Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020996.t1 | XP_003618084.1 | 98.8 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 7.60E-87 | 329.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020996.t1 | Q0IIJ0 | 53.3 | 150 | 68 | 2 | 9 | 157 | 6 | 154 | 1.0e-39 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020996.t1 | G7K0Q8 | 98.8 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 5.5e-87 | 329.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene020996.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95934 | MS.gene020996 | PPI |
| MS.gene020996 | MS.gene51964 | PPI |
| MS.gene51967 | MS.gene020996 | PPI |
| MS.gene92650 | MS.gene020996 | PPI |
| MS.gene020996 | MS.gene019081 | PPI |
| MS.gene63427 | MS.gene020996 | PPI |
| MS.gene51687 | MS.gene020996 | PPI |
| MS.gene009509 | MS.gene020996 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020996.t1 | MTR_5g098790 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 1.27e-120 | 337 |
| MS.gene020996.t1 | MTR_5g007400 | 27.632 | 152 | 87 | 3 | 14 | 142 | 17 | 168 | 6.38e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020996.t1 | AT5G11340 | 78.049 | 164 | 36 | 0 | 1 | 164 | 1 | 164 | 2.43e-97 | 278 |
| MS.gene020996.t1 | AT5G16800 | 23.926 | 163 | 101 | 3 | 4 | 143 | 20 | 182 | 2.10e-12 | 63.2 |
| MS.gene020996.t1 | AT5G16800 | 23.926 | 163 | 101 | 3 | 4 | 143 | 20 | 182 | 3.91e-12 | 62.8 |
| MS.gene020996.t1 | AT5G16800 | 23.926 | 163 | 101 | 3 | 4 | 143 | 20 | 182 | 5.72e-12 | 62.4 |
Find 31 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTCTTATAAAAGTTAA+TGG | 0.199299 | 5.1:+80123513 | None:intergenic |
| TGATGTTTACGTAATAGTTC+TGG | 0.333615 | 5.1:+80123467 | None:intergenic |
| CTGAAATGTTATTTCTTTGT+TGG | 0.338231 | 5.1:+80123400 | None:intergenic |
| CGGGTTTACATCATGACTTT+AGG | 0.340929 | 5.1:-80123916 | MS.gene020996:CDS |
| AGAAGGAAGGCGGGCAAGTT+CGG | 0.365269 | 5.1:-80123936 | MS.gene020996:CDS |
| GAAGGAAGGCGGGCAAGTTC+GGG | 0.367625 | 5.1:-80123935 | MS.gene020996:CDS |
| TGAAATGTTATTTCTTTGTT+GGG | 0.378604 | 5.1:+80123401 | None:intergenic |
| TATTTGTCGTTGTAACGAAC+AGG | 0.385879 | 5.1:+80125860 | None:intergenic |
| CCTTACCGTGGACTTGGTAT+TGG | 0.408366 | 5.1:-80123883 | MS.gene020996:intron |
| TGTTATTTCTTTGTTGGGCT+AGG | 0.418834 | 5.1:+80123406 | None:intergenic |
| TTAGCGCCTTACCGTGGACT+TGG | 0.429752 | 5.1:-80123889 | MS.gene020996:CDS |
| TGATAGAAAAGAACCTAGTT+TGG | 0.435318 | 5.1:+80125805 | None:intergenic |
