Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023795.t1 | XP_003623840.1 | 96.4 | 560 | 20 | 0 | 1 | 560 | 1 | 560 | 2.20E-234 | 821.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023795.t1 | O81902 | 30.2 | 172 | 110 | 5 | 344 | 511 | 118 | 283 | 6.6e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023795.t1 | A2Q5C9 | 96.4 | 560 | 20 | 0 | 1 | 560 | 1 | 560 | 1.6e-234 | 821.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene41659 | MS.gene023795 | PPI |
| MS.gene052565 | MS.gene023795 | PPI |
| MS.gene023795 | MS.gene06253 | PPI |
| MS.gene023795 | MS.gene052564 | PPI |
| MS.gene055531 | MS.gene023795 | PPI |
| MS.gene013180 | MS.gene023795 | PPI |
| MS.gene023795 | MS.gene28664 | PPI |
| MS.gene023795 | MS.gene32213 | PPI |
| MS.gene33842 | MS.gene023795 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023795.t1 | MTR_7g076220 | 96.786 | 560 | 18 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1091 |
| MS.gene023795.t1 | MTR_8g032570 | 77.128 | 564 | 122 | 3 | 1 | 560 | 1 | 561 | 0.0 | 876 |
| MS.gene023795.t1 | MTR_8g032570 | 77.128 | 564 | 122 | 3 | 1 | 560 | 24 | 584 | 0.0 | 875 |
| MS.gene023795.t1 | MTR_3g098730 | 33.581 | 539 | 330 | 11 | 34 | 559 | 30 | 553 | 4.61e-77 | 254 |
| MS.gene023795.t1 | MTR_4g091320 | 30.123 | 571 | 346 | 14 | 17 | 556 | 22 | 570 | 8.23e-63 | 216 |
| MS.gene023795.t1 | MTR_5g092900 | 43.333 | 120 | 33 | 3 | 371 | 490 | 32 | 116 | 1.58e-16 | 76.3 |
| MS.gene023795.t1 | MTR_4g007850 | 34.868 | 152 | 96 | 3 | 408 | 556 | 364 | 515 | 2.28e-14 | 76.3 |
| MS.gene023795.t1 | MTR_1g069845 | 30.081 | 246 | 159 | 8 | 237 | 477 | 363 | 600 | 6.32e-14 | 75.1 |
| MS.gene023795.t1 | MTR_1g069845 | 30.081 | 246 | 159 | 8 | 237 | 477 | 480 | 717 | 6.83e-14 | 75.1 |
| MS.gene023795.t1 | MTR_1g069845 | 30.081 | 246 | 159 | 8 | 237 | 477 | 484 | 721 | 7.16e-14 | 75.1 |
| MS.gene023795.t1 | MTR_7g078330 | 27.574 | 272 | 189 | 6 | 167 | 433 | 378 | 646 | 1.12e-13 | 74.3 |
| MS.gene023795.t1 | MTR_3g466220 | 26.429 | 280 | 195 | 4 | 156 | 429 | 553 | 827 | 4.00e-13 | 72.8 |
| MS.gene023795.t1 | MTR_1g018180 | 23.701 | 308 | 192 | 6 | 156 | 461 | 61 | 327 | 4.84e-13 | 70.9 |
| MS.gene023795.t1 | MTR_3g466220 | 26.429 | 280 | 195 | 4 | 156 | 429 | 532 | 806 | 5.03e-13 | 72.4 |
| MS.gene023795.t1 | MTR_7g097020 | 25.526 | 333 | 205 | 6 | 137 | 468 | 464 | 754 | 8.88e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023795.t1 | AT2G45720 | 66.727 | 550 | 171 | 3 | 12 | 560 | 15 | 553 | 0.0 | 749 |
| MS.gene023795.t1 | AT2G45720 | 66.727 | 550 | 171 | 3 | 12 | 560 | 15 | 553 | 0.0 | 749 |
| MS.gene023795.t1 | AT2G45720 | 66.727 | 550 | 171 | 3 | 12 | 560 | 15 | 553 | 0.0 | 749 |
| MS.gene023795.t1 | AT2G45720 | 66.727 | 550 | 171 | 3 | 12 | 560 | 15 | 553 | 0.0 | 749 |
| MS.gene023795.t1 | AT2G45720 | 66.727 | 550 | 171 | 3 | 12 | 560 | 15 | 553 | 0.0 | 749 |
| MS.gene023795.t1 | AT1G01830 | 63.899 | 554 | 192 | 4 | 8 | 559 | 27 | 574 | 0.0 | 678 |
| MS.gene023795.t1 | AT1G01830 | 63.899 | 554 | 192 | 4 | 8 | 559 | 27 | 574 | 0.0 | 678 |
