Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59873.t1 | XP_003628237.1 | 98.9 | 179 | 2 | 0 | 2 | 180 | 3 | 181 | 8.40E-95 | 356.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59873.t1 | P46287 | 98.9 | 179 | 2 | 0 | 2 | 180 | 3 | 181 | 2.6e-97 | 355.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59873.t1 | G7L8I9 | 98.9 | 179 | 2 | 0 | 2 | 180 | 3 | 181 | 6.0e-95 | 356.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050791 | MS.gene59873 | 0.802789 | 4.75E-49 | -1.69E-46 |
| MS.gene050912 | MS.gene59873 | 0.811613 | 6.41E-51 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59873.t1 | MTR_3g007700 | 98.333 | 180 | 3 | 0 | 1 | 180 | 3 | 182 | 7.28e-131 | 364 |
| MS.gene59873.t1 | MTR_8g046140 | 98.883 | 179 | 2 | 0 | 2 | 180 | 3 | 181 | 1.01e-130 | 363 |
| MS.gene59873.t1 | MTR_4g080740 | 97.765 | 179 | 4 | 0 | 2 | 180 | 3 | 181 | 8.40e-130 | 361 |
| MS.gene59873.t1 | MTR_3g007690 | 80.337 | 178 | 34 | 1 | 3 | 179 | 64 | 241 | 4.49e-101 | 291 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59873.t1 | AT2G42740 | 95.556 | 180 | 8 | 0 | 1 | 180 | 2 | 181 | 2.86e-127 | 355 |
| MS.gene59873.t1 | AT5G45775 | 95.000 | 180 | 9 | 0 | 1 | 180 | 2 | 181 | 1.25e-126 | 353 |
| MS.gene59873.t1 | AT4G18730 | 95.000 | 180 | 9 | 0 | 1 | 180 | 2 | 181 | 1.25e-126 | 353 |
| MS.gene59873.t1 | AT3G58700 | 95.000 | 180 | 9 | 0 | 1 | 180 | 2 | 181 | 1.25e-126 | 353 |
| MS.gene59873.t1 | AT5G45775 | 96.471 | 170 | 6 | 0 | 10 | 179 | 1 | 170 | 2.76e-121 | 340 |
Find 47 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCTTCAACTGGTATTTA+TGG | 0.121344 | 8.3:+53456696 | MS.gene59873:CDS |
| GCTTGCTATGTGACTGTTAG+AGG | 0.280983 | 8.3:+53456046 | MS.gene59873:CDS |
| TTTAGTGATACCGGTTGTTT+TGG | 0.285925 | 8.3:+53456136 | MS.gene59873:CDS |
| TAAAATTACCTTTGCAGCTC+TGG | 0.312435 | 8.3:-53453828 | None:intergenic |
| AGATACACCGTCCGTTCTTT+TGG | 0.314871 | 8.3:+53456001 | MS.gene59873:CDS |
| TGACAAGGCAATGCAGCTTT+TGG | 0.318529 | 8.3:+53456069 | MS.gene59873:CDS |
| ACGACGTCCCACACGGTAAC+CGG | 0.325434 | 8.3:-53456748 | None:intergenic |
| CTTTGGAAAACACTGGGGTT+TGG | 0.360701 | 8.3:-53453942 | None:intergenic |
| CGATGCCATGAAGTGGTTCC+AGG | 0.381480 | 8.3:+53456818 | MS.gene59873:CDS |
| TTTCACCTGGAACCACTTCA+TGG | 0.397811 | 8.3:-53456823 | None:intergenic |
| CTCAGGTATGATCCTTCAAC+TGG | 0.410746 | 8.3:+53456687 | MS.gene59873:intron |
| TATTCAGGAGCATATTGATC+TGG | 0.422822 | 8.3:+53456165 | MS.gene59873:CDS |
| TTCGTTGTTCTGGAGCGTCC+CGG | 0.445136 | 8.3:+53456729 | MS.gene59873:CDS |
| CGTCGGTGCAAGGCTCGTGT+TGG | 0.455767 | 8.3:+53456771 | MS.gene59873:CDS |
| CTCGTTCTTAATATCTCTGT+TGG | 0.461901 | 8.3:+53453785 | MS.gene59873:CDS |
| CGTCCTTTGTTACGCGATGT+TGG | 0.468785 | 8.3:-53456797 | None:intergenic |
| GTCGGTGCAAGGCTCGTGTT+GGG | 0.471084 | 8.3:+53456772 | MS.gene59873:CDS |
