TGGGTTCGCCAGTTTCTTCT+CGG	0.418287	4.2:-29472255	None:intergenic
AGGTACACTGTGCGATCCTT+TGG	0.421779	4.2:+29473101	MS.gene73833:CDS
GGAGAGTGGTTTAAAGGTGA+AGG	0.433325	4.2:+29473190	MS.gene73833:CDS
CGACGACCCACACGGTATCC+AGG	0.444850	4.2:-29473806	None:intergenic
AATGGCTTCCGAGAAGAAAC+TGG	0.445897	4.2:+29472247	None:intergenic
TTCTACTGGTATTTATGGAA+TGG	0.448616	4.2:+29473760	MS.gene73833:CDS
CTCATTTCTTCTGATTCCAA+AGG	0.457634	4.2:-29473117	None:intergenic
AGTTTAACTAAACAATTGCC+TGG	0.470565	4.2:-29473931	None:intergenic
TTTGTTGTTCTGGAGCGCCC+TGG	0.479272	4.2:+29473788	MS.gene73833:CDS
TCCAGGTATGACCCTTCTAC+TGG	0.482968	4.2:+29473746	MS.gene73833:intron
CAACACGGGCCTTGCATCTG+CGG	0.505355	4.2:-29473829	None:intergenic
GGGTCGTCGCCGCAGATGCA+AGG	0.511173	4.2:+29473820	MS.gene73833:CDS
GTGGTTCCAGGTCAAATATG+AGG	0.522922	4.2:+29473889	MS.gene73833:CDS
AACATCTCCGTCGGTGAGAG+TGG	0.528749	4.2:+29472311	MS.gene73833:CDS
GAACCCAATGAGGGAGATCA+AGG	0.532538	4.2:+29472271	MS.gene73833:CDS
TAGGTGCTGGAACAACTTAG+TGG	0.535243	4.2:+29472442	MS.gene73833:intron
TCGTCTCACCAGAGCCGCTA+AGG	0.538952	4.2:+29472337	MS.gene73833:CDS
CGCAGATGCAAGGCCCGTGT+TGG	0.542392	4.2:+29473830	MS.gene73833:CDS
AACTAACCTTTGGAGAACAC+TGG	0.544806	4.2:-29472472	None:intergenic
GTTTAACTAAACAATTGCCT+GGG	0.556618	4.2:-29473930	None:intergenic
ACTAACCTTTGGAGAACACT+GGG	0.563850	4.2:-29472471	None:intergenic
TGGCATCATCCTTCGTGACA+CGG	0.570122	4.2:-29473862	None:intergenic
GAGCGCCCTGGATACCGTGT+GGG	0.587127	4.2:+29473800	MS.gene73833:CDS
CTCGTTCTCAACATCTCCGT+CGG	0.591586	4.2:+29472302	MS.gene73833:CDS
TTCCATAAATACCAGTAGAA+GGG	0.597500	4.2:-29473757	None:intergenic
CACGGTGTTGAATTCCAACA+CGG	0.601715	4.2:-29473844	None:intergenic
CGAAGGATGATGCCATGAAG+TGG	0.606576	4.2:+29473870	MS.gene73833:CDS
GGAGCGCCCTGGATACCGTG+TGG	0.607966	4.2:+29473799	MS.gene73833:CDS
GACGACCCACACGGTATCCA+GGG	0.608386	4.2:-29473805	None:intergenic
AGTGATCCTTAACAAATCCC+AGG	0.615373	4.2:+29473913	MS.gene73833:CDS
TGTTACTGTCAGAGGTGACA+AGG	0.617824	4.2:+29473154	MS.gene73833:CDS
TCACTCCCTCATATTTGACC+TGG	0.621443	4.2:-29473895	None:intergenic
TGGTTCCAGGTCAAATATGA+GGG	0.622773	4.2:+29473890	MS.gene73833:CDS
GCATGCTATGTTACTGTCAG+AGG	0.636257	4.2:+29473146	MS.gene73833:CDS
