Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51964.t1 | KEH33239.1 | 74.7 | 166 | 31 | 2 | 1 | 166 | 1 | 155 | 1.30E-57 | 232.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51964.t1 | Q9FKI4 | 41.0 | 161 | 76 | 5 | 13 | 162 | 2 | 154 | 2.5e-17 | 90.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51964.t1 | A0A072UTR7 | 74.7 | 166 | 31 | 2 | 1 | 166 | 1 | 155 | 9.3e-58 | 232.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene51964.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050629 | MS.gene51964 | PPI |
| MS.gene51964 | MS.gene22814 | PPI |
| MS.gene51964 | MS.gene029211 | PPI |
| MS.gene51964 | MS.gene002540 | PPI |
| MS.gene059422 | MS.gene51964 | PPI |
| MS.gene65650 | MS.gene51964 | PPI |
| MS.gene020996 | MS.gene51964 | PPI |
| MS.gene51964 | MS.gene93131 | PPI |
| MS.gene51964 | MS.gene99744 | PPI |
| MS.gene037324 | MS.gene51964 | PPI |
| MS.gene024463 | MS.gene51964 | PPI |
| MS.gene038837 | MS.gene51964 | PPI |
| MS.gene029242 | MS.gene51964 | PPI |
| MS.gene51964 | MS.gene004214 | PPI |
| MS.gene51964 | MS.gene001986 | PPI |
| MS.gene61498 | MS.gene51964 | PPI |
| MS.gene045843 | MS.gene51964 | PPI |
| MS.gene51964 | MS.gene38111 | PPI |
| MS.gene51964 | MS.gene047400 | PPI |
| MS.gene01518 | MS.gene51964 | PPI |
| MS.gene025927 | MS.gene51964 | PPI |
| MS.gene51964 | MS.gene41916 | PPI |
| MS.gene51964 | MS.gene77827 | PPI |
| MS.gene62426 | MS.gene51964 | PPI |
| MS.gene51964 | MS.gene037362 | PPI |
| MS.gene067362 | MS.gene51964 | PPI |
| MS.gene036800 | MS.gene51964 | PPI |
| MS.gene51964 | MS.gene054186 | PPI |
| MS.gene51964 | MS.gene056257 | PPI |
| MS.gene59047 | MS.gene51964 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51964.t1 | MTR_3g030055 | 79.518 | 166 | 23 | 2 | 1 | 166 | 1 | 155 | 2.97e-89 | 257 |
| MS.gene51964.t1 | MTR_3g030055 | 80.769 | 104 | 12 | 1 | 8 | 111 | 1 | 96 | 1.22e-54 | 169 |
| MS.gene51964.t1 | MTR_3g034200 | 47.239 | 163 | 67 | 6 | 13 | 164 | 2 | 156 | 2.16e-32 | 114 |
| MS.gene51964.t1 | MTR_3g050860 | 41.463 | 123 | 63 | 4 | 44 | 164 | 37 | 152 | 7.19e-16 | 73.9 |
| MS.gene51964.t1 | MTR_0439s0020 | 32.331 | 133 | 76 | 5 | 8 | 136 | 1 | 123 | 4.07e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51964.t1 | AT5G13780 | 44.444 | 162 | 71 | 6 | 13 | 163 | 2 | 155 | 1.06e-28 | 105 |
Find 40 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCACGATCTGCCAATATT+CGG | 0.311860 | 3.2:-4180580 | None:intergenic |
| TGTTCCTTGTAACTGTTTCA+TGG | 0.332180 | 3.2:-4180473 | None:intergenic |
| TCCACGATCTGCCAATATTC+GGG | 0.342849 | 3.2:-4180579 | None:intergenic |
| GAGCTGCAGAGTTGCTCTTC+CGG | 0.345662 | 3.2:-4181485 | None:intergenic |
| TCTTGGTTTGTTTGAAAAGA+TGG | 0.363394 | 3.2:+4181506 | MS.gene51964:CDS |
