Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024463.t1 | XP_003626547.1 | 98.3 | 174 | 3 | 0 | 1 | 174 | 1 | 174 | 6.20E-95 | 356.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024463.t1 | Q8LGI8 | 92.0 | 174 | 14 | 0 | 1 | 174 | 1 | 174 | 3.2e-92 | 339.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024463.t1 | G7L415 | 98.3 | 174 | 3 | 0 | 1 | 174 | 1 | 174 | 4.5e-95 | 356.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene024463.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63427 | MS.gene024463 | PPI |
| MS.gene024463 | MS.gene51964 | PPI |
| MS.gene95934 | MS.gene024463 | PPI |
| MS.gene51687 | MS.gene024463 | PPI |
| MS.gene009509 | MS.gene024463 | PPI |
| MS.gene024463 | MS.gene019081 | PPI |
| MS.gene92650 | MS.gene024463 | PPI |
| MS.gene51967 | MS.gene024463 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024463.t1 | MTR_7g117040 | 98.276 | 174 | 3 | 0 | 1 | 174 | 1 | 174 | 6.53e-130 | 361 |
| MS.gene024463.t1 | MTR_7g117040 | 95.977 | 174 | 3 | 1 | 1 | 174 | 1 | 170 | 1.81e-124 | 347 |
| MS.gene024463.t1 | MTR_7g117040 | 93.678 | 174 | 4 | 1 | 1 | 174 | 1 | 167 | 5.86e-121 | 338 |
| MS.gene024463.t1 | MTR_3g034200 | 35.762 | 151 | 96 | 1 | 1 | 150 | 1 | 151 | 6.23e-28 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024463.t1 | AT1G03150 | 91.954 | 174 | 14 | 0 | 1 | 174 | 1 | 174 | 1.92e-123 | 345 |
| MS.gene024463.t1 | AT5G13780 | 36.424 | 151 | 95 | 1 | 1 | 150 | 1 | 151 | 2.30e-27 | 102 |
Find 44 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGATTCATTAGTTTCT+TGG | 0.211108 | 7.2:-1108668 | None:intergenic |
| CGAGTGCTACGCTATTATTC+TGG | 0.267608 | 7.2:+1110513 | MS.gene024463:CDS |
| TGATATGGTTACCGGGGCCT+TGG | 0.305955 | 7.2:-1108467 | None:intergenic |
| CACAAATAGATCAACAAAAT+AGG | 0.329063 | 7.2:-1108799 | None:intergenic |
| ACTTACTGTAACCCATGATA+TGG | 0.371450 | 7.2:-1108482 | None:intergenic |
| GTAACCCATGATATGGTTAC+CGG | 0.405860 | 7.2:-1108475 | None:intergenic |
| TTCTGGGGAAGAAGATGGAT+TGG | 0.420903 | 7.2:+1110530 | MS.gene024463:CDS |
| GATATGGTTACCGGGGCCTT+GGG | 0.427052 | 7.2:-1108466 | None:intergenic |
| GGTTACCGGGGCCTTGGGCG+AGG | 0.434572 | 7.2:-1108461 | None:intergenic |
| TAGTCGTACTCTAACTCATC+AGG | 0.466585 | 7.2:-1110721 | None:intergenic |
| TAATAGTTGCCTGCGATACT+CGG | 0.470505 | 7.2:-1108644 | None:intergenic |
| GAGTGCTACGCTATTATTCT+GGG | 0.472245 | 7.2:+1110514 | MS.gene024463:CDS |
| TTGGGCGAGGTGGAAATAGT+CGG | 0.473599 | 7.2:-1108448 | None:intergenic |
| TCTGGGGAAGAAGATGGATT+GGG | 0.475034 | 7.2:+1110531 | MS.gene024463:CDS |