| MS.gene023795.t1 | AT1G01830 | 63.899 | 554 | 192 | 4 | 8 | 559 | 27 | 574 | 0.0 | 678 |
| MS.gene023795.t1 | AT5G50900 | 36.976 | 549 | 326 | 8 | 22 | 559 | 15 | 554 | 3.38e-103 | 322 |
| MS.gene023795.t1 | AT1G61350 | 30.000 | 550 | 342 | 14 | 35 | 556 | 32 | 566 | 8.55e-64 | 219 |
| MS.gene023795.t1 | AT2G05810 | 33.333 | 540 | 336 | 14 | 34 | 557 | 41 | 572 | 3.41e-51 | 185 |
| MS.gene023795.t1 | AT2G05810 | 33.333 | 540 | 336 | 14 | 34 | 557 | 41 | 572 | 3.41e-51 | 185 |
| MS.gene023795.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 543 | 815 | 2.93e-17 | 85.9 |
| MS.gene023795.t1 | AT2G23140 | 26.275 | 255 | 147 | 4 | 237 | 491 | 583 | 796 | 3.69e-11 | 66.6 |
| MS.gene023795.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 543 | 815 | 2.93e-17 | 85.9 |
| MS.gene023795.t1 | AT2G23140 | 26.275 | 255 | 147 | 4 | 237 | 491 | 583 | 796 | 3.69e-11 | 66.6 |
| MS.gene023795.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 546 | 818 | 3.29e-17 | 85.9 |
| MS.gene023795.t1 | AT2G23140 | 26.275 | 255 | 147 | 4 | 237 | 491 | 586 | 799 | 4.10e-11 | 66.2 |
| MS.gene023795.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 354 | 626 | 6.01e-17 | 84.7 |
| MS.gene023795.t1 | AT2G23140 | 26.400 | 250 | 143 | 4 | 242 | 491 | 399 | 607 | 5.15e-11 | 65.9 |
| MS.gene023795.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 354 | 626 | 6.01e-17 | 84.7 |
| MS.gene023795.t1 | AT2G23140 | 26.400 | 250 | 143 | 4 | 242 | 491 | 399 | 607 | 5.15e-11 | 65.9 |
| MS.gene023795.t1 | AT3G54790 | 30.466 | 279 | 175 | 9 | 206 | 479 | 454 | 718 | 2.60e-16 | 82.8 |
| MS.gene023795.t1 | AT3G54790 | 30.466 | 279 | 175 | 9 | 206 | 479 | 490 | 754 | 4.25e-16 | 82.4 |
| MS.gene023795.t1 | AT3G54790 | 30.466 | 279 | 175 | 9 | 206 | 479 | 490 | 754 | 4.25e-16 | 82.4 |
| MS.gene023795.t1 | AT3G46510 | 26.990 | 289 | 199 | 5 | 154 | 435 | 352 | 635 | 2.28e-13 | 73.6 |
| MS.gene023795.t1 | AT2G28830 | 27.304 | 293 | 197 | 7 | 153 | 435 | 282 | 568 | 5.09e-13 | 72.0 |
| MS.gene023795.t1 | AT1G71020 | 26.740 | 273 | 191 | 5 | 156 | 423 | 195 | 463 | 1.51e-11 | 67.4 |
| MS.gene023795.t1 | AT1G71020 | 26.740 | 273 | 191 | 5 | 156 | 423 | 343 | 611 | 2.50e-11 | 67.0 |
| MS.gene023795.t1 | AT5G58680 | 25.279 | 269 | 161 | 2 | 233 | 501 | 99 | 327 | 2.89e-11 | 65.9 |
| MS.gene023795.t1 | AT3G01400 | 26.923 | 286 | 190 | 10 | 152 | 424 | 56 | 335 | 5.40e-11 | 64.7 |
Find 100 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGAGGTGAGACAGATTT+TGG | 0.191099 | 7.1:+27004978 | MS.gene023795:CDS |
| GATAAAGCAAAAGAGGTTAA+AGG | 0.250953 | 7.1:+27004139 | MS.gene023795:CDS |
| TGATAAAAGTGTGCCTAATT+TGG | 0.258642 | 7.1:+27005497 | MS.gene023795:CDS |
| ACATTCTGCTGCATATTCTT+TGG | 0.259181 | 7.1:-27005061 | None:intergenic |
| TCAAGTAACTGAACCAAATT+AGG | 0.283449 | 7.1:-27005510 | None:intergenic |
| GGATGCATTAATCGGGAAAA+TGG | 0.303126 | 7.1:+27004372 | MS.gene023795:CDS |
| GATAAGTTTGATAACATTGA+TGG | 0.317226 | 7.1:-27004208 | None:intergenic |
