Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020575.t1 | RHN48604.1 | 98 | 296 | 6 | 0 | 1 | 296 | 73 | 368 | 1.50E-173 | 618.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020575.t1 | Q9LF92 | 69.6 | 299 | 87 | 3 | 1 | 296 | 1 | 298 | 3.8e-125 | 449.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020575.t1 | A0A072U2Z8 | 98.0 | 296 | 6 | 0 | 1 | 296 | 1 | 296 | 1.1e-173 | 618.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015544 | MS.gene020575 | PPI |
| MS.gene22617 | MS.gene020575 | PPI |
| MS.gene020575 | MS.gene033388 | PPI |
| MS.gene020575 | MS.gene011426 | PPI |
| MS.gene020575 | MS.gene72988 | PPI |
| MS.gene020575 | MS.gene20125 | PPI |
| MS.gene020575 | MS.gene015546 | PPI |
| MS.gene020575 | MS.gene072814 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020575.t1 | MTR_7g103380 | 97.973 | 296 | 6 | 0 | 1 | 296 | 1 | 296 | 0.0 | 606 |
| MS.gene020575.t1 | MTR_5g010800 | 54.983 | 291 | 116 | 4 | 1 | 290 | 1 | 277 | 2.88e-112 | 326 |
| MS.gene020575.t1 | MTR_4g102770 | 57.509 | 273 | 104 | 2 | 19 | 290 | 19 | 280 | 1.19e-109 | 319 |
| MS.gene020575.t1 | MTR_1g101390 | 53.020 | 298 | 120 | 2 | 1 | 289 | 1 | 287 | 2.86e-109 | 318 |
| MS.gene020575.t1 | MTR_0002s0020 | 54.110 | 292 | 115 | 3 | 1 | 284 | 1 | 281 | 4.98e-108 | 315 |
| MS.gene020575.t1 | MTR_0113s0040 | 47.603 | 292 | 139 | 2 | 1 | 289 | 1 | 281 | 2.87e-98 | 290 |
| MS.gene020575.t1 | MTR_7g112560 | 31.250 | 272 | 158 | 8 | 22 | 283 | 4 | 256 | 1.86e-33 | 123 |
| MS.gene020575.t1 | MTR_4g023570 | 30.712 | 267 | 154 | 7 | 22 | 287 | 4 | 240 | 3.39e-32 | 119 |
| MS.gene020575.t1 | MTR_1g079370 | 26.354 | 277 | 176 | 6 | 19 | 283 | 4 | 264 | 2.62e-30 | 115 |
| MS.gene020575.t1 | MTR_1g100597 | 26.241 | 282 | 173 | 6 | 21 | 283 | 6 | 271 | 7.57e-29 | 111 |
| MS.gene020575.t1 | MTR_1g079260 | 26.481 | 287 | 176 | 6 | 18 | 285 | 3 | 273 | 1.60e-28 | 110 |
| MS.gene020575.t1 | MTR_1g083580 | 25.862 | 290 | 175 | 8 | 18 | 283 | 7 | 280 | 3.65e-27 | 107 |
| MS.gene020575.t1 | MTR_1g079180 | 25.818 | 275 | 176 | 7 | 21 | 283 | 6 | 264 | 5.08e-27 | 106 |
| MS.gene020575.t1 | MTR_1g079200 | 26.715 | 277 | 170 | 11 | 21 | 283 | 6 | 263 | 2.33e-26 | 104 |
| MS.gene020575.t1 | MTR_1g079460 | 24.727 | 275 | 184 | 6 | 21 | 285 | 6 | 267 | 4.28e-26 | 104 |
| MS.gene020575.t1 | MTR_1g079140 | 37.762 | 143 | 86 | 2 | 21 | 160 | 15 | 157 | 9.76e-26 | 104 |
| MS.gene020575.t1 | MTR_1g079380 | 26.715 | 277 | 175 | 7 | 19 | 283 | 4 | 264 | 1.98e-25 | 103 |
| MS.gene020575.t1 | MTR_7g112550 | 24.742 | 291 | 180 | 7 | 18 | 283 | 6 | 282 | 8.77e-25 | 101 |
| MS.gene020575.t1 | MTR_1g079230 | 24.823 | 282 | 178 | 6 | 21 | 283 | 6 | 272 | 6.81e-24 | 98.6 |
| MS.gene020575.t1 | MTR_1g100613 | 26.971 | 241 | 140 | 5 | 35 | 253 | 5 | 231 | 1.64e-23 | 96.7 |
| MS.gene020575.t1 | MTR_3g452600 | 25.182 | 274 | 179 | 5 | 19 | 283 | 10 | 266 | 4.78e-22 | 93.2 |
| MS.gene020575.t1 | MTR_1g079850 | 24.490 | 294 | 176 | 8 | 21 | 285 | 6 | 282 | 4.77e-21 | 90.9 |
| MS.gene020575.t1 | MTR_1g079400 | 32.414 | 145 | 95 | 2 | 22 | 163 | 15 | 159 | 4.41e-20 | 88.2 |
| MS.gene020575.t1 | MTR_1g079410 | 31.757 | 148 | 92 | 3 | 22 | 163 | 11 | 155 | 1.89e-19 | 86.3 |
| MS.gene020575.t1 | MTR_3g450990 | 24.286 | 280 | 190 | 7 | 19 | 283 | 10 | 282 | 2.13e-17 | 80.9 |
| MS.gene020575.t1 | MTR_1g079250 | 25.965 | 285 | 180 | 8 | 21 | 285 | 6 | 279 | 4.45e-16 | 77.4 |
