Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02508.t1 | XP_013461353.1 | 95.8 | 260 | 11 | 0 | 1 | 260 | 1 | 260 | 2.00E-137 | 498.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02508.t1 | Q54GN8 | 72.7 | 260 | 71 | 0 | 1 | 260 | 1 | 260 | 2.0e-106 | 386.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02508.t1 | I3STA8 | 95.8 | 260 | 11 | 0 | 1 | 260 | 1 | 260 | 1.4e-137 | 498.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051451 | MS.gene02508 | PPI |
| MS.gene07704 | MS.gene02508 | PPI |
| MS.gene02508 | MS.gene07405 | PPI |
| MS.gene062254 | MS.gene02508 | PPI |
| MS.gene44230 | MS.gene02508 | PPI |
| MS.gene67460 | MS.gene02508 | PPI |
| MS.gene02508 | MS.gene004882 | PPI |
| MS.gene02508 | MS.gene85577 | PPI |
| MS.gene02508 | MS.gene64789 | PPI |
| MS.gene89672 | MS.gene02508 | PPI |
| MS.gene02508 | MS.gene012127 | PPI |
| MS.gene02508 | MS.gene064459 | PPI |
| MS.gene017622 | MS.gene02508 | PPI |
| MS.gene68079 | MS.gene02508 | PPI |
| MS.gene02508 | MS.gene59485 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02508.t1 | MTR_3g088865 | 95.769 | 260 | 11 | 0 | 1 | 260 | 1 | 260 | 0.0 | 503 |
| MS.gene02508.t1 | MTR_0508s0010 | 91.154 | 260 | 23 | 0 | 1 | 260 | 1 | 260 | 1.41e-179 | 494 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02508.t1 | AT5G06360 | 85.769 | 260 | 37 | 0 | 1 | 260 | 1 | 260 | 1.83e-170 | 471 |
Find 73 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCAGTCCCTTGGTATTA+AGG | 0.194482 | 3.2:-75981006 | MS.gene02508:intron |
| AGCTGTTCCTGCATATCTTT+TGG | 0.216509 | 3.2:-75980333 | MS.gene02508:CDS |
| ACATTCAATCTAGAAATTAT+TGG | 0.300648 | 3.2:-75979063 | MS.gene02508:CDS |
| GAAGGAGAAGGCTGGGAAAT+GGG | 0.301706 | 3.2:-75980161 | MS.gene02508:CDS |
| GGAAGGAGAAGGCTGGGAAA+TGG | 0.307698 | 3.2:-75980162 | MS.gene02508:CDS |
| TTCCAGTCCCTTGGTATTAA+GGG | 0.318986 | 3.2:-75981005 | MS.gene02508:intron |
| CAGGTAAATGTTAGCGAACT+TGG | 0.326690 | 3.2:-75978820 | MS.gene02508:CDS |
| TTTCTGGGTTGTTGGTAACC+TGG | 0.337046 | 3.2:+75978664 | None:intergenic |
| TTGAATGTGCATTTAAGTTC+AGG | 0.355975 | 3.2:+75979078 | None:intergenic |
| CGAATGAACCGCTCATACTT+TGG | 0.362723 | 3.2:+75979141 | None:intergenic |
| AGGTGTACATAGGGCCATTA+GGG | 0.368687 | 3.2:+75979028 | None:intergenic |
| GAGGTGTACATAGGGCCATT+AGG | 0.373392 | 3.2:+75979027 | None:intergenic |
| CCTCTCTTGGTGTCATTACC+AGG | 0.375954 | 3.2:-75979008 | MS.gene02508:CDS |
| AACCATCCTCTTCCATTGCT+TGG | 0.381373 | 3.2:+75979206 | None:intergenic |
| CAAGGCTGATGATAATGTTC+AGG | 0.418037 | 3.2:-75980360 | MS.gene02508:CDS |
| AAATGTTAGCGAACTTGGTT+TGG | 0.420710 | 3.2:-75978815 | MS.gene02508:CDS |
| TTCTGGGTTGTTGGTAACCT+GGG | 0.421246 | 3.2:+75978665 | None:intergenic |
| GAGCGGTTCATTCGCCCTAC+TGG | 0.430434 | 3.2:-75979132 | MS.gene02508:CDS |
| AGCTCACAAGCACTCTAAAC+AGG | 0.437905 | 3.2:-75981119 | MS.gene02508:CDS |
| TGGATCACGAAGATAAAATT+CGG | 0.447870 | 3.2:-75981159 | MS.gene02508:CDS |
| TTACCAAAGCTACGTTTGTT+GGG | 0.448001 | 3.2:-75979185 | MS.gene02508:CDS |
| GGCCCTATGTACACCTCTCT+TGG | 0.470350 | 3.2:-75979021 | MS.gene02508:CDS |
| AAAGCTACGTTTGTTGGGCC+TGG | 0.474081 | 3.2:-75979180 | MS.gene02508:CDS |
| CTTGGTTTGGTTACACCGGC+AGG | 0.474888 | 3.2:-75978802 | MS.gene02508:CDS |
| CTAGCCGCAAAATGAGCATA+TGG | 0.475469 | 3.2:-75981212 | MS.gene02508:intron |
| AGGCCCAACAAACGTAGCTT+TGG | 0.479383 | 3.2:+75979182 | None:intergenic |
| GTTACCAAAGCTACGTTTGT+TGG | 0.484389 | 3.2:-75979186 | MS.gene02508:CDS |
| TCATTCGCCCTACTGGATTG+AGG | 0.491508 | 3.2:-75979125 | MS.gene02508:CDS |
