Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41916.t1 | XP_013452171.1 | 99.6 | 239 | 1 | 0 | 73 | 311 | 71 | 309 | 8.70E-132 | 479.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41916.t1 | Q94AH9 | 90.3 | 238 | 23 | 0 | 73 | 310 | 80 | 317 | 1.7e-123 | 443.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41916.t1 | A0A072UK33 | 99.6 | 239 | 1 | 0 | 73 | 311 | 39 | 277 | 6.2e-132 | 479.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054186 | MS.gene41916 | 0.997835 | 3.34E-250 | -1.69E-46 |
MS.gene056257 | MS.gene41916 | 0.813707 | 2.23E-51 | -1.69E-46 |
MS.gene059422 | MS.gene41916 | 0.91123 | 7.70E-83 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41916.t1 | MTR_6g047580 | 99.035 | 311 | 1 | 1 | 1 | 311 | 1 | 309 | 0.0 | 606 |
MS.gene41916.t1 | MTR_6g047580 | 88.746 | 311 | 1 | 2 | 1 | 311 | 1 | 277 | 0.0 | 535 |
MS.gene41916.t1 | MTR_1g114000 | 97.143 | 245 | 7 | 0 | 67 | 311 | 69 | 313 | 1.87e-177 | 493 |
MS.gene41916.t1 | MTR_6g047580 | 98.425 | 254 | 2 | 1 | 1 | 254 | 1 | 252 | 1.13e-174 | 484 |
MS.gene41916.t1 | MTR_6g047580 | 88.506 | 261 | 26 | 2 | 1 | 261 | 1 | 257 | 2.29e-157 | 440 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41916.t1 | AT4G25630 | 90.574 | 244 | 23 | 0 | 67 | 310 | 74 | 317 | 7.22e-167 | 466 |
MS.gene41916.t1 | AT5G52470 | 90.909 | 242 | 22 | 0 | 67 | 308 | 63 | 304 | 5.83e-166 | 464 |
MS.gene41916.t1 | AT5G52490 | 62.745 | 306 | 100 | 1 | 1 | 306 | 1 | 292 | 4.15e-122 | 352 |
MS.gene41916.t1 | AT5G52470 | 93.902 | 164 | 10 | 0 | 67 | 230 | 63 | 226 | 5.61e-111 | 323 |
Find 0 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTTATCATATTTGATAT+GGG | - | 43357:12244-12263 | MS.gene41916:CDS | 10.0% |
!! | TTAATTTATCATATTTGATA+TGG | - | 43357:12243-12262 | MS.gene41916:CDS | 10.0% |
!!! | AGTTAATTGATTAAATTTTT+TGG | - | 43357:12579-12598 | MS.gene41916:intron | 10.0% |
!!! | TTATTTTGTCATAATTAATA+TGG | - | 43357:12541-12560 | MS.gene41916:intron | 10.0% |
!!! | TTTAATCAATTTATTTTGTA+TGG | - | 43357:16263-16282 | MS.gene41916:intron | 10.0% |
!! | AAGTCATATCAAATTAAATT+TGG | + | 43357:15178-15197 | None:intergenic | 15.0% |
!! | AATTAAATTGAAACAGAAAA+AGG | + | 43357:12179-12198 | None:intergenic | 15.0% |
!! | AGTAAAATTATAAAGAAAAG+AGG | + | 43357:16046-16065 | None:intergenic | 15.0% |
!! | ATTATGACAAAATAAACAAA+AGG | + | 43357:12536-12555 | None:intergenic | 15.0% |
!! | TAAATAATGAAAAATCTGAA+AGG | + | 43357:14854-14873 | None:intergenic | 15.0% |
!! | TTATGACAAAATAAACAAAA+GGG | + | 43357:12535-12554 | None:intergenic | 15.0% |
