Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51967.t1 | KEH33239.1 | 66.2 | 148 | 27 | 2 | 1 | 125 | 8 | 155 | 6.30E-41 | 176.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51967.t1 | Q9FKI4 | 35.3 | 153 | 62 | 4 | 6 | 121 | 2 | 154 | 1.9e-09 | 63.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51967.t1 | A0A072UTR7 | 66.2 | 148 | 27 | 2 | 1 | 125 | 8 | 155 | 4.5e-41 | 176.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene65650 | MS.gene51967 | PPI |
| MS.gene51967 | MS.gene037324 | PPI |
| MS.gene51967 | MS.gene22814 | PPI |
| MS.gene51967 | MS.gene002540 | PPI |
| MS.gene51967 | MS.gene93131 | PPI |
| MS.gene51967 | MS.gene99744 | PPI |
| MS.gene025927 | MS.gene51967 | PPI |
| MS.gene038837 | MS.gene51967 | PPI |
| MS.gene51967 | MS.gene020996 | PPI |
| MS.gene61498 | MS.gene51967 | PPI |
| MS.gene045843 | MS.gene51967 | PPI |
| MS.gene51967 | MS.gene029211 | PPI |
| MS.gene01518 | MS.gene51967 | PPI |
| MS.gene51967 | MS.gene047400 | PPI |
| MS.gene51967 | MS.gene029242 | PPI |
| MS.gene51967 | MS.gene41916 | PPI |
| MS.gene51967 | MS.gene77827 | PPI |
| MS.gene51967 | MS.gene004214 | PPI |
| MS.gene51967 | MS.gene001986 | PPI |
| MS.gene51967 | MS.gene38111 | PPI |
| MS.gene059422 | MS.gene51967 | PPI |
| MS.gene036800 | MS.gene51967 | PPI |
| MS.gene51967 | MS.gene62426 | PPI |
| MS.gene51967 | MS.gene054186 | PPI |
| MS.gene59047 | MS.gene51967 | PPI |
| MS.gene51967 | MS.gene024463 | PPI |
| MS.gene51967 | MS.gene056257 | PPI |
| MS.gene51967 | MS.gene067362 | PPI |
| MS.gene51967 | MS.gene037362 | PPI |
| MS.gene050629 | MS.gene51967 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51967.t1 | MTR_3g030055 | 66.216 | 148 | 27 | 3 | 1 | 125 | 8 | 155 | 7.76e-60 | 181 |
| MS.gene51967.t1 | MTR_3g030055 | 84.746 | 59 | 9 | 0 | 1 | 59 | 1 | 59 | 1.11e-31 | 109 |
| MS.gene51967.t1 | MTR_3g034200 | 36.129 | 155 | 62 | 4 | 6 | 123 | 2 | 156 | 2.74e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51967.t1 | AT5G13780 | 35.065 | 154 | 63 | 4 | 6 | 122 | 2 | 155 | 2.86e-14 | 66.2 |
Find 26 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACACAATGTGCCAATATT+CGG | 0.301530 | 3.2:+4341784 | None:intergenic |
| CTCGTTACTCGCCCGAATAT+TGG | 0.335099 | 3.2:-4341796 | MS.gene51967:CDS |
| CACACAATGTGCCAATATTC+GGG | 0.341666 | 3.2:+4341785 | None:intergenic |
| GAGCTGCAGAGCTGCTCTTC+CGG | 0.343101 | 3.2:+4340339 | None:intergenic |
| TCATGGTTTGTTTGAGAAGA+TGG | 0.355483 | 3.2:-4340318 | MS.gene51967:CDS |
| CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3.2:+4340271 | None:intergenic |
| CAATTAGAGACATATTAGAT+TGG | 0.477630 | 3.2:-4341834 | MS.gene51967:CDS |
| CATGGTTTGTTTGAGAAGAT+GGG | 0.488586 | 3.2:-4340317 | MS.gene51967:CDS |