| MS.gene020575.t1 | MTR_7g096300 | 24.830 | 294 | 179 | 7 | 21 | 290 | 6 | 281 | 4.65e-15 | 75.9 |
| MS.gene020575.t1 | MTR_2g079100 | 23.466 | 277 | 176 | 8 | 18 | 281 | 8 | 261 | 1.35e-14 | 72.8 |
| MS.gene020575.t1 | MTR_1g079350 | 24.514 | 257 | 158 | 8 | 18 | 253 | 3 | 244 | 8.40e-14 | 70.5 |
| MS.gene020575.t1 | MTR_3g006850 | 22.222 | 216 | 142 | 5 | 21 | 223 | 19 | 221 | 1.25e-12 | 67.4 |
| MS.gene020575.t1 | MTR_1g078470 | 26.667 | 180 | 101 | 6 | 115 | 283 | 24 | 183 | 1.02e-11 | 63.2 |
| MS.gene020575.t1 | MTR_1g079350 | 30.882 | 136 | 84 | 5 | 18 | 146 | 3 | 135 | 2.57e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020575.t1 | AT3G53000 | 69.565 | 299 | 87 | 3 | 1 | 296 | 1 | 298 | 1.51e-155 | 436 |
| MS.gene020575.t1 | AT3G61060 | 56.554 | 267 | 106 | 1 | 19 | 285 | 25 | 281 | 3.89e-110 | 321 |
| MS.gene020575.t1 | AT3G61060 | 56.716 | 268 | 105 | 2 | 19 | 285 | 25 | 282 | 5.77e-109 | 318 |
| MS.gene020575.t1 | AT1G12710 | 52.805 | 303 | 113 | 5 | 1 | 289 | 1 | 287 | 8.37e-107 | 312 |
| MS.gene020575.t1 | AT1G12710 | 46.377 | 345 | 113 | 6 | 1 | 289 | 1 | 329 | 2.44e-98 | 292 |
| MS.gene020575.t1 | AT1G63090 | 51.916 | 287 | 125 | 3 | 4 | 289 | 11 | 285 | 4.92e-98 | 290 |
| MS.gene020575.t1 | AT5G52120 | 45.791 | 297 | 135 | 3 | 8 | 289 | 1 | 286 | 1.18e-90 | 271 |
| MS.gene020575.t1 | AT2G02360 | 26.667 | 270 | 176 | 7 | 23 | 286 | 18 | 271 | 1.04e-27 | 108 |
| MS.gene020575.t1 | AT2G02340 | 27.425 | 299 | 178 | 10 | 9 | 287 | 26 | 305 | 4.64e-27 | 107 |
| MS.gene020575.t1 | AT2G02240 | 26.599 | 297 | 180 | 9 | 5 | 285 | 44 | 318 | 2.30e-26 | 106 |
| MS.gene020575.t1 | AT2G02230 | 36.424 | 151 | 88 | 3 | 14 | 162 | 27 | 171 | 7.52e-26 | 105 |
| MS.gene020575.t1 | AT1G09155 | 26.510 | 298 | 178 | 10 | 22 | 291 | 3 | 287 | 7.33e-25 | 101 |
| MS.gene020575.t1 | AT1G80110 | 23.810 | 273 | 182 | 5 | 19 | 283 | 1 | 255 | 2.06e-23 | 96.7 |
| MS.gene020575.t1 | AT2G02250 | 34.395 | 157 | 96 | 4 | 10 | 163 | 36 | 188 | 4.27e-23 | 97.1 |
| MS.gene020575.t1 | AT5G24560 | 32.143 | 140 | 91 | 1 | 21 | 160 | 5 | 140 | 3.04e-22 | 92.0 |
| MS.gene020575.t1 | AT2G02350 | 30.464 | 151 | 100 | 3 | 10 | 159 | 15 | 161 | 5.12e-22 | 94.0 |
| MS.gene020575.t1 | AT2G02310 | 25.714 | 280 | 176 | 9 | 21 | 287 | 47 | 307 | 4.47e-21 | 91.3 |
| MS.gene020575.t1 | AT1G56240 | 24.830 | 294 | 180 | 7 | 22 | 287 | 4 | 284 | 2.71e-20 | 89.0 |
| MS.gene020575.t1 | AT1G56250 | 24.828 | 290 | 177 | 7 | 22 | 283 | 4 | 280 | 9.72e-20 | 87.4 |
| MS.gene020575.t1 | AT2G02320 | 24.579 | 297 | 188 | 10 | 4 | 285 | 25 | 300 | 5.87e-19 | 85.5 |
| MS.gene020575.t1 | AT2G02300 | 33.117 | 154 | 96 | 4 | 11 | 163 | 28 | 175 | 4.46e-17 | 80.1 |
| MS.gene020575.t1 | AT4G19840 | 30.603 | 232 | 124 | 11 | 62 | 285 | 44 | 246 | 1.21e-12 | 66.6 |
Find 75 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGCGAAAATATCTTTCT+TGG | 0.244190 | 7.2:-9406915 | None:intergenic |
| GCGAAAGGTTTGTCTATTAC+TGG | 0.248170 | 7.2:+9407111 | MS.gene020575:CDS |
| CTGCTTCCGCTGATTCCGTT+TGG | 0.279164 | 7.2:+9406819 | MS.gene020575:CDS |
| TGCTTCCGCTGATTCCGTTT+GGG | 0.281862 | 7.2:+9406820 | MS.gene020575:CDS |
| CTAACTATCAACATCTTCTA+AGG | 0.282361 | 7.2:+9406858 | MS.gene020575:CDS |
| TTCCGACAGCGTAGTTCTTC+GGG | 0.292375 | 7.2:-9406887 | None:intergenic |
| TAGCATATTTGCAGCAAATA+TGG | 0.292809 | 7.2:+9408910 | MS.gene020575:CDS |