!! | TTCAAAATGTCAAATAAAAA+TGG | + | 43357:14821-14840 | None:intergenic | 15.0% |
!! | TTCATTTATTGAAATCAAAT+GGG | - | 43357:12635-12654 | MS.gene41916:intron | 15.0% |
!! | TTCATTTGTTTAAATCAAAT+GGG | - | 43357:12749-12768 | MS.gene41916:intron | 15.0% |
!! | TTTCATTTATTGAAATCAAA+TGG | - | 43357:12634-12653 | MS.gene41916:intron | 15.0% |
!! | TTTCATTTGTTTAAATCAAA+TGG | - | 43357:12748-12767 | MS.gene41916:intron | 15.0% |
!!! | CTTTTTAAATTTTAACTGAA+TGG | - | 43357:13405-13424 | MS.gene41916:intron | 15.0% |
!!! | TGATTAAATTTTTTGGATTT+TGG | - | 43357:12586-12605 | MS.gene41916:intron | 15.0% |
!!! | TTTTTAAGTTTGTTTTGTAT+TGG | - | 43357:16164-16183 | MS.gene41916:intron | 15.0% |
!! | AAATTGATATATAGACTATG+TGG | + | 43357:15631-15650 | None:intergenic | 20.0% |
!! | AATATGATAAATTAAACACG+AGG | + | 43357:12238-12257 | None:intergenic | 20.0% |
!! | ATATAACATATATAACGTTC+AGG | + | 43357:14434-14453 | None:intergenic | 20.0% |
!! | ATATGATAAATTAAACACGA+GGG | + | 43357:12237-12256 | None:intergenic | 20.0% |
!! | ATGGAAAACAAAAAAAAAAG+GGG | + | 43357:14621-14640 | None:intergenic | 20.0% |
!! | CAAAACAAACTTAAAAAACA+AGG | + | 43357:16161-16180 | None:intergenic | 20.0% |
!! | CATTCATTTCAAAGTATAAA+AGG | - | 43357:14641-14660 | MS.gene41916:intron | 20.0% |
!! | CCTTGATAGATATATAAAAA+TGG | + | 43357:15905-15924 | None:intergenic | 20.0% |
!! | GATGGAAAACAAAAAAAAAA+GGG | + | 43357:14622-14641 | None:intergenic | 20.0% |
!! | TGATGGAAAACAAAAAAAAA+AGG | + | 43357:14623-14642 | None:intergenic | 20.0% |
!! | TTAAATTCCTAAAAACTGAA+AGG | + | 43357:15267-15286 | None:intergenic | 20.0% |
!!! | AGATATATAGATTTTAAGCT+AGG | + | 43357:12883-12902 | None:intergenic | 20.0% |
!!! | ATCAATTTATTTTGTATGGT+AGG | - | 43357:16267-16286 | MS.gene41916:intron | 20.0% |
!!! | ATTTTTTCCTTTCAGTTTTT+AGG | - | 43357:15257-15276 | MS.gene41916:CDS | 20.0% |
!!! | CCATTTTTATATATCTATCA+AGG | - | 43357:15902-15921 | MS.gene41916:intron | 20.0% |
!!! | GTATTTAGGTTATATATTTC+CGG | - | 43357:15965-15984 | MS.gene41916:intron | 20.0% |
!!! | GTTTTCATTTTAGTTTTCAT+TGG | - | 43357:16197-16216 | MS.gene41916:intron | 20.0% |
!!! | TATTTAGGTTATATATTTCC+GGG | - | 43357:15966-15985 | MS.gene41916:intron | 20.0% |
!!! | TGTGATAATAAGAAGTATTT+GGG | + | 43357:15680-15699 | None:intergenic | 20.0% |
!!! | TTAGCTTTATTTGTTGAAAT+GGG | - | 43357:12341-12360 | MS.gene41916:intron | 20.0% |
!!! | TTATACTTTGAAATGAATGA+TGG | + | 43357:14640-14659 | None:intergenic | 20.0% |
!!! | TTATGACTTTTATCACAATA+AGG | - | 43357:15935-15954 | MS.gene41916:intron | 20.0% |
