Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019081.t1 | KEH33239.1 | 86.9 | 153 | 15 | 2 | 1 | 153 | 8 | 155 | 1.80E-66 | 261.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019081.t1 | Q9FKI4 | 44.2 | 154 | 75 | 4 | 6 | 149 | 2 | 154 | 3.1e-22 | 106.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019081.t1 | A0A072UTR7 | 86.9 | 153 | 15 | 2 | 1 | 153 | 8 | 155 | 1.3e-66 | 261.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene019081.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62426 | MS.gene019081 | PPI |
| MS.gene019081 | MS.gene029211 | PPI |
| MS.gene047400 | MS.gene019081 | PPI |
| MS.gene067362 | MS.gene019081 | PPI |
| MS.gene036800 | MS.gene019081 | PPI |
| MS.gene004214 | MS.gene019081 | PPI |
| MS.gene019081 | MS.gene001986 | PPI |
| MS.gene056257 | MS.gene019081 | PPI |
| MS.gene59047 | MS.gene019081 | PPI |
| MS.gene77827 | MS.gene019081 | PPI |
| MS.gene22814 | MS.gene019081 | PPI |
| MS.gene41916 | MS.gene019081 | PPI |
| MS.gene050629 | MS.gene019081 | PPI |
| MS.gene059422 | MS.gene019081 | PPI |
| MS.gene65650 | MS.gene019081 | PPI |
| MS.gene020996 | MS.gene019081 | PPI |
| MS.gene019081 | MS.gene054186 | PPI |
| MS.gene037324 | MS.gene019081 | PPI |
| MS.gene38111 | MS.gene019081 | PPI |
| MS.gene002540 | MS.gene019081 | PPI |
| MS.gene024463 | MS.gene019081 | PPI |
| MS.gene019081 | MS.gene037362 | PPI |
| MS.gene93131 | MS.gene019081 | PPI |
| MS.gene038837 | MS.gene019081 | PPI |
| MS.gene99744 | MS.gene019081 | PPI |
| MS.gene029242 | MS.gene019081 | PPI |
| MS.gene61498 | MS.gene019081 | PPI |
| MS.gene045843 | MS.gene019081 | PPI |
| MS.gene01518 | MS.gene019081 | PPI |
| MS.gene025927 | MS.gene019081 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019081.t1 | MTR_3g030055 | 86.928 | 153 | 15 | 2 | 1 | 153 | 8 | 155 | 1.15e-92 | 265 |
| MS.gene019081.t1 | MTR_3g030055 | 88.776 | 98 | 9 | 1 | 1 | 98 | 1 | 96 | 3.32e-58 | 177 |
| MS.gene019081.t1 | MTR_3g034200 | 46.795 | 156 | 72 | 4 | 6 | 151 | 2 | 156 | 3.88e-34 | 118 |
| MS.gene019081.t1 | MTR_3g050860 | 38.217 | 157 | 86 | 6 | 1 | 151 | 1 | 152 | 1.70e-17 | 78.2 |
| MS.gene019081.t1 | MTR_0439s0020 | 34.459 | 148 | 86 | 7 | 1 | 142 | 1 | 143 | 2.01e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019081.t1 | AT5G13780 | 43.871 | 155 | 76 | 4 | 6 | 150 | 2 | 155 | 5.90e-30 | 107 |
| MS.gene019081.t1 | AT1G03150 | 28.070 | 114 | 78 | 3 | 35 | 146 | 39 | 150 | 1.72e-11 | 59.3 |
Find 39 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCACAATGTGCCAATATT+CGG | 0.287513 | 3.4:+37411168 | None:intergenic |
| CTCGTTACTCGCCCGAATAT+TGG | 0.335099 | 3.4:-37411180 | MS.gene019081:CDS |
| TGCATAAGAGTTGCAACATT+TGG | 0.337938 | 3.4:-37411234 | MS.gene019081:CDS |
| GAGCTGCAGAGTTGCTCTTC+CGG | 0.347682 | 3.4:+37410279 | None:intergenic |