| AGCCATCAAAATGTATGAAA+AGG | 0.478370 | 7.2:+1108839 | MS.gene024463:CDS |
| GTAGTTATGGGTAAAGTTGA+GGG | 0.481119 | 7.2:+1108574 | MS.gene024463:intron |
| AGGCCCCGGTAACCATATCA+TGG | 0.483412 | 7.2:+1108470 | MS.gene024463:CDS |
| TTCCACCTCGCCCAAGGCCC+CGG | 0.488885 | 7.2:+1108456 | MS.gene024463:CDS |
| TATTATTCTGGGGAAGAAGA+TGG | 0.493124 | 7.2:+1110525 | MS.gene024463:CDS |
| GACTATTTCCACCTCGCCCA+AGG | 0.493150 | 7.2:+1108450 | MS.gene024463:CDS |
| GGAGTGACAGGTCGTTTAAG+AGG | 0.494138 | 7.2:-1110700 | None:intergenic |
| TTGAGGGGCAAGGAGAATCT+TGG | 0.494281 | 7.2:+1108590 | MS.gene024463:CDS |
| TGCTAGGTAGGTCATGTAGA+AGG | 0.496038 | 7.2:-1108418 | None:intergenic |
| TGACATTTGTAAAACGAAGA+AGG | 0.498914 | 7.2:-1108290 | None:intergenic |
| TGGGCGAGGTGGAAATAGTC+GGG | 0.499600 | 7.2:-1108447 | None:intergenic |
| TGTAGTTATGGGTAAAGTTG+AGG | 0.505774 | 7.2:+1108573 | MS.gene024463:intron |
| TACCGGGGCCTTGGGCGAGG+TGG | 0.518879 | 7.2:-1108458 | None:intergenic |
| CTGTTGCTCCCGAGTATCGC+AGG | 0.521448 | 7.2:+1108635 | MS.gene024463:CDS |
| TACATACAGTTTCAGTGAGA+TGG | 0.523499 | 7.2:-1108320 | None:intergenic |
| AATAGTCGGGCCATCGTGCT+AGG | 0.528873 | 7.2:-1108434 | None:intergenic |
| ATGGGTAAAGTTGAGGGGCA+AGG | 0.534565 | 7.2:+1108580 | MS.gene024463:CDS |
| TCTAACTCATCAGGAGTGAC+AGG | 0.539202 | 7.2:-1110712 | None:intergenic |
| AATAGTTGCCTGCGATACTC+GGG | 0.557157 | 7.2:-1108643 | None:intergenic |
| TAACCCATGATATGGTTACC+GGG | 0.568371 | 7.2:-1108474 | None:intergenic |
| GAGTGACAGGTCGTTTAAGA+GGG | 0.595531 | 7.2:-1110699 | None:intergenic |
| GGCCCCGGTAACCATATCAT+GGG | 0.604498 | 7.2:+1108471 | MS.gene024463:CDS |
| AGGTCGTTTAAGAGGGATGA+CGG | 0.617126 | 7.2:-1110692 | None:intergenic |
| TAGTTATGGGTAAAGTTGAG+GGG | 0.650869 | 7.2:+1108575 | MS.gene024463:intron |
| GGGCAAGGAGAATCTTGGCA+TGG | 0.658826 | 7.2:+1108595 | MS.gene024463:CDS |
| GTCGGGCCATCGTGCTAGGT+AGG | 0.658913 | 7.2:-1108430 | None:intergenic |
| TGAAGATGACAACAATACGT+AGG | 0.673340 | 7.2:+1108253 | None:intergenic |
| AACCCATGATATGGTTACCG+GGG | 0.702997 | 7.2:-1108473 | None:intergenic |
| AGTGCTACGCTATTATTCTG+GGG | 0.705031 | 7.2:+1110515 | MS.gene024463:CDS |
| ACATGACCTACCTAGCACGA+TGG | 0.757874 | 7.2:+1108424 | MS.gene024463:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAACTTTATAAGTTAAAA+CGG | - | chr7.2:1110081-1110100 | None:intergenic | 15.0% |
| !! | TTAACTTATAAAGTTGTAAT+TGG | + | chr7.2:1110083-1110102 | MS.gene024463:intron | 15.0% |
| !!! | CATTTTTAATCTTTTAGAAT+TGG | + | chr7.2:1108734-1108753 | MS.gene024463:intron | 15.0% |