| TTGTGGCTTGATAGGGTTAC+TGG | 0.305604 | 7.2:+9407066 | MS.gene020575:CDS |
| ATAATTATACTCTCTCCTTT+AGG | 0.320102 | 7.2:+9408976 | MS.gene020575:CDS |
| GGTGCTTCGTTGTCGAATCT+TGG | 0.327372 | 7.2:+9406668 | MS.gene020575:CDS |
| ATTCCGACAGCGTAGTTCTT+CGG | 0.334823 | 7.2:-9406888 | None:intergenic |
| TTTGATCCCAACCATGGGTT+TGG | 0.336939 | 7.2:-9409052 | None:intergenic |
| TACGCGCCGACCGAGTCTTT+TGG | 0.340105 | 7.2:-9409018 | None:intergenic |
| TAGGGTTTGCATGTCAATTT+CGG | 0.355678 | 7.2:+9407089 | MS.gene020575:CDS |
| GCAATCATAAGCGTGGATAT+TGG | 0.361605 | 7.2:+9409165 | MS.gene020575:CDS |
| CAATCATAAGCGTGGATATT+GGG | 0.364455 | 7.2:+9409166 | MS.gene020575:CDS |
| TGCAGCAATTGTGGCTTGAT+AGG | 0.373892 | 7.2:+9407058 | MS.gene020575:intron |
| ACCGTTTGATGATGGTAATA+AGG | 0.383826 | 7.2:+9406952 | MS.gene020575:CDS |
| TGTACAGTCAATCTGTTTCA+TGG | 0.389000 | 7.2:-9409252 | None:intergenic |
| GAATTGATGATCGGAGATAC+TGG | 0.406343 | 7.2:+9407133 | MS.gene020575:CDS |
| AGAAGATGTTGATAGTTAGA+AGG | 0.406652 | 7.2:-9406854 | None:intergenic |
| TCAGGGATGTCGCCGAGACT+TGG | 0.421026 | 7.2:-9406713 | None:intergenic |
| GGGTTCCTACTGAAGAATCT+AGG | 0.427818 | 7.2:+9407160 | MS.gene020575:CDS |
| GCTTGATAGGGTTACTGGTA+GGG | 0.443412 | 7.2:+9407071 | MS.gene020575:CDS |
| GGCTTGATAGGGTTACTGGT+AGG | 0.446268 | 7.2:+9407070 | MS.gene020575:CDS |
| GTATAATTATCAGCAGGAAA+TGG | 0.451382 | 7.2:-9408963 | None:intergenic |
| GCGAGCTAAGTTACAAATCT+CGG | 0.453621 | 7.2:-9406774 | None:intergenic |
| GTAGGTGAGTTTATTGTGAC+TGG | 0.455214 | 7.2:+9409200 | MS.gene020575:CDS |
| GCTGTCAACTTCAGATGGTC+AGG | 0.460205 | 7.2:+9409091 | MS.gene020575:CDS |
| ATGATCGGAGATACTGGACT+TGG | 0.466267 | 7.2:+9407139 | MS.gene020575:CDS |
| CTCTCCTTTAGGCTTCACCT+TGG | 0.478658 | 7.2:+9408987 | MS.gene020575:CDS |
| AGCATCATCTGAGTGCTGCT+TGG | 0.485935 | 7.2:+9409115 | MS.gene020575:CDS |
| GCAGCAATTGTGGCTTGATA+GGG | 0.487718 | 7.2:+9407059 | MS.gene020575:intron |
| GTTGACAGCTTAAATATGAC+TGG | 0.492659 | 7.2:-9409077 | None:intergenic |
| TTACCATCATCAAACGGTAA+AGG | 0.493520 | 7.2:-9406947 | None:intergenic |
| TGGAGCGATGGTTGAACCGT+TGG | 0.500130 | 7.2:-9406693 | None:intergenic |
| TGCATGTCAATTTCGGCGAA+AGG | 0.505228 | 7.2:+9407096 | MS.gene020575:CDS |
| AAACCTTTACCGTTTGATGA+TGG | 0.507236 | 7.2:+9406944 | MS.gene020575:CDS |
| CTATGACCAAACCCATGGTT+GGG | 0.510948 | 7.2:+9409046 | MS.gene020575:CDS |
| CGAGCTAAGTTACAAATCTC+GGG | 0.515282 | 7.2:-9406773 | None:intergenic |
| TCAACCATCGCTCCAAGTCT+CGG | 0.520611 | 7.2:+9406701 | MS.gene020575:CDS |
| ATTGACTGTACACATTCAAA+AGG | 0.523702 | 7.2:+9409263 | MS.gene020575:CDS |
| TTGAGAGACCGCAAGGGAGG+CGG | 0.525474 | 7.2:+9409326 | MS.gene020575:CDS |
| ATATGGTGGTTTGAAGTGGA+TGG | 0.529067 | 7.2:+9408927 | MS.gene020575:CDS |
| TATGGTGGTTTGAAGTGGAT+GGG | 0.530496 | 7.2:+9408928 | MS.gene020575:CDS |
| GAGAGAGTATAATTATCAGC+AGG | 0.530526 | 7.2:-9408969 | None:intergenic |
| TCGTCCAAGGTGAAGCCTAA+AGG | 0.536499 | 7.2:-9408991 | None:intergenic |
| TTGCGGTCTCTCAACTCGCT+AGG | 0.541840 | 7.2:-9409317 | None:intergenic |
| TATTGGGTAGATTACAAGGT+AGG | 0.543853 | 7.2:+9409182 | MS.gene020575:CDS |
| ACCTTATTACCATCATCAAA+CGG | 0.548291 | 7.2:-9406953 | None:intergenic |
| TTGTCGAATCTTGGATCCAA+CGG | 0.552308 | 7.2:+9406677 | MS.gene020575:CDS |