| TTCAACTGGTATTTATGGAA+TGG | 0.482662 | 8.3:+53456701 | MS.gene59873:CDS |
| AATATCTCTGTTGGTGAAAG+TGG | 0.486734 | 8.3:+53453794 | MS.gene59873:CDS |
| ATTCCATAAATACCAGTTGA+AGG | 0.490800 | 8.3:-53456699 | None:intergenic |
| GGAGAGTGGTTTGAAGGTGA+AGG | 0.491764 | 8.3:+53456090 | MS.gene59873:CDS |
| CTGAACCTTGATATCCCTCA+TGG | 0.500440 | 8.3:-53453759 | None:intergenic |
| TATAAACCTTTGGAAAACAC+TGG | 0.500470 | 8.3:-53453949 | None:intergenic |
| GGGACGTCGTCGTCGGTGCA+AGG | 0.515936 | 8.3:+53456761 | MS.gene59873:CDS |
| CGACGTCCCACACGGTAACC+GGG | 0.517440 | 8.3:-53456747 | None:intergenic |
| ATAAACCTTTGGAAAACACT+GGG | 0.526168 | 8.3:-53453948 | None:intergenic |
| CAATCGCCTGTGACTTGTTG+AGG | 0.534551 | 8.3:-53456860 | None:intergenic |
| AATACCGAATCCAAAACAAC+CGG | 0.535665 | 8.3:-53456146 | None:intergenic |
| GAACACCATGAGGGATATCA+AGG | 0.552248 | 8.3:+53453754 | MS.gene59873:CDS |
| ATTCAGGAGCATATTGATCT+GGG | 0.553824 | 8.3:+53456166 | MS.gene59873:CDS |
| TGGTTCCAGGTGAAATATGA+AGG | 0.565205 | 8.3:+53456831 | MS.gene59873:CDS |
| TTCTTCTAATACCAAAAGAA+CGG | 0.565907 | 8.3:-53456012 | None:intergenic |
| ACCGTGTGGGACGTCGTCGT+CGG | 0.567737 | 8.3:+53456754 | MS.gene59873:CDS |
| TCGTCTCACCAGAGCTGCAA+AGG | 0.570040 | 8.3:+53453820 | MS.gene59873:CDS |
| GAGCGTCCCGGTTACCGTGT+GGG | 0.573313 | 8.3:+53456741 | MS.gene59873:CDS |
| TAACACCTTCATATTTCACC+TGG | 0.578904 | 8.3:-53456836 | None:intergenic |
| TGTTATCCTCAACAAGTCAC+AGG | 0.598472 | 8.3:+53456854 | MS.gene59873:CDS |
| GATCCAACATCGCGTAACAA+AGG | 0.602047 | 8.3:+53456794 | MS.gene59873:CDS |
| GGAGCGTCCCGGTTACCGTG+TGG | 0.619085 | 8.3:+53456740 | MS.gene59873:CDS |
| TCTAATACCAAAAGAACGGA+CGG | 0.628670 | 8.3:-53456008 | None:intergenic |
| CAAAGGACGATGCCATGAAG+TGG | 0.630614 | 8.3:+53456811 | MS.gene59873:CDS |
| AGAAACTCTCGAACACCATG+AGG | 0.653183 | 8.3:+53453744 | MS.gene59873:CDS |
| ACCGACGACGACGTCCCACA+CGG | 0.654712 | 8.3:-53456755 | None:intergenic |
| TGTGACTGTTAGAGGTGACA+AGG | 0.658203 | 8.3:+53456054 | MS.gene59873:CDS |
| TAAACCTTTGGAAAACACTG+GGG | 0.679293 | 8.3:-53453947 | None:intergenic |
| GAAACTCTCGAACACCATGA+GGG | 0.686507 | 8.3:+53453745 | MS.gene59873:CDS |
| CAGGTGTTGGAACAACTCAG+TGG | 0.734121 | 8.3:+53453919 | MS.gene59873:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GCAAAATAATAAAAATAAAT+TGG | - | chr8.3:53455778-53455797 | None:intergenic | 10.0% |
| !! | TAAAGTTGAAAATTAAATTA+AGG | - | chr8.3:53453997-53454016 | None:intergenic | 10.0% |
| !!! | TTTTTTTCTTTTTTACTAAA+AGG | + | chr8.3:53454967-53454986 | MS.gene59873:intron | 10.0% |
| !! | AACTATTAAAATCAAAATCA+AGG | - | chr8.3:53454440-53454459 | None:intergenic | 15.0% |
| !! | CAAAATTAAATATAAACCTT+TGG | - | chr8.3:53453962-53453981 | None:intergenic | 15.0% |
| !! | TATTCTTGTATATTTGAATA+AGG | + | chr8.3:53454513-53454532 | MS.gene59873:intron | 15.0% |