| !! | AAATCAAACCTATGTTTAAT+AGG | - | chr7.2:1109939-1109958 | None:intergenic | 20.0% |
| !! | AGCTAAAAAGTGAAATAAAT+TGG | - | chr7.2:1109361-1109380 | None:intergenic | 20.0% |
| !! | ATGAAGTAAAAACAAAAACA+TGG | - | chr7.2:1110564-1110583 | None:intergenic | 20.0% |
| !! | CATTAATGTAATGTAGTTAT+GGG | + | chr7.2:1108562-1108581 | MS.gene024463:intron | 20.0% |
| !! | GCTAAAAAGTGAAATAAATT+GGG | - | chr7.2:1109360-1109379 | None:intergenic | 20.0% |
| !! | TCATTAATGTAATGTAGTTA+TGG | + | chr7.2:1108561-1108580 | MS.gene024463:intron | 20.0% |
| !! | TTCTCATATCTGAAAATAAA+GGG | - | chr7.2:1110642-1110661 | None:intergenic | 20.0% |
| !! | TTTCTCATATCTGAAAATAA+AGG | - | chr7.2:1110643-1110662 | None:intergenic | 20.0% |
| !!! | AAAACAAAATTTTCAGATTG+TGG | + | chr7.2:1110180-1110199 | MS.gene024463:intron | 20.0% |
| !!! | TATGTTTTCTTCATTAGATT+AGG | + | chr7.2:1110411-1110430 | MS.gene024463:intron | 20.0% |
| !!! | TTTATTTTCAGATATGAGAA+AGG | + | chr7.2:1110642-1110661 | MS.gene024463:intron | 20.0% |
| !!! | TTTCATATTCAGATTTTGTT+AGG | - | chr7.2:1109840-1109859 | None:intergenic | 20.0% |
| !!! | TTTTAATCTTTTAGAATTGG+AGG | + | chr7.2:1108737-1108756 | MS.gene024463:intron | 20.0% |
| ! | AAAGAATTAGTTAGCAATTC+AGG | - | chr7.2:1110454-1110473 | None:intergenic | 25.0% |
| ! | AAATGAAAGAAAGATATGCA+AGG | - | chr7.2:1108719-1108738 | None:intergenic | 25.0% |
| ! | ACATGTTGAAAAATCATAAG+TGG | + | chr7.2:1109171-1109190 | MS.gene024463:intron | 25.0% |
| ! | ACTTTACAAATAGCATCAAA+TGG | + | chr7.2:1109886-1109905 | MS.gene024463:intron | 25.0% |
| ! | AGAAACATAATATGGAAAAG+AGG | - | chr7.2:1109591-1109610 | None:intergenic | 25.0% |
| ! | ATATAATCGAGAGAGAAAAA+AGG | - | chr7.2:1108522-1108541 | None:intergenic | 25.0% |
| ! | CACAAATAGATCAACAAAAT+AGG | - | chr7.2:1108802-1108821 | None:intergenic | 25.0% |
| ! | CAGTACATAGAAACATAATA+TGG | - | chr7.2:1109599-1109618 | None:intergenic | 25.0% |
| ! | GAAACATAATATGGAAAAGA+GGG | - | chr7.2:1109590-1109609 | None:intergenic | 25.0% |
| ! | GTCTTGATATAAGTTAGAAT+TGG | + | chr7.2:1108759-1108778 | MS.gene024463:intron | 25.0% |
| ! | GTTGTATAATGTACACAAAA+TGG | - | chr7.2:1109396-1109415 | None:intergenic | 25.0% |
| ! | TATAATCGAGAGAGAAAAAA+GGG | - | chr7.2:1108521-1108540 | None:intergenic | 25.0% |
| ! | TATTATTATCCAACTGATGT+GGG | - | chr7.2:1110230-1110249 | None:intergenic | 25.0% |
| ! | TGTAAATTGAATGTTGGATT+AGG | + | chr7.2:1110387-1110406 | MS.gene024463:intron | 25.0% |
| ! | TGTCATTGTAAATTGAATGT+TGG | + | chr7.2:1110381-1110400 | MS.gene024463:intron | 25.0% |