| TGATTGAAGGTGGGTGCTAA+AGG | 0.495589 | 3.2:-4340377 | MS.gene51967:intron |
| AAGGTGTCTTAGTGCACGTC+CGG | 0.505450 | 3.2:-4340358 | MS.gene51967:CDS |
| AAGGTCTGTACAACAGCTGC+AGG | 0.508594 | 3.2:+4340463 | None:intergenic |
| GTTGCTTATGTCCTCTCTGA+AGG | 0.513246 | 3.2:-4341721 | MS.gene51967:CDS |
| AGTAACAATGTCGTCAAAGA+AGG | 0.537395 | 3.2:-4341875 | None:intergenic |
| TACAACAGCTGCAGGTCTCA+AGG | 0.552542 | 3.2:+4340471 | None:intergenic |
| GTCTTGAGGAAGATACTCAA+GGG | 0.554037 | 3.2:-4340239 | MS.gene51967:CDS |
| AAGAGCAGCTCTGCAGCTCA+TGG | 0.554652 | 3.2:-4340335 | MS.gene51967:CDS |
| TGTCTTGAGGAAGATACTCA+AGG | 0.562517 | 3.2:-4340240 | MS.gene51967:CDS |
| TTACACACTTCTCGAGGTGA+AGG | 0.585920 | 3.2:-4340294 | MS.gene51967:CDS |
| TGTCCTCTCTGAAGGTGAAG+AGG | 0.587441 | 3.2:-4341713 | MS.gene51967:intron |
| AGGAGGACGCTATTGTCTTG+AGG | 0.615172 | 3.2:-4340253 | MS.gene51967:CDS |
| GAGTGGGTCTCACAGTTAGG+TGG | 0.634645 | 3.2:+4340205 | None:intergenic |
| CACGTCGCGGACGATTGCAG+CGG | 0.650360 | 3.2:-4341751 | MS.gene51967:CDS |
| TCTTGAGGAAGATACTCAAG+GGG | 0.688967 | 3.2:-4340238 | MS.gene51967:CDS |
| GATGGGTTACACACTTCTCG+AGG | 0.699417 | 3.2:-4340300 | MS.gene51967:CDS |
| TGAAAAGCTTCTTCACGTCG+CGG | 0.707390 | 3.2:-4341764 | MS.gene51967:CDS |
| CTACCTCTTCACCTTCAGAG+AGG | 0.722508 | 3.2:+4341710 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAACATTATTTTTGTTT+TGG | - | chr3.2:4340799-4340818 | MS.gene51967:intron | 10.0% |
| !! | AAAATACATATACATAAATG+TGG | + | chr3.2:4340729-4340748 | None:intergenic | 15.0% |
| !! | AAATACATATACATAAATGT+GGG | + | chr3.2:4340728-4340747 | None:intergenic | 15.0% |
| !!! | ATTTATGTATATGTATTTTG+TGG | - | chr3.2:4340730-4340749 | MS.gene51967:intron | 15.0% |
| !!! | ATTTTGTTCATTTTTTGATA+AGG | - | chr3.2:4340605-4340624 | MS.gene51967:intron | 15.0% |
| !!! | TTTTGTTCATTTTTTGATAA+GGG | - | chr3.2:4340606-4340625 | MS.gene51967:intron | 15.0% |
| !! | AATACATATACATAAATGTG+GGG | + | chr3.2:4340727-4340746 | None:intergenic | 20.0% |
| !!! | AATGAAAAATTTTAGCCTTT+TGG | + | chr3.2:4340694-4340713 | None:intergenic | 20.0% |
| !!! | ATAATCTTGTTTTTTGGATT+AGG | - | chr3.2:4341097-4341116 | MS.gene51967:intron | 20.0% |
| !!! | ATGAAAAATTTTAGCCTTTT+GGG | + | chr3.2:4340693-4340712 | None:intergenic | 20.0% |
| !!! | TATGTATGGAGTTATTTTAA+TGG | - | chr3.2:4341172-4341191 | MS.gene51967:intron | 20.0% |
| !!! | TCTGTTATAATCTTGTTTTT+TGG | - | chr3.2:4341091-4341110 | MS.gene51967:intron | 20.0% |
| !!! | TTTCTTTTTGTTACTGATTT+TGG | - | chr3.2:4341468-4341487 | MS.gene51967:intron | 20.0% |
| ! | AATACCAAGGTTATCAAAAT+CGG | + | chr3.2:4340975-4340994 | None:intergenic | 25.0% |
| ! | ACAACCAAAAACATCAAAAA+AGG | + | chr3.2:4341647-4341666 | None:intergenic | 25.0% |