| ATGATCTCATATGGTGCTAT+TGG | 0.322689 | 7.1:+27005615 | MS.gene023795:CDS |
| AGTCGCAGCGTTAAGGAATT+TGG | 0.341238 | 7.1:+27005194 | MS.gene023795:CDS |
| TTTGCTTTATCAAGAGCAAT+AGG | 0.341641 | 7.1:-27004127 | None:intergenic |
| CTTATAAGACTTGTTGAATC+AGG | 0.347476 | 7.1:+27004778 | MS.gene023795:CDS |
| TTAACTTGTGGAATGTTGTT+AGG | 0.364935 | 7.1:+27005036 | MS.gene023795:CDS |
| TTAAATGCGTCTTCCGTGTC+AGG | 0.372955 | 7.1:+27004460 | MS.gene023795:CDS |
| GGGAAATTAAGAAGTTTGTT+TGG | 0.376831 | 7.1:+27005705 | MS.gene023795:CDS |
| TTGGTTCACGTGTTGAAATC+CGG | 0.379042 | 7.1:+27005267 | MS.gene023795:CDS |
| TATATGCTCGCTAGCCGAAT+CGG | 0.388263 | 7.1:+27004711 | MS.gene023795:CDS |
| TCTTTGCAAGGAACAATTGC+AGG | 0.392824 | 7.1:+27004258 | MS.gene023795:CDS |
| TTGCATTCCTCTCCTTGTTA+AGG | 0.392937 | 7.1:+27005377 | MS.gene023795:CDS |
| AGAAGATGAAAAGAATGTTT+TGG | 0.395867 | 7.1:+27004603 | MS.gene023795:CDS |
| GCTAGGATTACTTCCTCGTT+TGG | 0.400683 | 7.1:+27005248 | MS.gene023795:CDS |
| AGTGATCTGGATGCATTAAT+CGG | 0.402558 | 7.1:+27004364 | MS.gene023795:CDS |
| ACATGGTGGCGTTTGTCCTT+TGG | 0.402833 | 7.1:+27004882 | MS.gene023795:CDS |
| AAATATGCAGTTACATGCCT+TGG | 0.403305 | 7.1:+27005558 | MS.gene023795:CDS |
| TTGTATCGGAAGGCGGTGTT+AGG | 0.403815 | 7.1:+27005127 | MS.gene023795:CDS |
| TTGGTTGAGCTTTGTCGAAC+CGG | 0.410474 | 7.1:+27004901 | MS.gene023795:CDS |
| TGCTCTTGATAAAGCAAAAG+AGG | 0.413222 | 7.1:+27004132 | MS.gene023795:CDS |
| CAGGAGCAACATTGCTGCAC+TGG | 0.435703 | 7.1:+27004636 | MS.gene023795:CDS |
| ACTTCAGATGCAGAGTGATC+TGG | 0.435997 | 7.1:+27004351 | MS.gene023795:CDS |
| ATATACTTTCAACAGAAGAT+TGG | 0.437674 | 7.1:+27004080 | MS.gene023795:CDS |
| TACATGAGAGATTGGAAAGA+GGG | 0.441315 | 7.1:+27005685 | MS.gene023795:CDS |
| CAGTAGCCCACAACAACATA+AGG | 0.443924 | 7.1:+27004503 | MS.gene023795:CDS |
| ATATGCTCGCTAGCCGAATC+GGG | 0.444293 | 7.1:+27004712 | MS.gene023795:CDS |
| AATCTGCAGTCGCAGCGTTA+AGG | 0.448445 | 7.1:+27005187 | MS.gene023795:CDS |
| AGAAGCGAAGCACAAAGCTT+TGG | 0.451007 | 7.1:+27004558 | MS.gene023795:CDS |
| CTCAAAGAATGCTCTTTGCA+AGG | 0.456555 | 7.1:+27004246 | MS.gene023795:CDS |
| GTGTTGAAATCCGGCTCCCC+AGG | 0.465743 | 7.1:+27005276 | MS.gene023795:CDS |
| GTAACTCCCTTATGTTGTTG+TGG | 0.467574 | 7.1:-27004510 | None:intergenic |
| TAACTCCCTTATGTTGTTGT+GGG | 0.470411 | 7.1:-27004509 | None:intergenic |
| TTGATCAGAACTGGTATGCT+TGG | 0.472449 | 7.1:+27004421 | MS.gene023795:CDS |
| ATGATCAATTTGTTAACTTG+TGG | 0.475541 | 7.1:+27005024 | MS.gene023795:CDS |
| CAGCGTTAAGGAATTTGGTC+AGG | 0.483288 | 7.1:+27005199 | MS.gene023795:CDS |
| GACACGGAAGACGCATTTAA+CGG | 0.483292 | 7.1:-27004457 | None:intergenic |
| GCGTTGTCGAAGTCGCTTGA+AGG | 0.483797 | 7.1:+27004280 | MS.gene023795:CDS |
| AACAAGGATAAGAGAGAAAA+CGG | 0.487702 | 7.1:+27004681 | MS.gene023795:CDS |
| ATCAAAATCATGGTGGAAGA+TGG | 0.488379 | 7.1:+27004046 | None:intergenic |
| CTTCTAAGTGACCGATCTGA+AGG | 0.491857 | 7.1:-27004540 | None:intergenic |
| AAGAAGCTAATGATCTCATA+TGG | 0.492681 | 7.1:+27005606 | MS.gene023795:CDS |