| !! | TTAATGAGAATTAATCTTAA+GGG | + | chr8.3:53455551-53455570 | MS.gene59873:intron | 15.0% |
| !! | TTTAATGAGAATTAATCTTA+AGG | + | chr8.3:53455550-53455569 | MS.gene59873:intron | 15.0% |
| !!! | ATTTTCGTTTTTTTTCTTTT+TGG | + | chr8.3:53455973-53455992 | MS.gene59873:intron | 15.0% |
| !!! | ATTTTGATTTTAATAGTTGA+GGG | + | chr8.3:53454442-53454461 | MS.gene59873:intron | 15.0% |
| !!! | TAGATGATTTTAATAGTTTA+GGG | + | chr8.3:53454334-53454353 | MS.gene59873:intron | 15.0% |
| !!! | TATGATTGTTTATAAGTTTT+AGG | + | chr8.3:53455508-53455527 | MS.gene59873:intron | 15.0% |
| !!! | TTCTTCTGATATTTTAATTT+AGG | - | chr8.3:53455156-53455175 | None:intergenic | 15.0% |
| !!! | TTTCATTTTTTGTATATATC+AGG | + | chr8.3:53453900-53453919 | MS.gene59873:intron | 15.0% |
| !! | AACATAAATCATAACAAACT+TGG | - | chr8.3:53456652-53456671 | None:intergenic | 20.0% |
| !! | AACTATTAAAATCACCTAAA+AGG | + | chr8.3:53454230-53454249 | MS.gene59873:intron | 20.0% |
| !! | ATTACTATTCTATTTGATAC+TGG | + | chr8.3:53455389-53455408 | MS.gene59873:intron | 20.0% |
| !! | CATTTAGAAAACAAATGTTA+AGG | - | chr8.3:53455229-53455248 | None:intergenic | 20.0% |
| !! | CTTAAATTAAAATGCCTAAA+TGG | + | chr8.3:53455293-53455312 | MS.gene59873:intron | 20.0% |
| !! | GAAAAAGTTTACATAATTCT+AGG | + | chr8.3:53456463-53456482 | MS.gene59873:intron | 20.0% |
| !! | GGGAAAAAAAAAAAAAAACA+AGG | - | chr8.3:53455434-53455453 | None:intergenic | 20.0% |
| !! | TAAATTGACTGTTAATTCTA+GGG | + | chr8.3:53454388-53454407 | MS.gene59873:intron | 20.0% |
| !! | TGAATGGCAATAAAAATTAA+GGG | + | chr8.3:53454580-53454599 | MS.gene59873:intron | 20.0% |
| !! | TGATTTGAATGAGAATAAAA+TGG | + | chr8.3:53455060-53455079 | MS.gene59873:intron | 20.0% |
| !! | TTACTATTCTATTTGATACT+GGG | + | chr8.3:53455390-53455409 | MS.gene59873:intron | 20.0% |
| !! | TTGAATGGCAATAAAAATTA+AGG | + | chr8.3:53454579-53454598 | MS.gene59873:intron | 20.0% |
| !! | TTTCATATCTATTAAATGCT+GGG | + | chr8.3:53455939-53455958 | MS.gene59873:intron | 20.0% |
| !!! | AAAATTTGAAATTCAGTCTT+TGG | + | chr8.3:53456566-53456585 | MS.gene59873:intron | 20.0% |
| !!! | AATCAATATCCTAAAGTTTT+AGG | + | chr8.3:53454138-53454157 | MS.gene59873:intron | 20.0% |
| !!! | ATCAATATCCTAAAGTTTTA+GGG | + | chr8.3:53454139-53454158 | MS.gene59873:intron | 20.0% |
| !!! | CTAGATGATTTTAATAGTTT+AGG | + | chr8.3:53454333-53454352 | MS.gene59873:intron | 20.0% |
| !!! | GATTTTGATTTTAATAGTTG+AGG | + | chr8.3:53454441-53454460 | MS.gene59873:intron | 20.0% |
| !!! | TATTATTTTGCCTTGAAAAT+TGG | + | chr8.3:53455787-53455806 | MS.gene59873:intron | 20.0% |
| !!! | TTTTCATATCTATTAAATGC+TGG | + | chr8.3:53455938-53455957 | MS.gene59873:intron | 20.0% |
| !!! | TTTTGATTTTAATAGTTGAG+GGG | + | chr8.3:53454443-53454462 | MS.gene59873:intron | 20.0% |
| ! | AAAAACGAAAATCAGTTAAC+TGG | - | chr8.3:53455965-53455984 | None:intergenic | 25.0% |