| GAAGTATCAATATCATTAGA+TGG | 0.453181 | 5.1:-80125935 | MS.gene020996:CDS |
| CGCCTTCCTTCTTCTCAAGC+CGG | 0.465600 | 5.1:+80123947 | None:intergenic |
| TGCATGCCGGCTTGAGAAGA+AGG | 0.476399 | 5.1:-80123953 | MS.gene020996:CDS |
| TCCGCTGATTTCACCAAACT+AGG | 0.503020 | 5.1:-80125818 | MS.gene020996:intron |
| TACTACAGTGACATTTGTGT+TGG | 0.528723 | 5.1:-80123982 | MS.gene020996:CDS |
| CGCGAAGCAAAACATTTCTG+AGG | 0.547039 | 5.1:-80123569 | MS.gene020996:CDS |
| GGCTTGAGAAGAAGGAAGGC+GGG | 0.549023 | 5.1:-80123945 | MS.gene020996:CDS |
| GAAGTAGAATCAATGGGAGC+TGG | 0.565209 | 5.1:-80125962 | None:intergenic |
| TTTGGGTTTATGCAGGAACA+AGG | 0.566199 | 5.1:-80123618 | MS.gene020996:intron |
| GTGTTGGCGCAATTGCATGC+CGG | 0.568057 | 5.1:-80123966 | MS.gene020996:CDS |
| TGCCGGCTTGAGAAGAAGGA+AGG | 0.583442 | 5.1:-80123949 | MS.gene020996:CDS |
| CTTGTGACAACATAACAGTC+TGG | 0.600627 | 5.1:+80123439 | None:intergenic |
| CCAATACCAAGTCCACGGTA+AGG | 0.611714 | 5.1:+80123883 | None:intergenic |
| CGGCTTGAGAAGAAGGAAGG+CGG | 0.620221 | 5.1:-80123946 | MS.gene020996:CDS |
| ATTTGTCGTTGTAACGAACA+GGG | 0.627678 | 5.1:+80125861 | None:intergenic |
| TCTTACCAATACCAAGTCCA+CGG | 0.630487 | 5.1:+80123878 | None:intergenic |
| ACCTAGTTTGGTGAAATCAG+CGG | 0.645414 | 5.1:+80125817 | None:intergenic |
| CAGACTGTTATGTTGTCACA+AGG | 0.649227 | 5.1:-80123438 | MS.gene020996:CDS |
| GTGACAACATAACAGTCTGG+TGG | 0.757743 | 5.1:+80123442 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCTTATAAAAGTTAA+TGG | + | chr5.1:80125848-80125867 | None:intergenic | 10.0% |
| !! | TAAATTAAAACACTTAAAAA+GGG | + | chr5.1:80124892-80124911 | None:intergenic | 10.0% |
| !! | TTAAATTAAAACACTTAAAA+AGG | + | chr5.1:80124893-80124912 | None:intergenic | 10.0% |
| !!! | ATTTTCATATATATAAGTTA+GGG | + | chr5.1:80124869-80124888 | None:intergenic | 10.0% |
| !! | AAGTATAATAATCAATCTTA+AGG | + | chr5.1:80125346-80125365 | None:intergenic | 15.0% |
| !! | ATTATTATAACAACAGAAAT+TGG | - | chr5.1:80124462-80124481 | MS.gene020996:intron | 15.0% |
| !! | TAAAAAAAAATCCTAAACAA+AGG | + | chr5.1:80123873-80123892 | None:intergenic | 15.0% |
| !!! | GATTTTCATATATATAAGTT+AGG | + | chr5.1:80124870-80124889 | None:intergenic | 15.0% |
| !!! | TTTTAAAATGAAAAGTTGTT+AGG | - | chr5.1:80123908-80123927 | MS.gene020996:CDS | 15.0% |
| !!! | TTTTCATATATATAAGTTAG+GGG | + | chr5.1:80124868-80124887 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTCTTTCAG+AGG | - | chr5.1:80123955-80123974 | MS.gene020996:CDS | 15.0% |