| ! | ATACATATACATAAATGTGG+GGG | + | chr3.2:4340726-4340745 | None:intergenic | 25.0% |
| ! | CAATTAGAGACATATTAGAT+TGG | - | chr3.2:4340254-4340273 | MS.gene51967:CDS | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | + | chr3.2:4341552-4341571 | None:intergenic | 25.0% |
| !!! | ATAGGATTTTGTCTGTTTTT+GGG | + | chr3.2:4340514-4340533 | None:intergenic | 25.0% |
| !!! | ATGGAGTTATTTTAATGGTT+AGG | - | chr3.2:4341177-4341196 | MS.gene51967:intron | 25.0% |
| !!! | TTATGTAGTTAGTCTTGTAT+GGG | - | chr3.2:4341511-4341530 | MS.gene51967:intron | 25.0% |
| !!! | TTTATGTAGTTAGTCTTGTA+TGG | - | chr3.2:4341510-4341529 | MS.gene51967:intron | 25.0% |
| AAAATCGCAATCAAAATCGA+AGG | + | chr3.2:4340830-4340849 | None:intergenic | 30.0% | |
| AACAATGAGCAATACTAAAG+TGG | + | chr3.2:4340411-4340430 | None:intergenic | 30.0% | |
| ACACTGTGTAATTTGATTGA+AGG | - | chr3.2:4341698-4341717 | MS.gene51967:intron | 30.0% | |
| ACAGTGTAACAGACTATTAA+TGG | + | chr3.2:4341685-4341704 | None:intergenic | 30.0% | |
| AGAAAACAGAAAATCACCAT+GGG | + | chr3.2:4341296-4341315 | None:intergenic | 30.0% | |
| ATAAAGAAACAAACCTTCCA+TGG | + | chr3.2:4341071-4341090 | None:intergenic | 30.0% | |
| ATACCAAGGTTATCAAAATC+GGG | + | chr3.2:4340974-4340993 | None:intergenic | 30.0% | |
| TAAAATCGCAATCAAAATCG+AGG | + | chr3.2:4340831-4340850 | None:intergenic | 30.0% | |
| TCCATACATAACCAGTTAAA+AGG | + | chr3.2:4341162-4341181 | None:intergenic | 30.0% | |
| TGTGTAATTTGATTGAAGGT+GGG | - | chr3.2:4341702-4341721 | MS.gene51967:intron | 30.0% | |
| ! | GATAGGATTTTGTCTGTTTT+TGG | + | chr3.2:4340515-4340534 | None:intergenic | 30.0% |
| ! | TTTCTTGTTTCCTAATCTTG+TGG | - | chr3.2:4341568-4341587 | MS.gene51967:intron | 30.0% |
| !! | CCTTTTGGGTATTTATAGAA+CGG | + | chr3.2:4340679-4340698 | None:intergenic | 30.0% |
| !! | CTTTTGGGTATTTATAGAAC+GGG | + | chr3.2:4340678-4340697 | None:intergenic | 30.0% |
| !! | TATGTAGTTAGTCTTGTATG+GGG | - | chr3.2:4341512-4341531 | MS.gene51967:intron | 30.0% |
| !!! | AGGATTTTGATGGATTTTGA+AGG | - | chr3.2:4340582-4340601 | MS.gene51967:intron | 30.0% |
| !!! | CAGACCTTTTTTGATGTTTT+TGG | - | chr3.2:4341640-4341659 | MS.gene51967:intron | 30.0% |
| !!! | CTTTTTGTTACTGATTTTGG+TGG | - | chr3.2:4341471-4341490 | MS.gene51967:intron | 30.0% |
| AACCAAAAGAAAAATCTCGG+AGG | + | chr3.2:4341549-4341568 | None:intergenic | 35.0% | |
| CAGAAAACAGAAAATCACCA+TGG | + | chr3.2:4341297-4341316 | None:intergenic | 35.0% | |
| CCGTTCTATAAATACCCAAA+AGG | - | chr3.2:4340676-4340695 | MS.gene51967:intron | 35.0% | |
| CTAGGATTATCATCTATTCC+TGG | - | chr3.2:4341339-4341358 | MS.gene51967:intron | 35.0% | |
| CTCCTCATCATCAAAATACT+TGG | + | chr3.2:4341820-4341839 | None:intergenic | 35.0% | |