| ATGAACCGCTCATACTTTGG+AGG | 0.495101 | 3.2:+75979144 | None:intergenic |
| AACATTTCATCTTCAGCCAC+AGG | 0.498226 | 3.2:+75979681 | None:intergenic |
| GCAACACCATTAAGCAAAAG+AGG | 0.504420 | 3.2:-75980183 | MS.gene02508:CDS |
| AAAAGAGGAAGGAGAAGGCT+GGG | 0.512948 | 3.2:-75980168 | MS.gene02508:CDS |
| TACCTCAATTATAGATCCCC+TGG | 0.514336 | 3.2:+75978990 | None:intergenic |
| GCACTCTAAACAGGCCCAGC+AGG | 0.517478 | 3.2:-75981110 | MS.gene02508:intron |
| CCCCACACAACTTTCCCTGC+CGG | 0.519424 | 3.2:+75978787 | None:intergenic |
| CAAAAGAGGAAGGAGAAGGC+TGG | 0.524008 | 3.2:-75980169 | MS.gene02508:CDS |
| CGCAATCTCACCTTAGGTAG+AGG | 0.525741 | 3.2:+75980133 | None:intergenic |
| TCACGATCCAAAAGATATGC+AGG | 0.530672 | 3.2:+75980326 | None:intergenic |
| CACCGGCAGGGAAAGTTGTG+TGG | 0.551474 | 3.2:-75978789 | MS.gene02508:CDS |
| TTGCAGCCAAGCAATGGAAG+AGG | 0.553612 | 3.2:-75979212 | MS.gene02508:intron |
| CACCAAGAGAGGTGTACATA+GGG | 0.554572 | 3.2:+75979019 | None:intergenic |
| ATGGGATGTTCCTCTACCTA+AGG | 0.559228 | 3.2:-75980143 | MS.gene02508:intron |
| ACACCAAGAGAGGTGTACAT+AGG | 0.561851 | 3.2:+75979018 | None:intergenic |
| ACCAACAACCCAGAAAATGA+TGG | 0.563594 | 3.2:-75978657 | MS.gene02508:CDS |
| ACCGGCAGGGAAAGTTGTGT+GGG | 0.567026 | 3.2:-75978788 | MS.gene02508:CDS |
| TGATTTGAATTAAACCTGCT+GGG | 0.569811 | 3.2:+75981096 | None:intergenic |
| AGATAAAATTCGGAAGAAAG+AGG | 0.570810 | 3.2:-75981149 | MS.gene02508:CDS |
| TTAGTGAACCTCAATCCAGT+AGG | 0.577477 | 3.2:+75979117 | None:intergenic |
| ATGTTCAAAGTGGTCCGCAC+CGG | 0.580559 | 3.2:-75979663 | MS.gene02508:CDS |
| GGCTGATGATAATGTTCAGG+AGG | 0.580998 | 3.2:-75980357 | MS.gene02508:CDS |
| TACCAGGGGATCTATAATTG+AGG | 0.588901 | 3.2:-75978992 | MS.gene02508:intron |
| TGAGAACACAACACGAGCAA+AGG | 0.595295 | 3.2:-75980306 | MS.gene02508:intron |
| CTCTCTTGGTGTCATTACCA+GGG | 0.600053 | 3.2:-75979007 | MS.gene02508:CDS |
| CACCATTAAGCAAAAGAGGA+AGG | 0.600141 | 3.2:-75980179 | MS.gene02508:CDS |
| CGAACTTGGTTTGGTTACAC+CGG | 0.600179 | 3.2:-75978806 | MS.gene02508:CDS |
| GAATGCAGGTAAATATGCCC+AGG | 0.602897 | 3.2:-75978682 | MS.gene02508:intron |
| ATTTCCTTAGGTACGTCCTG+TGG | 0.610316 | 3.2:-75979697 | MS.gene02508:intron |
| AGATGTTGACTCATCATGCA+TGG | 0.617671 | 3.2:+75980388 | None:intergenic |
| TGCATGATGAGTCAACATCT+AGG | 0.617897 | 3.2:-75980385 | MS.gene02508:CDS |
| TCTCTTGGTGTCATTACCAG+GGG | 0.619690 | 3.2:-75979006 | MS.gene02508:CDS |
| TAAGCAAAAGAGGAAGGAGA+AGG | 0.630601 | 3.2:-75980173 | MS.gene02508:CDS |
| TCATCTTACCCTTAATACCA+AGG | 0.634675 | 3.2:+75980997 | None:intergenic |
| TAGTGAACCTCAATCCAGTA+GGG | 0.635011 | 3.2:+75979118 | None:intergenic |
| TTGGTTTGGTTACACCGGCA+GGG | 0.636596 | 3.2:-75978801 | MS.gene02508:CDS |
| CATCTTACCCTTAATACCAA+GGG | 0.636802 | 3.2:+75980998 | None:intergenic |
| TGAGTCAACATCTAGGCGCA+AGG | 0.649808 | 3.2:-75980378 | MS.gene02508:CDS |
| AGCCAAGCAATGGAAGAGGA+TGG | 0.659521 | 3.2:-75979208 | MS.gene02508:CDS |
| CCTGGTAATGACACCAAGAG+AGG | 0.664047 | 3.2:+75979008 | None:intergenic |
| GCTGATGATAATGTTCAGGA+GGG | 0.669436 | 3.2:-75980356 | MS.gene02508:CDS |
| GAAAACCTCCAAAGTATGAG+CGG | 0.683082 | 3.2:-75979149 | MS.gene02508:CDS |
| TATCTTCGTGATCCAAACGG+CGG | 0.702807 | 3.2:+75981167 | None:intergenic |
| TGAAGATGAAATGTTCAAAG+TGG | 0.707953 | 3.2:-75979673 | MS.gene02508:CDS |
| CCGGCAGGGAAAGTTGTGTG+GGG | 0.732167 | 3.2:-75978787 | MS.gene02508:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAATTTATCAAATGA+TGG | - | chr3.2:75980592-75980611 | MS.gene02508:intron | 10.0% |