| !! | ACATACAACAACATTAATAA+AGG | + | chr5.1:80125306-80125325 | None:intergenic | 20.0% |
| !! | AGAAAGATTTCAAAACAAAA+AGG | + | chr5.1:80125044-80125063 | None:intergenic | 20.0% |
| !! | AGAAATTTGATATGAATCTT+TGG | - | chr5.1:80125722-80125741 | MS.gene020996:intron | 20.0% |
| !! | ATAATAATCAATCTTAAGGT+TGG | + | chr5.1:80125342-80125361 | None:intergenic | 20.0% |
| !! | CAAATTGAAACAAATCATTA+TGG | + | chr5.1:80123824-80123843 | None:intergenic | 20.0% |
| !! | GAAATTTGATATGAATCTTT+GGG | - | chr5.1:80125723-80125742 | MS.gene020996:intron | 20.0% |
| !! | GAGTTTCTATCTAATTATTT+AGG | - | chr5.1:80124821-80124840 | MS.gene020996:intron | 20.0% |
| !! | TTAAAACATAGTGTATTCAT+TGG | - | chr5.1:80124111-80124130 | MS.gene020996:intron | 20.0% |
| !! | TTTCATATATATAAGTTAGG+GGG | + | chr5.1:80124867-80124886 | None:intergenic | 20.0% |
| !!! | AACAGTTTTAGTGAAATTTT+AGG | - | chr5.1:80123844-80123863 | MS.gene020996:intron | 20.0% |
| !!! | ACAGTTTTAGTGAAATTTTA+GGG | - | chr5.1:80123845-80123864 | MS.gene020996:intron | 20.0% |
| !!! | AGAATATTAACCTTCTAAAA+TGG | + | chr5.1:80123762-80123781 | None:intergenic | 20.0% |
| !!! | CATGTATTTTATTTCATACT+AGG | - | chr5.1:80124241-80124260 | MS.gene020996:intron | 20.0% |
| !!! | TTTAAGTTTTAACAAGAACA+TGG | - | chr5.1:80124908-80124927 | MS.gene020996:intron | 20.0% |
| ! | AAAAATAAGCCAATCCAAAT+CGG | - | chr5.1:80123722-80123741 | MS.gene020996:intron | 25.0% |
| ! | TAGATAGCAAACTTAAAGAA+CGG | + | chr5.1:80125693-80125712 | None:intergenic | 25.0% |
| !! | GAAGTATCAATATCATTAGA+TGG | - | chr5.1:80123423-80123442 | MS.gene020996:CDS | 25.0% |
| !! | TTCAGTTTTTCATGATAACA+TGG | - | chr5.1:80125258-80125277 | MS.gene020996:intron | 25.0% |
| !! | TTCTGAAAAGACAGAAAAAA+GGG | + | chr5.1:80124076-80124095 | None:intergenic | 25.0% |
| !! | TTTTATGAGATGTGGATAAA+GGG | + | chr5.1:80125082-80125101 | None:intergenic | 25.0% |
| !! | TTTTTATGAGATGTGGATAA+AGG | + | chr5.1:80125083-80125102 | None:intergenic | 25.0% |
| !!! | CTGAAAGTTTTTAACTTAGT+TGG | - | chr5.1:80125179-80125198 | MS.gene020996:intron | 25.0% |
| !!! | TTTTTAACTTAGTTGGAACT+TGG | - | chr5.1:80125186-80125205 | MS.gene020996:intron | 25.0% |
| AAAGCACACATATATCAAAC+AGG | + | chr5.1:80125240-80125259 | None:intergenic | 30.0% | |
| AAAGCATGGAGTAAAATCTA+AGG | + | chr5.1:80124652-80124671 | None:intergenic | 30.0% | |
| AACAGAAATCGAATGCAAAA+AGG | + | chr5.1:80124771-80124790 | None:intergenic | 30.0% | |