| ! | AAAACAACCAAAAACTTTCA+AGG | - | chr8.3:53454693-53454712 | None:intergenic | 25.0% |
| ! | ACACTGTACATGAATATTAT+AGG | + | chr8.3:53455477-53455496 | MS.gene59873:intron | 25.0% |
| ! | ATAAATCATAACAAACTTGG+TGG | - | chr8.3:53456649-53456668 | None:intergenic | 25.0% |
| ! | ATCAATGTAGTGAAAAACAT+TGG | - | chr8.3:53454853-53454872 | None:intergenic | 25.0% |
| ! | CTAAATTGACTGTTAATTCT+AGG | + | chr8.3:53454387-53454406 | MS.gene59873:intron | 25.0% |
| ! | GAATGAGAATAAAATGGAAA+GGG | + | chr8.3:53455066-53455085 | MS.gene59873:intron | 25.0% |
| ! | GTGTAATTCATGTTTAATAG+TGG | + | chr8.3:53454784-53454803 | MS.gene59873:intron | 25.0% |
| ! | TACTATTCTATTTGATACTG+GGG | + | chr8.3:53455391-53455410 | MS.gene59873:intron | 25.0% |
| ! | TGAATGAGAATAAAATGGAA+AGG | + | chr8.3:53455065-53455084 | MS.gene59873:intron | 25.0% |
| ! | TTCTTCTAATACCAAAAGAA+CGG | - | chr8.3:53456015-53456034 | None:intergenic | 25.0% |
| !! | AAAACAACCAAAAGTTTTCA+TGG | - | chr8.3:53455664-53455683 | None:intergenic | 25.0% |
| !! | ATCTTCTGGTATTTTCATTT+AGG | - | chr8.3:53454670-53454689 | None:intergenic | 25.0% |
| !! | TTGTTTAAAACAGTTTCACA+TGG | - | chr8.3:53456300-53456319 | None:intergenic | 25.0% |
| !! | TTTAACATTGTTTCTTTCTC+AGG | + | chr8.3:53456670-53456689 | MS.gene59873:intron | 25.0% |
| !! | TTTTTGTATATATCAGGTGT+TGG | + | chr8.3:53453906-53453925 | MS.gene59873:intron | 25.0% |
| !!! | AGAAGAAATTTTAGTGATAC+CGG | + | chr8.3:53456127-53456146 | MS.gene59873:CDS | 25.0% |
| !!! | CTGTTGACTCAATTATAAAA+TGG | - | chr8.3:53455094-53455113 | None:intergenic | 25.0% |
| !!! | GATAGTATTTTTGTGCTTAA+TGG | + | chr8.3:53454099-53454118 | MS.gene59873:intron | 25.0% |
| !!! | GATCTAGTTTAAGTTTTGAA+TGG | + | chr8.3:53454564-53454583 | MS.gene59873:intron | 25.0% |
| !!! | TTTTCAAGTCACAATAATCT+GGG | + | chr8.3:53455680-53455699 | MS.gene59873:intron | 25.0% |
| AAAAACTTTCAAGGATCTTC+TGG | - | chr8.3:53454684-53454703 | None:intergenic | 30.0% | |
| AAAACTTGATTTAGCATGCA+GGG | - | chr8.3:53455360-53455379 | None:intergenic | 30.0% | |
| AAATTATGGCTAAAGCTATC+AGG | + | chr8.3:53456383-53456402 | MS.gene59873:intron | 30.0% | |
| AACAGTTTCAACTCAAAACA+TGG | - | chr8.3:53455320-53455339 | None:intergenic | 30.0% | |
| ACAATCAACCCTAAAACTTT+AGG | - | chr8.3:53454150-53454169 | None:intergenic | 30.0% | |
| ACAGTTTCAACTCAAAACAT+GGG | - | chr8.3:53455319-53455338 | None:intergenic | 30.0% | |
| ACGTAAAAATCGGATTAACT+CGG | - | chr8.3:53456528-53456547 | None:intergenic | 30.0% | |
| ACTATTCTATTTGATACTGG+GGG | + | chr8.3:53455392-53455411 | MS.gene59873:intron | 30.0% | |
| AGATATGAAAACTTGACGAT+CGG | - | chr8.3:53455929-53455948 | None:intergenic | 30.0% | |
| AGTTCTTCAAGAGGAAATTA+TGG | + | chr8.3:53456369-53456388 | MS.gene59873:intron | 30.0% | |
| ATTATAATGAGTCAACAGCA+GGG | + | chr8.3:53454610-53454629 | MS.gene59873:intron | 30.0% | |