| !!! | ATTTTAATTTATCAAATGAT+GGG | - | chr3.2:75980593-75980612 | MS.gene02508:intron | 10.0% |
| !! | AAATTATAAGAGAAACTATT+AGG | - | chr3.2:75979256-75979275 | MS.gene02508:intron | 15.0% |
| !! | GAAAAAAATTAAAGTTGTAT+TGG | + | chr3.2:75980037-75980056 | None:intergenic | 15.0% |
| !!! | ATATTTTCATAAATCTAACT+GGG | - | chr3.2:75978919-75978938 | MS.gene02508:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr3.2:75979997-75980016 | None:intergenic | 15.0% |
| !!! | TATATTTTCATAAATCTAAC+TGG | - | chr3.2:75978918-75978937 | MS.gene02508:intron | 15.0% |
| !! | AAACAAAGAAAAACATAAAC+AGG | + | chr3.2:75978676-75978695 | None:intergenic | 20.0% |
| !! | ACATTCAATCTAGAAATTAT+TGG | - | chr3.2:75980895-75980914 | MS.gene02508:intron | 20.0% |
| !! | ATTTCTTGTTCTTATAATTG+AGG | - | chr3.2:75980996-75981015 | MS.gene02508:CDS | 20.0% |
| !! | TTTCTTGTTCTTATAATTGA+GGG | - | chr3.2:75980997-75981016 | MS.gene02508:CDS | 20.0% |
| !!! | AATCAAGCACAAATTTTTAT+TGG | + | chr3.2:75979132-75979151 | None:intergenic | 20.0% |
| !!! | ATATTTTCTCAGTTCTTTAA+AGG | - | chr3.2:75980510-75980529 | MS.gene02508:intron | 20.0% |
| !!! | GTCTTTTTCTTATAAAGTAA+GGG | - | chr3.2:75980116-75980135 | MS.gene02508:intron | 20.0% |
| !!! | GTTTCTCTTATAATTTTTCA+AGG | + | chr3.2:75979252-75979271 | None:intergenic | 20.0% |
| !!! | TATTTTTGTGACTTGTATTT+TGG | - | chr3.2:75981199-75981218 | MS.gene02508:CDS | 20.0% |
| !!! | TGTCTTTTTCTTATAAAGTA+AGG | - | chr3.2:75980115-75980134 | MS.gene02508:intron | 20.0% |
| ! | AAACTTACAAGAATATGCAA+GGG | + | chr3.2:75979721-75979740 | None:intergenic | 25.0% |
| ! | ATAAGAGAAACTATTAGGAA+AGG | - | chr3.2:75979261-75979280 | MS.gene02508:intron | 25.0% |
| ! | ATGATCATTTCCTTTCTAAA+GGG | + | chr3.2:75979898-75979917 | None:intergenic | 25.0% |
| ! | GTTGTTGTATTTCTTCAATA+TGG | - | chr3.2:75979435-75979454 | MS.gene02508:intron | 25.0% |
| ! | TAAACTTACAAGAATATGCA+AGG | + | chr3.2:75979722-75979741 | None:intergenic | 25.0% |
| ! | TATATCCATAAACAATAGGA+GGG | + | chr3.2:75980478-75980497 | None:intergenic | 25.0% |
| ! | TATTAGGAAAGGTTTATGAT+AGG | - | chr3.2:75979272-75979291 | MS.gene02508:intron | 25.0% |
| ! | TGTGCTTGATTTCTTAAATA+TGG | - | chr3.2:75979141-75979160 | MS.gene02508:CDS | 25.0% |
| ! | TTCTTGTTCTTATAATTGAG+GGG | - | chr3.2:75980998-75981017 | MS.gene02508:CDS | 25.0% |
| ! | TTTAGAAAGGAAATGATCAT+CGG | - | chr3.2:75979898-75979917 | MS.gene02508:intron | 25.0% |
| !! | ATACTTACTCTTTCTTTTAC+CGG | + | chr3.2:75980317-75980336 | None:intergenic | 25.0% |
| !! | TAATACATCCATCATTTTCT+GGG | + | chr3.2:75981312-75981331 | None:intergenic | 25.0% |
| !! | TCTTAAATATGGTGGAAAAT+AGG | - | chr3.2:75979152-75979171 | MS.gene02508:CDS | 25.0% |
| !! | TTAATACATCCATCATTTTC+TGG | + | chr3.2:75981313-75981332 | None:intergenic | 25.0% |
| !! | TTGTTATTATCACAACTTGT+TGG | - | chr3.2:75981091-75981110 | MS.gene02508:intron | 25.0% |
| !!! | TTTTTCGGCATAATTTTTCT+TGG | + | chr3.2:75978990-75979009 | None:intergenic | 25.0% |
| AAACAGAATCAGAAAAAGCA+TGG | + | chr3.2:75978705-75978724 | None:intergenic | 30.0% | |
| AAATTGTGTGAGAGAAAAGT+TGG | + | chr3.2:75980077-75980096 | None:intergenic | 30.0% | |
| AGATAAAATTCGGAAGAAAG+AGG | - | chr3.2:75978809-75978828 | MS.gene02508:CDS | 30.0% | |
| AGGTTTATGATAGGTCATTA+TGG | - | chr3.2:75979281-75979300 | MS.gene02508:intron | 30.0% | |
| AGTATCACATTTATTGCTTC+TGG | - | chr3.2:75980332-75980351 | MS.gene02508:CDS | 30.0% | |
| CTATATCCATAAACAATAGG+AGG | + | chr3.2:75980479-75980498 | None:intergenic | 30.0% | |
| CTGAGAAAATATAGATTTCC+TGG | + | chr3.2:75980502-75980521 | None:intergenic | 30.0% | |