| AAGAACATGGAATACATAGA+GGG | - | chr5.1:80124921-80124940 | MS.gene020996:intron | 30.0% | |
| AATATGTGTTTGTGGTACAA+GGG | + | chr5.1:80125596-80125615 | None:intergenic | 30.0% | |
| AGATAGCAAACTTAAAGAAC+GGG | + | chr5.1:80125692-80125711 | None:intergenic | 30.0% | |
| ATGAAGAAAAACAAACCCTT+GGG | - | chr5.1:80124562-80124581 | MS.gene020996:intron | 30.0% | |
| CATGATAACATGGATGATTT+AGG | - | chr5.1:80125268-80125287 | MS.gene020996:intron | 30.0% | |
| GATAAAGGGACATTAATCAT+AGG | + | chr5.1:80125068-80125087 | None:intergenic | 30.0% | |
| GATTCCAATAAAGATGACAA+CGG | + | chr5.1:80125110-80125129 | None:intergenic | 30.0% | |
| GTAGTGAAACTATATAGTCT+TGG | + | chr5.1:80125132-80125151 | None:intergenic | 30.0% | |
| TAGCTTAGAGTGTGAAATAA+TGG | + | chr5.1:80123579-80123598 | None:intergenic | 30.0% | |
| TGATAGAAAAGAACCTAGTT+TGG | + | chr5.1:80123556-80123575 | None:intergenic | 30.0% | |
| TGATGTTTACGTAATAGTTC+TGG | + | chr5.1:80125894-80125913 | None:intergenic | 30.0% | |
| TTTCATACTAGGATTAACGT+CGG | - | chr5.1:80124252-80124271 | MS.gene020996:intron | 30.0% | |
| ! | ACATATTGGAGACTTTTGTT+AGG | - | chr5.1:80125609-80125628 | MS.gene020996:intron | 30.0% |
| ! | ATAGTGTATTCATTGGCTAA+AGG | - | chr5.1:80124118-80124137 | MS.gene020996:intron | 30.0% |
| ! | CTTCTGAAAAGACAGAAAAA+AGG | + | chr5.1:80124077-80124096 | None:intergenic | 30.0% |
| ! | GAAAAATTGAAGGAGGATTT+TGG | + | chr5.1:80124512-80124531 | None:intergenic | 30.0% |
| ! | TTTTGCATTCGATTTCTGTT+GGG | - | chr5.1:80124771-80124790 | MS.gene020996:intron | 30.0% |
| ! | TTTTTGCATTCGATTTCTGT+TGG | - | chr5.1:80124770-80124789 | MS.gene020996:intron | 30.0% |
| !! | ACTCTAAGCTATTGCTTTTA+CGG | - | chr5.1:80123588-80123607 | MS.gene020996:CDS | 30.0% |
| !! | ATTAACCTTCTAAAATGGAC+AGG | + | chr5.1:80123757-80123776 | None:intergenic | 30.0% |
| !! | TTCTTTTGCTGCTTGATTTA+AGG | - | chr5.1:80125005-80125024 | MS.gene020996:intron | 30.0% |
| AAATACATGAGAGAGAAAGC+AGG | + | chr5.1:80124230-80124249 | None:intergenic | 35.0% | |
| AAGTCTCCAATATGTGTTTG+TGG | + | chr5.1:80125604-80125623 | None:intergenic | 35.0% | |
| ATACAAAATCCCCCCAATAT+GGG | + | chr5.1:80124541-80124560 | None:intergenic | 35.0% | |
| ATTTGTCGTTGTAACGAACA+GGG | + | chr5.1:80123500-80123519 | None:intergenic | 35.0% | |
| CAAGAACATGGAATACATAG+AGG | - | chr5.1:80124920-80124939 | MS.gene020996:intron | 35.0% | |
| CAATATGTGTTTGTGGTACA+AGG | + | chr5.1:80125597-80125616 | None:intergenic | 35.0% | |