| ! | TTGAAAATAGAGTTCTTTCA+TGG | - | chr7.2:1109140-1109159 | None:intergenic | 25.0% |
| !! | AAATATTGTCTCAATGGATT+GGG | + | chr7.2:1110032-1110051 | MS.gene024463:intron | 25.0% |
| !! | ATTTTCAGATTGTGGTTTTT+TGG | + | chr7.2:1110188-1110207 | MS.gene024463:intron | 25.0% |
| !! | TAATGAGAAGTTAGATTTTG+TGG | - | chr7.2:1109211-1109230 | None:intergenic | 25.0% |
| !! | TACCTTTTCATACATTTTGA+TGG | - | chr7.2:1108844-1108863 | None:intergenic | 25.0% |
| !! | TATAAAGTTGTAATTGGTTC+AGG | + | chr7.2:1110089-1110108 | MS.gene024463:intron | 25.0% |
| !!! | ATTGTAAAAGCACTAATAAG+AGG | - | chr7.2:1109537-1109556 | None:intergenic | 25.0% |
| !!! | TTGTAAAAGCACTAATAAGA+GGG | - | chr7.2:1109536-1109555 | None:intergenic | 25.0% |
| AAAATAGAGTTCTTTCATGG+TGG | - | chr7.2:1109137-1109156 | None:intergenic | 30.0% | |
| ACAAACAACATTAAGAACGA+AGG | - | chr7.2:1108383-1108402 | None:intergenic | 30.0% | |
| ACATACAGAATCATCAAGTA+GGG | + | chr7.2:1108915-1108934 | MS.gene024463:intron | 30.0% | |
| AGCCATCAAAATGTATGAAA+AGG | + | chr7.2:1108839-1108858 | MS.gene024463:CDS | 30.0% | |
| ATAATCGAGAGAGAAAAAAG+GGG | - | chr7.2:1108520-1108539 | None:intergenic | 30.0% | |
| ATGCCTTCTGTTTAAAAACT+TGG | + | chr7.2:1109321-1109340 | MS.gene024463:intron | 30.0% | |
| CACTTAATGACTTTCTCAAT+GGG | - | chr7.2:1109453-1109472 | None:intergenic | 30.0% | |
| GAAATATTGTCTCAATGGAT+TGG | + | chr7.2:1110031-1110050 | MS.gene024463:intron | 30.0% | |
| GAGATGAAATATTGTCTCAA+TGG | + | chr7.2:1110026-1110045 | MS.gene024463:intron | 30.0% | |
| GTATTATTATCCAACTGATG+TGG | - | chr7.2:1110231-1110250 | None:intergenic | 30.0% | |
| TAAGAATTAGCATGAAGATG+AGG | - | chr7.2:1108946-1108965 | None:intergenic | 30.0% | |
| TACCAGTTAGAGAAGAAAAA+AGG | + | chr7.2:1108981-1109000 | MS.gene024463:intron | 30.0% | |
| TGACATTTGTAAAACGAAGA+AGG | - | chr7.2:1108293-1108312 | None:intergenic | 30.0% | |
| TGCCTTCTGTTTAAAAACTT+GGG | + | chr7.2:1109322-1109341 | MS.gene024463:intron | 30.0% | |
| TGTTATCTAAAAAACACCGT+AGG | - | chr7.2:1109499-1109518 | None:intergenic | 30.0% | |
| TTCTGTTTAAAAACTTGGGT+AGG | + | chr7.2:1109326-1109345 | MS.gene024463:intron | 30.0% | |
| ! | AAGTCTGTGTCACTATTTAT+TGG | + | chr7.2:1110604-1110623 | MS.gene024463:intron | 30.0% |
| ! | GAGAAGATTCATTAGTTTCT+TGG | - | chr7.2:1108671-1108690 | None:intergenic | 30.0% |
| ! | GCTTTGAACCTATTAAACAT+AGG | + | chr7.2:1109928-1109947 | MS.gene024463:intron | 30.0% |
| ! | TACCCAAGTTTTTAAACAGA+AGG | - | chr7.2:1109327-1109346 | None:intergenic | 30.0% |