!!! | TTATTTGACATTTTGAAGTT+TGG | - | 43357:14824-14843 | MS.gene41916:intron | 20.0% |
!!! | TTCTATTTTATAAAGAAACC+TGG | - | 43357:14004-14023 | MS.gene41916:intron | 20.0% |
!!! | TTGTGATAATAAGAAGTATT+TGG | + | 43357:15681-15700 | None:intergenic | 20.0% |
!!! | TTTAGCTTTATTTGTTGAAA+TGG | - | 43357:12340-12359 | MS.gene41916:intron | 20.0% |
! | AACAAACTTAAAAAACAAGG+AGG | + | 43357:16158-16177 | None:intergenic | 25.0% |
! | AATAAGGCAAAGTTGTATTT+AGG | - | 43357:15951-15970 | MS.gene41916:intron | 25.0% |
! | ACTTCTTATTATCACAAAGT+TGG | - | 43357:15684-15703 | MS.gene41916:intron | 25.0% |
! | AGTTGATTGAATAGAAAGTT+TGG | - | 43357:12281-12300 | MS.gene41916:CDS | 25.0% |
! | ATTATTTGCATGGTTTGAAA+AGG | + | 43357:13654-13673 | None:intergenic | 25.0% |
! | CAAAAGTTGAGTATAGAATT+TGG | - | 43357:13844-13863 | MS.gene41916:intron | 25.0% |
! | GTAATGACACAATAAACTAA+CGG | + | 43357:13784-13803 | None:intergenic | 25.0% |
! | TATCATATTTGATATGGGTT+TGG | - | 43357:12249-12268 | MS.gene41916:CDS | 25.0% |
! | TGTTTCGTTATCTGTATATT+GGG | - | 43357:15207-15226 | MS.gene41916:intron | 25.0% |
! | TTGTTTCGTTATCTGTATAT+TGG | - | 43357:15206-15225 | MS.gene41916:intron | 25.0% |
!! | AGTTTTCATTGGATAGTAAA+TGG | - | 43357:16208-16227 | MS.gene41916:intron | 25.0% |
!! | ATTTTAAGCTAGGCTTTTAT+CGG | + | 43357:12873-12892 | None:intergenic | 25.0% |
!! | GATTGATTGATTGTTTTCTA+TGG | - | 43357:14879-14898 | MS.gene41916:intron | 25.0% |
!! | TCAAATGGGTTTATAGTAAT+AGG | - | 43357:12649-12668 | MS.gene41916:intron | 25.0% |
!!! | AAAAGAGGATATTTAGTTTG+TGG | + | 43357:16031-16050 | None:intergenic | 25.0% |
!!! | CACTGATTTATCTTAAATGA+TGG | - | 43357:14392-14411 | MS.gene41916:intron | 25.0% |
!!! | TCATTGATGATGTTTTTGTT+GGG | - | 43357:12611-12630 | MS.gene41916:intron | 25.0% |
!!! | TCATTTTGTTATATCCATCA+AGG | - | 43357:15140-15159 | MS.gene41916:intron | 25.0% |
!!! | TTCATTGATGATGTTTTTGT+TGG | - | 43357:12610-12629 | MS.gene41916:intron | 25.0% |
!!! | TTTTAGATTATTTCTCAGCT+TGG | + | 43357:16238-16257 | None:intergenic | 25.0% |
AAAATACCTTCATGTCTATG+GGG | + | 43357:13281-13300 | None:intergenic | 30.0% | |
AAACAAGGAGGTTAATTTAC+AGG | + | 43357:16146-16165 | None:intergenic | 30.0% | |
AAACTATCAATTTCACTTGG+TGG | + | 43357:16105-16124 | None:intergenic | 30.0% | |
AAACTGATACTTACACAACA+TGG | + | 43357:15044-15063 | None:intergenic | 30.0% | |
AAATTTGAATGAACCCTTAC+TGG | + | 43357:14097-14116 | None:intergenic | 30.0% | |
AAGGAAAAAATCAGAACACT+AGG | + | 43357:15248-15267 | None:intergenic | 30.0% | |
