Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51687.t1 | KEH33239.1 | 65.5 | 148 | 28 | 2 | 1 | 125 | 8 | 155 | 2.40E-40 | 174.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51687.t1 | Q9FKI4 | 35.7 | 154 | 60 | 5 | 6 | 121 | 2 | 154 | 2.4e-09 | 63.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51687.t1 | A0A072UTR7 | 65.5 | 148 | 28 | 2 | 1 | 125 | 8 | 155 | 1.7e-40 | 174.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51687 | MS.gene029242 | PPI |
| MS.gene51687 | MS.gene41916 | PPI |
| MS.gene51687 | MS.gene025927 | PPI |
| MS.gene51687 | MS.gene038837 | PPI |
| MS.gene51687 | MS.gene004214 | PPI |
| MS.gene51687 | MS.gene001986 | PPI |
| MS.gene51687 | MS.gene38111 | PPI |
| MS.gene51687 | MS.gene047400 | PPI |
| MS.gene036800 | MS.gene51687 | PPI |
| MS.gene51687 | MS.gene77827 | PPI |
| MS.gene59047 | MS.gene51687 | PPI |
| MS.gene51687 | MS.gene054186 | PPI |
| MS.gene51687 | MS.gene045843 | PPI |
| MS.gene51687 | MS.gene024463 | PPI |
| MS.gene51687 | MS.gene056257 | PPI |
| MS.gene51687 | MS.gene65650 | PPI |
| MS.gene51687 | MS.gene067362 | PPI |
| MS.gene51687 | MS.gene037362 | PPI |
| MS.gene059422 | MS.gene51687 | PPI |
| MS.gene51687 | MS.gene62426 | PPI |
| MS.gene51687 | MS.gene037324 | PPI |
| MS.gene51687 | MS.gene22814 | PPI |
| MS.gene51687 | MS.gene050629 | PPI |
| MS.gene51687 | MS.gene61498 | PPI |
| MS.gene51687 | MS.gene002540 | PPI |
| MS.gene51687 | MS.gene93131 | PPI |
| MS.gene51687 | MS.gene99744 | PPI |
| MS.gene51687 | MS.gene01518 | PPI |
| MS.gene51687 | MS.gene020996 | PPI |
| MS.gene51687 | MS.gene029211 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51687.t1 | MTR_3g030055 | 65.541 | 148 | 28 | 3 | 1 | 125 | 8 | 155 | 3.60e-59 | 179 |
| MS.gene51687.t1 | MTR_3g030055 | 83.051 | 59 | 10 | 0 | 1 | 59 | 1 | 59 | 3.99e-31 | 108 |
| MS.gene51687.t1 | MTR_3g034200 | 36.538 | 156 | 60 | 5 | 6 | 123 | 2 | 156 | 1.37e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51687.t1 | AT5G13780 | 35.484 | 155 | 61 | 5 | 6 | 122 | 2 | 155 | 1.76e-14 | 66.6 |
Find 27 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGTTACTCGCCCGGATAT+TGG | 0.342145 | 3.4:-5872754 | MS.gene51687:CDS |
| GAGCTGCAGAGCTGCTCTTC+CGG | 0.343101 | 3.4:+5871297 | None:intergenic |
| TCATGGTTTGTTTGAGAAGA+TGG | 0.355483 | 3.4:-5871276 | MS.gene51687:CDS |
| TCACACAATGTGCCAATATC+CGG | 0.372878 | 3.4:+5872742 | None:intergenic |
| CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3.4:+5871229 | None:intergenic |
| CAATTAGAGACATATTAGAT+TGG | 0.477630 | 3.4:-5872792 | MS.gene51687:CDS |
| CATGGTTTGTTTGAGAAGAT+GGG | 0.488586 | 3.4:-5871275 | MS.gene51687:CDS |
| TGATTGAAGGTGGGTGCTAA+AGG | 0.495589 | 3.4:-5871335 | MS.gene51687:intron |