| GCTATGACCAAACCCATGGT+TGG | 0.552394 | 7.2:+9409045 | MS.gene020575:CDS |
| TTTAAGCTGTCAACTTCAGA+TGG | 0.554061 | 7.2:+9409086 | MS.gene020575:CDS |
| CTATTACTGGAATTGATGAT+CGG | 0.557562 | 7.2:+9407124 | MS.gene020575:CDS |
| TGGATATTGGGTAGATTACA+AGG | 0.571903 | 7.2:+9409178 | MS.gene020575:CDS |
| CATATTTGCAGCAAATATGG+TGG | 0.572697 | 7.2:+9408913 | MS.gene020575:CDS |
| GCAAATATGGTGGTTTGAAG+TGG | 0.575682 | 7.2:+9408923 | MS.gene020575:CDS |
| TAGCGAGTTGAGAGACCGCA+AGG | 0.584165 | 7.2:+9409319 | MS.gene020575:CDS |
| ATGGTGGTTTGAAGTGGATG+GGG | 0.588532 | 7.2:+9408929 | MS.gene020575:CDS |
| GTCGCCGAGACTTGGAGCGA+TGG | 0.591097 | 7.2:-9406705 | None:intergenic |
| TGTAACCTAGATTCTTCAGT+AGG | 0.600640 | 7.2:-9407165 | None:intergenic |
| AGGTAACTTAGATTCCCAAA+CGG | 0.601089 | 7.2:-9406834 | None:intergenic |
| ACTGTCCACGATGATACATA+CGG | 0.613314 | 7.2:+9409143 | MS.gene020575:CDS |
| GAGTTGAGAGACCGCAAGGG+AGG | 0.616169 | 7.2:+9409323 | MS.gene020575:CDS |
| TGCAGCTATGACCAAACCCA+TGG | 0.624730 | 7.2:+9409041 | MS.gene020575:CDS |
| GTGGTTTGAAGTGGATGGGG+AGG | 0.629340 | 7.2:+9408932 | MS.gene020575:CDS |
| TGCCCGAAGAACTACGCTGT+CGG | 0.632314 | 7.2:+9406885 | MS.gene020575:CDS |
| GACTGTACACATTCAAAAGG+TGG | 0.636157 | 7.2:+9409266 | MS.gene020575:CDS |
| TGATCGGAGATACTGGACTT+GGG | 0.644140 | 7.2:+9407140 | MS.gene020575:CDS |
| AGCGAGTTGAGAGACCGCAA+GGG | 0.651355 | 7.2:+9409320 | MS.gene020575:CDS |
| AGATTCCCAAACGGAATCAG+CGG | 0.656920 | 7.2:-9406825 | None:intergenic |
| ACATACGGCAATCATAAGCG+TGG | 0.659891 | 7.2:+9409158 | MS.gene020575:CDS |
| GATTGCCGTATGTATCATCG+TGG | 0.696598 | 7.2:-9409148 | None:intergenic |
| GCTAAGTTACAAATCTCGGG+AGG | 0.700399 | 7.2:-9406770 | None:intergenic |
| TAAATACAGAATCTACACAA+AGG | 0.700993 | 7.2:-9409289 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAGATGGAAATATTAT+TGG | + | chr7.2:9407438-9407457 | MS.gene020575:intron | 15.0% |
| !! | TGTAATTAAAAACAAGTATT+GGG | - | chr7.2:9407287-9407306 | None:intergenic | 15.0% |
| !! | TTGTAATTAAAAACAAGTAT+TGG | - | chr7.2:9407288-9407307 | None:intergenic | 15.0% |
| !! | TTTCATAAGTTAAATTAAGA+TGG | + | chr7.2:9407426-9407445 | MS.gene020575:intron | 15.0% |
| !!! | AAAAAATATGTTGACTTTTA+AGG | + | chr7.2:9407863-9407882 | MS.gene020575:intron | 15.0% |
| !!! | TTGTAAACTTAATTTTCAAT+GGG | + | chr7.2:9408061-9408080 | MS.gene020575:intron | 15.0% |
| !! | AATTCAATTGAACTGTTAAT+TGG | + | chr7.2:9408149-9408168 | MS.gene020575:intron | 20.0% |
| !! | ATTACAAGACTTGAAATATT+TGG | - | chr7.2:9407579-9407598 | None:intergenic | 20.0% |
| !! | ATTCAATTGAACTGTTAATT+GGG | + | chr7.2:9408150-9408169 | MS.gene020575:intron | 20.0% |
| !! | GTTTATTGTTTCAAATCATT+CGG | + | chr7.2:9407004-9407023 | MS.gene020575:intron | 20.0% |
| !! | TTAATAAAACATCAACATGT+AGG | + | chr7.2:9408663-9408682 | MS.gene020575:intron | 20.0% |
| !! | TTTCTATTATCATTCATTTC+AGG | + | chr7.2:9408877-9408896 | MS.gene020575:intron | 20.0% |
| !!! | GTTGTAAACTTAATTTTCAA+TGG | + | chr7.2:9408060-9408079 | MS.gene020575:intron | 20.0% |
| !!! | TAATTTTTTAGAGCATGTTT+GGG | + | chr7.2:9407311-9407330 | MS.gene020575:intron | 20.0% |
| !!! | TTAAATTCTTTTAATCCAAG+AGG | + | chr7.2:9407736-9407755 | MS.gene020575:intron | 20.0% |
| !!! | TTTTTATTGATGATGGAATT+AGG | + | chr7.2:9407031-9407050 | MS.gene020575:intron | 20.0% |
| ! | ACTCTTGAATATAGTCTTTA+TGG | + | chr7.2:9407786-9407805 | MS.gene020575:intron | 25.0% |