| TCCACAATGTGCCAATATTC+GGG | 0.349965 | 3.4:+37411169 | None:intergenic |
| TCTTGGTTTGTTTCAAAAGA+TGG | 0.379062 | 3.4:-37410258 | MS.gene019081:CDS |
| TGCAACATTTGGAGACGTAT+TGG | 0.394327 | 3.4:-37411223 | MS.gene019081:CDS |
| GATAGGTATGGTGAACGAAT+AGG | 0.421395 | 3.4:+37411040 | None:intergenic |
| CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3.4:+37410211 | None:intergenic |
| ATAGGTATGGTGAACGAATA+GGG | 0.433258 | 3.4:+37411041 | None:intergenic |
| CTCTGAAGGTGAAGAGGAAG+AGG | 0.447607 | 3.4:-37411091 | MS.gene019081:CDS |
| CTTGGTTTGTTTCAAAAGAT+GGG | 0.449922 | 3.4:-37410257 | MS.gene019081:CDS |
| CGCCCAAAACACCATGGAAA+AGG | 0.453353 | 3.4:-37410983 | MS.gene019081:intron |
| AAGAGCAACTCTGCAGCTCT+TGG | 0.462439 | 3.4:-37410275 | MS.gene019081:CDS |
| AAGACGTTTCAGTGCATGTC+CGG | 0.496711 | 3.4:-37410298 | MS.gene019081:CDS |
| CATTTGGAGACGTATTGGAT+TGG | 0.499964 | 3.4:-37411218 | MS.gene019081:CDS |
| GTTGCTTACCTCCTCTCTGA+AGG | 0.508220 | 3.4:-37411105 | MS.gene019081:CDS |
| AAGGTGAAGAGGAAGAGGAA+GGG | 0.530803 | 3.4:-37411086 | MS.gene019081:CDS |
| AGGAACAATGTCGTCAAAGA+AGG | 0.539052 | 3.4:-37411259 | None:intergenic |
| GTCTTGAGGAAGATACTCAA+GGG | 0.554037 | 3.4:-37410179 | MS.gene019081:CDS |
| GAAGGTGAAGAGGAAGAGGA+AGG | 0.556577 | 3.4:-37411087 | MS.gene019081:CDS |
| TGTCTTGAGGAAGATACTCA+AGG | 0.562517 | 3.4:-37410180 | MS.gene019081:CDS |
| CCTCCTCTCTGAAGGTGAAG+AGG | 0.564442 | 3.4:-37411097 | MS.gene019081:CDS |
| GCCCGAATATTGGCACATTG+TGG | 0.568169 | 3.4:-37411170 | MS.gene019081:CDS |
| TTACACACTTCACGAGGTGA+AGG | 0.607853 | 3.4:-37410234 | MS.gene019081:CDS |
| CCTCTTCACCTTCAGAGAGG+AGG | 0.614706 | 3.4:+37411097 | None:intergenic |
| AGGAGGACGCTATTGTCTTG+AGG | 0.615172 | 3.4:-37410193 | MS.gene019081:CDS |
| CACCGCCGCCCAAAACACCA+TGG | 0.620119 | 3.4:-37410989 | MS.gene019081:CDS |
| ATAGGGAGGCGATACTAAAG+TGG | 0.620673 | 3.4:+37411058 | None:intergenic |
| CACCATACCTATCGTAAACG+TGG | 0.631082 | 3.4:-37411030 | MS.gene019081:CDS |
| GAGTGGGTCTCACAGTTAGG+TGG | 0.634645 | 3.4:+37410145 | None:intergenic |
| CTTCCTCTTCACCTTCAGAG+AGG | 0.638002 | 3.4:+37411094 | None:intergenic |
| GAAGAAGCTTATTCATGTCG+CGG | 0.645766 | 3.4:-37411148 | MS.gene019081:CDS |
| TACCACGTTTACGATAGGTA+TGG | 0.651983 | 3.4:+37411028 | None:intergenic |
| AGCGATACCACGTTTACGAT+AGG | 0.681782 | 3.4:+37411023 | None:intergenic |
| TCTTGAGGAAGATACTCAAG+GGG | 0.688967 | 3.4:-37410178 | MS.gene019081:CDS |
| CATGTCGCGGACAATTGCAG+CGG | 0.697708 | 3.4:-37411135 | MS.gene019081:CDS |
| GATGGGTTACACACTTCACG+AGG | 0.713948 | 3.4:-37410240 | MS.gene019081:CDS |
| GGTATGGTGAACGAATAGGG+AGG | 0.789435 | 3.4:+37411044 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTGTTTTTTGGATT+AGG | - | chr3.4:37410478-37410497 | MS.gene019081:intron | 15.0% |