AGGAAAAAATCAGAACACTA+GGG | + | 43357:15247-15266 | None:intergenic | 30.0% | |
CTTATTATCACAAAGTTGGA+GGG | - | 43357:15688-15707 | MS.gene41916:intron | 30.0% | |
GAAAATACCTTCATGTCTAT+GGG | + | 43357:13282-13301 | None:intergenic | 30.0% | |
GAGAAACTATCAATTTCACT+TGG | + | 43357:16108-16127 | None:intergenic | 30.0% | |
GCTTCATATTATCTTAAAGC+CGG | - | 43357:15114-15133 | MS.gene41916:intron | 30.0% | |
GTGGAAAACAAATTTATGCA+TGG | + | 43357:15756-15775 | None:intergenic | 30.0% | |
GTTTATAGTAATAGGCTTGA+AGG | - | 43357:12657-12676 | MS.gene41916:intron | 30.0% | |
TAACCAAAACACTTGATACA+TGG | + | 43357:15318-15337 | None:intergenic | 30.0% | |
TAAGAGGACAGTTATATACT+TGG | + | 43357:14483-14502 | None:intergenic | 30.0% | |
TAATGTCATTCCCATTATTG+AGG | - | 43357:14273-14292 | MS.gene41916:CDS | 30.0% | |
TCACATCTCATTTGATCAAA+TGG | - | 43357:15801-15820 | MS.gene41916:intron | 30.0% | |
TCTTATTATCACAAAGTTGG+AGG | - | 43357:15687-15706 | MS.gene41916:intron | 30.0% | |
TGAAAATACCTTCATGTCTA+TGG | + | 43357:13283-13302 | None:intergenic | 30.0% | |
TGCAAAAACAAGTAGATAAG+AGG | + | 43357:14499-14518 | None:intergenic | 30.0% | |
TTACTTGTGCATTATAGACT+TGG | - | 43357:15879-15898 | MS.gene41916:intron | 30.0% | |
! | ATGATGGTACCAGAATATTT+TGG | - | 43357:14408-14427 | MS.gene41916:intron | 30.0% |
! | CAAATGGGTTTATAGTTAGT+GGG | - | 43357:12764-12783 | MS.gene41916:intron | 30.0% |
! | GATTAGACGTATTGATCTAA+TGG | + | 43357:15778-15797 | None:intergenic | 30.0% |
! | GCTCAAAGCAATAATTTGTA+GGG | - | 43357:12786-12805 | MS.gene41916:intron | 30.0% |
! | TCAAATGGGTTTATAGTTAG+TGG | - | 43357:12763-12782 | MS.gene41916:intron | 30.0% |
! | TGAAATGGGTTTAGAGTAAT+AGG | - | 43357:12355-12374 | MS.gene41916:intron | 30.0% |
! | TTTCCATGTATCAAGTGTTT+TGG | - | 43357:15312-15331 | MS.gene41916:CDS | 30.0% |
!! | AGCTTGATTTGTGTTGATAA+TGG | - | 43357:13024-13043 | MS.gene41916:intron | 30.0% |
!!! | CTTATCTACTTGTTTTTGCA+TGG | - | 43357:14499-14518 | MS.gene41916:intron | 30.0% |
!!! | GAAGGTATTTTCATTGCTAA+GGG | - | 43357:13290-13309 | MS.gene41916:intron | 30.0% |
!!! | TGAAGGTATTTTCATTGCTA+AGG | - | 43357:13289-13308 | MS.gene41916:intron | 30.0% |
AAATTGAGAGAATCCATTCC+CGG | + | 43357:15987-16006 | None:intergenic | 35.0% | |
AACACTAGGGAAAACTAAAC+AGG | + | 43357:15234-15253 | None:intergenic | 35.0% | |
AATGAACTGTGTAACGTTTG+AGG | - | 43357:12414-12433 | MS.gene41916:intron | 35.0% | |
ACTAACATTCTATACTTGGC+TGG | + | 43357:14310-14329 | None:intergenic | 35.0% | |
ACTGTCACCAAAATATGAGT+TGG | - | 43357:15010-15029 | MS.gene41916:intron | 35.0% | |
