Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009509.t1 | KEH33239.1 | 76.2 | 164 | 30 | 2 | 1 | 164 | 1 | 155 | 1.50E-58 | 235.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009509.t1 | Q9FKI4 | 40.3 | 159 | 78 | 5 | 13 | 160 | 2 | 154 | 1.6e-16 | 87.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009509.t1 | A0A072UTR7 | 76.2 | 164 | 30 | 2 | 1 | 164 | 1 | 155 | 1.1e-58 | 235.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene009509.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009509 | MS.gene029211 | PPI |
| MS.gene009509 | MS.gene002540 | PPI |
| MS.gene038837 | MS.gene009509 | PPI |
| MS.gene009509 | MS.gene93131 | PPI |
| MS.gene009509 | MS.gene99744 | PPI |
| MS.gene009509 | MS.gene029242 | PPI |
| MS.gene61498 | MS.gene009509 | PPI |
| MS.gene009509 | MS.gene41916 | PPI |
| MS.gene045843 | MS.gene009509 | PPI |
| MS.gene009509 | MS.gene004214 | PPI |
| MS.gene009509 | MS.gene001986 | PPI |
| MS.gene01518 | MS.gene009509 | PPI |
| MS.gene025927 | MS.gene009509 | PPI |
| MS.gene009509 | MS.gene38111 | PPI |
| MS.gene009509 | MS.gene047400 | PPI |
| MS.gene009509 | MS.gene77827 | PPI |
| MS.gene009509 | MS.gene054186 | PPI |
| MS.gene009509 | MS.gene024463 | PPI |
| MS.gene009509 | MS.gene056257 | PPI |
| MS.gene009509 | MS.gene067362 | PPI |
| MS.gene009509 | MS.gene037362 | PPI |
| MS.gene036800 | MS.gene009509 | PPI |
| MS.gene009509 | MS.gene62426 | PPI |
| MS.gene009509 | MS.gene037324 | PPI |
| MS.gene59047 | MS.gene009509 | PPI |
| MS.gene009509 | MS.gene22814 | PPI |
| MS.gene050629 | MS.gene009509 | PPI |
| MS.gene059422 | MS.gene009509 | PPI |
| MS.gene65650 | MS.gene009509 | PPI |
| MS.gene009509 | MS.gene020996 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009509.t1 | MTR_3g030055 | 80.488 | 164 | 23 | 2 | 1 | 164 | 1 | 155 | 2.38e-89 | 258 |
| MS.gene009509.t1 | MTR_3g030055 | 82.353 | 102 | 12 | 1 | 8 | 109 | 1 | 96 | 1.07e-54 | 169 |
| MS.gene009509.t1 | MTR_3g034200 | 46.584 | 161 | 69 | 6 | 13 | 162 | 2 | 156 | 2.67e-31 | 111 |
| MS.gene009509.t1 | MTR_3g050860 | 40.496 | 121 | 65 | 3 | 44 | 162 | 37 | 152 | 6.76e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009509.t1 | AT5G13780 | 43.750 | 160 | 73 | 6 | 13 | 161 | 2 | 155 | 1.80e-27 | 102 |
Find 38 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCACAATCTGCCAATATT+CGG | 0.289319 | 3.3:-5347932 | None:intergenic |
| TGTTCCTTGTAACTGTTTCA+TGG | 0.332180 | 3.3:-5347825 | None:intergenic |
| TCCACAATCTGCCAATATTC+GGG | 0.342849 | 3.3:-5347931 | None:intergenic |
| GAGCTGCAGAGTTGCTCTTC+CGG | 0.345662 | 3.3:-5348831 | None:intergenic |
| TCTTGGTTTGTTTGAAAAGA+TGG | 0.363394 | 3.3:+5348852 | MS.gene009509:CDS |