| !!! | TCTGTTATAATTTTGTTTTT+TGG | - | chr3.4:37410472-37410491 | MS.gene019081:intron | 15.0% |
| !!! | AGACTTTTAATGGAAAAAAT+AGG | + | chr3.4:37411059-37411078 | None:intergenic | 20.0% |
| !!! | TTTCTTCTTGTTAATGATTT+TGG | - | chr3.4:37410852-37410871 | MS.gene019081:intron | 20.0% |
| ! | ACAACCAAAAACATCAAAAA+AGG | + | chr3.4:37411031-37411050 | None:intergenic | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | + | chr3.4:37410936-37410955 | None:intergenic | 25.0% |
| !! | ACATTGTAACAGACTTTTAA+TGG | + | chr3.4:37411069-37411088 | None:intergenic | 25.0% |
| !! | ATGGAGTTTGTTTAATGTTT+AGG | - | chr3.4:37410558-37410577 | MS.gene019081:intron | 25.0% |
| !!! | TTTTCTTGTTTCCTAATCTT+GGG | - | chr3.4:37410951-37410970 | MS.gene019081:intron | 25.0% |
| ACAATGTGTAATTTGACTGA+AGG | - | chr3.4:37411082-37411101 | MS.gene019081:CDS | 30.0% | |
| AGAAAACAGAAAATCATCAC+GGG | + | chr3.4:37410681-37410700 | None:intergenic | 30.0% | |
| CAGAAAACAGAAAATCATCA+CGG | + | chr3.4:37410682-37410701 | None:intergenic | 30.0% | |
| TAATGTTTAGGTATGAAGCT+TGG | - | chr3.4:37410570-37410589 | MS.gene019081:intron | 30.0% | |
| TCCATACATAACCAGTTAAA+AGG | + | chr3.4:37410543-37410562 | None:intergenic | 30.0% | |
| ! | CTTCTTGTTAATGATTTTGG+TGG | - | chr3.4:37410855-37410874 | MS.gene019081:intron | 30.0% |
| ! | TTTCTTGTTTCCTAATCTTG+GGG | - | chr3.4:37410952-37410971 | MS.gene019081:intron | 30.0% |
| !! | CTTGGTTTGTTTCAAAAGAT+GGG | - | chr3.4:37411155-37411174 | MS.gene019081:CDS | 30.0% |
| !! | GTTTTCTTGTTTCCTAATCT+TGG | - | chr3.4:37410950-37410969 | MS.gene019081:intron | 30.0% |
| !! | TCTTGGTTTGTTTCAAAAGA+TGG | - | chr3.4:37411154-37411173 | MS.gene019081:CDS | 30.0% |
| !! | TTGTTAATGATTTTGGTGGT+TGG | - | chr3.4:37410859-37410878 | MS.gene019081:intron | 30.0% |
| !!! | CAGACCTTTTTTGATGTTTT+TGG | - | chr3.4:37411024-37411043 | MS.gene019081:CDS | 30.0% |
| AAAACACCATGGAAAAGGTT+AGG | - | chr3.4:37410434-37410453 | MS.gene019081:intron | 35.0% | |
| AACCAAAAGAAAAATCTCGG+AGG | + | chr3.4:37410933-37410952 | None:intergenic | 35.0% | |
| AATCTGAGTTTCACTATGCT+AGG | - | chr3.4:37410706-37410725 | MS.gene019081:intron | 35.0% | |
| ATAGGTATGGTGAACGAATA+GGG | + | chr3.4:37410374-37410393 | None:intergenic | 35.0% | |
| ATGTGTAATTTGACTGAAGG+TGG | - | chr3.4:37411085-37411104 | MS.gene019081:CDS | 35.0% | |
| CTAGGATTATCTTCTATTCC+TGG | - | chr3.4:37410724-37410743 | MS.gene019081:intron | 35.0% | |
| CTCCTCATCATCAAAATACT+TGG | + | chr3.4:37411204-37411223 | None:intergenic | 35.0% | |
| TGCATAAGAGTTGCAACATT+TGG | - | chr3.4:37410178-37410197 | MS.gene019081:CDS | 35.0% | |
| TGTGTAATTTGACTGAAGGT+GGG | - | chr3.4:37411086-37411105 | MS.gene019081:CDS | 35.0% | |
| TTATCTTCTATTCCTGGAAG+TGG | - | chr3.4:37410730-37410749 | MS.gene019081:intron | 35.0% | |