CAAACCCCAGTGTTCTCCAA+AGG	0.636410	4.2:+29472466	MS.gene73833:CDS
GAAACTGGCGAACCCAATGA+GGG	0.640398	4.2:+29472262	MS.gene73833:CDS
ACGATCTCCACTCTCACCGA+CGG	0.655877	4.2:-29472318	None:intergenic
ATCTGCGGCGACGACCCACA+CGG	0.666808	4.2:-29473814	None:intergenic
AGAAACTGGCGAACCCAATG+AGG	0.672801	4.2:+29472261	MS.gene73833:CDS
ACGGTGTTGAATTCCAACAC+GGG	0.675200	4.2:-29473843	None:intergenic
AATTCAACACCGTGTCACGA+AGG	0.700404	4.2:+29473853	MS.gene73833:CDS
CTAACCTTTGGAGAACACTG+GGG	0.723201	4.2:-29472470	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAAAATTATTGAAACATTAT+TGG	+	chr4.2:29473701-29473720	MS.gene73833:intron	10.0%
!!	TATTATATAATCTTATAAAC+TGG	+	chr4.2:29473015-29473034	MS.gene73833:intron	10.0%
!!!	ACAAATATTTTCAATTAATT+TGG	-	chr4.2:29473422-29473441	None:intergenic	10.0%
!!!	ATAAACTTTATTATCAATTT+TGG	+	chr4.2:29472586-29472605	MS.gene73833:intron	10.0%
!!!	TAAACTTTATTATCAATTTT+GGG	+	chr4.2:29472587-29472606	MS.gene73833:intron	10.0%
!!!	TTAATTACATGTTTTTTTAT+AGG	+	chr4.2:29472560-29472579	MS.gene73833:intron	10.0%
!!	AAAATAAATCCAAAAAAGAA+AGG	-	chr4.2:29473626-29473645	None:intergenic	15.0%
!!!	TATATATATTTTTGTGTTGT+AGG	+	chr4.2:29472423-29472442	MS.gene73833:intron	15.0%
!!!	TTTTGTAGAAATTTATTACT+GGG	+	chr4.2:29472493-29472512	MS.gene73833:intron	15.0%
!!	AAAGAAATGAAAGATGTTTA+CGG	+	chr4.2:29472885-29472904	MS.gene73833:intron	20.0%
!!	AAATTGCAAAAACAGATAAT+TGG	-	chr4.2:29473572-29473591	None:intergenic	20.0%
!!	CAAATAATATTGGATAAATG+TGG	+	chr4.2:29473042-29473061	MS.gene73833:intron	20.0%
!!	TATTTATGTTATCTTGCTTT+AGG	+	chr4.2:29473650-29473669	MS.gene73833:intron	20.0%
!!	TCAGACAAAAAAATTAACTT+GGG	+	chr4.2:29472661-29472680	MS.gene73833:intron	20.0%
!!	TTAAATCTTAACAACTATGA+AGG	-	chr4.2:29473684-29473703	None:intergenic	20.0%
!!	TTCAGACAAAAAAATTAACT+TGG	+	chr4.2:29472660-29472679	MS.gene73833:intron	20.0%
!!!	ATAATAAAGTTTGCTCTATA+TGG	+	chr4.2:29473478-29473497	MS.gene73833:intron	20.0%
!!!	GAAATTTTATGATATGACAT+AGG	+	chr4.2:29473367-29473386	MS.gene73833:intron	20.0%
!!!	GTTTTGTAGAAATTTATTAC+TGG	+	chr4.2:29472492-29472511	MS.gene73833:intron	20.0%
!!!	TAGTTATTGATAATGATGAA+AGG	+	chr4.2:29472766-29472785	MS.gene73833:intron	20.0%