| AACCGGCGATTCTGTTTCGC+AGG | 0.502115 | 7.1:+27004918 | MS.gene023795:CDS |
| GCCAAAATCTGTCTCACCTC+AGG | 0.503593 | 7.1:-27004979 | None:intergenic |
| ATCCTCGCAGCTACCCGATT+CGG | 0.503854 | 7.1:-27004725 | None:intergenic |
| TTTGAAGAAACTTACTGAGA+TGG | 0.503997 | 7.1:+27005641 | MS.gene023795:CDS |
| GATTTGAATTTACGAGATTG+TGG | 0.508625 | 7.1:+27004394 | MS.gene023795:CDS |
| TCTCCTTGTTAAGGTGCTTG+AGG | 0.512870 | 7.1:+27005386 | MS.gene023795:CDS |
| AACAAGGAGAGGAATGCAAC+CGG | 0.520728 | 7.1:-27005373 | None:intergenic |
| ACTGCAGATTCTTGAGGAAG+TGG | 0.523180 | 7.1:-27005174 | None:intergenic |
| GATTCAACAAGTCTTATAAG+AGG | 0.524542 | 7.1:-27004775 | None:intergenic |
| AATCGGGTAGCTGCGAGGAT+TGG | 0.524824 | 7.1:+27004728 | MS.gene023795:CDS |
| AGAGCATTCTTTGAGAAACA+TGG | 0.525223 | 7.1:-27004238 | None:intergenic |
| TAATAGAAGAGAAGTTAAGA+AGG | 0.531726 | 7.1:+27005473 | MS.gene023795:CDS |
| AGCTTTGGACAGTGTTGTTG+AGG | 0.533166 | 7.1:+27004573 | MS.gene023795:CDS |
| TTACATGAGAGATTGGAAAG+AGG | 0.535319 | 7.1:+27005684 | MS.gene023795:CDS |
| GTTACAAAGGTTATCAATGT+CGG | 0.540691 | 7.1:+27004834 | MS.gene023795:CDS |
| GTGATCTGGATGCATTAATC+GGG | 0.542255 | 7.1:+27004365 | MS.gene023795:CDS |
| AGATTGGTTGTTACATGCAA+AGG | 0.544625 | 7.1:+27004096 | MS.gene023795:CDS |
| GAGACAGCTTTGATTTCGCT+AGG | 0.547390 | 7.1:+27005231 | MS.gene023795:CDS |
| AAGTGCTGTAGGTAAAGAAA+AGG | 0.552308 | 7.1:+27004801 | MS.gene023795:CDS |
| TTTCTGTCGAGCTGCTAACT+CGG | 0.563543 | 7.1:-27005329 | None:intergenic |
| GTTGAATCAGGAAGTGCTGT+AGG | 0.569401 | 7.1:+27004790 | MS.gene023795:CDS |
| TCGCGTGAAATCGTCGGACA+TGG | 0.579937 | 7.1:+27004865 | MS.gene023795:CDS |
| GTTAAGGAATTTGGTCAGGT+CGG | 0.582359 | 7.1:+27005203 | MS.gene023795:CDS |
| GAGGATTGGCTAGTTTCTGA+AGG | 0.584950 | 7.1:+27004742 | MS.gene023795:CDS |
| AGTAGCCCACAACAACATAA+GGG | 0.590757 | 7.1:+27004504 | MS.gene023795:CDS |
| CATTCTTTGAGAAACATGGA+TGG | 0.592010 | 7.1:-27004234 | None:intergenic |
| TCAACAAGTCTTATAAGAGG+TGG | 0.596638 | 7.1:-27004772 | None:intergenic |
| TAACCTTTGTAACGATATTG+CGG | 0.602955 | 7.1:-27004824 | None:intergenic |
| TAGCCTCAAGCACCTTAACA+AGG | 0.603571 | 7.1:-27005389 | None:intergenic |
| TGGCTCAAGAAGGGATTGTG+AGG | 0.604275 | 7.1:+27004998 | MS.gene023795:CDS |
| GACTCTCATTGCTTGCAGTG+AGG | 0.605442 | 7.1:-27005092 | None:intergenic |
| AGCCTGCGAAACAGAATCGC+CGG | 0.607149 | 7.1:-27004920 | None:intergenic |
| AGTCTCTTAGCATATCTTGA+CGG | 0.608560 | 7.1:+27005150 | MS.gene023795:CDS |
| GGCTCAAGAAGGGATTGTGA+GGG | 0.611614 | 7.1:+27004999 | MS.gene023795:CDS |
| AGGCCGCAATATCGTTACAA+AGG | 0.614068 | 7.1:+27004821 | MS.gene023795:CDS |
| GAATATTTCAGCTGTTCCTG+AGG | 0.614185 | 7.1:+27004963 | MS.gene023795:CDS |
| TTCTGTCGCAGAACCTGACA+CGG | 0.614968 | 7.1:-27004473 | None:intergenic |
| GCTGCGACTGCAGATTCTTG+AGG | 0.624141 | 7.1:-27005180 | None:intergenic |
| TTACTTGCGCGCCTTCAGAT+CGG | 0.624802 | 7.1:+27004529 | MS.gene023795:CDS |
| TCGGCAGATTGCTGACGCAG+CGG | 0.628367 | 7.1:-27005310 | None:intergenic |