| ! | TGAGATATGAATGAAAGCAT+TGG | - | chr7.2:1109631-1109650 | None:intergenic | 30.0% |
| ! | TGCTATTTAAGCTTACTTTC+TGG | + | chr7.2:1109695-1109714 | MS.gene024463:intron | 30.0% |
| !! | AATACCATTGAGTTGAGAAA+CGG | - | chr7.2:1108350-1108369 | None:intergenic | 30.0% |
| !! | AGATATGAATGAAAGCATTG+GGG | - | chr7.2:1109629-1109648 | None:intergenic | 30.0% |
| !! | GAGATATGAATGAAAGCATT+GGG | - | chr7.2:1109630-1109649 | None:intergenic | 30.0% |
| !! | GATTTTTCAACATGTTAGCT+TGG | - | chr7.2:1109166-1109185 | None:intergenic | 30.0% |
| !! | TTTTCATACATTTTGATGGC+TGG | - | chr7.2:1108840-1108859 | None:intergenic | 30.0% |
| !!! | ACTTTTTAGCTTATTTCTGC+TGG | + | chr7.2:1109370-1109389 | MS.gene024463:intron | 30.0% |
| !!! | TACCTTTTTTCTTCTCTAAC+TGG | - | chr7.2:1108986-1109005 | None:intergenic | 30.0% |
| ACTTACTGTAACCCATGATA+TGG | - | chr7.2:1108485-1108504 | None:intergenic | 35.0% | |
| AGCACTAATAAGAGGGTAAA+AGG | - | chr7.2:1109529-1109548 | None:intergenic | 35.0% | |
| ATACAGAATCATCAAGTAGG+GGG | + | chr7.2:1108917-1108936 | MS.gene024463:intron | 35.0% | |
| ATGACTTTCTCAATGGGATA+AGG | - | chr7.2:1109447-1109466 | None:intergenic | 35.0% | |
| CATACAGAATCATCAAGTAG+GGG | + | chr7.2:1108916-1108935 | MS.gene024463:intron | 35.0% | |
| CATTTCAGATTCTGTCAGAA+AGG | + | chr7.2:1108880-1108899 | MS.gene024463:intron | 35.0% | |
| GACATACAGAATCATCAAGT+AGG | + | chr7.2:1108914-1108933 | MS.gene024463:intron | 35.0% | |
| GCACTTAATGACTTTCTCAA+TGG | - | chr7.2:1109454-1109473 | None:intergenic | 35.0% | |
| GTAGTTATGGGTAAAGTTGA+GGG | + | chr7.2:1108574-1108593 | MS.gene024463:intron | 35.0% | |
| TAATCGAGAGAGAAAAAAGG+GGG | - | chr7.2:1108519-1108538 | None:intergenic | 35.0% | |
| TACATACAGTTTCAGTGAGA+TGG | - | chr7.2:1108323-1108342 | None:intergenic | 35.0% | |
| TAGTTATGGGTAAAGTTGAG+GGG | + | chr7.2:1108575-1108594 | MS.gene024463:intron | 35.0% | |
| TCCTATTTGACATCTTAGCT+TGG | + | chr7.2:1110474-1110493 | MS.gene024463:intron | 35.0% | |
| TGAGAGGAATCTCAATCAAA+CGG | + | chr7.2:1109058-1109077 | MS.gene024463:intron | 35.0% | |
| TGTAGTTATGGGTAAAGTTG+AGG | + | chr7.2:1108573-1108592 | MS.gene024463:intron | 35.0% | |
| ! | TATTATTCTGGGGAAGAAGA+TGG | + | chr7.2:1110525-1110544 | MS.gene024463:CDS | 35.0% |
| ! | TGGTCTGATTTTGCAAACAA+CGG | + | chr7.2:1110155-1110174 | MS.gene024463:intron | 35.0% |
| ! | TGTAATTGGTTCAGGTGATT+TGG | + | chr7.2:1110097-1110116 | MS.gene024463:intron | 35.0% |
| !! | CTTCACTTTTCACAAGAAGT+CGG | + | chr7.2:1109976-1109995 | MS.gene024463:intron | 35.0% |