!!!	TCTAATTTAGGGTTAATTAT+GGG	+	chr4.2:29472697-29472716	MS.gene73833:intron	20.0%
!	AACTGGCTATCAAATAATAT+TGG	+	chr4.2:29473032-29473051	MS.gene73833:intron	25.0%
!	ATTTCTACAAAACTAACCTT+TGG	-	chr4.2:29472485-29472504	None:intergenic	25.0%
!	TTGGTATGTAGTCTAATTTA+GGG	+	chr4.2:29472686-29472705	MS.gene73833:intron	25.0%
!	TTTATTATTCCTTGCTTTGT+TGG	+	chr4.2:29473450-29473469	MS.gene73833:intron	25.0%
!	TTTGGTATGTAGTCTAATTT+AGG	+	chr4.2:29472685-29472704	MS.gene73833:intron	25.0%
!!	AAAAAAATTAACTTGGGGTT+TGG	+	chr4.2:29472667-29472686	MS.gene73833:intron	25.0%
!!	CAGACAAAAAAATTAACTTG+GGG	+	chr4.2:29472662-29472681	MS.gene73833:intron	25.0%
!!	GTCTAATTTAGGGTTAATTA+TGG	+	chr4.2:29472696-29472715	MS.gene73833:intron	25.0%
!!	TTGTCAGAGATTAACATTTT+AGG	+	chr4.2:29473341-29473360	MS.gene73833:intron	25.0%
!!!	AATGGATTTTTTTGTTGTTC+TGG	+	chr4.2:29473778-29473797	MS.gene73833:CDS	25.0%
!!!	GTACATTAGATTTTTTAGCA+TGG	-	chr4.2:29472972-29472991	None:intergenic	25.0%
	AAATCCAAAAAAGAAAGGCA+TGG	-	chr4.2:29473621-29473640	None:intergenic	30.0%
	ATTCCATAAATACCAGTAGA+AGG	-	chr4.2:29473761-29473780	None:intergenic	30.0%
	TGAACTTGTGACTAAAATTG+CGG	+	chr4.2:29472791-29472810	MS.gene73833:intron	30.0%
	TTCCATAAATACCAGTAGAA+GGG	-	chr4.2:29473760-29473779	None:intergenic	30.0%
	TTCTACTGGTATTTATGGAA+TGG	+	chr4.2:29473760-29473779	MS.gene73833:CDS	30.0%
!	CATTTCTTTTCTTACATGTG+TGG	-	chr4.2:29472874-29472893	None:intergenic	30.0%
!	TATTCAGGAGCATATTGATT+TGG	+	chr4.2:29473265-29473284	MS.gene73833:CDS	30.0%
!!	ATTCAGGAGCATATTGATTT+GGG	+	chr4.2:29473266-29473285	MS.gene73833:CDS	30.0%
!!!	GATTTTTTAGCATGGAAACT+AGG	-	chr4.2:29472964-29472983	None:intergenic	30.0%
	ACCTCGCTGTAAAAATTCAA+AGG	-	chr4.2:29473085-29473104	None:intergenic	35.0%
	ACTGGGTTCTTATGTAATGA+TGG	+	chr4.2:29472510-29472529	MS.gene73833:intron	35.0%
	CTCATTTCTTCTGATTCCAA+AGG	-	chr4.2:29473120-29473139	None:intergenic	35.0%
	GTAAGCTTAAGAACAACTCT+TGG	+	chr4.2:29473295-29473314	MS.gene73833:intron	35.0%
	TTATATGCACCAACAAAGCA+AGG	-	chr4.2:29473462-29473481	None:intergenic	35.0%
	TTGTGACTAAAATTGCGGTA+AGG	+	chr4.2:29472796-29472815	MS.gene73833:intron	35.0%
!	ATCGATGTACTTGAGCATTT+TGG	+	chr4.2:29472918-29472937	MS.gene73833:intron	35.0%