| TCAAGCACCTTAACAAGGAG+AGG | 0.629769 | 7.1:-27005384 | None:intergenic |
| TTCAACACGTGAACCAAACG+AGG | 0.632931 | 7.1:-27005261 | None:intergenic |
| GAAACATCGCGTGAAATCGT+CGG | 0.634754 | 7.1:+27004859 | MS.gene023795:CDS |
| TACTTGAAGAAATCAATCCA+AGG | 0.635931 | 7.1:-27005575 | None:intergenic |
| TGTGTGAAGGAGAAGTATGA+AGG | 0.638552 | 7.1:+27004325 | MS.gene023795:CDS |
| CAGAACTGGTATGCTTGGCG+AGG | 0.641538 | 7.1:+27004426 | MS.gene023795:CDS |
| ATCAGCTGAATTGTGTGTGA+AGG | 0.643275 | 7.1:+27004312 | MS.gene023795:CDS |
| CTTACTGAGATGGATACTCC+AGG | 0.657141 | 7.1:+27005651 | MS.gene023795:CDS |
| AGCCGAATCGGGTAGCTGCG+AGG | 0.659711 | 7.1:+27004723 | MS.gene023795:CDS |
| CGTGAAATCGTCGGACATGG+TGG | 0.660194 | 7.1:+27004868 | MS.gene023795:CDS |
| GTTCGACAAAGCTCAACCAA+AGG | 0.661790 | 7.1:-27004898 | None:intergenic |
| AAAAGCGTTGTATCGGAAGG+CGG | 0.673101 | 7.1:+27005120 | MS.gene023795:CDS |
| TACTTACAGCAACATCAACA+AGG | 0.680317 | 7.1:+27004665 | MS.gene023795:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTGCATTGTTTTG+AGG | - | chr7.1:27005543-27005562 | None:intergenic | 20.0% |
| ! | ACAGAAATGAAAAAATTGGT+CGG | + | chr7.1:27005345-27005364 | MS.gene023795:CDS | 25.0% |
| ! | ATATACTTTCAACAGAAGAT+TGG | + | chr7.1:27004080-27004099 | MS.gene023795:CDS | 25.0% |
| ! | TAAAAAGTTACATGAGAGAT+TGG | + | chr7.1:27005677-27005696 | MS.gene023795:CDS | 25.0% |
| ! | TAATAGAAGAGAAGTTAAGA+AGG | + | chr7.1:27005473-27005492 | MS.gene023795:CDS | 25.0% |
| !! | AGAAGATGAAAAGAATGTTT+TGG | + | chr7.1:27004603-27004622 | MS.gene023795:CDS | 25.0% |
| !! | GATAAGTTTGATAACATTGA+TGG | - | chr7.1:27004211-27004230 | None:intergenic | 25.0% |
| !!! | ATGATCAATTTGTTAACTTG+TGG | + | chr7.1:27005024-27005043 | MS.gene023795:CDS | 25.0% |
| !!! | TCTAAAAAAAAGCGTTGTAT+CGG | + | chr7.1:27005113-27005132 | MS.gene023795:CDS | 25.0% |
| AACAAGGATAAGAGAGAAAA+CGG | + | chr7.1:27004681-27004700 | MS.gene023795:CDS | 30.0% | |
| AAGAAGCTAATGATCTCATA+TGG | + | chr7.1:27005606-27005625 | MS.gene023795:CDS | 30.0% | |
| CTCGACAGAAATGAAAAAAT+TGG | + | chr7.1:27005341-27005360 | MS.gene023795:CDS | 30.0% | |
| GATAAAGCAAAAGAGGTTAA+AGG | + | chr7.1:27004139-27004158 | MS.gene023795:CDS | 30.0% | |
| GATTTGAATTTACGAGATTG+TGG | + | chr7.1:27004394-27004413 | MS.gene023795:CDS | 30.0% | |
| GTTACAAAGGTTATCAATGT+CGG | + | chr7.1:27004834-27004853 | MS.gene023795:CDS | 30.0% | |
| TAACCTTTGTAACGATATTG+CGG | - | chr7.1:27004827-27004846 | None:intergenic | 30.0% | |
| TACTTGAAGAAATCAATCCA+AGG | - | chr7.1:27005578-27005597 | None:intergenic | 30.0% | |
| TCAAGTAACTGAACCAAATT+AGG | - | chr7.1:27005513-27005532 | None:intergenic | 30.0% | |
| TTTGAAGAAACTTACTGAGA+TGG | + | chr7.1:27005641-27005660 | MS.gene023795:CDS | 30.0% | |
| TTTGCTTTATCAAGAGCAAT+AGG | - | chr7.1:27004130-27004149 | None:intergenic | 30.0% | |
| ! | ATGATCATTTTCCATCTAGT+AGG | - | chr7.1:27004169-27004188 | None:intergenic | 30.0% |
| ! | GATTCAACAAGTCTTATAAG+AGG | - | chr7.1:27004778-27004797 | None:intergenic | 30.0% |