| ATTATATTTGAGTCACAGCA+GGG | + | chr8.3:53455578-53455597 | MS.gene59873:intron | 30.0% | |
| ATTCCATAAATACCAGTTGA+AGG | - | chr8.3:53456702-53456721 | None:intergenic | 30.0% | |
| GATGGAATATCATCAGAAAT+CGG | - | chr8.3:53456625-53456644 | None:intergenic | 30.0% | |
| GCTTAAAGACTGAAATGATA+AGG | - | chr8.3:53456595-53456614 | None:intergenic | 30.0% | |
| GCTTAAAGAGACGTAAAAAT+CGG | - | chr8.3:53456538-53456557 | None:intergenic | 30.0% | |
| TAATAGTTTAGGGACTAAAC+TGG | + | chr8.3:53454344-53454363 | MS.gene59873:intron | 30.0% | |
| TAATGATTCAGTTCTTCAAG+AGG | + | chr8.3:53456360-53456379 | MS.gene59873:intron | 30.0% | |
| TATTATAATGAGTCAACAGC+AGG | + | chr8.3:53454609-53454628 | MS.gene59873:intron | 30.0% | |
| TATTATATTTGAGTCACAGC+AGG | + | chr8.3:53455577-53455596 | MS.gene59873:intron | 30.0% | |
| TTATAATTGAGTCAACAGCA+GGG | + | chr8.3:53455096-53455115 | MS.gene59873:intron | 30.0% | |
| TTCAACTGGTATTTATGGAA+TGG | + | chr8.3:53456701-53456720 | MS.gene59873:CDS | 30.0% | |
| TTGAAAATTGGTTGACGATA+TGG | + | chr8.3:53455799-53455818 | MS.gene59873:intron | 30.0% | |
| TTGCTGTCAATAAGAAAAGA+GGG | - | chr8.3:53455454-53455473 | None:intergenic | 30.0% | |
| TTGTTTATACCAGTTTCACA+TGG | - | chr8.3:53456261-53456280 | None:intergenic | 30.0% | |
| TTGTTTATCACAATGCATGT+TGG | + | chr8.3:53456490-53456509 | MS.gene59873:intron | 30.0% | |
| TTTATAATTGAGTCAACAGC+AGG | + | chr8.3:53455095-53455114 | MS.gene59873:intron | 30.0% | |
| ! | AGAAGATCCATGAAAACTTT+TGG | + | chr8.3:53455654-53455673 | MS.gene59873:intron | 30.0% |
| ! | AGAAGATCCTTGAAAGTTTT+TGG | + | chr8.3:53454683-53454702 | MS.gene59873:intron | 30.0% |
| ! | ATAAACCTTTGGAAAACACT+GGG | - | chr8.3:53453951-53453970 | None:intergenic | 30.0% |
| ! | ATATCGTCAACCAATTTTCA+AGG | - | chr8.3:53455800-53455819 | None:intergenic | 30.0% |
| ! | GTACATTTTATGGACCTTTT+AGG | - | chr8.3:53454247-53454266 | None:intergenic | 30.0% |
| ! | TATAAACCTTTGGAAAACAC+TGG | - | chr8.3:53453952-53453971 | None:intergenic | 30.0% |
| ! | TTCTTCTGGTATTTTCGTTT+AGG | - | chr8.3:53455638-53455657 | None:intergenic | 30.0% |
| ! | TTGTGCTTAATGGAGTTTTA+AGG | + | chr8.3:53454109-53454128 | MS.gene59873:intron | 30.0% |
| ! | TTTCAAGTCACAATAATCTG+GGG | + | chr8.3:53455681-53455700 | MS.gene59873:intron | 30.0% |
| !! | AGGATGAGAAGTACATTTTA+TGG | - | chr8.3:53454257-53454276 | None:intergenic | 30.0% |
| !! | GTTTTCAAGACACAATTATC+TGG | + | chr8.3:53454708-53454727 | MS.gene59873:intron | 30.0% |
| !!! | AGTATTTTTTTGCTGCACAA+AGG | + | chr8.3:53454899-53454918 | MS.gene59873:intron | 30.0% |
| !!! | ATTTTAATTTAGGCTCCAAG+CGG | - | chr8.3:53455146-53455165 | None:intergenic | 30.0% |
| !!! | GTTTTCAAGTCACAATAATC+TGG | + | chr8.3:53455679-53455698 | MS.gene59873:intron | 30.0% |
| !!! | TGATAGTTTTGTGTATGGAT+AGG | + | chr8.3:53454992-53455011 | MS.gene59873:intron | 30.0% |