| ACTACCGTTTCTCAACTCAA+TGG | + | chr7.2:1108343-1108362 | MS.gene024463:intron | 40.0% | |
| AGTGCTACGCTATTATTCTG+GGG | + | chr7.2:1110515-1110534 | MS.gene024463:CDS | 40.0% | |
| ATAGAGTTCTTTCATGGTGG+AGG | - | chr7.2:1109134-1109153 | None:intergenic | 40.0% | |
| CGACTTCTTGTGAAAAGTGA+AGG | - | chr7.2:1109978-1109997 | None:intergenic | 40.0% | |
| CTAAAAAACACCGTAGGACA+AGG | - | chr7.2:1109493-1109512 | None:intergenic | 40.0% | |
| CTTAGTCAGATAAGGCTTGA+TGG | + | chr7.2:1109786-1109805 | MS.gene024463:intron | 40.0% | |
| GAGAGGAATCTCAATCAAAC+GGG | + | chr7.2:1109059-1109078 | MS.gene024463:intron | 40.0% | |
| GAGTGCTACGCTATTATTCT+GGG | + | chr7.2:1110514-1110533 | MS.gene024463:CDS | 40.0% | |
| GCCAAGCTAAGATGTCAAAT+AGG | - | chr7.2:1110478-1110497 | None:intergenic | 40.0% | |
| GGTTGTAGTGTTCTACTTCA+TGG | + | chr7.2:1109080-1109099 | MS.gene024463:intron | 40.0% | |
| GTAACCCATGATATGGTTAC+CGG | - | chr7.2:1108478-1108497 | None:intergenic | 40.0% | |
| GTTATCTCGATTGCATTGAG+AGG | + | chr7.2:1109042-1109061 | MS.gene024463:intron | 40.0% | |
| TAACCCATGATATGGTTACC+GGG | - | chr7.2:1108477-1108496 | None:intergenic | 40.0% | |
| TAATAGTTGCCTGCGATACT+CGG | - | chr7.2:1108647-1108666 | None:intergenic | 40.0% | |
| TAGTCGTACTCTAACTCATC+AGG | - | chr7.2:1110724-1110743 | None:intergenic | 40.0% | |
| TTACTTTGTCCCACATCAGT+TGG | + | chr7.2:1110218-1110237 | MS.gene024463:intron | 40.0% | |
| TTTCTCAATGGGATAAGGCT+TGG | - | chr7.2:1109442-1109461 | None:intergenic | 40.0% | |
| ! | AAGCCTTATCTGACTAAGTG+GGG | - | chr7.2:1109784-1109803 | None:intergenic | 40.0% |
| ! | ACAAACAAAGCCTTGTCCTA+CGG | + | chr7.2:1109480-1109499 | MS.gene024463:intron | 40.0% |
| ! | CAAGCCTTATCTGACTAAGT+GGG | - | chr7.2:1109785-1109804 | None:intergenic | 40.0% |
| ! | TAGAGTTCTTTCATGGTGGA+GGG | - | chr7.2:1109133-1109152 | None:intergenic | 40.0% |
| ! | TCAAGCCTTATCTGACTAAG+TGG | - | chr7.2:1109786-1109805 | None:intergenic | 40.0% |
| !! | AATGAAAGCATTGGGGACAT+AGG | - | chr7.2:1109622-1109641 | None:intergenic | 40.0% |
| AACCCATGATATGGTTACCG+GGG | - | chr7.2:1108476-1108495 | None:intergenic | 45.0% | |
| AATAGTTGCCTGCGATACTC+GGG | - | chr7.2:1108646-1108665 | None:intergenic | 45.0% | |
| AGGTCGTTTAAGAGGGATGA+CGG | - | chr7.2:1110695-1110714 | None:intergenic | 45.0% | |
| CGAGTGCTACGCTATTATTC+TGG | + | chr7.2:1110513-1110532 | MS.gene024463:CDS | 45.0% | |
| GAGTGACAGGTCGTTTAAGA+GGG | - | chr7.2:1110702-1110721 | None:intergenic | 45.0% | |
| TCTAACTCATCAGGAGTGAC+AGG | - | chr7.2:1110715-1110734 | None:intergenic | 45.0% | |