| ! | ACTTGAAATATTTGGATCTT+AGG | - | chr7.2:9407571-9407590 | None:intergenic | 25.0% |
| ! | AGTTTATTTACAGTTTAGCT+AGG | - | chr7.2:9407535-9407554 | None:intergenic | 25.0% |
| ! | ATAATTATACTCTCTCCTTT+AGG | + | chr7.2:9408976-9408995 | MS.gene020575:CDS | 25.0% |
| ! | GATAGACAAATTATTGTAAG+AGG | + | chr7.2:9408534-9408553 | MS.gene020575:intron | 25.0% |
| ! | TAAATACAGAATCTACACAA+AGG | - | chr7.2:9409292-9409311 | None:intergenic | 25.0% |
| ! | TTGAATATAGTCTTTATGGT+TGG | + | chr7.2:9407790-9407809 | MS.gene020575:intron | 25.0% |
| !!! | ATTGGAATAGTTTTACGAAT+GGG | - | chr7.2:9408744-9408763 | None:intergenic | 25.0% |
| !!! | CGGTTTATTTTTATTGATGA+TGG | + | chr7.2:9407024-9407043 | MS.gene020575:intron | 25.0% |
| !!! | CTTTTTCTCACATTTAAAGT+TGG | + | chr7.2:9407246-9407265 | MS.gene020575:intron | 25.0% |
| !!! | GTAATTTTTTAGAGCATGTT+TGG | + | chr7.2:9407310-9407329 | MS.gene020575:intron | 25.0% |
| !!! | TGCTTGTAATTTTGAGAAAA+GGG | + | chr7.2:9407690-9407709 | MS.gene020575:intron | 25.0% |
| !!! | TTGCTTGTAATTTTGAGAAA+AGG | + | chr7.2:9407689-9407708 | MS.gene020575:intron | 25.0% |
| AAAACATCAACATGTAGGTT+TGG | + | chr7.2:9408668-9408687 | MS.gene020575:intron | 30.0% | |
| AACAGCGAAAATATCTTTCT+TGG | - | chr7.2:9406918-9406937 | None:intergenic | 30.0% | |
| ACAACAAAACACATAGAATC+AGG | - | chr7.2:9408015-9408034 | None:intergenic | 30.0% | |
| ACCTTATTACCATCATCAAA+CGG | - | chr7.2:9406956-9406975 | None:intergenic | 30.0% | |
| ATAGCTTATAAGCAGTAGAT+TGG | - | chr7.2:9408762-9408781 | None:intergenic | 30.0% | |
| ATTAACCTGTGTTACACTAT+AGG | - | chr7.2:9408581-9408600 | None:intergenic | 30.0% | |
| ATTATAATTGAGCCTCCTAA+AGG | + | chr7.2:9408327-9408346 | MS.gene020575:intron | 30.0% | |
| ATTGACTGTACACATTCAAA+AGG | + | chr7.2:9409263-9409282 | MS.gene020575:CDS | 30.0% | |
| CAACAAAACACATAGAATCA+GGG | - | chr7.2:9408014-9408033 | None:intergenic | 30.0% | |
| CAACTCTTCTTGAAATTGAA+TGG | - | chr7.2:9407896-9407915 | None:intergenic | 30.0% | |
| CTAACTATCAACATCTTCTA+AGG | + | chr7.2:9406858-9406877 | MS.gene020575:CDS | 30.0% | |
| GGGAAATTGGATTATTACTT+TGG | + | chr7.2:9407711-9407730 | MS.gene020575:intron | 30.0% | |
| GTATAATTATCAGCAGGAAA+TGG | - | chr7.2:9408966-9408985 | None:intergenic | 30.0% | |
| TAGCATATTTGCAGCAAATA+TGG | + | chr7.2:9408910-9408929 | MS.gene020575:CDS | 30.0% | |
| ! | AACATCTTGTTATCAATGCT+AGG | + | chr7.2:9408393-9408412 | MS.gene020575:intron | 30.0% |
| ! | ACATCTTGTTATCAATGCTA+GGG | + | chr7.2:9408394-9408413 | MS.gene020575:intron | 30.0% |
| ! | CTATTACTGGAATTGATGAT+CGG | + | chr7.2:9407124-9407143 | MS.gene020575:CDS | 30.0% |
| ! | CTTAATAGTGCTACTATTAC+TGG | - | chr7.2:9408797-9408816 | None:intergenic | 30.0% |
| ! | TATTTCTCTGGTTCAAACAT+AGG | + | chr7.2:9407937-9407956 | MS.gene020575:intron | 30.0% |
| !! | AATAGTTTTACGAATGGGAA+TGG | - | chr7.2:9408739-9408758 | None:intergenic | 30.0% |
| !! | AGAAGATGTTGATAGTTAGA+AGG | - | chr7.2:9406857-9406876 | None:intergenic | 30.0% |
| !! | ATAGTTTTACGAATGGGAAT+GGG | - | chr7.2:9408738-9408757 | None:intergenic | 30.0% |
| !! | ATTTTGAGAAAAGGGGAAAT+TGG | + | chr7.2:9407698-9407717 | MS.gene020575:intron | 30.0% |
| !! | GAGAATCTAACTTTTGTTGT+AGG | - | chr7.2:9409233-9409252 | None:intergenic | 30.0% |
| !! | GATTGGAATAGTTTTACGAA+TGG | - | chr7.2:9408745-9408764 | None:intergenic | 30.0% |