| AGAGGAAGTGGAAGAGGAAG+AGG | 0.396334 | 3.2:+4180663 | MS.gene51964:CDS |
| CTCGTTACTCTCCCGAATAT+TGG | 0.398957 | 3.2:+4180568 | MS.gene51964:CDS |
| AGTGGAAGAGGAAGAGGAAG+AGG | 0.420722 | 3.2:+4180669 | MS.gene51964:CDS |
| AACAATACAGCCGCTGCAAT+CGG | 0.422612 | 3.2:-4180623 | None:intergenic |
| AGAGGAAGAGGAAGAGGAAG+AGG | 0.426997 | 3.2:+4180675 | MS.gene51964:CDS |
| CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3.2:-4181553 | None:intergenic |
| TGCATAAGAGTCGCAACAAT+TGG | 0.433948 | 3.2:+4180514 | MS.gene51964:CDS |
| CTCTAAAGAGGAAGTGGAAG+AGG | 0.438354 | 3.2:+4180657 | MS.gene51964:CDS |
| GAAGAGGAAGAGGAAGAGGA+AGG | 0.438355 | 3.2:+4180679 | MS.gene51964:CDS |
| CGCCCAAAACACCATGGAAA+AGG | 0.453353 | 3.2:+4180783 | MS.gene51964:CDS |
| CTTGGTTTGTTTGAAAAGAT+GGG | 0.459057 | 3.2:+4181507 | MS.gene51964:CDS |
| CCTCCTCTCTAAAGAGGAAG+TGG | 0.459131 | 3.2:+4180651 | MS.gene51964:CDS |
| AAGAGCAACTCTGCAGCTCT+TGG | 0.462439 | 3.2:+4181489 | MS.gene51964:CDS |
| TGCTTACCTCCTCTCTAAAG+AGG | 0.467882 | 3.2:+4180645 | MS.gene51964:CDS |
| CAATTGGAGAAGTATTAGAT+TGG | 0.473450 | 3.2:+4180530 | MS.gene51964:CDS |
| AAGATGTCTCGGTGCACGTC+CGG | 0.505757 | 3.2:+4181466 | MS.gene51964:CDS |
| CTTCCACTTCCTCTTTAGAG+AGG | 0.515368 | 3.2:-4180654 | None:intergenic |
| GAAGAGGAAGAGGAAGGGAA+TGG | 0.522153 | 3.2:+4180685 | MS.gene51964:CDS |
| AAGAGGAAGAGGAAGAGGAA+GGG | 0.522871 | 3.2:+4180680 | MS.gene51964:CDS |
| CCACTTCCTCTTTAGAGAGG+AGG | 0.536526 | 3.2:-4180651 | None:intergenic |
| GAGTGGCTCTCACAGTTAGG+TGG | 0.542114 | 3.2:-4181619 | None:intergenic |
| AGGAACAATGTCGTCAAAGA+AGG | 0.558119 | 3.2:+4180489 | MS.gene51964:CDS |
| CACGTCGCGGCCGATTGCAG+CGG | 0.560201 | 3.2:+4180613 | MS.gene51964:CDS |
| TTACACACTTCTTGAGGTGA+AGG | 0.565558 | 3.2:+4181530 | MS.gene51964:CDS |
| ATAGGTATGGTGAACAAAGA+GGG | 0.575631 | 3.2:-4180725 | None:intergenic |
| GATGGGTTACACACTTCTTG+AGG | 0.581446 | 3.2:+4181524 | MS.gene51964:CDS |
| AGGAGGACGCTATTGTCTTG+TGG | 0.587701 | 3.2:+4181571 | MS.gene51964:CDS |
| TCCCGAATATTGGCAGATCG+TGG | 0.596909 | 3.2:+4180578 | MS.gene51964:CDS |
| CTAACCATGAAACAGTTACA+AGG | 0.600808 | 3.2:+4180469 | None:intergenic |
| GATAGGTATGGTGAACAAAG+AGG | 0.607709 | 3.2:-4180726 | None:intergenic |
| CACCGCCGCCCAAAACACCA+TGG | 0.620119 | 3.2:+4180777 | MS.gene51964:CDS |
| CACCATACCTATCGTAAACG+TGG | 0.628725 | 3.2:+4180736 | MS.gene51964:CDS |
| GGTGGGTGCTAAAGATGTCT+CGG | 0.629911 | 3.2:+4181455 | MS.gene51964:intron |
| TACCACGTTTACGATAGGTA+TGG | 0.651983 | 3.2:-4180738 | None:intergenic |
| AGCGATACCACGTTTACGAT+AGG | 0.681782 | 3.2:-4180743 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTGTTTTTTGGATT+AGG | + | chr3.2:4180830-4180849 | MS.gene51964:intron | 15.0% |