| ! | GGGAAATTAAGAAGTTTGTT+TGG | + | chr7.1:27005705-27005724 | MS.gene023795:CDS | 30.0% |
| ! | TGATAAAAGTGTGCCTAATT+TGG | + | chr7.1:27005497-27005516 | MS.gene023795:CDS | 30.0% |
| ! | TTAAAGGTTTTCCTACTAGA+TGG | + | chr7.1:27004155-27004174 | MS.gene023795:CDS | 30.0% |
| !! | CTTATAAGACTTGTTGAATC+AGG | + | chr7.1:27004778-27004797 | MS.gene023795:CDS | 30.0% |
| !! | TTAACTTGTGGAATGTTGTT+AGG | + | chr7.1:27005036-27005055 | MS.gene023795:CDS | 30.0% |
| AAATATGCAGTTACATGCCT+TGG | + | chr7.1:27005558-27005577 | MS.gene023795:CDS | 35.0% | |
| ACATTCTGCTGCATATTCTT+TGG | - | chr7.1:27005064-27005083 | None:intergenic | 35.0% | |
| AGTCTCTTAGCATATCTTGA+CGG | + | chr7.1:27005150-27005169 | MS.gene023795:CDS | 35.0% | |
| AGTGATCTGGATGCATTAAT+CGG | + | chr7.1:27004364-27004383 | MS.gene023795:CDS | 35.0% | |
| TAACTCCCTTATGTTGTTGT+GGG | - | chr7.1:27004512-27004531 | None:intergenic | 35.0% | |
| TACATGAGAGATTGGAAAGA+GGG | + | chr7.1:27005685-27005704 | MS.gene023795:CDS | 35.0% | |
| TACTTACAGCAACATCAACA+AGG | + | chr7.1:27004665-27004684 | MS.gene023795:CDS | 35.0% | |
| TGCTCTTGATAAAGCAAAAG+AGG | + | chr7.1:27004132-27004151 | MS.gene023795:CDS | 35.0% | |
| TTACATGAGAGATTGGAAAG+AGG | + | chr7.1:27005684-27005703 | MS.gene023795:CDS | 35.0% | |
| ! | AAGTGCTGTAGGTAAAGAAA+AGG | + | chr7.1:27004801-27004820 | MS.gene023795:CDS | 35.0% |
| ! | AGAGCATTCTTTGAGAAACA+TGG | - | chr7.1:27004241-27004260 | None:intergenic | 35.0% |
| ! | AGATTGGTTGTTACATGCAA+AGG | + | chr7.1:27004096-27004115 | MS.gene023795:CDS | 35.0% |
| ! | CATTCTTTGAGAAACATGGA+TGG | - | chr7.1:27004237-27004256 | None:intergenic | 35.0% |
| ! | TCAACAAGTCTTATAAGAGG+TGG | - | chr7.1:27004775-27004794 | None:intergenic | 35.0% |
| !! | AAAAAAAGCGTTGTATCGGA+AGG | + | chr7.1:27005117-27005136 | MS.gene023795:CDS | 35.0% |
| !! | ATGATCTCATATGGTGCTAT+TGG | + | chr7.1:27005615-27005634 | MS.gene023795:CDS | 35.0% |
| !! | TCATGTAACTTTTTAGCACC+TGG | - | chr7.1:27005672-27005691 | None:intergenic | 35.0% |
| !!! | ATGTTTTGGCTGTTTTTAGC+AGG | + | chr7.1:27004617-27004636 | MS.gene023795:CDS | 35.0% |
| !!! | TTTGCATTGTTTTGAGGACT+AGG | - | chr7.1:27005537-27005556 | None:intergenic | 35.0% |
| AGTAGCCCACAACAACATAA+GGG | + | chr7.1:27004504-27004523 | MS.gene023795:CDS | 40.0% | |
| ATCAGCTGAATTGTGTGTGA+AGG | + | chr7.1:27004312-27004331 | MS.gene023795:CDS | 40.0% | |
| CTCAAAGAATGCTCTTTGCA+AGG | + | chr7.1:27004246-27004265 | MS.gene023795:CDS | 40.0% | |
| GAATATTTCAGCTGTTCCTG+AGG | + | chr7.1:27004963-27004982 | MS.gene023795:CDS | 40.0% | |
| GGATGCATTAATCGGGAAAA+TGG | + | chr7.1:27004372-27004391 | MS.gene023795:CDS | 40.0% | |
| GTAACTCCCTTATGTTGTTG+TGG | - | chr7.1:27004513-27004532 | None:intergenic | 40.0% | |
| GTGATCTGGATGCATTAATC+GGG | + | chr7.1:27004365-27004384 | MS.gene023795:CDS | 40.0% | |
| GTTAAGGAATTTGGTCAGGT+CGG | + | chr7.1:27005203-27005222 | MS.gene023795:CDS | 40.0% | |
| TCTTTGCAAGGAACAATTGC+AGG | + | chr7.1:27004258-27004277 | MS.gene023795:CDS | 40.0% | |
| TTGATCAGAACTGGTATGCT+TGG | + | chr7.1:27004421-27004440 | MS.gene023795:CDS | 40.0% | |