| !! | GCTTGTAATTTTGAGAAAAG+GGG | + | chr7.2:9407691-9407710 | MS.gene020575:intron | 30.0% |
| !! | TTGATGATGGTAATAAGGTA+GGG | + | chr7.2:9406957-9406976 | MS.gene020575:intron | 30.0% |
| !! | TTTGATGATGGTAATAAGGT+AGG | + | chr7.2:9406956-9406975 | MS.gene020575:intron | 30.0% |
| AAACCTTTACCGTTTGATGA+TGG | + | chr7.2:9406944-9406963 | MS.gene020575:CDS | 35.0% | |
| AAACTGCATCTATAGTGAGA+AGG | - | chr7.2:9408283-9408302 | None:intergenic | 35.0% | |
| AGGTAACTTAGATTCCCAAA+CGG | - | chr7.2:9406837-9406856 | None:intergenic | 35.0% | |
| CAATCATAAGCGTGGATATT+GGG | + | chr7.2:9409166-9409185 | MS.gene020575:CDS | 35.0% | |
| CAATGGGAATGTTAAATTGC+TGG | + | chr7.2:9408077-9408096 | MS.gene020575:intron | 35.0% | |
| CAGGTTAATCTCACAGAAAA+AGG | + | chr7.2:9408627-9408646 | MS.gene020575:intron | 35.0% | |
| CATATTTGCAGCAAATATGG+TGG | + | chr7.2:9408913-9408932 | MS.gene020575:CDS | 35.0% | |
| CTGCTCTACGTAGTTTATTA+TGG | + | chr7.2:9408691-9408710 | MS.gene020575:intron | 35.0% | |
| GGAATTGTTGAGACTATAAC+AGG | - | chr7.2:9407636-9407655 | None:intergenic | 35.0% | |
| GGCAGTGTAGTTTCTAATAT+TGG | - | chr7.2:9408262-9408281 | None:intergenic | 35.0% | |
| GTTGACAGCTTAAATATGAC+TGG | - | chr7.2:9409080-9409099 | None:intergenic | 35.0% | |
| TAGGGTTTGCATGTCAATTT+CGG | + | chr7.2:9407089-9407108 | MS.gene020575:CDS | 35.0% | |
| TAGTCTCAACAATTCCTGAT+TGG | + | chr7.2:9407640-9407659 | MS.gene020575:intron | 35.0% | |
| TATTGGGTAGATTACAAGGT+AGG | + | chr7.2:9409182-9409201 | MS.gene020575:CDS | 35.0% | |
| TGGATATTGGGTAGATTACA+AGG | + | chr7.2:9409178-9409197 | MS.gene020575:CDS | 35.0% | |
| TGTAACCTAGATTCTTCAGT+AGG | - | chr7.2:9407168-9407187 | None:intergenic | 35.0% | |
| TGTACAGTCAATCTGTTTCA+TGG | - | chr7.2:9409255-9409274 | None:intergenic | 35.0% | |
| TTACCATCATCAAACGGTAA+AGG | - | chr7.2:9406950-9406969 | None:intergenic | 35.0% | |
| TTTAAGCTGTCAACTTCAGA+TGG | + | chr7.2:9409086-9409105 | MS.gene020575:CDS | 35.0% | |
| TTTAATCCAAGAGGATTGCT+AGG | + | chr7.2:9407745-9407764 | MS.gene020575:intron | 35.0% | |
| TTTGGATCTTAGGATGCATT+AGG | - | chr7.2:9407561-9407580 | None:intergenic | 35.0% | |
| ! | GAGAGAGTATAATTATCAGC+AGG | - | chr7.2:9408972-9408991 | None:intergenic | 35.0% |
| ! | TTAGGTTTTTGCAGCAATTG+TGG | + | chr7.2:9407049-9407068 | MS.gene020575:intron | 35.0% |
| !! | ACCGTTTGATGATGGTAATA+AGG | + | chr7.2:9406952-9406971 | MS.gene020575:CDS | 35.0% |
| ACAAACCAAGCAAACCAATC+AGG | - | chr7.2:9407657-9407676 | None:intergenic | 40.0% | |
| ACTGTCCACGATGATACATA+CGG | + | chr7.2:9409143-9409162 | MS.gene020575:CDS | 40.0% | |
| CGAAGTTTAGCAGAACTTGT+TGG | + | chr7.2:9408489-9408508 | MS.gene020575:intron | 40.0% | |
| CGAGCTAAGTTACAAATCTC+GGG | - | chr7.2:9406776-9406795 | None:intergenic | 40.0% | |
| GACTGTACACATTCAAAAGG+TGG | + | chr7.2:9409266-9409285 | MS.gene020575:CDS | 40.0% | |
| GCAAATATGGTGGTTTGAAG+TGG | + | chr7.2:9408923-9408942 | MS.gene020575:CDS | 40.0% | |
| GCAATCATAAGCGTGGATAT+TGG | + | chr7.2:9409165-9409184 | MS.gene020575:CDS | 40.0% | |
| GCGAAAGGTTTGTCTATTAC+TGG | + | chr7.2:9407111-9407130 | MS.gene020575:CDS | 40.0% | |
| GCGAGCTAAGTTACAAATCT+CGG | - | chr7.2:9406777-9406796 | None:intergenic | 40.0% | |
| GGAGGCTCAATTATAATTGC+CGG | - | chr7.2:9408324-9408343 | None:intergenic | 40.0% | |
| GTAGGTGAGTTTATTGTGAC+TGG | + | chr7.2:9409200-9409219 | MS.gene020575:CDS | 40.0% | |