| AGAGGAAGTGGAAGAGGAAG+AGG | 0.396334 | 3.3:+5348015 | MS.gene009509:CDS |
| CTCGTTACTCTCCCGAATAT+TGG | 0.398957 | 3.3:+5347920 | MS.gene009509:CDS |
| AGTGGAAGAGGAAGAGGAAG+AGG | 0.420722 | 3.3:+5348021 | MS.gene009509:CDS |
| CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3.3:-5348899 | None:intergenic |
| TGCATAAGAGTCGCAACAAT+TGG | 0.433948 | 3.3:+5347866 | MS.gene009509:CDS |
| CTCTAAAGAGGAAGTGGAAG+AGG | 0.438354 | 3.3:+5348009 | MS.gene009509:CDS |
| GAAGAGGAAGAGGAAGAGGA+AGG | 0.438753 | 3.3:+5348025 | MS.gene009509:CDS |
| CGCCCAAAACACCATGGAAA+AGG | 0.453353 | 3.3:+5348129 | MS.gene009509:CDS |
| CTTGGTTTGTTTGAAAAGAT+GGG | 0.459057 | 3.3:+5348853 | MS.gene009509:CDS |
| CCTCCTCTCTAAAGAGGAAG+TGG | 0.459131 | 3.3:+5348003 | MS.gene009509:CDS |
| AACAATACAGTCGCTGCAAT+CGG | 0.461342 | 3.3:-5347975 | None:intergenic |
| AAGAGCAACTCTGCAGCTCT+TGG | 0.462439 | 3.3:+5348835 | MS.gene009509:CDS |
| TGCTTACCTCCTCTCTAAAG+AGG | 0.467882 | 3.3:+5347997 | MS.gene009509:CDS |
| CAATTGGAGAAGTATTAGAT+TGG | 0.473450 | 3.3:+5347882 | MS.gene009509:CDS |
| AAGATGTCTCGGTGCACGTC+CGG | 0.505757 | 3.3:+5348812 | MS.gene009509:CDS |
| CTTCCACTTCCTCTTTAGAG+AGG | 0.515368 | 3.3:-5348006 | None:intergenic |
| GAAGAGGAAGAGGAAGGGAA+TGG | 0.522153 | 3.3:+5348031 | MS.gene009509:CDS |
| CCACTTCCTCTTTAGAGAGG+AGG | 0.536526 | 3.3:-5348003 | None:intergenic |
| TCCCGAATATTGGCAGATTG+TGG | 0.540617 | 3.3:+5347930 | MS.gene009509:CDS |
| GAGTGGCTCTCACAGTTAGG+TGG | 0.542114 | 3.3:-5348965 | None:intergenic |
| AAGAGGAAGAGGAAGAGGAA+GGG | 0.544404 | 3.3:+5348026 | MS.gene009509:CDS |
| AGGAACAATGTCGTCAAAGA+AGG | 0.558119 | 3.3:+5347841 | MS.gene009509:CDS |
| TTACACACTTCTTGAGGTGA+AGG | 0.565558 | 3.3:+5348876 | MS.gene009509:CDS |
| ATAGGTATGGTGAACAAAGA+GGG | 0.575631 | 3.3:-5348071 | None:intergenic |
| GATGGGTTACACACTTCTTG+AGG | 0.581446 | 3.3:+5348870 | MS.gene009509:CDS |
| AGGAGGACGCTATTGTCTTG+TGG | 0.587701 | 3.3:+5348917 | MS.gene009509:CDS |
| CTAACCATGAAACAGTTACA+AGG | 0.600808 | 3.3:+5347821 | None:intergenic |
| GATAGGTATGGTGAACAAAG+AGG | 0.607709 | 3.3:-5348072 | None:intergenic |
| CACCGCCGCCCAAAACACCA+TGG | 0.620119 | 3.3:+5348123 | MS.gene009509:CDS |
| CACCATACCTATCGTAAACG+TGG | 0.628725 | 3.3:+5348082 | MS.gene009509:CDS |
| GGTGGGTGCTAAAGATGTCT+CGG | 0.629911 | 3.3:+5348801 | MS.gene009509:intron |
| TACCACGTTTACGATAGGTA+TGG | 0.651983 | 3.3:-5348084 | None:intergenic |
| AGCGATACCACGTTTACGAT+AGG | 0.681782 | 3.3:-5348089 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTGTTTTTTGGATT+AGG | + | chr3.3:5348176-5348195 | MS.gene009509:intron | 15.0% |
| !!! | TCTGTTATAATTTTGTTTTT+TGG | + | chr3.3:5348170-5348189 | MS.gene009509:intron | 15.0% |