| !!! | TCTGTTATAATTTTGTTTTT+TGG | + | chr3.2:4180824-4180843 | MS.gene51964:intron | 15.0% |
| ! | ACATTGTAACAGACTATTAA+TGG | - | chr3.2:4181421-4181440 | None:intergenic | 25.0% |
| ! | CAACCAAAAACATCAAAAAA+AGG | - | chr3.2:4181382-4181401 | None:intergenic | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | - | chr3.2:4181287-4181306 | None:intergenic | 25.0% |
| !! | TTTCTTCTTGTTAGTGATTT+TGG | + | chr3.2:4181204-4181223 | MS.gene51964:intron | 25.0% |
| !!! | AGACCTTTTTTTGATGTTTT+TGG | + | chr3.2:4181376-4181395 | MS.gene51964:intron | 25.0% |
| ACAATGTGTAATTTGACTGA+AGG | + | chr3.2:4181434-4181453 | MS.gene51964:intron | 30.0% | |
| AGAAAACAGAAAATCATCAC+AGG | - | chr3.2:4181033-4181052 | None:intergenic | 30.0% | |
| TCCATACATAACCAGTTAAA+AGG | - | chr3.2:4180895-4180914 | None:intergenic | 30.0% | |
| ! | CTAGGATTATCTTTTATTCC+TGG | + | chr3.2:4181076-4181095 | MS.gene51964:intron | 30.0% |
| ! | TATGTATGGAGTTGGTTTAA+TGG | + | chr3.2:4180905-4180924 | MS.gene51964:intron | 30.0% |
| ! | TGTGATGATTTTCTGTTTTC+TGG | + | chr3.2:4181032-4181051 | MS.gene51964:intron | 30.0% |
| ! | TTATCTTTTATTCCTGGAAG+TGG | + | chr3.2:4181082-4181101 | MS.gene51964:intron | 30.0% |
| !! | CAATTGGAGAAGTATTAGAT+TGG | + | chr3.2:4180530-4180549 | MS.gene51964:CDS | 30.0% |
| !! | CTTGGTTTGTTTGAAAAGAT+GGG | + | chr3.2:4181507-4181526 | MS.gene51964:CDS | 30.0% |
| !! | TCTTGGTTTGTTTGAAAAGA+TGG | + | chr3.2:4181506-4181525 | MS.gene51964:CDS | 30.0% |
| !! | TTTTCTTGTTTCCTAGTCTT+GGG | + | chr3.2:4181302-4181321 | MS.gene51964:intron | 30.0% |
| AAAACACCATGGAAAAGGTT+AGG | + | chr3.2:4180788-4180807 | MS.gene51964:intron | 35.0% | |
| AACAAAAAACCTAGCCTACT+CGG | - | chr3.2:4180976-4180995 | None:intergenic | 35.0% | |
| AACCAAAAGAAAAATCTCGG+AGG | - | chr3.2:4181284-4181303 | None:intergenic | 35.0% | |
| ATAGGTATGGTGAACAAAGA+GGG | - | chr3.2:4180728-4180747 | None:intergenic | 35.0% | |
| ATGTGTAATTTGACTGAAGG+TGG | + | chr3.2:4181437-4181456 | MS.gene51964:intron | 35.0% | |
| CTCCTCATCATCAAAATACT+TGG | - | chr3.2:4181556-4181575 | None:intergenic | 35.0% | |
| TAACTGGTTATGTATGGAGT+TGG | + | chr3.2:4180897-4180916 | MS.gene51964:intron | 35.0% | |
| TAATGGTTAGGTATGAAGCT+TGG | + | chr3.2:4180922-4180941 | MS.gene51964:intron | 35.0% | |
| TGTGTAATTTGACTGAAGGT+GGG | + | chr3.2:4181438-4181457 | MS.gene51964:intron | 35.0% | |
| ! | AACAAACCTAACCTTTTCCA+TGG | - | chr3.2:4180797-4180816 | None:intergenic | 35.0% |
| ! | AACCTTTTCCATGGTGTTTT+GGG | - | chr3.2:4180788-4180807 | None:intergenic | 35.0% |
| ! | ATGGAGTTGGTTTAATGGTT+AGG | + | chr3.2:4180910-4180929 | MS.gene51964:intron | 35.0% |
| ! | CTTCTTGTTAGTGATTTTGG+TGG | + | chr3.2:4181207-4181226 | MS.gene51964:intron | 35.0% |
| ! | TAACCTTTTCCATGGTGTTT+TGG | - | chr3.2:4180789-4180808 | None:intergenic | 35.0% |