| TGCTAGGTAGGTCATGTAGA+AGG | - | chr7.2:1108421-1108440 | None:intergenic | 45.0% | |
| ! | CGTAATCTGGAATTGCAAGC+TGG | + | chr7.2:1110130-1110149 | MS.gene024463:intron | 45.0% |
| ! | TCTGGAATTGCAAGCTGGTT+TGG | + | chr7.2:1110135-1110154 | MS.gene024463:intron | 45.0% |
| ! | TCTGGGGAAGAAGATGGATT+GGG | + | chr7.2:1110531-1110550 | MS.gene024463:CDS | 45.0% |
| ! | TGGCTAGTTCATGCGTAATC+TGG | + | chr7.2:1110117-1110136 | MS.gene024463:intron | 45.0% |
| ! | TTCTGGGGAAGAAGATGGAT+TGG | + | chr7.2:1110530-1110549 | MS.gene024463:CDS | 45.0% |
| !! | GGAAGAAGATGGATTGGGTA+TGG | + | chr7.2:1110536-1110555 | MS.gene024463:intron | 45.0% |
| !! | GTAGGACAAGGCTTTGTTTG+TGG | - | chr7.2:1109481-1109500 | None:intergenic | 45.0% |
| !! | ATAATAATACAATTAAATTA+AGG | + | chr7.2:1110241-1110260 | MS.gene024463:intron | 5.0% |
| !! | TAATAATACAATTAAATTAA+GGG | + | chr7.2:1110242-1110261 | MS.gene024463:intron | 5.0% |
| !! | TAATAATACAATTAAATTAA+GGG | - | chr7.2:1110261-1110242 | None:intergenic | 5.0% |
| !! | TAATTGTATTATTAAATTAA+GGG | + | chr7.2:1110314-1110333 | MS.gene024463:intron | 5.0% |
| !! | TTAATAATACAATTAAATTA+AGG | - | chr7.2:1110309-1110328 | None:intergenic | 5.0% |
| !! | TTAATTGTATTATTAAATTA+AGG | + | chr7.2:1110313-1110332 | MS.gene024463:intron | 5.0% |
| ACATGACCTACCTAGCACGA+TGG | + | chr7.2:1108424-1108443 | MS.gene024463:CDS | 50.0% | |
| AGAGGGCAGAGTCTCAACTT+AGG | - | chr7.2:1109573-1109592 | None:intergenic | 50.0% | |
| ATGGGTAAAGTTGAGGGGCA+AGG | + | chr7.2:1108580-1108599 | MS.gene024463:CDS | 50.0% | |
| CGACCCCACTTAGTCAGATA+AGG | + | chr7.2:1109778-1109797 | MS.gene024463:intron | 50.0% | |
| GAGGGTAACATCACAGGGAA+CGG | - | chr7.2:1109115-1109134 | None:intergenic | 50.0% | |
| GCAGCTACCATACTCCAAGA+TGG | - | chr7.2:1109267-1109286 | None:intergenic | 50.0% | |
| GCTACCATACTCCAAGATGG+TGG | - | chr7.2:1109264-1109283 | None:intergenic | 50.0% | |
| GGAGTGACAGGTCGTTTAAG+AGG | - | chr7.2:1110703-1110722 | None:intergenic | 50.0% | |
| TGGTGGAGGGTAACATCACA+GGG | - | chr7.2:1109120-1109139 | None:intergenic | 50.0% | |
| TTGAGGGGCAAGGAGAATCT+TGG | + | chr7.2:1108590-1108609 | MS.gene024463:CDS | 50.0% | |
| TTGGGCGAGGTGGAAATAGT+CGG | - | chr7.2:1108451-1108470 | None:intergenic | 50.0% | |
| ! | ACCATACTCCAAGATGGTGG+TGG | - | chr7.2:1109261-1109280 | None:intergenic | 50.0% |
| ! | ATGGTGGAGGGTAACATCAC+AGG | - | chr7.2:1109121-1109140 | None:intergenic | 50.0% |
| AATAGTCGGGCCATCGTGCT+AGG | - | chr7.2:1108437-1108456 | None:intergenic | 55.0% | |
| AGGCCCCGGTAACCATATCA+TGG | + | chr7.2:1108470-1108489 | MS.gene024463:CDS | 55.0% | |