| CTGTGTAATTTGATTGAAGG+TGG | - | chr3.2:4341701-4341720 | MS.gene51967:intron | 35.0% | |
| GACTTTACTTCAAGTCGAAA+GGG | + | chr3.2:4340952-4340971 | None:intergenic | 35.0% | |
| GACTTTAGTAGAATCGATGT+AGG | + | chr3.2:4340873-4340892 | None:intergenic | 35.0% | |
| TAATGGTTAGGTATGAAGCT+TGG | - | chr3.2:4341189-4341208 | MS.gene51967:intron | 35.0% | |
| TACACAAAGTCGCAAAAACT+AGG | + | chr3.2:4340462-4340481 | None:intergenic | 35.0% | |
| TACCACGTTTATGATAGGTA+TGG | + | chr3.2:4341015-4341034 | None:intergenic | 35.0% | |
| TCACACAATGTGCCAATATT+CGG | + | chr3.2:4340307-4340326 | None:intergenic | 35.0% | |
| TCGATTCTACTAAAGTCCTT+GGG | - | chr3.2:4340876-4340895 | MS.gene51967:intron | 35.0% | |
| TGAAATCCATTCAAAATCGC+AGG | - | chr3.2:4340562-4340581 | MS.gene51967:intron | 35.0% | |
| TTATCATCTATTCCTGGAAG+TGG | - | chr3.2:4341345-4341364 | MS.gene51967:intron | 35.0% | |
| ! | AAATCGAAGGATTTTACCCA+AGG | + | chr3.2:4340895-4340914 | None:intergenic | 35.0% |
| ! | AGTCGCAAAAACTAGGATTT+TGG | + | chr3.2:4340455-4340474 | None:intergenic | 35.0% |
| ! | ATCGATTCTACTAAAGTCCT+TGG | - | chr3.2:4340875-4340894 | MS.gene51967:intron | 35.0% |
| ! | CAAAATCCTGCGATTTTGAA+TGG | + | chr3.2:4340571-4340590 | None:intergenic | 35.0% |
| ! | CATGGTGATTTTCTGTTTTC+TGG | - | chr3.2:4341295-4341314 | MS.gene51967:intron | 35.0% |
| ! | GTCGCAAAAACTAGGATTTT+GGG | + | chr3.2:4340454-4340473 | None:intergenic | 35.0% |
| ! | TCAAAATCGCAGGATTTTGA+TGG | - | chr3.2:4340572-4340591 | MS.gene51967:intron | 35.0% |
| !! | CATGGTTTGTTTGAGAAGAT+GGG | - | chr3.2:4341771-4341790 | MS.gene51967:CDS | 35.0% |
| !! | CGATTTTGTGCGATTTTGAT+AGG | + | chr3.2:4340532-4340551 | None:intergenic | 35.0% |
| !! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3.2:4341158-4341177 | MS.gene51967:intron | 35.0% |
| !! | TCATGGTTTGTTTGAGAAGA+TGG | - | chr3.2:4341770-4341789 | MS.gene51967:CDS | 35.0% |
| !!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3.2:4341818-4341837 | MS.gene51967:CDS | 35.0% |
| !!! | TAGGATTTTGGGACTTAAGT+CGG | + | chr3.2:4340443-4340462 | None:intergenic | 35.0% |
| !!! | TGTTACTGATTTTGGTGGTT+GGG | - | chr3.2:4341476-4341495 | MS.gene51967:intron | 35.0% |
| !!! | TTGTTACTGATTTTGGTGGT+TGG | - | chr3.2:4341475-4341494 | MS.gene51967:intron | 35.0% |
| AAAATCCGCACCACAAGATT+AGG | + | chr3.2:4341581-4341600 | None:intergenic | 40.0% | |
| AACGGGTCATGGATTCAAAT+CGG | + | chr3.2:4340661-4340680 | None:intergenic | 40.0% | |
| AATCGGGTCAATTTACGAAC+TGG | + | chr3.2:4340644-4340663 | None:intergenic | 40.0% | |
| AATCTGAGTTTCACTAGGCT+AGG | - | chr3.2:4341321-4341340 | MS.gene51967:intron | 40.0% | |
| AGCGATACCACGTTTATGAT+AGG | + | chr3.2:4341020-4341039 | None:intergenic | 40.0% | |