| ! | ACATTGTAACAGACTATTAA+TGG | - | chr3.3:5348767-5348786 | None:intergenic | 25.0% |
| ! | CAACCAAAAACATCAAAAAA+AGG | - | chr3.3:5348728-5348747 | None:intergenic | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | - | chr3.3:5348633-5348652 | None:intergenic | 25.0% |
| !! | TTTCTTCTTGTTAGTGATTT+TGG | + | chr3.3:5348550-5348569 | MS.gene009509:intron | 25.0% |
| !!! | AGACCTTTTTTTGATGTTTT+TGG | + | chr3.3:5348722-5348741 | MS.gene009509:intron | 25.0% |
| ACAATGTGTAATTTGACTGA+AGG | + | chr3.3:5348780-5348799 | MS.gene009509:intron | 30.0% | |
| AGAAAACAGAAAATCATCAC+AGG | - | chr3.3:5348379-5348398 | None:intergenic | 30.0% | |
| TCCATACATAACCAGTTAAA+AGG | - | chr3.3:5348241-5348260 | None:intergenic | 30.0% | |
| ! | CTAGGATTATCTTTTATTCC+TGG | + | chr3.3:5348422-5348441 | MS.gene009509:intron | 30.0% |
| ! | TATGTATGGAGTTGGTTTAA+TGG | + | chr3.3:5348251-5348270 | MS.gene009509:intron | 30.0% |
| ! | TGTGATGATTTTCTGTTTTC+TGG | + | chr3.3:5348378-5348397 | MS.gene009509:intron | 30.0% |
| ! | TTATCTTTTATTCCTGGAAG+TGG | + | chr3.3:5348428-5348447 | MS.gene009509:intron | 30.0% |
| !! | CAATTGGAGAAGTATTAGAT+TGG | + | chr3.3:5347882-5347901 | MS.gene009509:CDS | 30.0% |
| !! | CTTGGTTTGTTTGAAAAGAT+GGG | + | chr3.3:5348853-5348872 | MS.gene009509:CDS | 30.0% |
| !! | TCTTGGTTTGTTTGAAAAGA+TGG | + | chr3.3:5348852-5348871 | MS.gene009509:CDS | 30.0% |
| !! | TTTTCTTGTTTCCTAGTCTT+GGG | + | chr3.3:5348648-5348667 | MS.gene009509:intron | 30.0% |
| AAAACACCATGGAAAAGGTT+AGG | + | chr3.3:5348134-5348153 | MS.gene009509:intron | 35.0% | |
| AACAAAAAACCTAGCCTACT+CGG | - | chr3.3:5348322-5348341 | None:intergenic | 35.0% | |
| AACCAAAAGAAAAATCTCGG+AGG | - | chr3.3:5348630-5348649 | None:intergenic | 35.0% | |
| ATAGGTATGGTGAACAAAGA+GGG | - | chr3.3:5348074-5348093 | None:intergenic | 35.0% | |
| ATGTGTAATTTGACTGAAGG+TGG | + | chr3.3:5348783-5348802 | MS.gene009509:intron | 35.0% | |
| CTCCTCATCATCAAAATACT+TGG | - | chr3.3:5348902-5348921 | None:intergenic | 35.0% | |
| TAACTGGTTATGTATGGAGT+TGG | + | chr3.3:5348243-5348262 | MS.gene009509:intron | 35.0% | |
| TAATGGTTAGGTATGAAGCT+TGG | + | chr3.3:5348268-5348287 | MS.gene009509:intron | 35.0% | |
| TGTGTAATTTGACTGAAGGT+GGG | + | chr3.3:5348784-5348803 | MS.gene009509:intron | 35.0% | |
| TTCCACAATCTGCCAATATT+CGG | - | chr3.3:5347935-5347954 | None:intergenic | 35.0% | |
| ! | AACAAACCTAACCTTTTCCA+TGG | - | chr3.3:5348143-5348162 | None:intergenic | 35.0% |
| ! | AACCTTTTCCATGGTGTTTT+GGG | - | chr3.3:5348134-5348153 | None:intergenic | 35.0% |
| ! | ATGGAGTTGGTTTAATGGTT+AGG | + | chr3.3:5348256-5348275 | MS.gene009509:intron | 35.0% |
| ! | CTTCTTGTTAGTGATTTTGG+TGG | + | chr3.3:5348553-5348572 | MS.gene009509:intron | 35.0% |