| ! | TTTTCAGATAGATCACACAG+TGG | - | chr3.2:4181010-4181029 | None:intergenic | 35.0% |
| !! | GCCTTTTAACTGGTTATGTA+TGG | + | chr3.2:4180891-4180910 | MS.gene51964:intron | 35.0% |
| !! | GTTTTCTTGTTTCCTAGTCT+TGG | + | chr3.2:4181301-4181320 | MS.gene51964:intron | 35.0% |
| !! | TTGTTAGTGATTTTGGTGGT+TGG | + | chr3.2:4181211-4181230 | MS.gene51964:intron | 35.0% |
| !! | TTTCTTGTTTCCTAGTCTTG+GGG | + | chr3.2:4181303-4181322 | MS.gene51964:intron | 35.0% |
| !! | TTTGTGTAGTTAGTCTTGTC+TGG | + | chr3.2:4181245-4181264 | MS.gene51964:intron | 35.0% |
| !!! | CAAGTATTTTGATGATGAGG+AGG | + | chr3.2:4181554-4181573 | MS.gene51964:CDS | 35.0% |
| AAAATCCATACCCCAAGACT+AGG | - | chr3.2:4181316-4181335 | None:intergenic | 40.0% | |
| AAACCAATTCTCTGTGGGAA+GGG | + | chr3.2:4181156-4181175 | MS.gene51964:intron | 40.0% | |
| AAAGGGAGTGGCAATGATTA+GGG | - | chr3.2:4181122-4181141 | None:intergenic | 40.0% | |
| AATCTGAGTTTCACTAGGCT+AGG | + | chr3.2:4181058-4181077 | MS.gene51964:intron | 40.0% | |
| AGGAACAATGTCGTCAAAGA+AGG | + | chr3.2:4180489-4180508 | MS.gene51964:CDS | 40.0% | |
| GATAGGTATGGTGAACAAAG+AGG | - | chr3.2:4180729-4180748 | None:intergenic | 40.0% | |
| GGTAGAATCTGAGTTTCACT+AGG | + | chr3.2:4181053-4181072 | MS.gene51964:intron | 40.0% | |
| GTTAGGTATGAAGCTTGGTT+CGG | + | chr3.2:4180927-4180946 | MS.gene51964:intron | 40.0% | |
| TAAAGGGAGTGGCAATGATT+AGG | - | chr3.2:4181123-4181142 | None:intergenic | 40.0% | |
| TACCACGTTTACGATAGGTA+TGG | - | chr3.2:4180741-4180760 | None:intergenic | 40.0% | |
| TATTCCTGGAAGTGGTTCTT+TGG | + | chr3.2:4181090-4181109 | MS.gene51964:intron | 40.0% | |
| TGCATAAGAGTCGCAACAAT+TGG | + | chr3.2:4180514-4180533 | MS.gene51964:CDS | 40.0% | |
| TTACACACTTCTTGAGGTGA+AGG | + | chr3.2:4181530-4181549 | MS.gene51964:CDS | 40.0% | |
| TTCCACGATCTGCCAATATT+CGG | - | chr3.2:4180583-4180602 | None:intergenic | 40.0% | |
| ! | GGATTAGGTTTGTCACTTGT+GGG | + | chr3.2:4180845-4180864 | MS.gene51964:intron | 40.0% |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | + | chr3.2:4181279-4181298 | MS.gene51964:intron | 40.0% |
| ! | TGGATTAGGTTTGTCACTTG+TGG | + | chr3.2:4180844-4180863 | MS.gene51964:intron | 40.0% |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | + | chr3.2:4180881-4180900 | MS.gene51964:intron | 40.0% |
| ! | TTGGGGTATGGATTTTCTCT+AGG | + | chr3.2:4181320-4181339 | MS.gene51964:intron | 40.0% |
| !! | TTGGTTCGGTTGTTTCGTTA+GGG | + | chr3.2:4180941-4180960 | MS.gene51964:intron | 40.0% |
| !!! | GGCCAAGTATTTTGATGATG+AGG | + | chr3.2:4181551-4181570 | MS.gene51964:CDS | 40.0% |
| AAACCCTTCCCACAGAGAAT+TGG | - | chr3.2:4181162-4181181 | None:intergenic | 45.0% | |
| AACAATACAGCCGCTGCAAT+CGG | - | chr3.2:4180626-4180645 | None:intergenic | 45.0% | |