| GATGATCATTTCCTTTCTAA+AGG | + | chr3.2:75979899-75979918 | None:intergenic | 30.0% | |
| GCTTGATTTCTTAAATATGG+TGG | - | chr3.2:75979144-75979163 | MS.gene02508:CDS | 30.0% | |
| GTGTTAGATAATGATTAGCA+CGG | - | chr3.2:75979490-75979509 | MS.gene02508:intron | 30.0% | |
| TATGTTCATTAAAGAGTTGC+TGG | - | chr3.2:75979464-75979483 | MS.gene02508:intron | 30.0% | |
| TATTGTTTATGGATATAGCC+AGG | - | chr3.2:75980481-75980500 | MS.gene02508:intron | 30.0% | |
| TGAAGATGAAATGTTCAAAG+TGG | - | chr3.2:75980285-75980304 | MS.gene02508:intron | 30.0% | |
| TGATTTGAATTAAACCTGCT+GGG | + | chr3.2:75978865-75978884 | None:intergenic | 30.0% | |
| TGGATCACGAAGATAAAATT+CGG | - | chr3.2:75978799-75978818 | MS.gene02508:CDS | 30.0% | |
| TGGCTATATCCATAAACAAT+AGG | + | chr3.2:75980482-75980501 | None:intergenic | 30.0% | |
| TGTTATCATGCAGAATTGAA+AGG | - | chr3.2:75979677-75979696 | MS.gene02508:CDS | 30.0% | |
| TTTAGGTGATATTGATGCAT+TGG | - | chr3.2:75981238-75981257 | MS.gene02508:intron | 30.0% | |
| ! | AACAGAATCAGAAAAAGCAT+GGG | + | chr3.2:75978704-75978723 | None:intergenic | 30.0% |
| ! | AGAACGTATCAGTATTGAAA+AGG | + | chr3.2:75981071-75981090 | None:intergenic | 30.0% |
| ! | ATCAGTATTGAAAAGGTCAA+AGG | + | chr3.2:75981064-75981083 | None:intergenic | 30.0% |
| ! | GAGGGAGTATAACTTTAAAA+AGG | + | chr3.2:75979949-75979968 | None:intergenic | 30.0% |
| ! | TCAGTATTGAAAAGGTCAAA+GGG | + | chr3.2:75981063-75981082 | None:intergenic | 30.0% |
| ! | TTGAATGTGCATTTAAGTTC+AGG | + | chr3.2:75980883-75980902 | None:intergenic | 30.0% |
| ! | TTTTATCTTCGTGATCCAAA+CGG | + | chr3.2:75978797-75978816 | None:intergenic | 30.0% |
| !! | ATCAAATGATGGGTTTGTAA+GGG | - | chr3.2:75980603-75980622 | MS.gene02508:intron | 30.0% |
| !! | TATCAAATGATGGGTTTGTA+AGG | - | chr3.2:75980602-75980621 | MS.gene02508:intron | 30.0% |
| !!! | ATCTTGTTTTGTCAACAGTT+TGG | - | chr3.2:75979547-75979566 | MS.gene02508:intron | 30.0% |
| !!! | GACACTTATTTTGAAACAGA+GGG | - | chr3.2:75980211-75980230 | MS.gene02508:intron | 30.0% |
| !!! | TGCTTTTTTTCCCTTTAGAA+AGG | - | chr3.2:75979885-75979904 | MS.gene02508:intron | 30.0% |
| AAATGTTAGCGAACTTGGTT+TGG | - | chr3.2:75981143-75981162 | MS.gene02508:CDS | 35.0% | |
| AATACTATGAGATCTGCTTC+TGG | + | chr3.2:75980714-75980733 | None:intergenic | 35.0% | |
| AATTTCCGTGACTTAAGAGT+TGG | + | chr3.2:75980576-75980595 | None:intergenic | 35.0% | |
| AGGGAAAAAAAGCAGCATAA+TGG | + | chr3.2:75979879-75979898 | None:intergenic | 35.0% | |
| AGTAAGGAGAGTAAATCAGA+TGG | - | chr3.2:75979219-75979238 | MS.gene02508:intron | 35.0% | |
| AGTTCCTTGTTAGCATGTTA+CGG | - | chr3.2:75980655-75980674 | MS.gene02508:intron | 35.0% | |
| ATGCTATTGCACACAGATTA+AGG | + | chr3.2:75980186-75980205 | None:intergenic | 35.0% | |
| ATTGCACACAGATTAAGGAA+TGG | + | chr3.2:75980181-75980200 | None:intergenic | 35.0% | |
| CATCTTACCCTTAATACCAA+GGG | + | chr3.2:75978963-75978982 | None:intergenic | 35.0% | |
| CGTAATTTGATTCATGTAGC+CGG | - | chr3.2:75979304-75979323 | MS.gene02508:intron | 35.0% | |
| CTTAACGCATTTCAATCATG+TGG | + | chr3.2:75980397-75980416 | None:intergenic | 35.0% | |
| GAAGCAGATCTCATAGTATT+TGG | - | chr3.2:75980714-75980733 | MS.gene02508:intron | 35.0% | |
| GACGTGTATAATCTGTAGTA+AGG | - | chr3.2:75979203-75979222 | MS.gene02508:CDS | 35.0% | |
| GGAGTAATTAACTGTATGTG+TGG | - | chr3.2:75980232-75980251 | MS.gene02508:intron | 35.0% | |
| GGGAAAAAAAGCAGCATAAT+GGG | + | chr3.2:75979878-75979897 | None:intergenic | 35.0% | |
| GTGATTTGAATTAAACCTGC+TGG | + | chr3.2:75978866-75978885 | None:intergenic | 35.0% | |