| ! | TAACCTTTTCCATGGTGTTT+TGG | - | chr3.3:5348135-5348154 | None:intergenic | 35.0% |
| ! | TTTTCAGATAGATCACACAG+TGG | - | chr3.3:5348356-5348375 | None:intergenic | 35.0% |
| !! | GCCTTTTAACTGGTTATGTA+TGG | + | chr3.3:5348237-5348256 | MS.gene009509:intron | 35.0% |
| !! | GTTTTCTTGTTTCCTAGTCT+TGG | + | chr3.3:5348647-5348666 | MS.gene009509:intron | 35.0% |
| !! | TTGTTAGTGATTTTGGTGGT+TGG | + | chr3.3:5348557-5348576 | MS.gene009509:intron | 35.0% |
| !! | TTTCTTGTTTCCTAGTCTTG+GGG | + | chr3.3:5348649-5348668 | MS.gene009509:intron | 35.0% |
| !! | TTTGTGTAGTTAGTCTTGTC+TGG | + | chr3.3:5348591-5348610 | MS.gene009509:intron | 35.0% |
| !!! | CAAGTATTTTGATGATGAGG+AGG | + | chr3.3:5348900-5348919 | MS.gene009509:CDS | 35.0% |
| AAAATCCATACCCCAAGACT+AGG | - | chr3.3:5348662-5348681 | None:intergenic | 40.0% | |
| AAACCAATTCTCTGTGGGAA+GGG | + | chr3.3:5348502-5348521 | MS.gene009509:intron | 40.0% | |
| AAAGGGAGTGGCAATGATTA+GGG | - | chr3.3:5348468-5348487 | None:intergenic | 40.0% | |
| AACAATACAGTCGCTGCAAT+CGG | - | chr3.3:5347978-5347997 | None:intergenic | 40.0% | |
| AATCTGAGTTTCACTAGGCT+AGG | + | chr3.3:5348404-5348423 | MS.gene009509:intron | 40.0% | |
| AGGAACAATGTCGTCAAAGA+AGG | + | chr3.3:5347841-5347860 | MS.gene009509:CDS | 40.0% | |
| GATAGGTATGGTGAACAAAG+AGG | - | chr3.3:5348075-5348094 | None:intergenic | 40.0% | |
| GGATTAGGTTTGTCTCTTGT+GGG | + | chr3.3:5348191-5348210 | MS.gene009509:intron | 40.0% | |
| GGTAGAATCTGAGTTTCACT+AGG | + | chr3.3:5348399-5348418 | MS.gene009509:intron | 40.0% | |
| GTTAGGTATGAAGCTTGGTT+CGG | + | chr3.3:5348273-5348292 | MS.gene009509:intron | 40.0% | |
| TAAAGGGAGTGGCAATGATT+AGG | - | chr3.3:5348469-5348488 | None:intergenic | 40.0% | |
| TACCACGTTTACGATAGGTA+TGG | - | chr3.3:5348087-5348106 | None:intergenic | 40.0% | |
| TATTCCTGGAAGTGGTTCTT+TGG | + | chr3.3:5348436-5348455 | MS.gene009509:intron | 40.0% | |
| TCCACAATCTGCCAATATTC+GGG | - | chr3.3:5347934-5347953 | None:intergenic | 40.0% | |
| TGCATAAGAGTCGCAACAAT+TGG | + | chr3.3:5347866-5347885 | MS.gene009509:CDS | 40.0% | |
| TTACACACTTCTTGAGGTGA+AGG | + | chr3.3:5348876-5348895 | MS.gene009509:CDS | 40.0% | |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | + | chr3.3:5348625-5348644 | MS.gene009509:intron | 40.0% |
| ! | TGGATTAGGTTTGTCTCTTG+TGG | + | chr3.3:5348190-5348209 | MS.gene009509:intron | 40.0% |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | + | chr3.3:5348227-5348246 | MS.gene009509:intron | 40.0% |
| ! | TTGGGGTATGGATTTTCTCT+AGG | + | chr3.3:5348666-5348685 | MS.gene009509:intron | 40.0% |
| !! | TTGGTTCGGTTGTTTCGTTA+GGG | + | chr3.3:5348287-5348306 | MS.gene009509:intron | 40.0% |