| TTCCACAATGTGCCAATATT+CGG | + | chr3.4:37410247-37410266 | None:intergenic | 35.0% | |
| ! | AACAAACCTAACCTTTTCCA+TGG | + | chr3.4:37410443-37410462 | None:intergenic | 35.0% |
| ! | AACCTTTTCCATGGTGTTTT+GGG | + | chr3.4:37410434-37410453 | None:intergenic | 35.0% |
| ! | CGTGATGATTTTCTGTTTTC+TGG | - | chr3.4:37410680-37410699 | MS.gene019081:intron | 35.0% |
| ! | TAACCTTTTCCATGGTGTTT+TGG | + | chr3.4:37410435-37410454 | None:intergenic | 35.0% |
| ! | TTGGTTGAGTTGTTTCGTTA+GGG | - | chr3.4:37410589-37410608 | MS.gene019081:intron | 35.0% |
| ! | TTTTCAGATAGATCACACAG+TGG | + | chr3.4:37410658-37410677 | None:intergenic | 35.0% |
| !! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3.4:37410539-37410558 | MS.gene019081:intron | 35.0% |
| !! | TTCTGTAGTTAGTCTTGTCT+GGG | - | chr3.4:37410895-37410914 | MS.gene019081:intron | 35.0% |
| !! | TTTCTGTAGTTAGTCTTGTC+TGG | - | chr3.4:37410894-37410913 | MS.gene019081:intron | 35.0% |
| !!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3.4:37411202-37411221 | MS.gene019081:CDS | 35.0% |
| AAACACTTCCCACAGAGAAT+TGG | + | chr3.4:37410810-37410829 | None:intergenic | 40.0% | |
| AAAGGGAGTGGCAATGATTA+GGG | + | chr3.4:37410770-37410789 | None:intergenic | 40.0% | |
| CATTTGGAGACGTATTGGAT+TGG | - | chr3.4:37410194-37410213 | MS.gene019081:CDS | 40.0% | |
| GAAGAAGCTTATTCATGTCG+CGG | - | chr3.4:37410264-37410283 | MS.gene019081:CDS | 40.0% | |
| GATAGGTATGGTGAACGAAT+AGG | + | chr3.4:37410375-37410394 | None:intergenic | 40.0% | |
| GTCTTGAGGAAGATACTCAA+GGG | - | chr3.4:37411233-37411252 | MS.gene019081:CDS | 40.0% | |
| TAAAGGGAGTGGCAATGATT+AGG | + | chr3.4:37410771-37410790 | None:intergenic | 40.0% | |
| TACCACGTTTACGATAGGTA+TGG | + | chr3.4:37410387-37410406 | None:intergenic | 40.0% | |
| TATTCCTGGAAGTGGTTCTT+CGG | - | chr3.4:37410738-37410757 | MS.gene019081:intron | 40.0% | |
| TCCACAATGTGCCAATATTC+GGG | + | chr3.4:37410246-37410265 | None:intergenic | 40.0% | |
| TCTTGAGGAAGATACTCAAG+GGG | - | chr3.4:37411234-37411253 | MS.gene019081:CDS | 40.0% | |
| TGCAACATTTGGAGACGTAT+TGG | - | chr3.4:37410189-37410208 | MS.gene019081:CDS | 40.0% | |
| TGTCTTGAGGAAGATACTCA+AGG | - | chr3.4:37411232-37411251 | MS.gene019081:CDS | 40.0% | |
| ! | CTTGGTTGAGTTGTTTCGTT+AGG | - | chr3.4:37410588-37410607 | MS.gene019081:intron | 40.0% |
| ! | GGATTAGGTTTGTCACTTGT+GGG | - | chr3.4:37410493-37410512 | MS.gene019081:intron | 40.0% |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | - | chr3.4:37410928-37410947 | MS.gene019081:intron | 40.0% |
| ! | TGGATTAGGTTTGTCACTTG+TGG | - | chr3.4:37410492-37410511 | MS.gene019081:intron | 40.0% |
| ! | TGGTTGAGTTGTTTCGTTAG+GGG | - | chr3.4:37410590-37410609 | MS.gene019081:intron | 40.0% |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | - | chr3.4:37410529-37410548 | MS.gene019081:intron | 40.0% |