| TGCAACATTTCACTGATGAC+CGG | + | chr7.2:9408302-9408321 | MS.gene020575:intron | 40.0% | |
| TGGGAATGGGAATGGAAATT+TGG | - | chr7.2:9408725-9408744 | None:intergenic | 40.0% | |
| TTGTCGAATCTTGGATCCAA+CGG | + | chr7.2:9406677-9406696 | MS.gene020575:CDS | 40.0% | |
| TTTACGAATGGGAATGGGAA+TGG | - | chr7.2:9408733-9408752 | None:intergenic | 40.0% | |
| ! | ATATGGTGGTTTGAAGTGGA+TGG | + | chr7.2:9408927-9408946 | MS.gene020575:CDS | 40.0% |
| ! | GAATTGATGATCGGAGATAC+TGG | + | chr7.2:9407133-9407152 | MS.gene020575:CDS | 40.0% |
| ! | GGACGATTTTCCAAAAGACT+CGG | + | chr7.2:9409008-9409027 | MS.gene020575:CDS | 40.0% |
| ! | TATGGTGGTTTGAAGTGGAT+GGG | + | chr7.2:9408928-9408947 | MS.gene020575:CDS | 40.0% |
| ! | TTTAGAGCATGTTTGGGCTT+TGG | + | chr7.2:9407317-9407336 | MS.gene020575:intron | 40.0% |
| !! | CAATTCCTGATTGGTTTGCT+TGG | + | chr7.2:9407649-9407668 | MS.gene020575:intron | 40.0% |
| !! | GATTTTCCAAAAGACTCGGT+CGG | + | chr7.2:9409012-9409031 | MS.gene020575:CDS | 40.0% |
| !! | GCGACTTGCTAATATTTCTC+TGG | + | chr7.2:9407925-9407944 | MS.gene020575:intron | 40.0% |
| !! | GTCTTTTGGAAAATCGTCCA+AGG | - | chr7.2:9409007-9409026 | None:intergenic | 40.0% |
| !!! | TTTGCGACTTTTGGTGTCAT+AGG | + | chr7.2:9408358-9408377 | MS.gene020575:intron | 40.0% |
| ACATACGGCAATCATAAGCG+TGG | + | chr7.2:9409158-9409177 | MS.gene020575:CDS | 45.0% | |
| AGATTCCCAAACGGAATCAG+CGG | - | chr7.2:9406828-9406847 | None:intergenic | 45.0% | |
| ATGATCGGAGATACTGGACT+TGG | + | chr7.2:9407139-9407158 | MS.gene020575:CDS | 45.0% | |
| ATTCCGACAGCGTAGTTCTT+CGG | - | chr7.2:9406891-9406910 | None:intergenic | 45.0% | |
| CTATGACCAAACCCATGGTT+GGG | + | chr7.2:9409046-9409065 | MS.gene020575:CDS | 45.0% | |
| GATTGCCGTATGTATCATCG+TGG | - | chr7.2:9409151-9409170 | None:intergenic | 45.0% | |
| GCAGCAATTGTGGCTTGATA+GGG | + | chr7.2:9407059-9407078 | MS.gene020575:intron | 45.0% | |
| GCTAAGTTACAAATCTCGGG+AGG | - | chr7.2:9406773-9406792 | None:intergenic | 45.0% | |
| GCTTGATAGGGTTACTGGTA+GGG | + | chr7.2:9407071-9407090 | MS.gene020575:CDS | 45.0% | |
| GGGTTCCTACTGAAGAATCT+AGG | + | chr7.2:9407160-9407179 | MS.gene020575:CDS | 45.0% | |
| TCGAGAACTCGTGAAGACTT+CGG | - | chr7.2:9408472-9408491 | None:intergenic | 45.0% | |
| TGATCGGAGATACTGGACTT+GGG | + | chr7.2:9407140-9407159 | MS.gene020575:CDS | 45.0% | |
| TGCAGCAATTGTGGCTTGAT+AGG | + | chr7.2:9407058-9407077 | MS.gene020575:intron | 45.0% | |
| TGCAGCCTATAGTGTAACAC+AGG | + | chr7.2:9408573-9408592 | MS.gene020575:intron | 45.0% | |
| TGCATGTCAATTTCGGCGAA+AGG | + | chr7.2:9407096-9407115 | MS.gene020575:CDS | 45.0% | |
| TGTGTTCCTAGCAATCCTCT+TGG | - | chr7.2:9407754-9407773 | None:intergenic | 45.0% | |
| TTGTGGCTTGATAGGGTTAC+TGG | + | chr7.2:9407066-9407085 | MS.gene020575:CDS | 45.0% | |
| TTTGATCCCAACCATGGGTT+TGG | - | chr7.2:9409055-9409074 | None:intergenic | 45.0% | |
| ! | ACACGAGCAACACAGTTTTC+AGG | - | chr7.2:9406734-9406753 | None:intergenic | 45.0% |
| ! | ATGGTGGTTTGAAGTGGATG+GGG | + | chr7.2:9408929-9408948 | MS.gene020575:CDS | 45.0% |
| ! | CACGAGCAACACAGTTTTCA+GGG | - | chr7.2:9406733-9406752 | None:intergenic | 45.0% |
| ! | GTGCTTCTCTTTGCGACTTT+TGG | + | chr7.2:9408349-9408368 | MS.gene020575:intron | 45.0% |
| ! | TGGCTTTTGATCCCAACCAT+GGG | - | chr7.2:9409060-9409079 | None:intergenic | 45.0% |