| CACACAATGTGCCAATATCC+GGG | 0.495825 | 3.4:+5872743 | None:intergenic |
| AAGGTGTCTTAGTGCACGTC+CGG | 0.505450 | 3.4:-5871316 | MS.gene51687:CDS |
| AAGGTCTGTACAACAGCTGC+AGG | 0.508594 | 3.4:+5871421 | None:intergenic |
| GTTGCTTATGTCCTCTCTGA+AGG | 0.513246 | 3.4:-5872679 | MS.gene51687:CDS |
| AGTAACAATGTCGTCAAAGA+AGG | 0.537395 | 3.4:-5872833 | None:intergenic |
| CAACAATCTCGTTACTCGCC+CGG | 0.548408 | 3.4:-5872761 | MS.gene51687:CDS |
| TACAACAGCTGCAGGTCTCA+AGG | 0.552542 | 3.4:+5871429 | None:intergenic |
| GTCTTGAGGAAGATACTCAA+GGG | 0.554037 | 3.4:-5871197 | MS.gene51687:CDS |
| AAGAGCAGCTCTGCAGCTCA+TGG | 0.554652 | 3.4:-5871293 | MS.gene51687:CDS |
| TGTCTTGAGGAAGATACTCA+AGG | 0.562517 | 3.4:-5871198 | MS.gene51687:CDS |
| TTACACACTTCTCGAGGTGA+AGG | 0.585920 | 3.4:-5871252 | MS.gene51687:CDS |
| TGTCCTCTCTGAAGGTGAAG+AGG | 0.587441 | 3.4:-5872671 | MS.gene51687:intron |
| AGGAGGACGCTATTGTCTTG+AGG | 0.615172 | 3.4:-5871211 | MS.gene51687:CDS |
| GAGTGGGTCTCACAGTTAGG+TGG | 0.634645 | 3.4:+5871163 | None:intergenic |
| CACGTCGCGGACGATTGCAG+CGG | 0.650360 | 3.4:-5872709 | MS.gene51687:CDS |
| TCTTGAGGAAGATACTCAAG+GGG | 0.688967 | 3.4:-5871196 | MS.gene51687:CDS |
| GATGGGTTACACACTTCTCG+AGG | 0.699417 | 3.4:-5871258 | MS.gene51687:CDS |
| TGAAAAGCTTCTTCACGTCG+CGG | 0.707390 | 3.4:-5872722 | MS.gene51687:CDS |
| CTACCTCTTCACCTTCAGAG+AGG | 0.722508 | 3.4:+5872668 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAACATTATTTTTGTTT+TGG | - | chr3.4:5871757-5871776 | MS.gene51687:intron | 10.0% |
| !! | AAAATACATATACATAAATG+TGG | + | chr3.4:5871687-5871706 | None:intergenic | 15.0% |
| !! | AAATACATATACATAAATGT+GGG | + | chr3.4:5871686-5871705 | None:intergenic | 15.0% |
| !!! | ATTTATGTATATGTATTTTG+TGG | - | chr3.4:5871688-5871707 | MS.gene51687:intron | 15.0% |
| !!! | ATTTTGTTCATTTTTTGATA+AGG | - | chr3.4:5871563-5871582 | MS.gene51687:intron | 15.0% |
| !!! | TTTTGTTCATTTTTTGATAA+GGG | - | chr3.4:5871564-5871583 | MS.gene51687:intron | 15.0% |
| !! | AATACATATACATAAATGTG+GGG | + | chr3.4:5871685-5871704 | None:intergenic | 20.0% |
| !!! | AATGAAAATTTTTAGCCTTT+TGG | + | chr3.4:5871652-5871671 | None:intergenic | 20.0% |
| !!! | ATAATCTTGTTTTTTGGATT+AGG | - | chr3.4:5872055-5872074 | MS.gene51687:intron | 20.0% |
| !!! | ATGAAAATTTTTAGCCTTTT+GGG | + | chr3.4:5871651-5871670 | None:intergenic | 20.0% |
| !!! | TATGTATGGAGTTATTTTAA+TGG | - | chr3.4:5872130-5872149 | MS.gene51687:intron | 20.0% |
| !!! | TCTGTTATAATCTTGTTTTT+TGG | - | chr3.4:5872049-5872068 | MS.gene51687:intron | 20.0% |
| ! | AATACCAAGGTTATCAAAAT+CGG | + | chr3.4:5871933-5871952 | None:intergenic | 25.0% |
| ! | ACAACCAAAAACATCAAAAA+AGG | + | chr3.4:5872605-5872624 | None:intergenic | 25.0% |