| !! | TCTGTAGTTAGTCTTGTCTG+GGG | - | chr3.4:37410896-37410915 | MS.gene019081:intron | 40.0% |
| !!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3.4:37411199-37411218 | MS.gene019081:CDS | 40.0% |
| !!! | TTCTCTGTGGGAAGTGTTTT+TGG | - | chr3.4:37410811-37410830 | MS.gene019081:intron | 40.0% |
| AAAATCCGCACCCCAAGATT+AGG | + | chr3.4:37410965-37410984 | None:intergenic | 45.0% | |
| AAGACGTTTCAGTGCATGTC+CGG | - | chr3.4:37411114-37411133 | MS.gene019081:CDS | 45.0% | |
| AAGGTGAAGAGGAAGAGGAA+GGG | - | chr3.4:37410326-37410345 | MS.gene019081:intron | 45.0% | |
| AGCGATACCACGTTTACGAT+AGG | + | chr3.4:37410392-37410411 | None:intergenic | 45.0% | |
| AGGCGAAACCAATTCTCTGT+GGG | - | chr3.4:37410799-37410818 | MS.gene019081:intron | 45.0% | |
| ATAGGGAGGCGATACTAAAG+TGG | + | chr3.4:37410357-37410376 | None:intergenic | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | - | chr3.4:37410775-37410794 | MS.gene019081:intron | 45.0% | |
| CACCATACCTATCGTAAACG+TGG | - | chr3.4:37410382-37410401 | MS.gene019081:intron | 45.0% | |
| TAGCGTATAGGGTGTGGTAT+AGG | - | chr3.4:37410517-37410536 | MS.gene019081:intron | 45.0% | |
| TGTTTCCTAATCTTGGGGTG+CGG | - | chr3.4:37410957-37410976 | MS.gene019081:intron | 45.0% | |
| TTACACACTTCACGAGGTGA+AGG | - | chr3.4:37411178-37411197 | MS.gene019081:CDS | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | - | chr3.4:37410776-37410795 | MS.gene019081:intron | 45.0% | |
| TTTCGCCTCCCACTCATAAA+GGG | + | chr3.4:37410787-37410806 | None:intergenic | 45.0% | |
| ! | TGAGTTGTTTCGTTAGGGGT+GGG | - | chr3.4:37410594-37410613 | MS.gene019081:intron | 45.0% |
| ! | TTGAGTTGTTTCGTTAGGGG+TGG | - | chr3.4:37410593-37410612 | MS.gene019081:intron | 45.0% |
| !! | CACTTGTGGGTTAGCGTATA+GGG | - | chr3.4:37410506-37410525 | MS.gene019081:intron | 45.0% |
| !! | CTTTTCCATGGTGTTTTGGG+CGG | + | chr3.4:37410431-37410450 | None:intergenic | 45.0% |
| !! | TCACTTGTGGGTTAGCGTAT+AGG | - | chr3.4:37410505-37410524 | MS.gene019081:intron | 45.0% |
| AAGAGCAACTCTGCAGCTCT+TGG | - | chr3.4:37411137-37411156 | MS.gene019081:CDS | 50.0% | |
| AAGGTCTGTACAACAGCTGC+CGG | + | chr3.4:37411012-37411031 | None:intergenic | 50.0% | |
| AGGAGGACGCTATTGTCTTG+AGG | - | chr3.4:37411219-37411238 | MS.gene019081:CDS | 50.0% | |
| CGCCCAAAACACCATGGAAA+AGG | - | chr3.4:37410429-37410448 | MS.gene019081:intron | 50.0% | |
| CTCGTTACTCGCCCGAATAT+TGG | - | chr3.4:37410232-37410251 | MS.gene019081:CDS | 50.0% | |
| CTTCCTCTTCACCTTCAGAG+AGG | + | chr3.4:37410321-37410340 | None:intergenic | 50.0% | |
| GAAGGTGAAGAGGAAGAGGA+AGG | - | chr3.4:37410325-37410344 | MS.gene019081:intron | 50.0% | |
| GAGGCGAAACCAATTCTCTG+TGG | - | chr3.4:37410798-37410817 | MS.gene019081:intron | 50.0% | |