| CAGTCATAGCAAATCCTTTA+AGG | - | chr5.1:80124350-80124369 | MS.gene020996:intron | 35.0% | |
| CATATATATAAGTTAGGGGG+AGG | + | chr5.1:80124864-80124883 | None:intergenic | 35.0% | |
| CATGAAGAAAAACAAACCCT+TGG | - | chr5.1:80124561-80124580 | MS.gene020996:intron | 35.0% | |
| CTAAAATGGACAGGAACTAA+GGG | + | chr5.1:80123748-80123767 | None:intergenic | 35.0% | |
| CTTGTACCACAAACACATAT+TGG | - | chr5.1:80125595-80125614 | MS.gene020996:intron | 35.0% | |
| GGAGTAGATGGAAAAAAAGA+GGG | - | chr5.1:80124400-80124419 | MS.gene020996:intron | 35.0% | |
| GTAGATGTGTTGAATGCTAA+TGG | - | chr5.1:80124963-80124982 | MS.gene020996:intron | 35.0% | |
| TACTACAGTGACATTTGTGT+TGG | - | chr5.1:80125376-80125395 | MS.gene020996:intron | 35.0% | |
| TATTTGTCGTTGTAACGAAC+AGG | + | chr5.1:80123501-80123520 | None:intergenic | 35.0% | |
| TGAAGAAAAACAAACCCTTG+GGG | - | chr5.1:80124563-80124582 | MS.gene020996:intron | 35.0% | |
| TGCTTATGCAAATACAGCTT+AGG | - | chr5.1:80123618-80123637 | MS.gene020996:intron | 35.0% | |
| TGTATAGAGGTTTCATTGGA+TGG | + | chr5.1:80124200-80124219 | None:intergenic | 35.0% | |
| TTAGGTGCAAGCATCAAATT+AGG | - | chr5.1:80125627-80125646 | MS.gene020996:intron | 35.0% | |
| TTTGCATTCGATTTCTGTTG+GGG | - | chr5.1:80124772-80124791 | MS.gene020996:intron | 35.0% | |
| ! | ATGAATCTTTGGGTTTATGC+AGG | - | chr5.1:80125733-80125752 | MS.gene020996:intron | 35.0% |
| ! | CTGCTATTTGATATCTTCCA+TGG | - | chr5.1:80124742-80124761 | MS.gene020996:intron | 35.0% |
| ! | TAGTTCCTGTCCATTTTAGA+AGG | - | chr5.1:80123749-80123768 | MS.gene020996:intron | 35.0% |
| ! | TCTAAAATGGACAGGAACTA+AGG | + | chr5.1:80123749-80123768 | None:intergenic | 35.0% |
| !! | ATTTTTCAGTTCCCCCATAT+TGG | - | chr5.1:80124525-80124544 | MS.gene020996:intron | 35.0% |
| !! | TTACTTTTAGCCAAGAGTAG+TGG | + | chr5.1:80124310-80124329 | None:intergenic | 35.0% |
| !! | TTTTGCTGCTTGATTTAAGG+AGG | - | chr5.1:80125008-80125027 | MS.gene020996:intron | 35.0% |
| !! | TTTTTCAGTTCCCCCATATT+GGG | - | chr5.1:80124526-80124545 | MS.gene020996:intron | 35.0% |
| !!! | ATTTTAGGGTGCCTTTGTTT+AGG | - | chr5.1:80123859-80123878 | MS.gene020996:intron | 35.0% |
| ATATATAAGTTAGGGGGAGG+CGG | + | chr5.1:80124861-80124880 | None:intergenic | 40.0% | |
| CAGACTGTTATGTTGTCACA+AGG | - | chr5.1:80125920-80125939 | MS.gene020996:CDS | 40.0% | |
| CAGAGGTAACACATGAACTT+TGG | - | chr5.1:80123972-80123991 | MS.gene020996:CDS | 40.0% | |
| CAGTCCGTTGTCATCTTTAT+TGG | - | chr5.1:80125103-80125122 | MS.gene020996:intron | 40.0% | |