!	CAGAGATTAACATTTTAGGC+AGG	+	chr4.2:29473345-29473364	MS.gene73833:intron	35.0%
!	GGTAATGAGTGTGGATTTTA+GGG	+	chr4.2:29472531-29472550	MS.gene73833:intron	35.0%
!	TCCTTTGAATTTTTACAGCG+AGG	+	chr4.2:29473081-29473100	MS.gene73833:intron	35.0%
!	TGTAATGATGGTAATGAGTG+TGG	+	chr4.2:29472522-29472541	MS.gene73833:intron	35.0%
!!	TATTTTTGTGTTGTAGGTGC+TGG	+	chr4.2:29472429-29472448	MS.gene73833:intron	35.0%
!!	TGAAGGAGTATGAACTTTTG+AGG	+	chr4.2:29473207-29473226	MS.gene73833:CDS	35.0%
!!	TGGTAATGAGTGTGGATTTT+AGG	+	chr4.2:29472530-29472549	MS.gene73833:intron	35.0%
	AACAAGGACTTATGTAGGCT+AGG	+	chr4.2:29473509-29473528	MS.gene73833:intron	40.0%
	AAGAGGGGTAAAAACCTTAG+CGG	-	chr4.2:29472354-29472373	None:intergenic	40.0%
	AGTGATCCTTAACAAATCCC+AGG	+	chr4.2:29473913-29473932	MS.gene73833:CDS	40.0%
	GACCCTTCTACTGGTATTTA+TGG	+	chr4.2:29473755-29473774	MS.gene73833:CDS	40.0%
	GACTAAAATTGCGGTAAGGT+TGG	+	chr4.2:29472800-29472819	MS.gene73833:intron	40.0%
	TGACATAGGTTGTGTACTTG+TGG	+	chr4.2:29473381-29473400	MS.gene73833:intron	40.0%
	TGAGGAACAAGGACTTATGT+AGG	+	chr4.2:29473504-29473523	MS.gene73833:intron	40.0%
	TGGTTCCAGGTCAAATATGA+GGG	+	chr4.2:29473890-29473909	MS.gene73833:CDS	40.0%
!	AACTAACCTTTGGAGAACAC+TGG	-	chr4.2:29472475-29472494	None:intergenic	40.0%
!	ACTAACCTTTGGAGAACACT+GGG	-	chr4.2:29472474-29472493	None:intergenic	40.0%
!	CTATATGGTCTTGAGGAACA+AGG	+	chr4.2:29473493-29473512	MS.gene73833:intron	40.0%
!	GTTTGCTCTATATGGTCTTG+AGG	+	chr4.2:29473486-29473505	MS.gene73833:intron	40.0%
!	TTCAGTGATACTGGTTGCTT+TGG	+	chr4.2:29473236-29473255	MS.gene73833:CDS	40.0%
!!	AAATTGCGGTAAGGTTGGTA+CGG	+	chr4.2:29472805-29472824	MS.gene73833:intron	40.0%
!!	AGGAGTATGAACTTTTGAGG+AGG	+	chr4.2:29473210-29473229	MS.gene73833:CDS	40.0%
!!	CAATTGCCTGGGATTTGTTA+AGG	-	chr4.2:29473922-29473941	None:intergenic	40.0%
!!	GCTTTTGGAGAGTGGTTTAA+AGG	+	chr4.2:29473184-29473203	MS.gene73833:CDS	40.0%
!!	TTGCTTTGGCTTTGGTATTC+AGG	+	chr4.2:29473250-29473269	MS.gene73833:CDS	40.0%
!!!	ACTGCCATGCCTTTCTTTTT+TGG	+	chr4.2:29473614-29473633	MS.gene73833:intron	40.0%
	AACTCAGATCCAGTGAGAAG+AGG	-	chr4.2:29472371-29472390	None:intergenic	45.0%
	AATTCAACACCGTGTCACGA+AGG	+	chr4.2:29473853-29473872	MS.gene73833:CDS	45.0%