| TACCTGAAATTACAGTAAGC+AGG | + | chr3.2:75981124-75981143 | None:intergenic | 35.0% | |
| TAGATAATGATTAGCACGGT+AGG | - | chr3.2:75979494-75979513 | MS.gene02508:intron | 35.0% | |
| TCATCTTACCCTTAATACCA+AGG | + | chr3.2:75978964-75978983 | None:intergenic | 35.0% | |
| TGCTTCTGGTATTATGATCT+TGG | - | chr3.2:75980346-75980365 | MS.gene02508:CDS | 35.0% | |
| TTACCAAAGCTACGTTTGTT+GGG | - | chr3.2:75980773-75980792 | MS.gene02508:intron | 35.0% | |
| TTCATTAAAGAGTTGCTGGT+TGG | - | chr3.2:75979468-75979487 | MS.gene02508:intron | 35.0% | |
| TTCCTGCTTACTGTAATTTC+AGG | - | chr3.2:75981119-75981138 | MS.gene02508:CDS | 35.0% | |
| ! | ACTTTTGCACTCGCAATTTA+AGG | - | chr3.2:75981023-75981042 | MS.gene02508:intron | 35.0% |
| ! | AGTATTGAAAAGGTCAAAGG+GGG | + | chr3.2:75981061-75981080 | None:intergenic | 35.0% |
| ! | ATATGGTGGAAAATAGGCTT+AGG | - | chr3.2:75979158-75979177 | MS.gene02508:CDS | 35.0% |
| ! | CAGTATTGAAAAGGTCAAAG+GGG | + | chr3.2:75981062-75981081 | None:intergenic | 35.0% |
| ! | GTTGTCATGGCTGAAATTTT+AGG | - | chr3.2:75981221-75981240 | MS.gene02508:intron | 35.0% |
| ! | TGAGCTGCTTGAATTTTTGT+GGG | - | chr3.2:75980534-75980553 | MS.gene02508:intron | 35.0% |
| ! | TTGAGCTGCTTGAATTTTTG+TGG | - | chr3.2:75980533-75980552 | MS.gene02508:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr3.2:75979971-75979990 | None:intergenic | 35.0% |
| !! | ATCTTGGTGTCACATGTATT+AGG | - | chr3.2:75980362-75980381 | MS.gene02508:CDS | 35.0% |
| !! | TCTTGGTGTCACATGTATTA+GGG | - | chr3.2:75980363-75980382 | MS.gene02508:CDS | 35.0% |
| !! | TCTTTTTAATTCCAGTCCCT+TGG | - | chr3.2:75978944-75978963 | MS.gene02508:intron | 35.0% |
| !! | TTTTTGTTTGCCATGAATGC+AGG | - | chr3.2:75981262-75981281 | MS.gene02508:intron | 35.0% |
| !!! | CGACACTTATTTTGAAACAG+AGG | - | chr3.2:75980210-75980229 | MS.gene02508:intron | 35.0% |
| !!! | GACTTGTATTTTGGTTGTCA+TGG | - | chr3.2:75981208-75981227 | MS.gene02508:CDS | 35.0% |
| AAACGCCAACTCTTAAGTCA+CGG | - | chr3.2:75980568-75980587 | MS.gene02508:intron | 40.0% | |
| AAAGTTGGAGAGGGTAAAGT+TGG | + | chr3.2:75980062-75980081 | None:intergenic | 40.0% | |
| AACATTTCATCTTCAGCCAC+AGG | + | chr3.2:75980280-75980299 | None:intergenic | 40.0% | |
| AAGGAGAGTAAATCAGATGG+AGG | - | chr3.2:75979222-75979241 | MS.gene02508:intron | 40.0% | |
| ACCAACAACCCAGAAAATGA+TGG | - | chr3.2:75981301-75981320 | MS.gene02508:intron | 40.0% | |
| ATTCCAGTCCCTTGGTATTA+AGG | - | chr3.2:75978952-75978971 | MS.gene02508:intron | 40.0% | |
| ATTGAACGCAATCTCACCTT+AGG | + | chr3.2:75979834-75979853 | None:intergenic | 40.0% | |
| CACCATTAAGCAAAAGAGGA+AGG | - | chr3.2:75979779-75979798 | MS.gene02508:intron | 40.0% | |
| CAGGTAAATGTTAGCGAACT+TGG | - | chr3.2:75981138-75981157 | MS.gene02508:CDS | 40.0% | |
| GAAAACCTCCAAAGTATGAG+CGG | - | chr3.2:75980809-75980828 | MS.gene02508:intron | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | - | chr3.2:75979166-75979185 | MS.gene02508:CDS | 40.0% | |
| GAAAGGAAATGATCATCGGA+AGG | - | chr3.2:75979902-75979921 | MS.gene02508:intron | 40.0% | |
| GAGCGTCACCTTAAAAAGTA+TGG | - | chr3.2:75978768-75978787 | MS.gene02508:intron | 40.0% | |
| GCAACACCATTAAGCAAAAG+AGG | - | chr3.2:75979775-75979794 | MS.gene02508:intron | 40.0% | |
| GGAGTGAAGAAAAACCCTAA+TGG | - | chr3.2:75980916-75980935 | MS.gene02508:intron | 40.0% | |
| GGCATATTTACCTGCATTCA+TGG | + | chr3.2:75981275-75981294 | None:intergenic | 40.0% | |
| GTTACCAAAGCTACGTTTGT+TGG | - | chr3.2:75980772-75980791 | MS.gene02508:intron | 40.0% | |
| GTTCCTTGTTAGCATGTTAC+GGG | - | chr3.2:75980656-75980675 | MS.gene02508:intron | 40.0% | |