| AATACCGAATCCAAAACAAC+CGG | - | chr8.3:53456149-53456168 | None:intergenic | 35.0% | |
| CTCGTTCTTAATATCTCTGT+TGG | + | chr8.3:53453785-53453804 | MS.gene59873:CDS | 35.0% | |
| GAAAACTTGATTTAGCATGC+AGG | - | chr8.3:53455361-53455380 | None:intergenic | 35.0% | |
| GATCCTTCAACTGGTATTTA+TGG | + | chr8.3:53456696-53456715 | MS.gene59873:CDS | 35.0% | |
| GTACTTCTCATCCTTCAATT+TGG | + | chr8.3:53454263-53454282 | MS.gene59873:intron | 35.0% | |
| TAAAATTACCTTTGCAGCTC+TGG | - | chr8.3:53453831-53453850 | None:intergenic | 35.0% | |
| TAACACCTTCATATTTCACC+TGG | - | chr8.3:53456839-53456858 | None:intergenic | 35.0% | |
| TAATAGTTGAGGGGTCAAAT+TGG | + | chr8.3:53454452-53454471 | MS.gene59873:intron | 35.0% | |
| TATAATTGAGTCAACAGCAG+GGG | + | chr8.3:53455097-53455116 | MS.gene59873:intron | 35.0% | |
| TATTATGTGCCATGTGAAAC+TGG | + | chr8.3:53456249-53456268 | MS.gene59873:intron | 35.0% | |
| TCTAATACCAAAAGAACGGA+CGG | - | chr8.3:53456011-53456030 | None:intergenic | 35.0% | |
| TGATAGAGAGCGATAGTTTA+GGG | + | chr8.3:53454475-53454494 | MS.gene59873:intron | 35.0% | |
| TTATATTTGAGTCACAGCAG+GGG | + | chr8.3:53455579-53455598 | MS.gene59873:intron | 35.0% | |
| ! | AATATCTCTGTTGGTGAAAG+TGG | + | chr8.3:53453794-53453813 | MS.gene59873:CDS | 35.0% |
| ! | AGTTTTCATGGATCTTCTTC+TGG | - | chr8.3:53455652-53455671 | None:intergenic | 35.0% |
| ! | ATTCAGGAGCATATTGATCT+GGG | + | chr8.3:53456166-53456185 | MS.gene59873:CDS | 35.0% |
| ! | ATTTTCATTTAGGCTCCAAG+CGG | - | chr8.3:53454660-53454679 | None:intergenic | 35.0% |
| ! | CTTGCTGTCAATAAGAAAAG+AGG | - | chr8.3:53455455-53455474 | None:intergenic | 35.0% |
| ! | TAAACCTTTGGAAAACACTG+GGG | - | chr8.3:53453950-53453969 | None:intergenic | 35.0% |
| ! | TATTCAGGAGCATATTGATC+TGG | + | chr8.3:53456165-53456184 | MS.gene59873:CDS | 35.0% |
| ! | TCCTTCAATTTGGTTTCCTA+CGG | + | chr8.3:53454273-53454292 | MS.gene59873:intron | 35.0% |
| !! | GATGGGTGGATTACATTTAA+GGG | + | chr8.3:53454306-53454325 | MS.gene59873:intron | 35.0% |
| !! | TGATGGGTGGATTACATTTA+AGG | + | chr8.3:53454305-53454324 | MS.gene59873:intron | 35.0% |
| !! | TTTAGTGATACCGGTTGTTT+TGG | + | chr8.3:53456136-53456155 | MS.gene59873:CDS | 35.0% |
| !!! | AATGGACTTTTTCGTTGTTC+TGG | + | chr8.3:53456719-53456738 | MS.gene59873:CDS | 35.0% |
| !!! | AGGAGTGATAGTTTTGTGTA+TGG | + | chr8.3:53454987-53455006 | MS.gene59873:intron | 35.0% |
| !!! | TTGTTTTGGATTCGGTATTC+AGG | + | chr8.3:53456150-53456169 | MS.gene59873:CDS | 35.0% |
| ACTCAAAACATGGGCCATTT+AGG | - | chr8.3:53455310-53455329 | None:intergenic | 40.0% | |
| ACTGGTGAGAGTGATAGTTT+AGG | + | chr8.3:53454362-53454381 | MS.gene59873:intron | 40.0% | |
| CCTACGGAGACTAAATTGAT+GGG | + | chr8.3:53454289-53454308 | MS.gene59873:intron | 40.0% | |
| CTGGTGAGAGTGATAGTTTA+GGG | + | chr8.3:53454363-53454382 | MS.gene59873:intron | 40.0% | |