	ACTCAGATCCAGTGAGAAGA+GGG	-	chr4.2:29472370-29472389	None:intergenic	45.0%
	AGGAGGAACTTCAGTGATAC+TGG	+	chr4.2:29473227-29473246	MS.gene73833:CDS	45.0%
	GAACCTTGATCTCCCTCATT+GGG	-	chr4.2:29472277-29472296	None:intergenic	45.0%
	GAGCAGATTGTCAAGCATCA+GGG	-	chr4.2:29473728-29473747	None:intergenic	45.0%
	GCATGCTATGTTACTGTCAG+AGG	+	chr4.2:29473146-29473165	MS.gene73833:CDS	45.0%
	GGAGAGTGGTTTAAAGGTGA+AGG	+	chr4.2:29473190-29473209	MS.gene73833:CDS	45.0%
	GTGGTTCCAGGTCAAATATG+AGG	+	chr4.2:29473889-29473908	MS.gene73833:CDS	45.0%
	TCACTCCCTCATATTTGACC+TGG	-	chr4.2:29473898-29473917	None:intergenic	45.0%
	TGAACCTTGATCTCCCTCAT+TGG	-	chr4.2:29472278-29472297	None:intergenic	45.0%
	TGTTACTGTCAGAGGTGACA+AGG	+	chr4.2:29473154-29473173	MS.gene73833:CDS	45.0%
	TTTGACCTGGAACCACTTCA+TGG	-	chr4.2:29473885-29473904	None:intergenic	45.0%
!	ACGGTGTTGAATTCCAACAC+GGG	-	chr4.2:29473846-29473865	None:intergenic	45.0%
!	CACGGTGTTGAATTCCAACA+CGG	-	chr4.2:29473847-29473866	None:intergenic	45.0%
!	CTAACCTTTGGAGAACACTG+GGG	-	chr4.2:29472473-29472492	None:intergenic	45.0%
!	GATACTGGTTGCTTTGGCTT+TGG	+	chr4.2:29473242-29473261	MS.gene73833:CDS	45.0%
!	GTTTTTACCCCTCTTCTCAC+TGG	+	chr4.2:29472359-29472378	MS.gene73833:intron	45.0%
!	TGACAAGGCAATGCAGCTTT+TGG	+	chr4.2:29473169-29473188	MS.gene73833:CDS	45.0%
!!	AATTGCGGTAAGGTTGGTAC+GGG	+	chr4.2:29472806-29472825	MS.gene73833:intron	45.0%
!!	TAGGTGCTGGAACAACTTAG+TGG	+	chr4.2:29472442-29472461	MS.gene73833:intron	45.0%
	ACCAGTAGAAGGGTCATACC+TGG	-	chr4.2:29473750-29473769	None:intergenic	50.0%
	AGAAACTGGCGAACCCAATG+AGG	+	chr4.2:29472261-29472280	MS.gene73833:CDS	50.0%
	AGGTACACTGTGCGATCCTT+TGG	+	chr4.2:29473101-29473120	MS.gene73833:CDS	50.0%
	CAAACCCCAGTGTTCTCCAA+AGG	+	chr4.2:29472466-29472485	MS.gene73833:CDS	50.0%
	CGAAGGATGATGCCATGAAG+TGG	+	chr4.2:29473870-29473889	MS.gene73833:CDS	50.0%
	CTCAGATCCAGTGAGAAGAG+GGG	-	chr4.2:29472369-29472388	None:intergenic	50.0%
	CTCGTTCTCAACATCTCCGT+CGG	+	chr4.2:29472302-29472321	MS.gene73833:CDS	50.0%
	GAAACTGGCGAACCCAATGA+GGG	+	chr4.2:29472262-29472281	MS.gene73833:CDS	50.0%
	GAACCCAATGAGGGAGATCA+AGG	+	chr4.2:29472271-29472290	MS.gene73833:CDS	50.0%