| TTGCATTCCTCTCCTTGTTA+AGG | + | chr7.1:27005377-27005396 | MS.gene023795:CDS | 40.0% | |
| TTGGTTCACGTGTTGAAATC+CGG | + | chr7.1:27005267-27005286 | MS.gene023795:CDS | 40.0% | |
| ! | TGTGGACTTTTGATCAGAAC+TGG | + | chr7.1:27004412-27004431 | MS.gene023795:CDS | 40.0% |
| ! | TGTGTGAAGGAGAAGTATGA+AGG | + | chr7.1:27004325-27004344 | MS.gene023795:CDS | 40.0% |
| !!! | AGACAGATTTTGGCTCAAGA+AGG | + | chr7.1:27004988-27005007 | MS.gene023795:CDS | 40.0% |
| !!! | GACAGATTTTGGCTCAAGAA+GGG | + | chr7.1:27004989-27005008 | MS.gene023795:CDS | 40.0% |
| AAAAAATTGGTCGGCGAAGC+CGG | + | chr7.1:27005354-27005373 | MS.gene023795:CDS | 45.0% | |
| AACAAGGAGAGGAATGCAAC+CGG | - | chr7.1:27005376-27005395 | None:intergenic | 45.0% | |
| ACTGCAGATTCTTGAGGAAG+TGG | - | chr7.1:27005177-27005196 | None:intergenic | 45.0% | |
| ACTTCAGATGCAGAGTGATC+TGG | + | chr7.1:27004351-27004370 | MS.gene023795:CDS | 45.0% | |
| AGAAGCGAAGCACAAAGCTT+TGG | + | chr7.1:27004558-27004577 | MS.gene023795:CDS | 45.0% | |
| AGGCCGCAATATCGTTACAA+AGG | + | chr7.1:27004821-27004840 | MS.gene023795:CDS | 45.0% | |
| AGTCGCAGCGTTAAGGAATT+TGG | + | chr7.1:27005194-27005213 | MS.gene023795:CDS | 45.0% | |
| CAGCGTTAAGGAATTTGGTC+AGG | + | chr7.1:27005199-27005218 | MS.gene023795:CDS | 45.0% | |
| CAGTAGCCCACAACAACATA+AGG | + | chr7.1:27004503-27004522 | MS.gene023795:CDS | 45.0% | |
| CTTACTGAGATGGATACTCC+AGG | + | chr7.1:27005651-27005670 | MS.gene023795:CDS | 45.0% | |
| CTTCTAAGTGACCGATCTGA+AGG | - | chr7.1:27004543-27004562 | None:intergenic | 45.0% | |
| GAAACATCGCGTGAAATCGT+CGG | + | chr7.1:27004859-27004878 | MS.gene023795:CDS | 45.0% | |
| GACACGGAAGACGCATTTAA+CGG | - | chr7.1:27004460-27004479 | None:intergenic | 45.0% | |
| GCTAGGATTACTTCCTCGTT+TGG | + | chr7.1:27005248-27005267 | MS.gene023795:CDS | 45.0% | |
| GTTCGACAAAGCTCAACCAA+AGG | - | chr7.1:27004901-27004920 | None:intergenic | 45.0% | |
| TAGCCTCAAGCACCTTAACA+AGG | - | chr7.1:27005392-27005411 | None:intergenic | 45.0% | |
| TATATGCTCGCTAGCCGAAT+CGG | + | chr7.1:27004711-27004730 | MS.gene023795:CDS | 45.0% | |
| TCAAGCACCTTAACAAGGAG+AGG | - | chr7.1:27005387-27005406 | None:intergenic | 45.0% | |
| TTAAATGCGTCTTCCGTGTC+AGG | + | chr7.1:27004460-27004479 | MS.gene023795:CDS | 45.0% | |
| TTCAACACGTGAACCAAACG+AGG | - | chr7.1:27005264-27005283 | None:intergenic | 45.0% | |
| TTTCTGTCGAGCTGCTAACT+CGG | - | chr7.1:27005332-27005351 | None:intergenic | 45.0% | |
| ! | GAGACAGCTTTGATTTCGCT+AGG | + | chr7.1:27005231-27005250 | MS.gene023795:CDS | 45.0% |
| ! | TCCTGAGGTGAGACAGATTT+TGG | + | chr7.1:27004978-27004997 | MS.gene023795:CDS | 45.0% |
| ! | TCTCCTTGTTAAGGTGCTTG+AGG | + | chr7.1:27005386-27005405 | MS.gene023795:CDS | 45.0% |
| ! | TTGGTTGAGCTTTGTCGAAC+CGG | + | chr7.1:27004901-27004920 | MS.gene023795:CDS | 45.0% |
| !! | AAAAGCGTTGTATCGGAAGG+CGG | + | chr7.1:27005120-27005139 | MS.gene023795:CDS | 45.0% |
| !! | AGCTTTGGACAGTGTTGTTG+AGG | + | chr7.1:27004573-27004592 | MS.gene023795:CDS | 45.0% |