| AGGCAAAACCAATTCTCTGT+GGG | - | chr3.2:4341414-4341433 | MS.gene51967:intron | 40.0% | |
| ATAGGTATGGTGAACGAAGA+GGG | + | chr3.2:4341002-4341021 | None:intergenic | 40.0% | |
| ATCGGGTCAATTTACGAACT+GGG | + | chr3.2:4340643-4340662 | None:intergenic | 40.0% | |
| CACACAATGTGCCAATATTC+GGG | + | chr3.2:4340306-4340325 | None:intergenic | 40.0% | |
| CACCATACCTATCATAAACG+TGG | - | chr3.2:4341010-4341029 | MS.gene51967:intron | 40.0% | |
| CTGTGTGATCTATAAACCCA+TGG | - | chr3.2:4341277-4341296 | MS.gene51967:intron | 40.0% | |
| GGACTTTACTTCAAGTCGAA+AGG | + | chr3.2:4340953-4340972 | None:intergenic | 40.0% | |
| GGTAGAATCTGAGTTTCACT+AGG | - | chr3.2:4341316-4341335 | MS.gene51967:intron | 40.0% | |
| GGTATTTATAGAACGGGTCA+TGG | + | chr3.2:4340672-4340691 | None:intergenic | 40.0% | |
| GTCTTGAGGAAGATACTCAA+GGG | - | chr3.2:4341849-4341868 | MS.gene51967:CDS | 40.0% | |
| GTTAGGTATGAAGCTTGGTT+CGG | - | chr3.2:4341194-4341213 | MS.gene51967:intron | 40.0% | |
| TAAAGGGAGTGGCAATGATT+CGG | + | chr3.2:4341386-4341405 | None:intergenic | 40.0% | |
| TAGTGTATAGGGTGTGGTAT+AGG | - | chr3.2:4341136-4341155 | MS.gene51967:intron | 40.0% | |
| TATTCCTGGAAGTGGTTCTT+CGG | - | chr3.2:4341353-4341372 | MS.gene51967:intron | 40.0% | |
| TCGAAAGGGAGTAGCAAAAT+CGG | + | chr3.2:4340938-4340957 | None:intergenic | 40.0% | |
| TCGATGTAGGATAGCAAAGT+CGG | + | chr3.2:4340860-4340879 | None:intergenic | 40.0% | |
| TCTTGAGGAAGATACTCAAG+GGG | - | chr3.2:4341850-4341869 | MS.gene51967:CDS | 40.0% | |
| TGGGTTTATAGATCACACAG+TGG | + | chr3.2:4341277-4341296 | None:intergenic | 40.0% | |
| TGTCTTGAGGAAGATACTCA+AGG | - | chr3.2:4341848-4341867 | MS.gene51967:CDS | 40.0% | |
| TGTTTCCTAATCTTGTGGTG+CGG | - | chr3.2:4341573-4341592 | MS.gene51967:intron | 40.0% | |
| ! | CAAACCTTCCATGGTGTTTT+TGG | + | chr3.2:4341062-4341081 | None:intergenic | 40.0% |
| ! | CACTTGTCGGTTAGTGTATA+GGG | - | chr3.2:4341125-4341144 | MS.gene51967:intron | 40.0% |
| ! | GGATTAGGTTTGTCACTTGT+CGG | - | chr3.2:4341112-4341131 | MS.gene51967:intron | 40.0% |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | - | chr3.2:4341544-4341563 | MS.gene51967:intron | 40.0% |
| ! | TCACTTGTCGGTTAGTGTAT+AGG | - | chr3.2:4341124-4341143 | MS.gene51967:intron | 40.0% |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | - | chr3.2:4341148-4341167 | MS.gene51967:intron | 40.0% |
| ! | TTTTGCCTCCCACTCATAAA+GGG | + | chr3.2:4341402-4341421 | None:intergenic | 40.0% |
| !! | AGTCCCGATTTTGATAACCT+TGG | - | chr3.2:4340968-4340987 | MS.gene51967:intron | 40.0% |
| !! | TTGGTTCGGTTGTTTCGTTA+GGG | - | chr3.2:4341208-4341227 | MS.gene51967:intron | 40.0% |
| !!! | AGGATTTTGGGACTTAAGTC+GGG | + | chr3.2:4340442-4340461 | None:intergenic | 40.0% |
| !!! | CTGTTTTTGGGACTTTGCTA+TGG | + | chr3.2:4340502-4340521 | None:intergenic | 40.0% |