| CGAATGCAAAAAGGATACCA+TGG | + | chr5.1:80124762-80124781 | None:intergenic | 40.0% | |
| CGGGTTTACATCATGACTTT+AGG | - | chr5.1:80125442-80125461 | MS.gene020996:intron | 40.0% | |
| CTTGTGACAACATAACAGTC+TGG | + | chr5.1:80125922-80125941 | None:intergenic | 40.0% | |
| GAAGAAAAACAAACCCTTGG+GGG | - | chr5.1:80124564-80124583 | MS.gene020996:intron | 40.0% | |
| GATACAAAATCCCCCCAATA+TGG | + | chr5.1:80124542-80124561 | None:intergenic | 40.0% | |
| GGCTAAAGGAAAATGCTTGT+TGG | - | chr5.1:80124132-80124151 | MS.gene020996:intron | 40.0% | |
| GGGAACTGAAAAATTGAAGG+AGG | + | chr5.1:80124519-80124538 | None:intergenic | 40.0% | |
| GGGAGTAGATGGAAAAAAAG+AGG | - | chr5.1:80124399-80124418 | MS.gene020996:intron | 40.0% | |
| GTGCTATATACCACTACTCT+TGG | - | chr5.1:80124297-80124316 | MS.gene020996:intron | 40.0% | |
| TAAGGCTATGTTTGCGAGTT+TGG | + | chr5.1:80124634-80124653 | None:intergenic | 40.0% | |
| TACAAAATCCCCCCAATATG+GGG | + | chr5.1:80124540-80124559 | None:intergenic | 40.0% | |
| TCGGTGTATAGAGGTTTCAT+TGG | + | chr5.1:80124204-80124223 | None:intergenic | 40.0% | |
| TCTTACCAATACCAAGTCCA+CGG | + | chr5.1:80125483-80125502 | None:intergenic | 40.0% | |
| TGAGAGAGAAAGCAGGAAAT+CGG | + | chr5.1:80124223-80124242 | None:intergenic | 40.0% | |
| TGGGGGAACTGAAAAATTGA+AGG | + | chr5.1:80124522-80124541 | None:intergenic | 40.0% | |
| ! | ACCTAGTTTGGTGAAATCAG+CGG | + | chr5.1:80123544-80123563 | None:intergenic | 40.0% |
| ! | CATGCTTTCGTTGCACTTTT+CGG | - | chr5.1:80124664-80124683 | MS.gene020996:intron | 40.0% |
| ! | CTGTGTTTTGCGAGTTTAGA+GGG | - | chr5.1:80124373-80124392 | MS.gene020996:intron | 40.0% |
| ! | GGGAAGTTCTCTCTTTTCTT+TGG | - | chr5.1:80124941-80124960 | MS.gene020996:intron | 40.0% |
| ! | TGTGTTTTGCGAGTTTAGAG+GGG | - | chr5.1:80124374-80124393 | MS.gene020996:intron | 40.0% |
| ! | TTTGGGTTTATGCAGGAACA+AGG | - | chr5.1:80125740-80125759 | MS.gene020996:intron | 40.0% |
| ! | TTTTCAGTTCCCCCATATTG+GGG | - | chr5.1:80124527-80124546 | MS.gene020996:intron | 40.0% |
| !! | ATAGCAGTTCTGAATTGCAC+AGG | + | chr5.1:80124729-80124748 | None:intergenic | 40.0% |
| !! | ATTTGCTATGACTGACTCCA+GGG | + | chr5.1:80124344-80124363 | None:intergenic | 40.0% |
| !! | TAGCAGTTCTGAATTGCACA+GGG | + | chr5.1:80124728-80124747 | None:intergenic | 40.0% |
| !!! | CGGACTGTTTTTATGAGATG+TGG | + | chr5.1:80125090-80125109 | None:intergenic | 40.0% |
| !!! | GAGGGTTTTGGGTAAAATGA+AGG | + | chr5.1:80124602-80124621 | None:intergenic | 40.0% |