| AAGAGGAAGAGGAAGAGGAA+GGG | + | chr3.2:4180674-4180693 | MS.gene51964:CDS | 45.0% | |
| AGCGATACCACGTTTACGAT+AGG | - | chr3.2:4180746-4180765 | None:intergenic | 45.0% | |
| AGGCGAAACCAATTCTCTGT+GGG | + | chr3.2:4181151-4181170 | MS.gene51964:intron | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | + | chr3.2:4181127-4181146 | MS.gene51964:intron | 45.0% | |
| CACCATACCTATCGTAAACG+TGG | + | chr3.2:4180736-4180755 | MS.gene51964:CDS | 45.0% | |
| CTCGTTACTCTCCCGAATAT+TGG | + | chr3.2:4180568-4180587 | MS.gene51964:CDS | 45.0% | |
| GAAACCAATTCTCTGTGGGA+AGG | + | chr3.2:4181155-4181174 | MS.gene51964:intron | 45.0% | |
| TAGCGTATAGGGTGTGGTAT+AGG | + | chr3.2:4180869-4180888 | MS.gene51964:intron | 45.0% | |
| TCCACGATCTGCCAATATTC+GGG | - | chr3.2:4180582-4180601 | None:intergenic | 45.0% | |
| TTCACCAAAGAACCACTTCC+AGG | - | chr3.2:4181097-4181116 | None:intergenic | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | + | chr3.2:4181128-4181147 | MS.gene51964:intron | 45.0% | |
| TTTCGCCTCCCACTCATAAA+GGG | - | chr3.2:4181139-4181158 | None:intergenic | 45.0% | |
| ! | CTCTAAAGAGGAAGTGGAAG+AGG | + | chr3.2:4180657-4180676 | MS.gene51964:CDS | 45.0% |
| ! | CTTCCACTTCCTCTTTAGAG+AGG | - | chr3.2:4180657-4180676 | None:intergenic | 45.0% |
| ! | GAAAAAGCTTGTTCACGTCG+CGG | + | chr3.2:4180600-4180619 | MS.gene51964:CDS | 45.0% |
| ! | TGCTTACCTCCTCTCTAAAG+AGG | + | chr3.2:4180645-4180664 | MS.gene51964:CDS | 45.0% |
| ! | TTCTCTGTGGGAAGGGTTTT+TGG | + | chr3.2:4181163-4181182 | MS.gene51964:intron | 45.0% |
| !! | CACTTGTGGGTTAGCGTATA+GGG | + | chr3.2:4180858-4180877 | MS.gene51964:intron | 45.0% |
| !! | CTTGGTTCGGTTGTTTCGTT+AGG | + | chr3.2:4180940-4180959 | MS.gene51964:intron | 45.0% |
| !! | CTTTTCCATGGTGTTTTGGG+CGG | - | chr3.2:4180785-4180804 | None:intergenic | 45.0% |
| !! | GATGGGTTACACACTTCTTG+AGG | + | chr3.2:4181524-4181543 | MS.gene51964:CDS | 45.0% |
| !! | TCACTTGTGGGTTAGCGTAT+AGG | + | chr3.2:4180857-4180876 | MS.gene51964:intron | 45.0% |
| !! | TGGTTCGGTTGTTTCGTTAG+GGG | + | chr3.2:4180942-4180961 | MS.gene51964:intron | 45.0% |
| !! | TGTTTCCTAGTCTTGGGGTA+TGG | + | chr3.2:4181308-4181327 | MS.gene51964:intron | 45.0% |
| AAGAGCAACTCTGCAGCTCT+TGG | + | chr3.2:4181489-4181508 | MS.gene51964:CDS | 50.0% | |
| AAGGTCTGTACAACAGCTGC+AGG | - | chr3.2:4181363-4181382 | None:intergenic | 50.0% | |
| AGAGGAAGAGGAAGAGGAAG+AGG | + | chr3.2:4180675-4180694 | MS.gene51964:CDS | 50.0% | |
| AGAGGAAGTGGAAGAGGAAG+AGG | + | chr3.2:4180663-4180682 | MS.gene51964:CDS | 50.0% | |
| AGGAGGACGCTATTGTCTTG+TGG | + | chr3.2:4181571-4181590 | MS.gene51964:CDS | 50.0% | |
| AGTGGAAGAGGAAGAGGAAG+AGG | + | chr3.2:4180669-4180688 | MS.gene51964:CDS | 50.0% | |