| TAAGCAAAAGAGGAAGGAGA+AGG | - | chr3.2:75979785-75979804 | MS.gene02508:intron | 40.0% | |
| TACCAGGGGATCTATAATTG+AGG | - | chr3.2:75980966-75980985 | MS.gene02508:CDS | 40.0% | |
| TACCTCAATTATAGATCCCC+TGG | + | chr3.2:75980971-75980990 | None:intergenic | 40.0% | |
| TAGTGAACCTCAATCCAGTA+GGG | + | chr3.2:75980843-75980862 | None:intergenic | 40.0% | |
| TCACGATCCAAAAGATATGC+AGG | + | chr3.2:75979635-75979654 | None:intergenic | 40.0% | |
| TGCATGATGAGTCAACATCT+AGG | - | chr3.2:75979573-75979592 | MS.gene02508:intron | 40.0% | |
| TGTCACATGTATTAGGGTCT+TGG | - | chr3.2:75980369-75980388 | MS.gene02508:CDS | 40.0% | |
| TGTGAGAGAAAAGTTGGAGA+GGG | + | chr3.2:75980071-75980090 | None:intergenic | 40.0% | |
| TTAGTGAACCTCAATCCAGT+AGG | + | chr3.2:75980844-75980863 | None:intergenic | 40.0% | |
| TTCCAGTCCCTTGGTATTAA+GGG | - | chr3.2:75978953-75978972 | MS.gene02508:intron | 40.0% | |
| TTCCTTGTTAGCATGTTACG+GGG | - | chr3.2:75980657-75980676 | MS.gene02508:intron | 40.0% | |
| TTGCTCCCTCCTATTGTTTA+TGG | - | chr3.2:75980470-75980489 | MS.gene02508:intron | 40.0% | |
| ! | AAAAGCCTTATCCCACTAAG+TGG | + | chr3.2:75979332-75979351 | None:intergenic | 40.0% |
| ! | AAAGCCTTATCCCACTAAGT+GGG | + | chr3.2:75979331-75979350 | None:intergenic | 40.0% |
| ! | ACTTAGTGGGATAAGGCTTT+TGG | - | chr3.2:75979331-75979350 | MS.gene02508:intron | 40.0% |
| ! | AGCTGTTCCTGCATATCTTT+TGG | - | chr3.2:75979625-75979644 | MS.gene02508:intron | 40.0% |
| ! | CAAGGCTGATGATAATGTTC+AGG | - | chr3.2:75979598-75979617 | MS.gene02508:intron | 40.0% |
| ! | CTCCTTCCTCTTTTGCTTAA+TGG | + | chr3.2:75979784-75979803 | None:intergenic | 40.0% |
| ! | GCTGATGATAATGTTCAGGA+GGG | - | chr3.2:75979602-75979621 | MS.gene02508:intron | 40.0% |
| ! | GTGTGGCTTTTCATTTCCTT+AGG | - | chr3.2:75980249-75980268 | MS.gene02508:intron | 40.0% |
| ! | TACTCTTTCTTTTACCGGTG+CGG | + | chr3.2:75980312-75980331 | None:intergenic | 40.0% |
| ! | TCCATCATTTTCTGGGTTGT+TGG | + | chr3.2:75981305-75981324 | None:intergenic | 40.0% |
| !! | AGATGTTGACTCATCATGCA+TGG | + | chr3.2:75979573-75979592 | None:intergenic | 40.0% |
| !! | CTCATACTTTGGAGGTTTTC+TGG | + | chr3.2:75980809-75980828 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr3.2:75979967-75979986 | None:intergenic | 40.0% |
| AAAAGAGGAAGGAGAAGGCT+GGG | - | chr3.2:75979790-75979809 | MS.gene02508:intron | 45.0% | |
| AACCATCCTCTTCCATTGCT+TGG | + | chr3.2:75980755-75980774 | None:intergenic | 45.0% | |
| AGCTCACAAGCACTCTAAAC+AGG | - | chr3.2:75978839-75978858 | MS.gene02508:intron | 45.0% | |
| AGGTGTACATAGGGCCATTA+GGG | + | chr3.2:75980933-75980952 | None:intergenic | 45.0% | |
| ATGAACCGCTCATACTTTGG+AGG | + | chr3.2:75980817-75980836 | None:intergenic | 45.0% | |
| ATGGGATGTTCCTCTACCTA+AGG | - | chr3.2:75979815-75979834 | MS.gene02508:intron | 45.0% | |
| ATTTCCTTAGGTACGTCCTG+TGG | - | chr3.2:75980261-75980280 | MS.gene02508:intron | 45.0% | |
| CGAATGAACCGCTCATACTT+TGG | + | chr3.2:75980820-75980839 | None:intergenic | 45.0% | |
| CTAGCCGCAAAATGAGCATA+TGG | - | chr3.2:75978746-75978765 | MS.gene02508:intron | 45.0% | |
| CTTATCCCAGTAAGTGAGGT+CGG | + | chr3.2:75979383-75979402 | None:intergenic | 45.0% | |
| GAATGCAGGTAAATATGCCC+AGG | - | chr3.2:75981276-75981295 | MS.gene02508:intron | 45.0% | |
| GTGTGAGAGAAAAGTTGGAG+AGG | + | chr3.2:75980072-75980091 | None:intergenic | 45.0% | |
| TACCCCGTAACATGCTAACA+AGG | + | chr3.2:75980662-75980681 | None:intergenic | 45.0% | |
| TACCCTTAATACCAAGGGAC+TGG | + | chr3.2:75978958-75978977 | None:intergenic | 45.0% | |