| !!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3.2:4341815-4341834 | MS.gene51967:CDS | 40.0% |
| !!! | GTTACTGATTTTGGTGGTTG+GGG | - | chr3.2:4341477-4341496 | MS.gene51967:intron | 40.0% |
| AAAGGGAGTGGCAATGATTC+GGG | + | chr3.2:4341385-4341404 | None:intergenic | 45.0% | |
| AACACTTCCCCACAGAGAAT+TGG | + | chr3.2:4341425-4341444 | None:intergenic | 45.0% | |
| ACGGGTCATGGATTCAAATC+GGG | + | chr3.2:4340660-4340679 | None:intergenic | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | - | chr3.2:4341390-4341409 | MS.gene51967:intron | 45.0% | |
| CATAAACGTGGTATCGCTAC+TGG | - | chr3.2:4341022-4341041 | MS.gene51967:intron | 45.0% | |
| CGAAAGGGAGTAGCAAAATC+GGG | + | chr3.2:4340937-4340956 | None:intergenic | 45.0% | |
| CGATGTAGGATAGCAAAGTC+GGG | + | chr3.2:4340859-4340878 | None:intergenic | 45.0% | |
| GAGGCAAAACCAATTCTCTG+TGG | - | chr3.2:4341413-4341432 | MS.gene51967:intron | 45.0% | |
| GATAGGTATGGTGAACGAAG+AGG | + | chr3.2:4341003-4341022 | None:intergenic | 45.0% | |
| GGCAAAACCAATTCTCTGTG+GGG | - | chr3.2:4341415-4341434 | MS.gene51967:intron | 45.0% | |
| GTTGCTTATGTCCTCTCTGA+AGG | - | chr3.2:4340367-4340386 | MS.gene51967:CDS | 45.0% | |
| TGAAAAGCTTCTTCACGTCG+CGG | - | chr3.2:4340324-4340343 | MS.gene51967:CDS | 45.0% | |
| TGATTGAAGGTGGGTGCTAA+AGG | - | chr3.2:4341711-4341730 | MS.gene51967:intron | 45.0% | |
| TTACACACTTCTCGAGGTGA+AGG | - | chr3.2:4341794-4341813 | MS.gene51967:CDS | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | - | chr3.2:4341391-4341410 | MS.gene51967:intron | 45.0% | |
| ! | GTTTTGCCTCCCACTCATAA+AGG | + | chr3.2:4341403-4341422 | None:intergenic | 45.0% |
| ! | TCTCTGAAGGTGAAGAGGTA+GGG | - | chr3.2:4340380-4340399 | MS.gene51967:intron | 45.0% |
| ! | TTGTGGTGCGGATTTTCTCT+AGG | - | chr3.2:4341585-4341604 | MS.gene51967:intron | 45.0% |
| !! | CTTGGTTCGGTTGTTTCGTT+AGG | - | chr3.2:4341207-4341226 | MS.gene51967:intron | 45.0% |
| !! | TGGTTCGGTTGTTTCGTTAG+GGG | - | chr3.2:4341209-4341228 | MS.gene51967:intron | 45.0% |
| !!! | ACCTTCCATGGTGTTTTTGG+CGG | + | chr3.2:4341059-4341078 | None:intergenic | 45.0% |
| !!! | TCTCTGTGGGGAAGTGTTTT+TGG | - | chr3.2:4341427-4341446 | MS.gene51967:intron | 45.0% |
| AAGGTCTGTACAACAGCTGC+AGG | + | chr3.2:4341628-4341647 | None:intergenic | 50.0% | |
| AGGAGGACGCTATTGTCTTG+AGG | - | chr3.2:4341835-4341854 | MS.gene51967:CDS | 50.0% | |
| CGAAGAGGGAAGCAATACCA+AGG | + | chr3.2:4340988-4341007 | None:intergenic | 50.0% | |
| CTACCTCTTCACCTTCAGAG+AGG | + | chr3.2:4340381-4340400 | None:intergenic | 50.0% | |
| CTCGTTACTCGCCCGAATAT+TGG | - | chr3.2:4340292-4340311 | MS.gene51967:CDS | 50.0% | |
| GAAGGTGAAGAGGTAGGGAA+TGG | - | chr3.2:4340385-4340404 | MS.gene51967:intron | 50.0% | |