	GATGCTTGACAATCTGCTCC+AGG	+	chr4.2:29473729-29473748	MS.gene73833:intron	50.0%
	GGAGCAGATTGTCAAGCATC+AGG	-	chr4.2:29473729-29473748	None:intergenic	50.0%
	GGTAAAAACCTTAGCGGCTC+TGG	-	chr4.2:29472348-29472367	None:intergenic	50.0%
	GGTACGGGTCTTAGAGGAAT+AGG	+	chr4.2:29472821-29472840	MS.gene73833:intron	50.0%
	TCCAGGTATGACCCTTCTAC+TGG	+	chr4.2:29473746-29473765	MS.gene73833:intron	50.0%
	TGATGCCATGAAGTGGTTCC+AGG	+	chr4.2:29473877-29473896	MS.gene73833:CDS	50.0%
	TGGCATCATCCTTCGTGACA+CGG	-	chr4.2:29473865-29473884	None:intergenic	50.0%
	TGGGTTCGCCAGTTTCTTCT+CGG	-	chr4.2:29472258-29472277	None:intergenic	50.0%
!!	AAGGTTGGTACGGGTCTTAG+AGG	+	chr4.2:29472815-29472834	MS.gene73833:intron	50.0%
!!	GCAATGCAGCTTTTGGAGAG+TGG	+	chr4.2:29473176-29473195	MS.gene73833:CDS	50.0%
	AACATCTCCGTCGGTGAGAG+TGG	+	chr4.2:29472311-29472330	MS.gene73833:CDS	55.0%
	ACGATCTCCACTCTCACCGA+CGG	-	chr4.2:29472321-29472340	None:intergenic	55.0%
!!	TTTGTTGTTCTGGAGCGCCC+TGG	+	chr4.2:29473788-29473807	MS.gene73833:CDS	55.0%
	CAACACGGGCCTTGCATCTG+CGG	-	chr4.2:29473832-29473851	None:intergenic	60.0%
	GACGACCCACACGGTATCCA+GGG	-	chr4.2:29473808-29473827	None:intergenic	60.0%
	TCGTCTCACCAGAGCCGCTA+AGG	+	chr4.2:29472337-29472356	MS.gene73833:CDS	60.0%
	ATCTGCGGCGACGACCCACA+CGG	-	chr4.2:29473817-29473836	None:intergenic	65.0%
	CGACGACCCACACGGTATCC+AGG	-	chr4.2:29473809-29473828	None:intergenic	65.0%
	CGCAGATGCAAGGCCCGTGT+TGG	+	chr4.2:29473830-29473849	MS.gene73833:CDS	65.0%
	GAGCGCCCTGGATACCGTGT+GGG	+	chr4.2:29473800-29473819	MS.gene73833:CDS	65.0%
	GGGTCGTCGCCGCAGATGCA+AGG	+	chr4.2:29473820-29473839	MS.gene73833:CDS	70.0%
!	GGAGCGCCCTGGATACCGTG+TGG	+	chr4.2:29473799-29473818	MS.gene73833:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	29472248	29473946	29472248	ID=MS.gene73833
chr4.2	mRNA	29472248	29473946	29472248	ID=MS.gene73833.t1;Parent=MS.gene73833
chr4.2	exon	29472248	29472358	29472248	ID=MS.gene73833.t1.exon1;Parent=MS.gene73833.t1
chr4.2	CDS	29472248	29472358	29472248	ID=cds.MS.gene73833.t1;Parent=MS.gene73833.t1
chr4.2	exon	29472445	29472487	29472445	ID=MS.gene73833.t1.exon2;Parent=MS.gene73833.t1
chr4.2	CDS	29472445	29472487	29472445	ID=cds.MS.gene73833.t1;Parent=MS.gene73833.t1