| TATCTTCGTGATCCAAACGG+CGG | + | chr3.2:75978794-75978813 | None:intergenic | 45.0% | |
| TCCATTGCTTGGCTGCAAAA+TGG | + | chr3.2:75980744-75980763 | None:intergenic | 45.0% | |
| TGAGAACACAACACGAGCAA+AGG | - | chr3.2:75979652-75979671 | MS.gene02508:CDS | 45.0% | |
| TGGTGGAAAATAGGCTTAGG+TGG | - | chr3.2:75979161-75979180 | MS.gene02508:CDS | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr3.2:75979330-75979349 | None:intergenic | 45.0% |
| ! | AAGCCTTATCCCAGTAAGTG+AGG | + | chr3.2:75979387-75979406 | None:intergenic | 45.0% |
| ! | ACACCAAGAGAGGTGTACAT+AGG | + | chr3.2:75980943-75980962 | None:intergenic | 45.0% |
| ! | ACCATTTTGCAGCCAAGCAA+TGG | - | chr3.2:75980740-75980759 | MS.gene02508:intron | 45.0% |
| ! | CACCAAGAGAGGTGTACATA+GGG | + | chr3.2:75980942-75980961 | None:intergenic | 45.0% |
| ! | CGCTCCATATGCTCATTTTG+CGG | + | chr3.2:75978753-75978772 | None:intergenic | 45.0% |
| ! | GCTGCTTGAATTTTTGTGGG+TGG | - | chr3.2:75980537-75980556 | MS.gene02508:intron | 45.0% |
| ! | GGCTGATGATAATGTTCAGG+AGG | - | chr3.2:75979601-75979620 | MS.gene02508:intron | 45.0% |
| ! | TAAAAAGTATGGCCGCCGTT+TGG | - | chr3.2:75978779-75978798 | MS.gene02508:intron | 45.0% |
| !! | AACGGCGGCCATACTTTTTA+AGG | + | chr3.2:75978779-75978798 | None:intergenic | 45.0% |
| !! | CCTCTTCATCTGCGCTTTTT+CGG | + | chr3.2:75979005-75979024 | None:intergenic | 45.0% |
| !! | CGAACTTGGTTTGGTTACAC+CGG | - | chr3.2:75981152-75981171 | MS.gene02508:CDS | 45.0% |
| !! | CTCTCTTGGTGTCATTACCA+GGG | - | chr3.2:75980951-75980970 | MS.gene02508:intron | 45.0% |
| !! | GGAGGTTTTCTGGTAAAACC+AGG | + | chr3.2:75980799-75980818 | None:intergenic | 45.0% |
| !! | TCTCTTGGTGTCATTACCAG+GGG | - | chr3.2:75980952-75980971 | MS.gene02508:intron | 45.0% |
| !! | TTCTGGGTTGTTGGTAACCT+GGG | + | chr3.2:75981296-75981315 | None:intergenic | 45.0% |
| !! | TTTCTGGGTTGTTGGTAACC+TGG | + | chr3.2:75981297-75981316 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr3.2:75979968-75979987 | None:intergenic | 45.0% |
| AGCCAAGCAATGGAAGAGGA+TGG | - | chr3.2:75980750-75980769 | MS.gene02508:intron | 50.0% | |
| AGGCCCAACAAACGTAGCTT+TGG | + | chr3.2:75980779-75980798 | None:intergenic | 50.0% | |
| ATGTAGCCGACCTCACTTAC+TGG | - | chr3.2:75979374-75979393 | MS.gene02508:intron | 50.0% | |
| ATGTTCAAAGTGGTCCGCAC+CGG | - | chr3.2:75980295-75980314 | MS.gene02508:intron | 50.0% | |
| CAAAAGAGGAAGGAGAAGGC+TGG | - | chr3.2:75979789-75979808 | MS.gene02508:intron | 50.0% | |
| CGACCTCACTTACTGGGATA+AGG | - | chr3.2:75979381-75979400 | MS.gene02508:intron | 50.0% | |
| CGCAATCTCACCTTAGGTAG+AGG | + | chr3.2:75979828-75979847 | None:intergenic | 50.0% | |
| GAAGGAGAAGGCTGGGAAAT+GGG | - | chr3.2:75979797-75979816 | MS.gene02508:intron | 50.0% | |
| GAGGTGTACATAGGGCCATT+AGG | + | chr3.2:75980934-75980953 | None:intergenic | 50.0% | |
| GGAAATGATCATCGGAAGGC+AGG | - | chr3.2:75979906-75979925 | MS.gene02508:intron | 50.0% | |
| TCATTCGCCCTACTGGATTG+AGG | - | chr3.2:75980833-75980852 | MS.gene02508:intron | 50.0% | |
| TGAGTCAACATCTAGGCGCA+AGG | - | chr3.2:75979580-75979599 | MS.gene02508:intron | 50.0% | |
| TGTAGCCGACCTCACTTACT+GGG | - | chr3.2:75979375-75979394 | MS.gene02508:intron | 50.0% | |
| TTGCAGCCAAGCAATGGAAG+AGG | - | chr3.2:75980746-75980765 | MS.gene02508:intron | 50.0% | |
| ! | AAAGCTACGTTTGTTGGGCC+TGG | - | chr3.2:75980778-75980797 | MS.gene02508:intron | 50.0% |
| ! | CCGAAAAAGCGCAGATGAAG+AGG | - | chr3.2:75979002-75979021 | MS.gene02508:CDS | 50.0% |
| ! | CCTGGTAATGACACCAAGAG+AGG | + | chr3.2:75980953-75980972 | None:intergenic | 50.0% |