| GATAGAGAGCGATAGTTTAG+GGG | + | chr8.3:53454476-53454495 | MS.gene59873:intron | 40.0% | |
| GTGATAGAGAGCGATAGTTT+AGG | + | chr8.3:53454474-53454493 | MS.gene59873:intron | 40.0% | |
| TCCGTAGGAAACCAAATTGA+AGG | - | chr8.3:53454277-53454296 | None:intergenic | 40.0% | |
| TCCTACGGAGACTAAATTGA+TGG | + | chr8.3:53454288-53454307 | MS.gene59873:intron | 40.0% | |
| TGGTTCCAGGTGAAATATGA+AGG | + | chr8.3:53456831-53456850 | MS.gene59873:CDS | 40.0% | |
| TGTTATCCTCAACAAGTCAC+AGG | + | chr8.3:53456854-53456873 | MS.gene59873:CDS | 40.0% | |
| ! | ATTTTCGTTTAGGCTCCAAG+CGG | - | chr8.3:53455628-53455647 | None:intergenic | 40.0% |
| !! | CATAACAAACTTGGTGGTGA+TGG | - | chr8.3:53456643-53456662 | None:intergenic | 40.0% |
| !!! | GATACCGGTTGTTTTGGATT+CGG | + | chr8.3:53456142-53456161 | MS.gene59873:CDS | 40.0% |
| ACGGAGACTAAATTGATGGG+TGG | + | chr8.3:53454292-53454311 | MS.gene59873:intron | 45.0% | |
| AGAAACTCTCGAACACCATG+AGG | + | chr8.3:53453744-53453763 | MS.gene59873:CDS | 45.0% | |
| ATCCCTAATTGAGCTGCACA+TGG | + | chr8.3:53456438-53456457 | MS.gene59873:intron | 45.0% | |
| CAAGTCACAGGCGATTGTTT+AGG | + | chr8.3:53456866-53456885 | MS.gene59873:CDS | 45.0% | |
| CCCATCAATTTAGTCTCCGT+AGG | - | chr8.3:53454292-53454311 | None:intergenic | 45.0% | |
| CTCAGGTATGATCCTTCAAC+TGG | + | chr8.3:53456687-53456706 | MS.gene59873:intron | 45.0% | |
| CTGAACCTTGATATCCCTCA+TGG | - | chr8.3:53453762-53453781 | None:intergenic | 45.0% | |
| GAAACTCTCGAACACCATGA+GGG | + | chr8.3:53453745-53453764 | MS.gene59873:CDS | 45.0% | |
| GAACACCATGAGGGATATCA+AGG | + | chr8.3:53453754-53453773 | MS.gene59873:CDS | 45.0% | |
| GATCCAACATCGCGTAACAA+AGG | + | chr8.3:53456794-53456813 | MS.gene59873:CDS | 45.0% | |
| TCCCATGTGCAGCTCAATTA+GGG | - | chr8.3:53456443-53456462 | None:intergenic | 45.0% | |
| TCCCTAATTGAGCTGCACAT+GGG | + | chr8.3:53456439-53456458 | MS.gene59873:intron | 45.0% | |
| TGTGACTGTTAGAGGTGACA+AGG | + | chr8.3:53456054-53456073 | MS.gene59873:CDS | 45.0% | |
| TTTCACCTGGAACCACTTCA+TGG | - | chr8.3:53456826-53456845 | None:intergenic | 45.0% | |
| ! | AGATACACCGTCCGTTCTTT+TGG | + | chr8.3:53456001-53456020 | MS.gene59873:CDS | 45.0% |
| ! | CAAACCCCAGTGTTTTCCAA+AGG | + | chr8.3:53453943-53453962 | MS.gene59873:CDS | 45.0% |
| ! | CTTTGGAAAACACTGGGGTT+TGG | - | chr8.3:53453945-53453964 | None:intergenic | 45.0% |
| ! | TGACAAGGCAATGCAGCTTT+TGG | + | chr8.3:53456069-53456088 | MS.gene59873:CDS | 45.0% |
| !! | GCTTGCTATGTGACTGTTAG+AGG | + | chr8.3:53456046-53456065 | MS.gene59873:CDS | 45.0% |
| !! | GCTTTTGGAGAGTGGTTTGA+AGG | + | chr8.3:53456084-53456103 | MS.gene59873:CDS | 45.0% |
| ATGACTACTTGACTGCCGCT+TGG | + | chr8.3:53455128-53455147 | MS.gene59873:intron | 50.0% | |
| CAAAGGACGATGCCATGAAG+TGG | + | chr8.3:53456811-53456830 | MS.gene59873:CDS | 50.0% | |
| CGTCCTTTGTTACGCGATGT+TGG | - | chr8.3:53456800-53456819 | None:intergenic | 50.0% | |