| !!! | GGCCAAGTATTTTGATGATG+AGG | + | chr3.3:5348897-5348916 | MS.gene009509:CDS | 40.0% |
| AAACCCTTCCCACAGAGAAT+TGG | - | chr3.3:5348508-5348527 | None:intergenic | 45.0% | |
| AAGAGGAAGAGGAAGAGGAA+GGG | + | chr3.3:5348026-5348045 | MS.gene009509:CDS | 45.0% | |
| AGCGATACCACGTTTACGAT+AGG | - | chr3.3:5348092-5348111 | None:intergenic | 45.0% | |
| AGGCGAAACCAATTCTCTGT+GGG | + | chr3.3:5348497-5348516 | MS.gene009509:intron | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | + | chr3.3:5348473-5348492 | MS.gene009509:intron | 45.0% | |
| CACCATACCTATCGTAAACG+TGG | + | chr3.3:5348082-5348101 | MS.gene009509:CDS | 45.0% | |
| CTCGTTACTCTCCCGAATAT+TGG | + | chr3.3:5347920-5347939 | MS.gene009509:CDS | 45.0% | |
| GAAACCAATTCTCTGTGGGA+AGG | + | chr3.3:5348501-5348520 | MS.gene009509:intron | 45.0% | |
| TAGCGTATAGGGTGTGGTAT+AGG | + | chr3.3:5348215-5348234 | MS.gene009509:intron | 45.0% | |
| TCCCGAATATTGGCAGATTG+TGG | + | chr3.3:5347930-5347949 | MS.gene009509:CDS | 45.0% | |
| TTCACCAAAGAACCACTTCC+AGG | - | chr3.3:5348443-5348462 | None:intergenic | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | + | chr3.3:5348474-5348493 | MS.gene009509:intron | 45.0% | |
| TTTCGCCTCCCACTCATAAA+GGG | - | chr3.3:5348485-5348504 | None:intergenic | 45.0% | |
| ! | CTCTAAAGAGGAAGTGGAAG+AGG | + | chr3.3:5348009-5348028 | MS.gene009509:CDS | 45.0% |
| ! | CTTCCACTTCCTCTTTAGAG+AGG | - | chr3.3:5348009-5348028 | None:intergenic | 45.0% |
| ! | GAAAAAGCTTGTTCACGTCG+CGG | + | chr3.3:5347952-5347971 | MS.gene009509:CDS | 45.0% |
| ! | TGCTTACCTCCTCTCTAAAG+AGG | + | chr3.3:5347997-5348016 | MS.gene009509:CDS | 45.0% |
| ! | TTCTCTGTGGGAAGGGTTTT+TGG | + | chr3.3:5348509-5348528 | MS.gene009509:intron | 45.0% |
| !! | CTCTTGTGGGTTAGCGTATA+GGG | + | chr3.3:5348204-5348223 | MS.gene009509:intron | 45.0% |
| !! | CTTGGTTCGGTTGTTTCGTT+AGG | + | chr3.3:5348286-5348305 | MS.gene009509:intron | 45.0% |
| !! | CTTTTCCATGGTGTTTTGGG+CGG | - | chr3.3:5348131-5348150 | None:intergenic | 45.0% |
| !! | GATGGGTTACACACTTCTTG+AGG | + | chr3.3:5348870-5348889 | MS.gene009509:CDS | 45.0% |
| !! | TCTCTTGTGGGTTAGCGTAT+AGG | + | chr3.3:5348203-5348222 | MS.gene009509:intron | 45.0% |
| !! | TGGTTCGGTTGTTTCGTTAG+GGG | + | chr3.3:5348288-5348307 | MS.gene009509:intron | 45.0% |
| !! | TGTTTCCTAGTCTTGGGGTA+TGG | + | chr3.3:5348654-5348673 | MS.gene009509:intron | 45.0% |
| AAGAGCAACTCTGCAGCTCT+TGG | + | chr3.3:5348835-5348854 | MS.gene009509:CDS | 50.0% | |
| AAGGTCTGTACAACAGCTGC+AGG | - | chr3.3:5348709-5348728 | None:intergenic | 50.0% | |
| AGAGGAAGTGGAAGAGGAAG+AGG | + | chr3.3:5348015-5348034 | MS.gene009509:CDS | 50.0% | |
| AGGAGGACGCTATTGTCTTG+TGG | + | chr3.3:5348917-5348936 | MS.gene009509:CDS | 50.0% | |