| ! | ATACATATACATAAATGTGG+GGG | + | chr3.4:5871684-5871703 | None:intergenic | 25.0% |
| ! | CAATTAGAGACATATTAGAT+TGG | - | chr3.4:5871212-5871231 | MS.gene51687:CDS | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | + | chr3.4:5872510-5872529 | None:intergenic | 25.0% |
| ! | TACAAAAAGTCGCAAAAATT+AGG | + | chr3.4:5871420-5871439 | None:intergenic | 25.0% |
| !!! | ATAGGATTTTGTCTGTTTTT+GGG | + | chr3.4:5871472-5871491 | None:intergenic | 25.0% |
| !!! | ATGGAGTTATTTTAATGGTT+AGG | - | chr3.4:5872135-5872154 | MS.gene51687:intron | 25.0% |
| !!! | TTATGTAGTTAGTCTTGTAT+GGG | - | chr3.4:5872469-5872488 | MS.gene51687:intron | 25.0% |
| !!! | TTTATGTAGTTAGTCTTGTA+TGG | - | chr3.4:5872468-5872487 | MS.gene51687:intron | 25.0% |
| !!! | TTTCGTTTTGTTAGTGATTT+TGG | - | chr3.4:5872426-5872445 | MS.gene51687:intron | 25.0% |
| AAAATCGCAATCAAAATCGA+AGG | + | chr3.4:5871788-5871807 | None:intergenic | 30.0% | |
| AACAATGAGCAATACTAAAG+TGG | + | chr3.4:5871369-5871388 | None:intergenic | 30.0% | |
| ACACTGTGTAATTTGATTGA+AGG | - | chr3.4:5872656-5872675 | MS.gene51687:intron | 30.0% | |
| ACAGTGTAACAGACTATTAA+TGG | + | chr3.4:5872643-5872662 | None:intergenic | 30.0% | |
| ACGTTCTATAAATACCCAAA+AGG | - | chr3.4:5871634-5871653 | MS.gene51687:intron | 30.0% | |
| AGAAAACAGAAAATCACCAT+GGG | + | chr3.4:5872254-5872273 | None:intergenic | 30.0% | |
| ATAAAGAAACAAACCTTCCA+TGG | + | chr3.4:5872029-5872048 | None:intergenic | 30.0% | |
| ATACCAAGGTTATCAAAATC+GGG | + | chr3.4:5871932-5871951 | None:intergenic | 30.0% | |
| TAAAATCGCAATCAAAATCG+AGG | + | chr3.4:5871789-5871808 | None:intergenic | 30.0% | |
| TCCATACATAACCAGTTAAA+AGG | + | chr3.4:5872120-5872139 | None:intergenic | 30.0% | |
| TGTGTAATTTGATTGAAGGT+GGG | - | chr3.4:5872660-5872679 | MS.gene51687:intron | 30.0% | |
| ! | AGTCGCAAAAATTAGGATTT+TGG | + | chr3.4:5871413-5871432 | None:intergenic | 30.0% |
| ! | GATAGGATTTTGTCTGTTTT+TGG | + | chr3.4:5871473-5871492 | None:intergenic | 30.0% |
| ! | GTCGCAAAAATTAGGATTTT+GGG | + | chr3.4:5871412-5871431 | None:intergenic | 30.0% |
| ! | TTTCTTGTTTCCTAATCTTG+TGG | - | chr3.4:5872526-5872545 | MS.gene51687:intron | 30.0% |
| !! | TATGTAGTTAGTCTTGTATG+GGG | - | chr3.4:5872470-5872489 | MS.gene51687:intron | 30.0% |
| !!! | AGGATTTTGATGGATTTTGA+AGG | - | chr3.4:5871540-5871559 | MS.gene51687:intron | 30.0% |
| !!! | CAGACCTTTTTTGATGTTTT+TGG | - | chr3.4:5872598-5872617 | MS.gene51687:intron | 30.0% |
| AACCAAAAGAAAAATCTCGG+AGG | + | chr3.4:5872507-5872526 | None:intergenic | 35.0% | |
| AACGTGTCATGGATTCAAAT+CGG | + | chr3.4:5871619-5871638 | None:intergenic | 35.0% | |
| CAGAAAACAGAAAATCACCA+TGG | + | chr3.4:5872255-5872274 | None:intergenic | 35.0% | |
| CTAGGATTATCATCTATTCC+TGG | - | chr3.4:5872297-5872316 | MS.gene51687:intron | 35.0% | |