| CTCCCATGTGCAGCTCAATT+AGG | - | chr8.3:53456444-53456463 | None:intergenic | 50.0% | |
| GGAGAGTGGTTTGAAGGTGA+AGG | + | chr8.3:53456090-53456109 | MS.gene59873:CDS | 50.0% | |
| !! | CAATCGCCTGTGACTTGTTG+AGG | - | chr8.3:53456863-53456882 | None:intergenic | 50.0% |
| !! | CAGGTGTTGGAACAACTCAG+TGG | + | chr8.3:53453919-53453938 | MS.gene59873:intron | 50.0% |
| !! | GCAATGCAGCTTTTGGAGAG+TGG | + | chr8.3:53456076-53456095 | MS.gene59873:CDS | 50.0% |
| ATGACTACCTGACTGCCGCT+TGG | + | chr8.3:53454642-53454661 | MS.gene59873:intron | 55.0% | |
| CGATGCCATGAAGTGGTTCC+AGG | + | chr8.3:53456818-53456837 | MS.gene59873:CDS | 55.0% | |
| TCGTCTCACCAGAGCTGCAA+AGG | + | chr8.3:53453820-53453839 | MS.gene59873:CDS | 55.0% | |
| !! | TTCGTTGTTCTGGAGCGTCC+CGG | + | chr8.3:53456729-53456748 | MS.gene59873:CDS | 55.0% |
| ACGACGTCCCACACGGTAAC+CGG | - | chr8.3:53456751-53456770 | None:intergenic | 60.0% | |
| ATGACTGCCTGACTGCCGCT+TGG | + | chr8.3:53455610-53455629 | MS.gene59873:intron | 60.0% | |
| GTCGGTGCAAGGCTCGTGTT+GGG | + | chr8.3:53456772-53456791 | MS.gene59873:CDS | 60.0% | |
| TTAGGCTCCAAGCGGCAGTC+AGG | - | chr8.3:53454652-53454671 | None:intergenic | 60.0% | |
| ACCGACGACGACGTCCCACA+CGG | - | chr8.3:53456758-53456777 | None:intergenic | 65.0% | |
| ACCGTGTGGGACGTCGTCGT+CGG | + | chr8.3:53456754-53456773 | MS.gene59873:CDS | 65.0% | |
| CGACGTCCCACACGGTAACC+GGG | - | chr8.3:53456750-53456769 | None:intergenic | 65.0% | |
| CGTCGGTGCAAGGCTCGTGT+TGG | + | chr8.3:53456771-53456790 | MS.gene59873:CDS | 65.0% | |
| GAGCGTCCCGGTTACCGTGT+GGG | + | chr8.3:53456741-53456760 | MS.gene59873:CDS | 65.0% | |
| GGGACGTCGTCGTCGGTGCA+AGG | + | chr8.3:53456761-53456780 | MS.gene59873:CDS | 70.0% | |
| ! | GGAGCGTCCCGGTTACCGTG+TGG | + | chr8.3:53456740-53456759 | MS.gene59873:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 53453734 | 53456887 | 53453734 | ID=MS.gene59873 |
| chr8.3 | mRNA | 53453734 | 53456887 | 53453734 | ID=MS.gene59873.t1;Parent=MS.gene59873 |
| chr8.3 | exon | 53453734 | 53453841 | 53453734 | ID=MS.gene59873.t1.exon1;Parent=MS.gene59873.t1 |
| chr8.3 | CDS | 53453734 | 53453841 | 53453734 | ID=cds.MS.gene59873.t1;Parent=MS.gene59873.t1 |
| chr8.3 | exon | 53453922 | 53453964 | 53453922 | ID=MS.gene59873.t1.exon2;Parent=MS.gene59873.t1 |
| chr8.3 | CDS | 53453922 | 53453964 | 53453922 | ID=cds.MS.gene59873.t1;Parent=MS.gene59873.t1 |
| chr8.3 | exon | 53455999 | 53456194 | 53455999 | ID=MS.gene59873.t1.exon3;Parent=MS.gene59873.t1 |
| chr8.3 | CDS | 53455999 | 53456194 | 53455999 | ID=cds.MS.gene59873.t1;Parent=MS.gene59873.t1 |
| chr8.3 | exon | 53456692 | 53456887 | 53456692 | ID=MS.gene59873.t1.exon4;Parent=MS.gene59873.t1 |
| chr8.3 | CDS | 53456692 | 53456887 | 53456692 | ID=cds.MS.gene59873.t1;Parent=MS.gene59873.t1 |
| Gene Sequence |
| Protein sequence |