| !! | CCTCTCTTGGTGTCATTACC+AGG | - | chr3.2:75980950-75980969 | MS.gene02508:intron | 50.0% |
| !! | TTGGTTTGGTTACACCGGCA+GGG | - | chr3.2:75981157-75981176 | MS.gene02508:CDS | 50.0% |
| ACCGGCAGGGAAAGTTGTGT+GGG | - | chr3.2:75981170-75981189 | MS.gene02508:CDS | 55.0% | |
| CTTATCCCACTAAGTGGGGC+CGG | + | chr3.2:75979326-75979345 | None:intergenic | 55.0% | |
| GATCATCGGAAGGCAGGAAG+TGG | - | chr3.2:75979912-75979931 | MS.gene02508:intron | 55.0% | |
| GGAAGGAGAAGGCTGGGAAA+TGG | - | chr3.2:75979796-75979815 | MS.gene02508:intron | 55.0% | |
| GGCCCTATGTACACCTCTCT+TGG | - | chr3.2:75980937-75980956 | MS.gene02508:intron | 55.0% | |
| TCAGCCACAGGACGTACCTA+AGG | + | chr3.2:75980268-75980287 | None:intergenic | 55.0% | |
| !! | CTTGGTTTGGTTACACCGGC+AGG | - | chr3.2:75981156-75981175 | MS.gene02508:CDS | 55.0% |
| ATGTAGCCGGCCCCACTTAG+TGG | - | chr3.2:75979317-75979336 | MS.gene02508:intron | 60.0% | |
| CACCGGCAGGGAAAGTTGTG+TGG | - | chr3.2:75981169-75981188 | MS.gene02508:CDS | 60.0% | |
| CCCCACACAACTTTCCCTGC+CGG | + | chr3.2:75981174-75981193 | None:intergenic | 60.0% | |
| CCGGCAGGGAAAGTTGTGTG+GGG | - | chr3.2:75981171-75981190 | MS.gene02508:CDS | 60.0% | |
| CGGCCCCACTTAGTGGGATA+AGG | - | chr3.2:75979324-75979343 | MS.gene02508:intron | 60.0% | |
| GAGCGGTTCATTCGCCCTAC+TGG | - | chr3.2:75980826-75980845 | MS.gene02508:intron | 60.0% | |
| GCACTCTAAACAGGCCCAGC+AGG | - | chr3.2:75978848-75978867 | MS.gene02508:intron | 60.0% | |
| TGTAGCCGGCCCCACTTAGT+GGG | - | chr3.2:75979318-75979337 | MS.gene02508:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 75978629 | 75981351 | 75978629 | ID=MS.gene02508 |
| chr3.2 | mRNA | 75978629 | 75981351 | 75978629 | ID=MS.gene02508.t1;Parent=MS.gene02508 |
| chr3.2 | exon | 75981349 | 75981351 | 75981349 | ID=MS.gene02508.t1.exon1;Parent=MS.gene02508.t1 |
| chr3.2 | CDS | 75981349 | 75981351 | 75981349 | ID=cds.MS.gene02508.t1;Parent=MS.gene02508.t1 |
| chr3.2 | exon | 75981111 | 75981230 | 75981111 | ID=MS.gene02508.t1.exon2;Parent=MS.gene02508.t1 |
| chr3.2 | CDS | 75981111 | 75981230 | 75981111 | ID=cds.MS.gene02508.t1;Parent=MS.gene02508.t1 |
| chr3.2 | exon | 75980954 | 75981021 | 75980954 | ID=MS.gene02508.t1.exon3;Parent=MS.gene02508.t1 |
| chr3.2 | CDS | 75980954 | 75981021 | 75980954 | ID=cds.MS.gene02508.t1;Parent=MS.gene02508.t1 |
| chr3.2 | exon | 75980307 | 75980415 | 75980307 | ID=MS.gene02508.t1.exon4;Parent=MS.gene02508.t1 |
| chr3.2 | CDS | 75980307 | 75980415 | 75980307 | ID=cds.MS.gene02508.t1;Parent=MS.gene02508.t1 |
| chr3.2 | exon | 75980144 | 75980212 | 75980144 | ID=MS.gene02508.t1.exon5;Parent=MS.gene02508.t1 |
| chr3.2 | CDS | 75980144 | 75980212 | 75980144 | ID=cds.MS.gene02508.t1;Parent=MS.gene02508.t1 |
| chr3.2 | exon | 75979652 | 75979709 | 75979652 | ID=MS.gene02508.t1.exon6;Parent=MS.gene02508.t1 |
| chr3.2 | CDS | 75979652 | 75979709 | 75979652 | ID=cds.MS.gene02508.t1;Parent=MS.gene02508.t1 |
| chr3.2 | exon | 75978993 | 75979228 | 75978993 | ID=MS.gene02508.t1.exon7;Parent=MS.gene02508.t1 |
| chr3.2 | CDS | 75978993 | 75979228 | 75978993 | ID=cds.MS.gene02508.t1;Parent=MS.gene02508.t1 |
| chr3.2 | exon | 75978788 | 75978839 | 75978788 | ID=MS.gene02508.t1.exon8;Parent=MS.gene02508.t1 |
| chr3.2 | CDS | 75978788 | 75978839 | 75978788 | ID=cds.MS.gene02508.t1;Parent=MS.gene02508.t1 |
| chr3.2 | exon | 75978629 | 75978696 | 75978629 | ID=MS.gene02508.t1.exon9;Parent=MS.gene02508.t1 |
| chr3.2 | CDS | 75978629 | 75978696 | 75978629 | ID=cds.MS.gene02508.t1;Parent=MS.gene02508.t1 |
| Gene Sequence |
| Protein sequence |