| CTCCTCATCATCAAAATACT+TGG | + | chr3.4:5872778-5872797 | None:intergenic | 35.0% | |
| CTGTGTAATTTGATTGAAGG+TGG | - | chr3.4:5872659-5872678 | MS.gene51687:intron | 35.0% | |
| GACTTTACTTCAAGTCGAAA+GGG | + | chr3.4:5871910-5871929 | None:intergenic | 35.0% | |
| GACTTTAGTAGAATCGATGT+AGG | + | chr3.4:5871831-5871850 | None:intergenic | 35.0% | |
| GGTATTTATAGAACGTGTCA+TGG | + | chr3.4:5871630-5871649 | None:intergenic | 35.0% | |
| TAATGGTTAGGTATGAAGCT+TGG | - | chr3.4:5872147-5872166 | MS.gene51687:intron | 35.0% | |
| TACCACGTTTATGATAGGTA+TGG | + | chr3.4:5871973-5871992 | None:intergenic | 35.0% | |
| TCGATTCTACTAAAGTCCTT+GGG | - | chr3.4:5871834-5871853 | MS.gene51687:intron | 35.0% | |
| TGAAATCCATTCAAAATCGC+AGG | - | chr3.4:5871520-5871539 | MS.gene51687:intron | 35.0% | |
| TTATCATCTATTCCTGGAAG+TGG | - | chr3.4:5872303-5872322 | MS.gene51687:intron | 35.0% | |
| ! | AAATCGAAGGATTTTACCCA+AGG | + | chr3.4:5871853-5871872 | None:intergenic | 35.0% |
| ! | ATCGATTCTACTAAAGTCCT+TGG | - | chr3.4:5871833-5871852 | MS.gene51687:intron | 35.0% |
| ! | CAAAATCCTGCGATTTTGAA+TGG | + | chr3.4:5871529-5871548 | None:intergenic | 35.0% |
| ! | CATGGTGATTTTCTGTTTTC+TGG | - | chr3.4:5872253-5872272 | MS.gene51687:intron | 35.0% |
| ! | TCAAAATCGCAGGATTTTGA+TGG | - | chr3.4:5871530-5871549 | MS.gene51687:intron | 35.0% |
| !! | CATGGTTTGTTTGAGAAGAT+GGG | - | chr3.4:5872729-5872748 | MS.gene51687:CDS | 35.0% |
| !! | CGATTTTGTGCGATTTTGAT+AGG | + | chr3.4:5871490-5871509 | None:intergenic | 35.0% |
| !! | CGTTTTGTTAGTGATTTTGG+TGG | - | chr3.4:5872429-5872448 | MS.gene51687:intron | 35.0% |
| !! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3.4:5872116-5872135 | MS.gene51687:intron | 35.0% |
| !! | TCATGGTTTGTTTGAGAAGA+TGG | - | chr3.4:5872728-5872747 | MS.gene51687:CDS | 35.0% |
| !! | TGTTAGTGATTTTGGTGGTT+GGG | - | chr3.4:5872434-5872453 | MS.gene51687:intron | 35.0% |
| !! | TTGTTAGTGATTTTGGTGGT+TGG | - | chr3.4:5872433-5872452 | MS.gene51687:intron | 35.0% |
| !!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3.4:5872776-5872795 | MS.gene51687:CDS | 35.0% |
| !!! | TAGGATTTTGGGACTTAAGT+CGG | + | chr3.4:5871401-5871420 | None:intergenic | 35.0% |
| AAAATCCGCACCACAAGATT+AGG | + | chr3.4:5872539-5872558 | None:intergenic | 40.0% | |
| AATCGGGTCAATTTACGAAC+TGG | + | chr3.4:5871602-5871621 | None:intergenic | 40.0% | |
| AATCTGAGTTTCACTAGGCT+AGG | - | chr3.4:5872279-5872298 | MS.gene51687:intron | 40.0% | |
| ACGTGTCATGGATTCAAATC+GGG | + | chr3.4:5871618-5871637 | None:intergenic | 40.0% | |
| AGCGATACCACGTTTATGAT+AGG | + | chr3.4:5871978-5871997 | None:intergenic | 40.0% | |
| AGGCAAAACCAATTCTCTGT+GGG | - | chr3.4:5872372-5872391 | MS.gene51687:intron | 40.0% | |