| GTCGGTTAGTGTATAGGGTG+TGG | - | chr3.2:4341130-4341149 | MS.gene51967:intron | 50.0% | |
| TACAACAGCTGCAGGTCTCA+AGG | + | chr3.2:4341620-4341639 | None:intergenic | 50.0% | |
| TTCACCGAAGAACCACTTCC+AGG | + | chr3.2:4341360-4341379 | None:intergenic | 50.0% | |
| TTGTTTCGTTAGGGGTGGGA+AGG | - | chr3.2:4341217-4341236 | MS.gene51967:intron | 50.0% | |
| ! | AAGGTGTCTTAGTGCACGTC+CGG | - | chr3.2:4341730-4341749 | MS.gene51967:CDS | 50.0% |
| ! | CTCTCTGAAGGTGAAGAGGT+AGG | - | chr3.2:4340379-4340398 | MS.gene51967:intron | 50.0% |
| ! | TCGGTTGTTTCGTTAGGGGT+GGG | - | chr3.2:4341213-4341232 | MS.gene51967:intron | 50.0% |
| ! | TGTCCTCTCTGAAGGTGAAG+AGG | - | chr3.2:4340375-4340394 | MS.gene51967:intron | 50.0% |
| ! | TTCGGTTGTTTCGTTAGGGG+TGG | - | chr3.2:4341212-4341231 | MS.gene51967:intron | 50.0% |
| !! | GATGGGTTACACACTTCTCG+AGG | - | chr3.2:4341788-4341807 | MS.gene51967:CDS | 50.0% |
| !! | GTCTTGTATGGGGAGTGTTC+TGG | - | chr3.2:4341522-4341541 | MS.gene51967:intron | 50.0% |
| !!! | TTCCATGGTGTTTTTGGCGG+CGG | + | chr3.2:4341056-4341075 | None:intergenic | 50.0% |
| AAGAGCAGCTCTGCAGCTCA+TGG | - | chr3.2:4341753-4341772 | MS.gene51967:CDS | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | - | chr3.2:4341394-4341413 | MS.gene51967:intron | 55.0% | |
| CCTCCCACTCATAAAGGGAG+TGG | + | chr3.2:4341397-4341416 | None:intergenic | 55.0% | |
| GCCGCCAAAAACACCATGGA+AGG | - | chr3.2:4341055-4341074 | MS.gene51967:intron | 55.0% | |
| CACCGCCGCCAAAAACACCA+TGG | - | chr3.2:4341051-4341070 | MS.gene51967:intron | 60.0% | |
| GAGCTGCAGAGCTGCTCTTC+CGG | + | chr3.2:4341752-4341771 | None:intergenic | 60.0% | |
| GTGGGAAGGCAGAGTAGGCT+AGG | - | chr3.2:4341231-4341250 | MS.gene51967:intron | 60.0% | |
| TAGGGGTGGGAAGGCAGAGT+AGG | - | chr3.2:4341226-4341245 | MS.gene51967:intron | 60.0% | |
| CACGTCGCGGACGATTGCAG+CGG | - | chr3.2:4340337-4340356 | MS.gene51967:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 4340220 | 4341890 | 4340220 | ID=MS.gene51967 |
| chr3.2 | mRNA | 4340220 | 4341890 | 4340220 | ID=MS.gene51967.t1;Parent=MS.gene51967 |
| chr3.2 | exon | 4341714 | 4341890 | 4341714 | ID=MS.gene51967.t1.exon1;Parent=MS.gene51967.t1 |
| chr3.2 | CDS | 4341714 | 4341890 | 4341714 | ID=cds.MS.gene51967.t1;Parent=MS.gene51967.t1 |
| chr3.2 | exon | 4340474 | 4340503 | 4340474 | ID=MS.gene51967.t1.exon2;Parent=MS.gene51967.t1 |
| chr3.2 | CDS | 4340474 | 4340503 | 4340474 | ID=cds.MS.gene51967.t1;Parent=MS.gene51967.t1 |
| chr3.2 | exon | 4340220 | 4340390 | 4340220 | ID=MS.gene51967.t1.exon3;Parent=MS.gene51967.t1 |
| chr3.2 | CDS | 4340220 | 4340390 | 4340220 | ID=cds.MS.gene51967.t1;Parent=MS.gene51967.t1 |
| Gene Sequence |
| Protein sequence |