| AGTGGAAGAGGAAGAGGAAG+AGG | + | chr3.3:5348021-5348040 | MS.gene009509:CDS | 50.0% | |
| CGCCCAAAACACCATGGAAA+AGG | + | chr3.3:5348129-5348148 | MS.gene009509:CDS | 50.0% | |
| GAAGAGGAAGAGGAAGAGGA+AGG | + | chr3.3:5348025-5348044 | MS.gene009509:CDS | 50.0% | |
| GAAGAGGAAGAGGAAGGGAA+TGG | + | chr3.3:5348031-5348050 | MS.gene009509:CDS | 50.0% | |
| GAGGCGAAACCAATTCTCTG+TGG | + | chr3.3:5348496-5348515 | MS.gene009509:intron | 50.0% | |
| GGTGGGTGCTAAAGATGTCT+CGG | + | chr3.3:5348801-5348820 | MS.gene009509:intron | 50.0% | |
| GTCTTGTCTGGTGAGTGTTC+TGG | + | chr3.3:5348603-5348622 | MS.gene009509:intron | 50.0% | |
| GTTTCGCCTCCCACTCATAA+AGG | - | chr3.3:5348486-5348505 | None:intergenic | 50.0% | |
| TACAACAGCTGCAGGTCTCA+AGG | - | chr3.3:5348701-5348720 | None:intergenic | 50.0% | |
| TTGTTTCGTTAGGGGTGGGA+AGG | + | chr3.3:5348296-5348315 | MS.gene009509:intron | 50.0% | |
| ! | CCACTTCCTCTTTAGAGAGG+AGG | - | chr3.3:5348006-5348025 | None:intergenic | 50.0% |
| ! | CCTCCTCTCTAAAGAGGAAG+TGG | + | chr3.3:5348003-5348022 | MS.gene009509:CDS | 50.0% |
| ! | TCGGTTGTTTCGTTAGGGGT+GGG | + | chr3.3:5348292-5348311 | MS.gene009509:intron | 50.0% |
| ! | TTCGGTTGTTTCGTTAGGGG+TGG | + | chr3.3:5348291-5348310 | MS.gene009509:intron | 50.0% |
| CCACTCCCTTTATGAGTGGG+AGG | + | chr3.3:5348477-5348496 | MS.gene009509:intron | 55.0% | |
| CCTCCCACTCATAAAGGGAG+TGG | - | chr3.3:5348480-5348499 | None:intergenic | 55.0% | |
| GAGCTGCAGAGTTGCTCTTC+CGG | - | chr3.3:5348834-5348853 | None:intergenic | 55.0% | |
| ! | AAGATGTCTCGGTGCACGTC+CGG | + | chr3.3:5348812-5348831 | MS.gene009509:CDS | 55.0% |
| !! | GTGGGTTAGCGTATAGGGTG+TGG | + | chr3.3:5348209-5348228 | MS.gene009509:intron | 55.0% |
| !! | TTCCATGGTGTTTTGGGCGG+CGG | - | chr3.3:5348128-5348147 | None:intergenic | 55.0% |
| CACCGCCGCCCAAAACACCA+TGG | + | chr3.3:5348123-5348142 | MS.gene009509:CDS | 65.0% | |
| GTGGGAAGGCCGAGTAGGCT+AGG | + | chr3.3:5348310-5348329 | MS.gene009509:intron | 65.0% | |
| TAGGGGTGGGAAGGCCGAGT+AGG | + | chr3.3:5348305-5348324 | MS.gene009509:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 5347827 | 5348972 | 5347827 | ID=MS.gene009509 |
| chr3.3 | mRNA | 5347827 | 5348972 | 5347827 | ID=MS.gene009509.t1;Parent=MS.gene009509 |
| chr3.3 | exon | 5347827 | 5348150 | 5347827 | ID=MS.gene009509.t1.exon1;Parent=MS.gene009509.t1 |
| chr3.3 | CDS | 5347827 | 5348150 | 5347827 | ID=cds.MS.gene009509.t1;Parent=MS.gene009509.t1 |
| chr3.3 | exon | 5348802 | 5348972 | 5348802 | ID=MS.gene009509.t1.exon2;Parent=MS.gene009509.t1 |
| chr3.3 | CDS | 5348802 | 5348972 | 5348802 | ID=cds.MS.gene009509.t1;Parent=MS.gene009509.t1 |
| Gene Sequence |
| Protein sequence |