| !!! | GGTTTTGGGTAAAATGAAGG+AGG | + | chr5.1:80124599-80124618 | None:intergenic | 40.0% |
| AAGTAAACCTGCTGAAACCC+TGG | - | chr5.1:80124324-80124343 | MS.gene020996:intron | 45.0% | |
| ACAAAATCCCCCCAATATGG+GGG | + | chr5.1:80124539-80124558 | None:intergenic | 45.0% | |
| AGCAGGAAATCGGTGTATAG+AGG | + | chr5.1:80124213-80124232 | None:intergenic | 45.0% | |
| CGCGAAGCAAAACATTTCTG+AGG | - | chr5.1:80125789-80125808 | MS.gene020996:intron | 45.0% | |
| CTATGTTTGCGAGTTTGGAG+GGG | + | chr5.1:80124629-80124648 | None:intergenic | 45.0% | |
| CTCGCAAAACACAGCCTTAA+AGG | + | chr5.1:80124367-80124386 | None:intergenic | 45.0% | |
| GCTATGTTTGCGAGTTTGGA+GGG | + | chr5.1:80124630-80124649 | None:intergenic | 45.0% | |
| GTGACAACATAACAGTCTGG+TGG | + | chr5.1:80125919-80125938 | None:intergenic | 45.0% | |
| TCGTTTACGTTCGCGTTTGT+CGG | + | chr5.1:80124166-80124185 | None:intergenic | 45.0% | |
| TGGGTAAAATGAAGGAGGCA+AGG | + | chr5.1:80124594-80124613 | None:intergenic | 45.0% | |
| TTTCAGTTCCCCCATATTGG+GGG | - | chr5.1:80124528-80124547 | MS.gene020996:intron | 45.0% | |
| ! | CGAAAAGTGCAACGAAAGCA+TGG | + | chr5.1:80124666-80124685 | None:intergenic | 45.0% |
| ! | GCTGTGTTTTGCGAGTTTAG+AGG | - | chr5.1:80124372-80124391 | MS.gene020996:intron | 45.0% |
| ! | TTTTGCGAGTTTAGAGGGGA+GGG | - | chr5.1:80124378-80124397 | MS.gene020996:intron | 45.0% |
| !! | AACTAAGGGCCGATTTGGAT+TGG | + | chr5.1:80123734-80123753 | None:intergenic | 45.0% |
| !! | GATTTGCTATGACTGACTCC+AGG | + | chr5.1:80124345-80124364 | None:intergenic | 45.0% |
| !! | TCCGCTGATTTCACCAAACT+AGG | - | chr5.1:80123540-80123559 | MS.gene020996:CDS | 45.0% |
| ACAGGAACTAAGGGCCGATT+TGG | + | chr5.1:80123739-80123758 | None:intergenic | 50.0% | |
| CCAATACCAAGTCCACGGTA+AGG | + | chr5.1:80125478-80125497 | None:intergenic | 50.0% | |
| GGCTATGTTTGCGAGTTTGG+AGG | + | chr5.1:80124631-80124650 | None:intergenic | 50.0% | |
| TTCAGTTCCCCCATATTGGG+GGG | - | chr5.1:80124529-80124548 | MS.gene020996:intron | 50.0% | |
| TTTGCGAGTTTAGAGGGGAG+GGG | - | chr5.1:80124379-80124398 | MS.gene020996:intron | 50.0% | |
| ! | CCTTACCGTGGACTTGGTAT+TGG | - | chr5.1:80125475-80125494 | MS.gene020996:intron | 50.0% |
| ! | GTTTTGCGAGTTTAGAGGGG+AGG | - | chr5.1:80124377-80124396 | MS.gene020996:intron | 50.0% |
| AGAAGGAAGGCGGGCAAGTT+CGG | - | chr5.1:80125422-80125441 | MS.gene020996:intron | 55.0% | |
| CGCCTTCCTTCTTCTCAAGC+CGG | + | chr5.1:80125414-80125433 | None:intergenic | 55.0% | |