| !! | GAGGATTGGCTAGTTTCTGA+AGG | + | chr7.1:27004742-27004761 | MS.gene023795:CDS | 45.0% |
| !! | GTTGAATCAGGAAGTGCTGT+AGG | + | chr7.1:27004790-27004809 | MS.gene023795:CDS | 45.0% |
| AATCTGCAGTCGCAGCGTTA+AGG | + | chr7.1:27005187-27005206 | MS.gene023795:CDS | 50.0% | |
| ATATGCTCGCTAGCCGAATC+GGG | + | chr7.1:27004712-27004731 | MS.gene023795:CDS | 50.0% | |
| GACTCTCATTGCTTGCAGTG+AGG | - | chr7.1:27005095-27005114 | None:intergenic | 50.0% | |
| GCCAAAATCTGTCTCACCTC+AGG | - | chr7.1:27004982-27005001 | None:intergenic | 50.0% | |
| GGCTCAAGAAGGGATTGTGA+GGG | + | chr7.1:27004999-27005018 | MS.gene023795:CDS | 50.0% | |
| TGGCTCAAGAAGGGATTGTG+AGG | + | chr7.1:27004998-27005017 | MS.gene023795:CDS | 50.0% | |
| TTACTTGCGCGCCTTCAGAT+CGG | + | chr7.1:27004529-27004548 | MS.gene023795:CDS | 50.0% | |
| TTCTGTCGCAGAACCTGACA+CGG | - | chr7.1:27004476-27004495 | None:intergenic | 50.0% | |
| TTGTATCGGAAGGCGGTGTT+AGG | + | chr7.1:27005127-27005146 | MS.gene023795:CDS | 50.0% | |
| ! | ACATGGTGGCGTTTGTCCTT+TGG | + | chr7.1:27004882-27004901 | MS.gene023795:CDS | 50.0% |
| AACCGGCGATTCTGTTTCGC+AGG | + | chr7.1:27004918-27004937 | MS.gene023795:CDS | 55.0% | |
| AATCGGGTAGCTGCGAGGAT+TGG | + | chr7.1:27004728-27004747 | MS.gene023795:CDS | 55.0% | |
| AGCCTGCGAAACAGAATCGC+CGG | - | chr7.1:27004923-27004942 | None:intergenic | 55.0% | |
| ATCCTCGCAGCTACCCGATT+CGG | - | chr7.1:27004728-27004747 | None:intergenic | 55.0% | |
| CAGAACTGGTATGCTTGGCG+AGG | + | chr7.1:27004426-27004445 | MS.gene023795:CDS | 55.0% | |
| CAGGAGCAACATTGCTGCAC+TGG | + | chr7.1:27004636-27004655 | MS.gene023795:CDS | 55.0% | |
| CGTGAAATCGTCGGACATGG+TGG | + | chr7.1:27004868-27004887 | MS.gene023795:CDS | 55.0% | |
| GCGTTGTCGAAGTCGCTTGA+AGG | + | chr7.1:27004280-27004299 | MS.gene023795:CDS | 55.0% | |
| GCTGCGACTGCAGATTCTTG+AGG | - | chr7.1:27005183-27005202 | None:intergenic | 55.0% | |
| TCGCGTGAAATCGTCGGACA+TGG | + | chr7.1:27004865-27004884 | MS.gene023795:CDS | 55.0% | |
| ! | AGCGGCATTTTGTGCTCCTG+GGG | - | chr7.1:27005295-27005314 | None:intergenic | 55.0% |
| ! | ATTTTGTGCTCCTGGGGAGC+CGG | - | chr7.1:27005289-27005308 | None:intergenic | 55.0% |
| ! | CAGCGGCATTTTGTGCTCCT+GGG | - | chr7.1:27005296-27005315 | None:intergenic | 55.0% |
| GTGTTGAAATCCGGCTCCCC+AGG | + | chr7.1:27005276-27005295 | MS.gene023795:CDS | 60.0% | |
| TCGGCAGATTGCTGACGCAG+CGG | - | chr7.1:27005313-27005332 | None:intergenic | 60.0% | |
| ! | GCAGCGGCATTTTGTGCTCC+TGG | - | chr7.1:27005297-27005316 | None:intergenic | 60.0% |
| AGCCGAATCGGGTAGCTGCG+AGG | + | chr7.1:27004723-27004742 | MS.gene023795:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 27004055 | 27005737 | 27004055 | ID=MS.gene023795 |
| chr7.1 | mRNA | 27004055 | 27005737 | 27004055 | ID=MS.gene023795.t1;Parent=MS.gene023795 |
| chr7.1 | exon | 27004055 | 27005737 | 27004055 | ID=MS.gene023795.t1.exon1;Parent=MS.gene023795.t1 |
| chr7.1 | CDS | 27004055 | 27005737 | 27004055 | ID=cds.MS.gene023795.t1;Parent=MS.gene023795.t1 |
| Gene Sequence |
| Protein sequence |