| ATAGGTATGGTGAACGAAGA+GGG | + | chr3.4:5871960-5871979 | None:intergenic | 40.0% | |
| ATCGGGTCAATTTACGAACT+GGG | + | chr3.4:5871601-5871620 | None:intergenic | 40.0% | |
| CACCATACCTATCATAAACG+TGG | - | chr3.4:5871968-5871987 | MS.gene51687:intron | 40.0% | |
| CTGTGTGATCTATAAACCCA+TGG | - | chr3.4:5872235-5872254 | MS.gene51687:intron | 40.0% | |
| GGACTTTACTTCAAGTCGAA+AGG | + | chr3.4:5871911-5871930 | None:intergenic | 40.0% | |
| GGTAGAATCTGAGTTTCACT+AGG | - | chr3.4:5872274-5872293 | MS.gene51687:intron | 40.0% | |
| GTCTTGAGGAAGATACTCAA+GGG | - | chr3.4:5872807-5872826 | MS.gene51687:CDS | 40.0% | |
| GTTAGGTATGAAGCTTGGTT+CGG | - | chr3.4:5872152-5872171 | MS.gene51687:intron | 40.0% | |
| TAAAGGGAGTGGCAATGATT+CGG | + | chr3.4:5872344-5872363 | None:intergenic | 40.0% | |
| TAGTGTATAGGGTGTGGTAT+AGG | - | chr3.4:5872094-5872113 | MS.gene51687:intron | 40.0% | |
| TATTCCTGGAAGTGGTTCTT+CGG | - | chr3.4:5872311-5872330 | MS.gene51687:intron | 40.0% | |
| TCACACAATGTGCCAATATC+CGG | + | chr3.4:5871265-5871284 | None:intergenic | 40.0% | |
| TCGAAAGGGAGTAGCAAAAT+CGG | + | chr3.4:5871896-5871915 | None:intergenic | 40.0% | |
| TCGATGTAGGATAGCAAAGT+CGG | + | chr3.4:5871818-5871837 | None:intergenic | 40.0% | |
| TCTTGAGGAAGATACTCAAG+GGG | - | chr3.4:5872808-5872827 | MS.gene51687:CDS | 40.0% | |
| TGGGTTTATAGATCACACAG+TGG | + | chr3.4:5872235-5872254 | None:intergenic | 40.0% | |
| TGTCTTGAGGAAGATACTCA+AGG | - | chr3.4:5872806-5872825 | MS.gene51687:CDS | 40.0% | |
| TGTTTCCTAATCTTGTGGTG+CGG | - | chr3.4:5872531-5872550 | MS.gene51687:intron | 40.0% | |
| ! | CAAACCTTCCATGGTGTTTT+TGG | + | chr3.4:5872020-5872039 | None:intergenic | 40.0% |
| ! | CACTTGTCGGTTAGTGTATA+GGG | - | chr3.4:5872083-5872102 | MS.gene51687:intron | 40.0% |
| ! | GGATTAGGTTTGTCACTTGT+CGG | - | chr3.4:5872070-5872089 | MS.gene51687:intron | 40.0% |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | - | chr3.4:5872502-5872521 | MS.gene51687:intron | 40.0% |
| ! | TCACTTGTCGGTTAGTGTAT+AGG | - | chr3.4:5872082-5872101 | MS.gene51687:intron | 40.0% |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | - | chr3.4:5872106-5872125 | MS.gene51687:intron | 40.0% |
| ! | TTTTGCCTCCCACTCATAAA+GGG | + | chr3.4:5872360-5872379 | None:intergenic | 40.0% |
| !! | AGTCCCGATTTTGATAACCT+TGG | - | chr3.4:5871926-5871945 | MS.gene51687:intron | 40.0% |
| !! | GTTAGTGATTTTGGTGGTTG+GGG | - | chr3.4:5872435-5872454 | MS.gene51687:intron | 40.0% |
| !! | TTGGTTCGGTTGTTTCGTTA+GGG | - | chr3.4:5872166-5872185 | MS.gene51687:intron | 40.0% |
| !!! | AGGATTTTGGGACTTAAGTC+GGG | + | chr3.4:5871400-5871419 | None:intergenic | 40.0% |
| !!! | CTGTTTTTGGGACTTTGCTA+TGG | + | chr3.4:5871460-5871479 | None:intergenic | 40.0% |