| GCCCGAATATTGGCACATTG+TGG | - | chr3.4:37410242-37410261 | MS.gene019081:CDS | 50.0% | |
| GGTATGGTGAACGAATAGGG+AGG | + | chr3.4:37410371-37410390 | None:intergenic | 50.0% | |
| GGTTCTCTCTACCTTGAGAC+CGG | - | chr3.4:37410990-37411009 | MS.gene019081:CDS | 50.0% | |
| GTTGCTTACCTCCTCTCTGA+AGG | - | chr3.4:37410307-37410326 | MS.gene019081:CDS | 50.0% | |
| GTTTCGCCTCCCACTCATAA+AGG | + | chr3.4:37410788-37410807 | None:intergenic | 50.0% | |
| TTCACCGAAGAACCACTTCC+AGG | + | chr3.4:37410745-37410764 | None:intergenic | 50.0% | |
| TTGTTTCGTTAGGGGTGGGA+AGG | - | chr3.4:37410598-37410617 | MS.gene019081:intron | 50.0% | |
| ! | CTCTGAAGGTGAAGAGGAAG+AGG | - | chr3.4:37410321-37410340 | MS.gene019081:intron | 50.0% |
| ! | TTGGGGTGCGGATTTTCTCT+AGG | - | chr3.4:37410969-37410988 | MS.gene019081:intron | 50.0% |
| !! | GATGGGTTACACACTTCACG+AGG | - | chr3.4:37411172-37411191 | MS.gene019081:CDS | 50.0% |
| CATGTCGCGGACAATTGCAG+CGG | - | chr3.4:37410277-37410296 | MS.gene019081:CDS | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | - | chr3.4:37410779-37410798 | MS.gene019081:intron | 55.0% | |
| CCTCCCACTCATAAAGGGAG+TGG | + | chr3.4:37410782-37410801 | None:intergenic | 55.0% | |
| CCTCTTCACCTTCAGAGAGG+AGG | + | chr3.4:37410318-37410337 | None:intergenic | 55.0% | |
| GAGCTGCAGAGTTGCTCTTC+CGG | + | chr3.4:37411136-37411155 | None:intergenic | 55.0% | |
| TACAACAGCTGCCGGTCTCA+AGG | + | chr3.4:37411004-37411023 | None:intergenic | 55.0% | |
| ! | CCTCCTCTCTGAAGGTGAAG+AGG | - | chr3.4:37410315-37410334 | MS.gene019081:intron | 55.0% |
| !! | GTCTTGTCTGGGGAGTGTTC+TGG | - | chr3.4:37410906-37410925 | MS.gene019081:intron | 55.0% |
| !! | GTGGGTTAGCGTATAGGGTG+TGG | - | chr3.4:37410511-37410530 | MS.gene019081:intron | 55.0% |
| !! | TTCCATGGTGTTTTGGGCGG+CGG | + | chr3.4:37410428-37410447 | None:intergenic | 55.0% |
| GTGGGAAGGCAGAGTAGGCT+AGG | - | chr3.4:37410612-37410631 | MS.gene019081:intron | 60.0% | |
| TAGGGGTGGGAAGGCAGAGT+AGG | - | chr3.4:37410607-37410626 | MS.gene019081:intron | 60.0% | |
| CACCGCCGCCCAAAACACCA+TGG | - | chr3.4:37410423-37410442 | MS.gene019081:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 37410160 | 37411274 | 37410160 | ID=MS.gene019081 |
| chr3.4 | mRNA | 37410160 | 37411274 | 37410160 | ID=MS.gene019081.t1;Parent=MS.gene019081 |
| chr3.4 | exon | 37410984 | 37411274 | 37410984 | ID=MS.gene019081.t1.exon1;Parent=MS.gene019081.t1 |
| chr3.4 | CDS | 37410984 | 37411274 | 37410984 | ID=cds.MS.gene019081.t1;Parent=MS.gene019081.t1 |
| chr3.4 | exon | 37410160 | 37410330 | 37410160 | ID=MS.gene019081.t1.exon2;Parent=MS.gene019081.t1 |
| chr3.4 | CDS | 37410160 | 37410330 | 37410160 | ID=cds.MS.gene019081.t1;Parent=MS.gene019081.t1 |
| Gene Sequence |
| Protein sequence |