| CGCCCAAAACACCATGGAAA+AGG | + | chr3.2:4180783-4180802 | MS.gene51964:CDS | 50.0% | |
| GAAGAGGAAGAGGAAGAGGA+AGG | + | chr3.2:4180673-4180692 | MS.gene51964:CDS | 50.0% | |
| GAAGAGGAAGAGGAAGGGAA+TGG | + | chr3.2:4180685-4180704 | MS.gene51964:CDS | 50.0% | |
| GAGGCGAAACCAATTCTCTG+TGG | + | chr3.2:4181150-4181169 | MS.gene51964:intron | 50.0% | |
| GGTGGGTGCTAAAGATGTCT+CGG | + | chr3.2:4181455-4181474 | MS.gene51964:intron | 50.0% | |
| GTCTTGTCTGGTGAGTGTTC+TGG | + | chr3.2:4181257-4181276 | MS.gene51964:intron | 50.0% | |
| GTTTCGCCTCCCACTCATAA+AGG | - | chr3.2:4181140-4181159 | None:intergenic | 50.0% | |
| TACAACAGCTGCAGGTCTCA+AGG | - | chr3.2:4181355-4181374 | None:intergenic | 50.0% | |
| TCCCGAATATTGGCAGATCG+TGG | + | chr3.2:4180578-4180597 | MS.gene51964:CDS | 50.0% | |
| TTGTTTCGTTAGGGGTGGGA+AGG | + | chr3.2:4180950-4180969 | MS.gene51964:intron | 50.0% | |
| ! | CCACTTCCTCTTTAGAGAGG+AGG | - | chr3.2:4180654-4180673 | None:intergenic | 50.0% |
| ! | CCTCCTCTCTAAAGAGGAAG+TGG | + | chr3.2:4180651-4180670 | MS.gene51964:CDS | 50.0% |
| ! | TCGGTTGTTTCGTTAGGGGT+GGG | + | chr3.2:4180946-4180965 | MS.gene51964:intron | 50.0% |
| ! | TTCGGTTGTTTCGTTAGGGG+TGG | + | chr3.2:4180945-4180964 | MS.gene51964:intron | 50.0% |
| CCACTCCCTTTATGAGTGGG+AGG | + | chr3.2:4181131-4181150 | MS.gene51964:intron | 55.0% | |
| CCTCCCACTCATAAAGGGAG+TGG | - | chr3.2:4181134-4181153 | None:intergenic | 55.0% | |
| GAGCTGCAGAGTTGCTCTTC+CGG | - | chr3.2:4181488-4181507 | None:intergenic | 55.0% | |
| ! | AAGATGTCTCGGTGCACGTC+CGG | + | chr3.2:4181466-4181485 | MS.gene51964:CDS | 55.0% |
| !! | GTGGGTTAGCGTATAGGGTG+TGG | + | chr3.2:4180863-4180882 | MS.gene51964:intron | 55.0% |
| !! | TTCCATGGTGTTTTGGGCGG+CGG | - | chr3.2:4180782-4180801 | None:intergenic | 55.0% |
| CACCGCCGCCCAAAACACCA+TGG | + | chr3.2:4180777-4180796 | MS.gene51964:CDS | 65.0% | |
| GTGGGAAGGCCGAGTAGGCT+AGG | + | chr3.2:4180964-4180983 | MS.gene51964:intron | 65.0% | |
| TAGGGGTGGGAAGGCCGAGT+AGG | + | chr3.2:4180959-4180978 | MS.gene51964:intron | 65.0% | |
| CACGTCGCGGCCGATTGCAG+CGG | + | chr3.2:4180613-4180632 | MS.gene51964:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 4180475 | 4181626 | 4180475 | ID=MS.gene51964 |
| chr3.2 | mRNA | 4180475 | 4181626 | 4180475 | ID=MS.gene51964.t1;Parent=MS.gene51964 |
| chr3.2 | exon | 4180475 | 4180804 | 4180475 | ID=MS.gene51964.t1.exon1;Parent=MS.gene51964.t1 |
| chr3.2 | CDS | 4180475 | 4180804 | 4180475 | ID=cds.MS.gene51964.t1;Parent=MS.gene51964.t1 |
| chr3.2 | exon | 4181456 | 4181626 | 4181456 | ID=MS.gene51964.t1.exon2;Parent=MS.gene51964.t1 |
| chr3.2 | CDS | 4181456 | 4181626 | 4181456 | ID=cds.MS.gene51964.t1;Parent=MS.gene51964.t1 |
| Gene Sequence |
| Protein sequence |