| !! | CAAAGAGAAGCACCTTTAGG+AGG | - | chr7.2:9408342-9408361 | None:intergenic | 45.0% |
| !! | TCGCAAAGAGAAGCACCTTT+AGG | - | chr7.2:9408345-9408364 | None:intergenic | 45.0% |
| CGAGAACTCGTGAAGACTTC+GGG | - | chr7.2:9408471-9408490 | None:intergenic | 50.0% | |
| CTCTCCTTTAGGCTTCACCT+TGG | + | chr7.2:9408987-9409006 | MS.gene020575:CDS | 50.0% | |
| GCTATGACCAAACCCATGGT+TGG | + | chr7.2:9409045-9409064 | MS.gene020575:CDS | 50.0% | |
| GCTGTCAACTTCAGATGGTC+AGG | + | chr7.2:9409091-9409110 | MS.gene020575:CDS | 50.0% | |
| GGCTTGATAGGGTTACTGGT+AGG | + | chr7.2:9407070-9407089 | MS.gene020575:CDS | 50.0% | |
| GGTGCTTCGTTGTCGAATCT+TGG | + | chr7.2:9406668-9406687 | MS.gene020575:CDS | 50.0% | |
| TCAAAAAACCGCCTCCCTTG+CGG | - | chr7.2:9409337-9409356 | None:intergenic | 50.0% | |
| TCAACCATCGCTCCAAGTCT+CGG | + | chr7.2:9406701-9406720 | MS.gene020575:CDS | 50.0% | |
| TCGTCCAAGGTGAAGCCTAA+AGG | - | chr7.2:9408994-9409013 | None:intergenic | 50.0% | |
| TGCAGCTATGACCAAACCCA+TGG | + | chr7.2:9409041-9409060 | MS.gene020575:CDS | 50.0% | |
| TTCCGACAGCGTAGTTCTTC+GGG | - | chr7.2:9406890-9406909 | None:intergenic | 50.0% | |
| ! | AGCATCATCTGAGTGCTGCT+TGG | + | chr7.2:9409115-9409134 | MS.gene020575:CDS | 50.0% |
| ! | CGCTTAAATCGCGCTTTTCG+CGG | + | chr7.2:9406794-9406813 | MS.gene020575:CDS | 50.0% |
| !! | CTGGCTTTTGATCCCAACCA+TGG | - | chr7.2:9409061-9409080 | None:intergenic | 50.0% |
| !! | TGCTTCCGCTGATTCCGTTT+GGG | + | chr7.2:9406820-9406839 | MS.gene020575:CDS | 50.0% |
| TGCCCGAAGAACTACGCTGT+CGG | + | chr7.2:9406885-9406904 | MS.gene020575:CDS | 55.0% | |
| TGGAGCGATGGTTGAACCGT+TGG | - | chr7.2:9406696-9406715 | None:intergenic | 55.0% | |
| TTGCGGTCTCTCAACTCGCT+AGG | - | chr7.2:9409320-9409339 | None:intergenic | 55.0% | |
| ! | AGCGAGTTGAGAGACCGCAA+GGG | + | chr7.2:9409320-9409339 | MS.gene020575:CDS | 55.0% |
| ! | GTGGTTTGAAGTGGATGGGG+AGG | + | chr7.2:9408932-9408951 | MS.gene020575:CDS | 55.0% |
| ! | TAGCGAGTTGAGAGACCGCA+AGG | + | chr7.2:9409319-9409338 | MS.gene020575:CDS | 55.0% |
| !! | CTGCTTCCGCTGATTCCGTT+TGG | + | chr7.2:9406819-9406838 | MS.gene020575:CDS | 55.0% |
| GAGTTGAGAGACCGCAAGGG+AGG | + | chr7.2:9409323-9409342 | MS.gene020575:CDS | 60.0% | |
| TCAGGGATGTCGCCGAGACT+TGG | - | chr7.2:9406716-9406735 | None:intergenic | 60.0% | |
| TTGAGAGACCGCAAGGGAGG+CGG | + | chr7.2:9409326-9409345 | MS.gene020575:CDS | 60.0% | |
| !! | TACGCGCCGACCGAGTCTTT+TGG | - | chr7.2:9409021-9409040 | None:intergenic | 60.0% |
| GTCGCCGAGACTTGGAGCGA+TGG | - | chr7.2:9406708-9406727 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 9406665 | 9409361 | 9406665 | ID=MS.gene020575 |
| chr7.2 | mRNA | 9406665 | 9409361 | 9406665 | ID=MS.gene020575.t1;Parent=MS.gene020575 |
| chr7.2 | exon | 9406665 | 9406973 | 9406665 | ID=MS.gene020575.t1.exon1;Parent=MS.gene020575.t1 |
| chr7.2 | CDS | 9406665 | 9406973 | 9406665 | ID=cds.MS.gene020575.t1;Parent=MS.gene020575.t1 |
| chr7.2 | exon | 9407063 | 9407181 | 9407063 | ID=MS.gene020575.t1.exon2;Parent=MS.gene020575.t1 |
| chr7.2 | CDS | 9407063 | 9407181 | 9407063 | ID=cds.MS.gene020575.t1;Parent=MS.gene020575.t1 |
| chr7.2 | exon | 9408899 | 9409361 | 9408899 | ID=MS.gene020575.t1.exon3;Parent=MS.gene020575.t1 |
| chr7.2 | CDS | 9408899 | 9409361 | 9408899 | ID=cds.MS.gene020575.t1;Parent=MS.gene020575.t1 |
| Gene Sequence |
| Protein sequence |