| GACTATTTCCACCTCGCCCA+AGG | + | chr7.2:1108450-1108469 | MS.gene024463:CDS | 55.0% | |
| GAGAACTGCCACCACCATCT+TGG | + | chr7.2:1109250-1109269 | MS.gene024463:intron | 55.0% | |
| GATATGGTTACCGGGGCCTT+GGG | - | chr7.2:1108469-1108488 | None:intergenic | 55.0% | |
| GCCACCACCATCTTGGAGTA+TGG | + | chr7.2:1109257-1109276 | MS.gene024463:intron | 55.0% | |
| GGCCCCGGTAACCATATCAT+GGG | + | chr7.2:1108471-1108490 | MS.gene024463:CDS | 55.0% | |
| GGGCAAGGAGAATCTTGGCA+TGG | + | chr7.2:1108595-1108614 | MS.gene024463:CDS | 55.0% | |
| TGATATGGTTACCGGGGCCT+TGG | - | chr7.2:1108470-1108489 | None:intergenic | 55.0% | |
| TGGGCGAGGTGGAAATAGTC+GGG | - | chr7.2:1108450-1108469 | None:intergenic | 55.0% | |
| ! | CTGTTGCTCCCGAGTATCGC+AGG | + | chr7.2:1108635-1108654 | MS.gene024463:CDS | 60.0% |
| GTCGGGCCATCGTGCTAGGT+AGG | - | chr7.2:1108433-1108452 | None:intergenic | 65.0% | |
| TTCCACCTCGCCCAAGGCCC+CGG | + | chr7.2:1108456-1108475 | MS.gene024463:CDS | 70.0% | |
| GGTTACCGGGGCCTTGGGCG+AGG | - | chr7.2:1108464-1108483 | None:intergenic | 75.0% | |
| TACCGGGGCCTTGGGCGAGG+TGG | - | chr7.2:1108461-1108480 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 1108258 | 1110744 | 1108258 | ID=MS.gene024463 |
| chr7.2 | mRNA | 1108258 | 1110744 | 1108258 | ID=MS.gene024463.t1;Parent=MS.gene024463 |
| chr7.2 | exon | 1108258 | 1108335 | 1108258 | ID=MS.gene024463.t1.exon1;Parent=MS.gene024463.t1 |
| chr7.2 | CDS | 1108258 | 1108335 | 1108258 | ID=cds.MS.gene024463.t1;Parent=MS.gene024463.t1 |
| chr7.2 | exon | 1108408 | 1108498 | 1108408 | ID=MS.gene024463.t1.exon2;Parent=MS.gene024463.t1 |
| chr7.2 | CDS | 1108408 | 1108498 | 1108408 | ID=cds.MS.gene024463.t1;Parent=MS.gene024463.t1 |
| chr7.2 | exon | 1108578 | 1108710 | 1108578 | ID=MS.gene024463.t1.exon3;Parent=MS.gene024463.t1 |
| chr7.2 | CDS | 1108578 | 1108710 | 1108578 | ID=cds.MS.gene024463.t1;Parent=MS.gene024463.t1 |
| chr7.2 | exon | 1108791 | 1108860 | 1108791 | ID=MS.gene024463.t1.exon4;Parent=MS.gene024463.t1 |
| chr7.2 | CDS | 1108791 | 1108860 | 1108791 | ID=cds.MS.gene024463.t1;Parent=MS.gene024463.t1 |
| chr7.2 | exon | 1110492 | 1110552 | 1110492 | ID=MS.gene024463.t1.exon5;Parent=MS.gene024463.t1 |
| chr7.2 | CDS | 1110492 | 1110552 | 1110492 | ID=cds.MS.gene024463.t1;Parent=MS.gene024463.t1 |
| chr7.2 | exon | 1110653 | 1110744 | 1110653 | ID=MS.gene024463.t1.exon6;Parent=MS.gene024463.t1 |
| chr7.2 | CDS | 1110653 | 1110744 | 1110653 | ID=cds.MS.gene024463.t1;Parent=MS.gene024463.t1 |
| Gene Sequence |
| Protein sequence |