| !!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3.4:5872773-5872792 | MS.gene51687:CDS | 40.0% |
| AAAGGGAGTGGCAATGATTC+GGG | + | chr3.4:5872343-5872362 | None:intergenic | 45.0% | |
| AACACTTCCCCACAGAGAAT+TGG | + | chr3.4:5872383-5872402 | None:intergenic | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | - | chr3.4:5872348-5872367 | MS.gene51687:intron | 45.0% | |
| CACACAATGTGCCAATATCC+GGG | + | chr3.4:5871264-5871283 | None:intergenic | 45.0% | |
| CATAAACGTGGTATCGCTAC+TGG | - | chr3.4:5871980-5871999 | MS.gene51687:intron | 45.0% | |
| CGAAAGGGAGTAGCAAAATC+GGG | + | chr3.4:5871895-5871914 | None:intergenic | 45.0% | |
| CGATGTAGGATAGCAAAGTC+GGG | + | chr3.4:5871817-5871836 | None:intergenic | 45.0% | |
| GAGGCAAAACCAATTCTCTG+TGG | - | chr3.4:5872371-5872390 | MS.gene51687:intron | 45.0% | |
| GATAGGTATGGTGAACGAAG+AGG | + | chr3.4:5871961-5871980 | None:intergenic | 45.0% | |
| GGCAAAACCAATTCTCTGTG+GGG | - | chr3.4:5872373-5872392 | MS.gene51687:intron | 45.0% | |
| GTTGCTTATGTCCTCTCTGA+AGG | - | chr3.4:5871325-5871344 | MS.gene51687:CDS | 45.0% | |
| TGAAAAGCTTCTTCACGTCG+CGG | - | chr3.4:5871282-5871301 | MS.gene51687:CDS | 45.0% | |
| TGATTGAAGGTGGGTGCTAA+AGG | - | chr3.4:5872669-5872688 | MS.gene51687:intron | 45.0% | |
| TTACACACTTCTCGAGGTGA+AGG | - | chr3.4:5872752-5872771 | MS.gene51687:CDS | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | - | chr3.4:5872349-5872368 | MS.gene51687:intron | 45.0% | |
| ! | GTTTTGCCTCCCACTCATAA+AGG | + | chr3.4:5872361-5872380 | None:intergenic | 45.0% |
| ! | TCTCTGAAGGTGAAGAGGTA+GGG | - | chr3.4:5871338-5871357 | MS.gene51687:intron | 45.0% |
| ! | TTGTGGTGCGGATTTTCTCT+AGG | - | chr3.4:5872543-5872562 | MS.gene51687:intron | 45.0% |
| !! | CTTGGTTCGGTTGTTTCGTT+AGG | - | chr3.4:5872165-5872184 | MS.gene51687:intron | 45.0% |
| !! | TGGTTCGGTTGTTTCGTTAG+GGG | - | chr3.4:5872167-5872186 | MS.gene51687:intron | 45.0% |
| !!! | ACCTTCCATGGTGTTTTTGG+CGG | + | chr3.4:5872017-5872036 | None:intergenic | 45.0% |
| !!! | TCTCTGTGGGGAAGTGTTTT+TGG | - | chr3.4:5872385-5872404 | MS.gene51687:intron | 45.0% |
| AAGGTCTGTACAACAGCTGC+AGG | + | chr3.4:5872586-5872605 | None:intergenic | 50.0% | |
| AGGAGGACGCTATTGTCTTG+AGG | - | chr3.4:5872793-5872812 | MS.gene51687:CDS | 50.0% | |
| CAACAATCTCGTTACTCGCC+CGG | - | chr3.4:5871243-5871262 | MS.gene51687:CDS | 50.0% | |
| CGAAGAGGGAAGCAATACCA+AGG | + | chr3.4:5871946-5871965 | None:intergenic | 50.0% | |
| CTACCTCTTCACCTTCAGAG+AGG | + | chr3.4:5871339-5871358 | None:intergenic | 50.0% | |
| GAAGGTGAAGAGGTAGGGAA+TGG | - | chr3.4:5871343-5871362 | MS.gene51687:intron | 50.0% | |
| GTCGGTTAGTGTATAGGGTG+TGG | - | chr3.4:5872088-5872107 | MS.gene51687:intron | 50.0% | |