chr4.2	exon	29473099	29473294	29473099	ID=MS.gene73833.t1.exon3;Parent=MS.gene73833.t1
chr4.2	CDS	29473099	29473294	29473099	ID=cds.MS.gene73833.t1;Parent=MS.gene73833.t1
chr4.2	exon	29473751	29473946	29473751	ID=MS.gene73833.t1.exon4;Parent=MS.gene73833.t1
chr4.2	CDS	29473751	29473946	29473751	ID=cds.MS.gene73833.t1;Parent=MS.gene73833.t1

Gene Sequence

>MS.gene73833

ATGGCTTCCGAGAAGAAACTGGCGAACCCAATGAGGGAGATCAAGGTTCAGAAGCTCGTTCTCAACATCTCCGTCGGTGAGAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTTTTTACCCCTCTTCTCACTGGATCTGAGTTTTTTTTTTTTTTCAATTTAAAGATTTCATTTTTATATATATTTTTGTGTTGTAGGTGCTGGAACAACTTAGTGGTCAAACCCCAGTGTTCTCCAAAGGTTAGTTTTGTAGAAATTTATTACTGGGTTCTTATGTAATGATGGTAATGAGTGTGGATTTTAGGGTTATGTTTAATTACATGTTTTTTTATAGGTAAATAAACTTTATTATCAATTTTGGGATTCTATCAGTTTTTCTTCACAGACATAGTGATTTGAAAGTGTAATGTGTTTCAGACAAAAAAATTAACTTGGGGTTTGGTATGTAGTCTAATTTAGGGTTAATTATGGGATTTTCAATTGTGTTATGTTTTTGTAGTGATTGTAGTTTGATTTTGTAGTTATTGATAATGATGAAAGGTTTGAACTTGTGACTAAAATTGCGGTAAGGTTGGTACGGGTCTTAGAGGAATAGGATTAATGTAAGCAATAAAATATCAAATCCACACATGTAAGAAAAGAAATGAAAGATGTTTACGGTCTTTGACTTATCGATGTACTTGAGCATTTTGGCTTACTTTTGCTCAATTTAACCTAGTTTCCATGCTAAAAAATCTAATGTACTTTATTACATAAAATGTACTTTATATTATATAATCTTATAAACTGGCTATCAAATAATATTGGATAAATGTGGTTGTCTCATTTGTTTCTCCTTTGAATTTTTACAGCGAGGTACACTGTGCGATCCTTTGGAATCAGAAGAAATGAGAAGATTGCATGCTATGTTACTGTCAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGTTTAAAGGTGAAGGAGTATGAACTTTTGAGGAGGAACTTCAGTGATACTGGTTGCTTTGGCTTTGGTATTCAGGAGCATATTGATTTGGGAATCAAGTAAGCTTAAGAACAACTCTTGGATTTCATGCTATTTTTTTTACTTTTGTCAGAGATTAACATTTTAGGCAGGAAATTTTATGATATGACATAGGTTGTGTACTTGTGGTACAGACTGCATGTTCCAAATTAATTGAAAATATTTGTGCTTCGTTTTTATTATTCCTTGCTTTGTTGGTGCATATAATAAAGTTTGCTCTATATGGTCTTGAGGAACAAGGACTTATGTAGGCTAGGTTCATTTGTGTGATTTAGTTTTTTTATGAAGTAAAGTCCAATTATCTGTTTTTGCAATTTTGCTTACTGTACTTGAAATGACACTGCCATGCCTTTCTTTTTTGGATTTATTTTTCTGTATTTATGTTATCTTGCTTTAGGTTCATTCTCCTTCATAGTTGTTAAGATTTAAAATTATTGAAACATTATTGGTCCCTGATGCTTGACAATCTGCTCCAGGTATGACCCTTCTACTGGTATTTATGGAATGGATTTTTTTGTTGTTCTGGAGCGCCCTGGATACCGTGTGGGTCGTCGCCGCAGATGCAAGGCCCGTGTTGGAATTCAACACCGTGTCACGAAGGATGATGCCATGAAGTGGTTCCAGGTCAAATATGAGGGAGTGATCCTTAACAAATCCCAGGCAATTGTTTAG

Protein sequence

>MS.gene73833.t1

MASEKKLANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAIV