Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92650.t1 | KEH33239.1 | 86.9 | 153 | 15 | 2 | 1 | 153 | 8 | 155 | 1.80E-66 | 261.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92650.t1 | Q9FKI4 | 44.2 | 154 | 75 | 4 | 6 | 149 | 2 | 154 | 3.1e-22 | 106.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92650.t1 | A0A072UTR7 | 86.9 | 153 | 15 | 2 | 1 | 153 | 8 | 155 | 1.3e-66 | 261.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene92650.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92650 | MS.gene054186 | PPI |
| MS.gene92650 | MS.gene056257 | PPI |
| MS.gene025927 | MS.gene92650 | PPI |
| MS.gene038837 | MS.gene92650 | PPI |
| MS.gene92650 | MS.gene067362 | PPI |
| MS.gene92650 | MS.gene037362 | PPI |
| MS.gene61498 | MS.gene92650 | PPI |
| MS.gene045843 | MS.gene92650 | PPI |
| MS.gene92650 | MS.gene22814 | PPI |
| MS.gene92650 | MS.gene029211 | PPI |
| MS.gene92650 | MS.gene002540 | PPI |
| MS.gene01518 | MS.gene92650 | PPI |
| MS.gene92650 | MS.gene93131 | PPI |
| MS.gene92650 | MS.gene99744 | PPI |
| MS.gene92650 | MS.gene029242 | PPI |
| MS.gene92650 | MS.gene020996 | PPI |
| MS.gene92650 | MS.gene001986 | PPI |
| MS.gene92650 | MS.gene38111 | PPI |
| MS.gene92650 | MS.gene047400 | PPI |
| MS.gene059422 | MS.gene92650 | PPI |
| MS.gene036800 | MS.gene92650 | PPI |
| MS.gene92650 | MS.gene41916 | PPI |
| MS.gene92650 | MS.gene77827 | PPI |
| MS.gene59047 | MS.gene92650 | PPI |
| MS.gene92650 | MS.gene024463 | PPI |
| MS.gene92650 | MS.gene004214 | PPI |
| MS.gene050629 | MS.gene92650 | PPI |
| MS.gene65650 | MS.gene92650 | PPI |
| MS.gene92650 | MS.gene62426 | PPI |
| MS.gene92650 | MS.gene037324 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92650.t1 | MTR_3g030055 | 86.928 | 153 | 15 | 2 | 1 | 153 | 8 | 155 | 1.15e-92 | 265 |
| MS.gene92650.t1 | MTR_3g030055 | 88.776 | 98 | 9 | 1 | 1 | 98 | 1 | 96 | 3.32e-58 | 177 |
| MS.gene92650.t1 | MTR_3g034200 | 46.795 | 156 | 72 | 4 | 6 | 151 | 2 | 156 | 3.88e-34 | 118 |
| MS.gene92650.t1 | MTR_3g050860 | 38.217 | 157 | 86 | 6 | 1 | 151 | 1 | 152 | 1.70e-17 | 78.2 |
| MS.gene92650.t1 | MTR_0439s0020 | 34.459 | 148 | 86 | 7 | 1 | 142 | 1 | 143 | 2.01e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92650.t1 | AT5G13780 | 43.871 | 155 | 76 | 4 | 6 | 150 | 2 | 155 | 5.90e-30 | 107 |
| MS.gene92650.t1 | AT1G03150 | 28.070 | 114 | 78 | 3 | 35 | 146 | 39 | 150 | 1.72e-11 | 59.3 |
Find 38 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCACAATGTGCCAATATT+CGG | 0.287513 | 3.3:+33732521 | None:intergenic |
| CTCGTTACTCGCCCGAATAT+TGG | 0.335099 | 3.3:-33732533 | MS.gene92650:CDS |
| TGCATAAGAGTTGCAACATT+TGG | 0.337938 | 3.3:-33732587 | MS.gene92650:CDS |
| TCCACAATGTGCCAATATTC+GGG | 0.349965 | 3.3:+33732522 | None:intergenic |
| TCTTGGTTTGTTTCAAAAGA+TGG | 0.379062 | 3.3:-33731610 | MS.gene92650:CDS |
| TGCAACATTTGGAGACGTAT+TGG | 0.394327 | 3.3:-33732576 | MS.gene92650:CDS |
| GATAGGTATGGTGAACGAAT+AGG | 0.421395 | 3.3:+33732393 | None:intergenic |
| CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3.3:+33731563 | None:intergenic |
| ATAGGTATGGTGAACGAATA+GGG | 0.433258 | 3.3:+33732394 | None:intergenic |
| CTCTGAAGGTGAAGAGGAAG+AGG | 0.447607 | 3.3:-33732444 | MS.gene92650:CDS |
| CTTGGTTTGTTTCAAAAGAT+GGG | 0.449922 | 3.3:-33731609 | MS.gene92650:CDS |
| CGCCCAAAACACCATGGAAA+AGG | 0.453353 | 3.3:-33732336 | MS.gene92650:intron |
| AAGACGTTTCAGTGCATGTT+CGG | 0.461363 | 3.3:-33731650 | MS.gene92650:CDS |
| AAGAGCAACTCTGCAGCTCT+TGG | 0.462439 | 3.3:-33731627 | MS.gene92650:CDS |
| CATTTGGAGACGTATTGGAT+TGG | 0.499964 | 3.3:-33732571 | MS.gene92650:CDS |
| AGGAACAATGTCTTCAAAGA+AGG | 0.508100 | 3.3:-33732612 | None:intergenic |
| GTTGCTTACCTCCTCTCTGA+AGG | 0.508220 | 3.3:-33732458 | MS.gene92650:CDS |
| AAGGTGAAGAGGAAGAGGAA+GGG | 0.530803 | 3.3:-33732439 | MS.gene92650:CDS |
| GTCTTGAGGAAGATACTCAA+GGG | 0.554037 | 3.3:-33731531 | MS.gene92650:CDS |
| GAAGGTGAAGAGGAAGAGGA+AGG | 0.556577 | 3.3:-33732440 | MS.gene92650:CDS |
| TGTCTTGAGGAAGATACTCA+AGG | 0.562517 | 3.3:-33731532 | MS.gene92650:CDS |
| CCTCCTCTCTGAAGGTGAAG+AGG | 0.564442 | 3.3:-33732450 | MS.gene92650:CDS |
| GCCCGAATATTGGCACATTG+TGG | 0.568169 | 3.3:-33732523 | MS.gene92650:CDS |
| TTACACACTTCACGAGGTGA+AGG | 0.607853 | 3.3:-33731586 | MS.gene92650:CDS |
| CCTCTTCACCTTCAGAGAGG+AGG | 0.614706 | 3.3:+33732450 | None:intergenic |
| AGGAGGACGCTATTGTCTTG+AGG | 0.615172 | 3.3:-33731545 | MS.gene92650:CDS |
| CACCGCCGCCCAAAACACCA+TGG | 0.620119 | 3.3:-33732342 | MS.gene92650:CDS |
| ATAGGGAGGCGATACTAAAG+TGG | 0.620673 | 3.3:+33732411 | None:intergenic |
| CACCATACCTATCGTAAACG+TGG | 0.631082 | 3.3:-33732383 | MS.gene92650:CDS |
| GAGTGGGTCTCACAGTTAGG+TGG | 0.634645 | 3.3:+33731497 | None:intergenic |
| CTTCCTCTTCACCTTCAGAG+AGG | 0.638002 | 3.3:+33732447 | None:intergenic |
| GAAGAAGCTTATTCATGTCG+CGG | 0.645766 | 3.3:-33732501 | MS.gene92650:CDS |
| TACCACGTTTACGATAGGTA+TGG | 0.651983 | 3.3:+33732381 | None:intergenic |
| AGCGATACCACGTTTACGAT+AGG | 0.681782 | 3.3:+33732376 | None:intergenic |
| TCTTGAGGAAGATACTCAAG+GGG | 0.688967 | 3.3:-33731530 | MS.gene92650:CDS |
| CATGTCGCGGACAATTGCAG+CGG | 0.697708 | 3.3:-33732488 | MS.gene92650:CDS |
| GATGGGTTACACACTTCACG+AGG | 0.713948 | 3.3:-33731592 | MS.gene92650:CDS |
| GGTATGGTGAACGAATAGGG+AGG | 0.789435 | 3.3:+33732397 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTGTTTTTTGGATT+AGG | - | chr3.3:33731830-33731849 | MS.gene92650:intron | 15.0% |
| !!! | TCTGTTATAATTTTGTTTTT+TGG | - | chr3.3:33731824-33731843 | MS.gene92650:intron | 15.0% |
| !!! | AGACTTTTAATGGAAAAAAT+AGG | + | chr3.3:33732412-33732431 | None:intergenic | 20.0% |
| !!! | TTTCTTCTTGTTAATGATTT+TGG | - | chr3.3:33732204-33732223 | MS.gene92650:intron | 20.0% |
| ! | CAACCAAAAACATCAAAAAA+AGG | + | chr3.3:33732383-33732402 | None:intergenic | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | + | chr3.3:33732288-33732307 | None:intergenic | 25.0% |
| !! | ACATTGTAACAGACTTTTAA+TGG | + | chr3.3:33732422-33732441 | None:intergenic | 25.0% |
| !! | ATGGAGTTTGTTTAATGTTT+AGG | - | chr3.3:33731910-33731929 | MS.gene92650:intron | 25.0% |
| !!! | AGACCTTTTTTTGATGTTTT+TGG | - | chr3.3:33732377-33732396 | MS.gene92650:CDS | 25.0% |
| !!! | TTTTCTTGTTTCCTAATCTT+GGG | - | chr3.3:33732303-33732322 | MS.gene92650:intron | 25.0% |
| ACAATGTGTAATTTGACTGA+AGG | - | chr3.3:33732435-33732454 | MS.gene92650:CDS | 30.0% | |
| AGAAAACAGAAAATCATCAC+GGG | + | chr3.3:33732033-33732052 | None:intergenic | 30.0% | |
| CAGAAAACAGAAAATCATCA+CGG | + | chr3.3:33732034-33732053 | None:intergenic | 30.0% | |
| TAATGTTTAGGTATGAAGCT+TGG | - | chr3.3:33731922-33731941 | MS.gene92650:intron | 30.0% | |
| TCCATACATAACCAGTTAAA+AGG | + | chr3.3:33731895-33731914 | None:intergenic | 30.0% | |
| ! | CTTCTTGTTAATGATTTTGG+TGG | - | chr3.3:33732207-33732226 | MS.gene92650:intron | 30.0% |
| ! | TTTCTTGTTTCCTAATCTTG+GGG | - | chr3.3:33732304-33732323 | MS.gene92650:intron | 30.0% |
| !! | CTTGGTTTGTTTCAAAAGAT+GGG | - | chr3.3:33732508-33732527 | MS.gene92650:CDS | 30.0% |
| !! | GTTTTCTTGTTTCCTAATCT+TGG | - | chr3.3:33732302-33732321 | MS.gene92650:intron | 30.0% |
| !! | TCTTGGTTTGTTTCAAAAGA+TGG | - | chr3.3:33732507-33732526 | MS.gene92650:CDS | 30.0% |
| !! | TTGTTAATGATTTTGGTGGT+TGG | - | chr3.3:33732211-33732230 | MS.gene92650:intron | 30.0% |
| AAAACACCATGGAAAAGGTT+AGG | - | chr3.3:33731786-33731805 | MS.gene92650:intron | 35.0% | |
| AACCAAAAGAAAAATCTCGG+AGG | + | chr3.3:33732285-33732304 | None:intergenic | 35.0% | |
| AATCTGAGTTTCACTATGCT+AGG | - | chr3.3:33732058-33732077 | MS.gene92650:intron | 35.0% | |
| ATAGGTATGGTGAACGAATA+GGG | + | chr3.3:33731726-33731745 | None:intergenic | 35.0% | |
| ATGTGTAATTTGACTGAAGG+TGG | - | chr3.3:33732438-33732457 | MS.gene92650:CDS | 35.0% | |
| CTAGGATTATCTTCTATTCC+TGG | - | chr3.3:33732076-33732095 | MS.gene92650:intron | 35.0% | |
| CTCCTCATCATCAAAATACT+TGG | + | chr3.3:33732557-33732576 | None:intergenic | 35.0% | |
| TGCATAAGAGTTGCAACATT+TGG | - | chr3.3:33731530-33731549 | MS.gene92650:CDS | 35.0% | |
| TGTGTAATTTGACTGAAGGT+GGG | - | chr3.3:33732439-33732458 | MS.gene92650:CDS | 35.0% | |
| TTATCTTCTATTCCTGGAAG+TGG | - | chr3.3:33732082-33732101 | MS.gene92650:intron | 35.0% | |
| TTCCACAATGTGCCAATATT+CGG | + | chr3.3:33731599-33731618 | None:intergenic | 35.0% | |
| ! | AACAAACCTAACCTTTTCCA+TGG | + | chr3.3:33731795-33731814 | None:intergenic | 35.0% |
| ! | AACCTTTTCCATGGTGTTTT+GGG | + | chr3.3:33731786-33731805 | None:intergenic | 35.0% |
| ! | CGTGATGATTTTCTGTTTTC+TGG | - | chr3.3:33732032-33732051 | MS.gene92650:intron | 35.0% |
| ! | TAACCTTTTCCATGGTGTTT+TGG | + | chr3.3:33731787-33731806 | None:intergenic | 35.0% |
| ! | TTGGTTGAGTTGTTTCGTTA+GGG | - | chr3.3:33731941-33731960 | MS.gene92650:intron | 35.0% |
| ! | TTTTCAGATAGATCACACAG+TGG | + | chr3.3:33732010-33732029 | None:intergenic | 35.0% |
| !! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3.3:33731891-33731910 | MS.gene92650:intron | 35.0% |
| !! | TTCTGTAGTTAGTCTTGTCT+GGG | - | chr3.3:33732247-33732266 | MS.gene92650:intron | 35.0% |
| !! | TTTCTGTAGTTAGTCTTGTC+TGG | - | chr3.3:33732246-33732265 | MS.gene92650:intron | 35.0% |
| !!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3.3:33732555-33732574 | MS.gene92650:CDS | 35.0% |
| AAACACTTCCCACAGAGAAT+TGG | + | chr3.3:33732162-33732181 | None:intergenic | 40.0% | |
| AAAGGGAGTGGCAATGATTA+GGG | + | chr3.3:33732122-33732141 | None:intergenic | 40.0% | |
| AAGACGTTTCAGTGCATGTT+CGG | - | chr3.3:33732467-33732486 | MS.gene92650:CDS | 40.0% | |
| CATTTGGAGACGTATTGGAT+TGG | - | chr3.3:33731546-33731565 | MS.gene92650:CDS | 40.0% | |
| GAAGAAGCTTATTCATGTCG+CGG | - | chr3.3:33731616-33731635 | MS.gene92650:CDS | 40.0% | |
| GATAGGTATGGTGAACGAAT+AGG | + | chr3.3:33731727-33731746 | None:intergenic | 40.0% | |
| GTCTTGAGGAAGATACTCAA+GGG | - | chr3.3:33732586-33732605 | MS.gene92650:CDS | 40.0% | |
| TAAAGGGAGTGGCAATGATT+AGG | + | chr3.3:33732123-33732142 | None:intergenic | 40.0% | |
| TACCACGTTTACGATAGGTA+TGG | + | chr3.3:33731739-33731758 | None:intergenic | 40.0% | |
| TATTCCTGGAAGTGGTTCTT+CGG | - | chr3.3:33732090-33732109 | MS.gene92650:intron | 40.0% | |
| TCCACAATGTGCCAATATTC+GGG | + | chr3.3:33731598-33731617 | None:intergenic | 40.0% | |
| TCTTGAGGAAGATACTCAAG+GGG | - | chr3.3:33732587-33732606 | MS.gene92650:CDS | 40.0% | |
| TGCAACATTTGGAGACGTAT+TGG | - | chr3.3:33731541-33731560 | MS.gene92650:CDS | 40.0% | |
| TGTCTTGAGGAAGATACTCA+AGG | - | chr3.3:33732585-33732604 | MS.gene92650:CDS | 40.0% | |
| ! | CTTGGTTGAGTTGTTTCGTT+AGG | - | chr3.3:33731940-33731959 | MS.gene92650:intron | 40.0% |
| ! | GGATTAGGTTTGTCACTTGT+GGG | - | chr3.3:33731845-33731864 | MS.gene92650:intron | 40.0% |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | - | chr3.3:33732280-33732299 | MS.gene92650:intron | 40.0% |
| ! | TGGATTAGGTTTGTCACTTG+TGG | - | chr3.3:33731844-33731863 | MS.gene92650:intron | 40.0% |
| ! | TGGTTGAGTTGTTTCGTTAG+GGG | - | chr3.3:33731942-33731961 | MS.gene92650:intron | 40.0% |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | - | chr3.3:33731881-33731900 | MS.gene92650:intron | 40.0% |
| !! | TCTGTAGTTAGTCTTGTCTG+GGG | - | chr3.3:33732248-33732267 | MS.gene92650:intron | 40.0% |
| !!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3.3:33732552-33732571 | MS.gene92650:CDS | 40.0% |
| !!! | TTCTCTGTGGGAAGTGTTTT+TGG | - | chr3.3:33732163-33732182 | MS.gene92650:intron | 40.0% |
| AAAATCCGCACCCCAAGATT+AGG | + | chr3.3:33732317-33732336 | None:intergenic | 45.0% | |
| AAGGTGAAGAGGAAGAGGAA+GGG | - | chr3.3:33731678-33731697 | MS.gene92650:intron | 45.0% | |
| AGCGATACCACGTTTACGAT+AGG | + | chr3.3:33731744-33731763 | None:intergenic | 45.0% | |
| AGGCGAAACCAATTCTCTGT+GGG | - | chr3.3:33732151-33732170 | MS.gene92650:intron | 45.0% | |
| ATAGGGAGGCGATACTAAAG+TGG | + | chr3.3:33731709-33731728 | None:intergenic | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | - | chr3.3:33732127-33732146 | MS.gene92650:intron | 45.0% | |
| CACCATACCTATCGTAAACG+TGG | - | chr3.3:33731734-33731753 | MS.gene92650:intron | 45.0% | |
| TAGCGTATAGGGTGTGGTAT+AGG | - | chr3.3:33731869-33731888 | MS.gene92650:intron | 45.0% | |
| TGTTTCCTAATCTTGGGGTG+CGG | - | chr3.3:33732309-33732328 | MS.gene92650:intron | 45.0% | |
| TTACACACTTCACGAGGTGA+AGG | - | chr3.3:33732531-33732550 | MS.gene92650:CDS | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | - | chr3.3:33732128-33732147 | MS.gene92650:intron | 45.0% | |
| TTTCGCCTCCCACTCATAAA+GGG | + | chr3.3:33732139-33732158 | None:intergenic | 45.0% | |
| ! | TGAGTTGTTTCGTTAGGGGT+GGG | - | chr3.3:33731946-33731965 | MS.gene92650:intron | 45.0% |
| ! | TTGAGTTGTTTCGTTAGGGG+TGG | - | chr3.3:33731945-33731964 | MS.gene92650:intron | 45.0% |
| !! | CACTTGTGGGTTAGCGTATA+GGG | - | chr3.3:33731858-33731877 | MS.gene92650:intron | 45.0% |
| !! | CTTTTCCATGGTGTTTTGGG+CGG | + | chr3.3:33731783-33731802 | None:intergenic | 45.0% |
| !! | TCACTTGTGGGTTAGCGTAT+AGG | - | chr3.3:33731857-33731876 | MS.gene92650:intron | 45.0% |
| AAGAGCAACTCTGCAGCTCT+TGG | - | chr3.3:33732490-33732509 | MS.gene92650:CDS | 50.0% | |
| AAGGTCTGTACAACAGCTGC+CGG | + | chr3.3:33732364-33732383 | None:intergenic | 50.0% | |
| AGGAGGACGCTATTGTCTTG+AGG | - | chr3.3:33732572-33732591 | MS.gene92650:CDS | 50.0% | |
| CGCCCAAAACACCATGGAAA+AGG | - | chr3.3:33731781-33731800 | MS.gene92650:intron | 50.0% | |
| CTCGTTACTCGCCCGAATAT+TGG | - | chr3.3:33731584-33731603 | MS.gene92650:CDS | 50.0% | |
| CTTCCTCTTCACCTTCAGAG+AGG | + | chr3.3:33731673-33731692 | None:intergenic | 50.0% | |
| GAAGGTGAAGAGGAAGAGGA+AGG | - | chr3.3:33731677-33731696 | MS.gene92650:intron | 50.0% | |
| GAGGCGAAACCAATTCTCTG+TGG | - | chr3.3:33732150-33732169 | MS.gene92650:intron | 50.0% | |
| GCCCGAATATTGGCACATTG+TGG | - | chr3.3:33731594-33731613 | MS.gene92650:CDS | 50.0% | |
| GGTATGGTGAACGAATAGGG+AGG | + | chr3.3:33731723-33731742 | None:intergenic | 50.0% | |
| GGTTCTCTCTACCTTGAGAC+CGG | - | chr3.3:33732342-33732361 | MS.gene92650:CDS | 50.0% | |
| GTTGCTTACCTCCTCTCTGA+AGG | - | chr3.3:33731659-33731678 | MS.gene92650:CDS | 50.0% | |
| GTTTCGCCTCCCACTCATAA+AGG | + | chr3.3:33732140-33732159 | None:intergenic | 50.0% | |
| TTCACCGAAGAACCACTTCC+AGG | + | chr3.3:33732097-33732116 | None:intergenic | 50.0% | |
| TTGTTTCGTTAGGGGTGGGA+AGG | - | chr3.3:33731950-33731969 | MS.gene92650:intron | 50.0% | |
| ! | CTCTGAAGGTGAAGAGGAAG+AGG | - | chr3.3:33731673-33731692 | MS.gene92650:intron | 50.0% |
| ! | TTGGGGTGCGGATTTTCTCT+AGG | - | chr3.3:33732321-33732340 | MS.gene92650:intron | 50.0% |
| !! | GATGGGTTACACACTTCACG+AGG | - | chr3.3:33732525-33732544 | MS.gene92650:CDS | 50.0% |
| CATGTCGCGGACAATTGCAG+CGG | - | chr3.3:33731629-33731648 | MS.gene92650:CDS | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | - | chr3.3:33732131-33732150 | MS.gene92650:intron | 55.0% | |
| CCTCCCACTCATAAAGGGAG+TGG | + | chr3.3:33732134-33732153 | None:intergenic | 55.0% | |
| CCTCTTCACCTTCAGAGAGG+AGG | + | chr3.3:33731670-33731689 | None:intergenic | 55.0% | |
| TACAACAGCTGCCGGTCTCA+AGG | + | chr3.3:33732356-33732375 | None:intergenic | 55.0% | |
| ! | CCTCCTCTCTGAAGGTGAAG+AGG | - | chr3.3:33731667-33731686 | MS.gene92650:intron | 55.0% |
| !! | GTCTTGTCTGGGGAGTGTTC+TGG | - | chr3.3:33732258-33732277 | MS.gene92650:intron | 55.0% |
| !! | GTGGGTTAGCGTATAGGGTG+TGG | - | chr3.3:33731863-33731882 | MS.gene92650:intron | 55.0% |
| !! | TTCCATGGTGTTTTGGGCGG+CGG | + | chr3.3:33731780-33731799 | None:intergenic | 55.0% |
| GTGGGAAGGCAGAGTAGGCT+AGG | - | chr3.3:33731964-33731983 | MS.gene92650:intron | 60.0% | |
| TAGGGGTGGGAAGGCAGAGT+AGG | - | chr3.3:33731959-33731978 | MS.gene92650:intron | 60.0% | |
| CACCGCCGCCCAAAACACCA+TGG | - | chr3.3:33731775-33731794 | MS.gene92650:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 33731512 | 33732627 | 33731512 | ID=MS.gene92650 |
| chr3.3 | mRNA | 33731512 | 33732627 | 33731512 | ID=MS.gene92650.t1;Parent=MS.gene92650 |
| chr3.3 | exon | 33732337 | 33732627 | 33732337 | ID=MS.gene92650.t1.exon1;Parent=MS.gene92650.t1 |
| chr3.3 | CDS | 33732337 | 33732627 | 33732337 | ID=cds.MS.gene92650.t1;Parent=MS.gene92650.t1 |
| chr3.3 | exon | 33731512 | 33731682 | 33731512 | ID=MS.gene92650.t1.exon2;Parent=MS.gene92650.t1 |
| chr3.3 | CDS | 33731512 | 33731682 | 33731512 | ID=cds.MS.gene92650.t1;Parent=MS.gene92650.t1 |
| Gene Sequence |
| Protein sequence |