| TACAACAGCTGCAGGTCTCA+AGG | + | chr3.4:5872578-5872597 | None:intergenic | 50.0% | |
| TTCACCGAAGAACCACTTCC+AGG | + | chr3.4:5872318-5872337 | None:intergenic | 50.0% | |
| TTGTTTCGTTAGGGGTGGGA+AGG | - | chr3.4:5872175-5872194 | MS.gene51687:intron | 50.0% | |
| ! | AAGGTGTCTTAGTGCACGTC+CGG | - | chr3.4:5872688-5872707 | MS.gene51687:CDS | 50.0% |
| ! | CTCTCTGAAGGTGAAGAGGT+AGG | - | chr3.4:5871337-5871356 | MS.gene51687:intron | 50.0% |
| ! | TCGGTTGTTTCGTTAGGGGT+GGG | - | chr3.4:5872171-5872190 | MS.gene51687:intron | 50.0% |
| ! | TGTCCTCTCTGAAGGTGAAG+AGG | - | chr3.4:5871333-5871352 | MS.gene51687:intron | 50.0% |
| ! | TTCGGTTGTTTCGTTAGGGG+TGG | - | chr3.4:5872170-5872189 | MS.gene51687:intron | 50.0% |
| !! | GATGGGTTACACACTTCTCG+AGG | - | chr3.4:5872746-5872765 | MS.gene51687:CDS | 50.0% |
| !! | GTCTTGTATGGGGAGTGTTC+TGG | - | chr3.4:5872480-5872499 | MS.gene51687:intron | 50.0% |
| !!! | TTCCATGGTGTTTTTGGCGG+CGG | + | chr3.4:5872014-5872033 | None:intergenic | 50.0% |
| AAGAGCAGCTCTGCAGCTCA+TGG | - | chr3.4:5872711-5872730 | MS.gene51687:CDS | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | - | chr3.4:5872352-5872371 | MS.gene51687:intron | 55.0% | |
| CCTCCCACTCATAAAGGGAG+TGG | + | chr3.4:5872355-5872374 | None:intergenic | 55.0% | |
| CTCGTTACTCGCCCGGATAT+TGG | - | chr3.4:5871250-5871269 | MS.gene51687:CDS | 55.0% | |
| GCCGCCAAAAACACCATGGA+AGG | - | chr3.4:5872013-5872032 | MS.gene51687:intron | 55.0% | |
| CACCGCCGCCAAAAACACCA+TGG | - | chr3.4:5872009-5872028 | MS.gene51687:intron | 60.0% | |
| GAGCTGCAGAGCTGCTCTTC+CGG | + | chr3.4:5872710-5872729 | None:intergenic | 60.0% | |
| GTGGGAAGGCAGAGTAGGCT+AGG | - | chr3.4:5872189-5872208 | MS.gene51687:intron | 60.0% | |
| TAGGGGTGGGAAGGCAGAGT+AGG | - | chr3.4:5872184-5872203 | MS.gene51687:intron | 60.0% | |
| CACGTCGCGGACGATTGCAG+CGG | - | chr3.4:5871295-5871314 | MS.gene51687:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 5871178 | 5872848 | 5871178 | ID=MS.gene51687 |
| chr3.4 | mRNA | 5871178 | 5872848 | 5871178 | ID=MS.gene51687.t1;Parent=MS.gene51687 |
| chr3.4 | exon | 5872672 | 5872848 | 5872672 | ID=MS.gene51687.t1.exon1;Parent=MS.gene51687.t1 |
| chr3.4 | CDS | 5872672 | 5872848 | 5872672 | ID=cds.MS.gene51687.t1;Parent=MS.gene51687.t1 |
| chr3.4 | exon | 5871432 | 5871461 | 5871432 | ID=MS.gene51687.t1.exon2;Parent=MS.gene51687.t1 |
| chr3.4 | CDS | 5871432 | 5871461 | 5871432 | ID=cds.MS.gene51687.t1;Parent=MS.gene51687.t1 |
| chr3.4 | exon | 5871178 | 5871348 | 5871178 | ID=MS.gene51687.t1.exon3;Parent=MS.gene51687.t1 |
| chr3.4 | CDS | 5871178 | 5871348 | 5871178 | ID=cds.MS.gene51687.t1;Parent=MS.gene51687.t1 |
| Gene Sequence |
| Protein sequence |