| CGGCTTGAGAAGAAGGAAGG+CGG | - | chr5.1:80125412-80125431 | MS.gene020996:intron | 55.0% | |
| GGCTTGAGAAGAAGGAAGGC+GGG | - | chr5.1:80125413-80125432 | MS.gene020996:intron | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+CGG | + | chr5.1:80124625-80124644 | None:intergenic | 55.0% | |
| TTAGAGGGGAGGGGAGTAGA+TGG | - | chr5.1:80124388-80124407 | MS.gene020996:intron | 55.0% | |
| TTAGCGCCTTACCGTGGACT+TGG | - | chr5.1:80125469-80125488 | MS.gene020996:intron | 55.0% | |
| TTTGCGAGTTTGGAGGGGAC+GGG | + | chr5.1:80124624-80124643 | None:intergenic | 55.0% | |
| ! | ACTGACTCCAGGGTTTCAGC+AGG | + | chr5.1:80124334-80124353 | None:intergenic | 55.0% |
| ! | GTGTTGGCGCAATTGCATGC+CGG | - | chr5.1:80125392-80125411 | MS.gene020996:intron | 55.0% |
| !! | TGCATGCCGGCTTGAGAAGA+AGG | - | chr5.1:80125405-80125424 | MS.gene020996:intron | 55.0% |
| !! | TGCCGGCTTGAGAAGAAGGA+AGG | - | chr5.1:80125409-80125428 | MS.gene020996:intron | 55.0% |
| !!! | GGTGTTTTAGCGCCTTACCG+TGG | - | chr5.1:80125463-80125482 | MS.gene020996:intron | 55.0% |
| GAAGGAAGGCGGGCAAGTTC+GGG | - | chr5.1:80125423-80125442 | MS.gene020996:intron | 60.0% | |
| GAGGCAAGGTAGTCCCCCAA+GGG | + | chr5.1:80124580-80124599 | None:intergenic | 60.0% | |
| CGAGTTTGGAGGGGACGGGA+GGG | + | chr5.1:80124620-80124639 | None:intergenic | 65.0% | |
| GGAGGCAAGGTAGTCCCCCA+AGG | + | chr5.1:80124581-80124600 | None:intergenic | 65.0% | |
| ! | GGAGGGGACGGGAGGGTTTT+GGG | + | chr5.1:80124613-80124632 | None:intergenic | 65.0% |
| ! | TGGAGGGGACGGGAGGGTTT+TGG | + | chr5.1:80124614-80124633 | None:intergenic | 65.0% |
| GCGAGTTTGGAGGGGACGGG+AGG | + | chr5.1:80124621-80124640 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 80123408 | 80125972 | 80123408 | ID=MS.gene020996 |
| chr5.1 | mRNA | 80123408 | 80125972 | 80123408 | ID=MS.gene020996.t1;Parent=MS.gene020996 |
| chr5.1 | exon | 80125819 | 80125972 | 80125819 | ID=MS.gene020996.t1.exon1;Parent=MS.gene020996.t1 |
| chr5.1 | CDS | 80125819 | 80125972 | 80125819 | ID=cds.MS.gene020996.t1;Parent=MS.gene020996.t1 |
| chr5.1 | exon | 80123884 | 80124006 | 80123884 | ID=MS.gene020996.t1.exon2;Parent=MS.gene020996.t1 |
| chr5.1 | CDS | 80123884 | 80124006 | 80123884 | ID=cds.MS.gene020996.t1;Parent=MS.gene020996.t1 |
| chr5.1 | exon | 80123408 | 80123625 | 80123408 | ID=MS.gene020996.t1.exon3;Parent=MS.gene020996.t1 |
| chr5.1 | CDS | 80123408 | 80123625 | 80123408 | ID=cds.MS.gene020996.t1;Parent=MS.gene020996.t1 |
| Gene Sequence |
| Protein sequence |