AGAGCACACAATTATTTGCA+TGG | + | 43357:13664-13683 | None:intergenic | 35.0% | |
AGGTTATATATTTCCGGGAA+TGG | - | 43357:15971-15990 | MS.gene41916:intron | 35.0% | |
AGTGCATATGATGAGTTACT+CGG | - | 43357:14683-14702 | MS.gene41916:CDS | 35.0% | |
ATCATCCAAGAAGTCTTGAA+GGG | + | 43357:15387-15406 | None:intergenic | 35.0% | |
ATGTCTAGCATCCTCAATAA+TGG | + | 43357:14287-14306 | None:intergenic | 35.0% | |
ATTATGCTAAACAACAGTGC+TGG | - | 43357:15469-15488 | MS.gene41916:CDS | 35.0% | |
CAGAATGCCTAAGAAGAAAA+AGG | - | 43357:16432-16451 | MS.gene41916:intron | 35.0% | |
CATAAAAGCCCAGCAAAAAT+TGG | + | 43357:12949-12968 | None:intergenic | 35.0% | |
CATATTCTGTGTATGTAGAC+TGG | - | 43357:14181-14200 | MS.gene41916:intron | 35.0% | |
GCCAACTAACATTCTATACT+TGG | + | 43357:14314-14333 | None:intergenic | 35.0% | |
GCCAAGTATAGAATGTTAGT+TGG | - | 43357:14310-14329 | MS.gene41916:CDS | 35.0% | |
GGATATAACAAAATGACCTC+CGG | + | 43357:15136-15155 | None:intergenic | 35.0% | |
GTATAGAATGTTAGTTGGCA+TGG | - | 43357:14315-14334 | MS.gene41916:CDS | 35.0% | |
GTCATTCAAGAAGTCTTGAA+GGG | + | 43357:14713-14732 | None:intergenic | 35.0% | |
GTTACTAAGAATCTTGTTCC+TGG | - | 43357:13329-13348 | MS.gene41916:intron | 35.0% | |
TCATATTATCTTAAAGCCGG+AGG | - | 43357:15117-15136 | MS.gene41916:intron | 35.0% | |
TCATTCAAGAAGTCTTGAAG+GGG | + | 43357:14712-14731 | None:intergenic | 35.0% | |
TGAAAAGAGAGTTTCTGTTC+AGG | - | 43357:13367-13386 | MS.gene41916:intron | 35.0% | |
TGATATTGTTGGTCCAGTAA+GGG | - | 43357:14081-14100 | MS.gene41916:intron | 35.0% | |
TGTCTAGCATCCTCAATAAT+GGG | + | 43357:14286-14305 | None:intergenic | 35.0% | |
TTTGATGTGCATCAGTATCT+CGG | + | 43357:15416-15435 | None:intergenic | 35.0% | |
! | AAAGTCTGCAAGTCTGTTTT+TGG | - | 43357:13721-13740 | MS.gene41916:intron | 35.0% |
! | AGCAATAATTTGTAGGGATC+CGG | - | 43357:12792-12811 | MS.gene41916:intron | 35.0% |
! | ATCCGAATCCAATTTTTGCT+GGG | - | 43357:12938-12957 | MS.gene41916:intron | 35.0% |
! | GACTTGCTTATTAAGCACTT+TGG | - | 43357:15501-15520 | MS.gene41916:CDS | 35.0% |
! | GGCTCAAAGCAATAATTTGT+AGG | - | 43357:12785-12804 | MS.gene41916:intron | 35.0% |
! | GTCTCATCCAACTCATATTT+TGG | + | 43357:15020-15039 | None:intergenic | 35.0% |
! | GTTTAGAGTAATAGGCTTGA+AGG | - | 43357:12363-12382 | MS.gene41916:intron | 35.0% |
! | TAGACGTATTGATCTAATGG+TGG | + | 43357:15775-15794 | None:intergenic | 35.0% |
! | TCAGCATCCTTTTTCTTCTT+AGG | + | 43357:16442-16461 | None:intergenic | 35.0% |
! | TGGAGTTTTTGAATATGTGC+AGG | - | 43357:13044-13063 | MS.gene41916:intron | 35.0% |
! | TTTTATGTGCATCAGCATCT+CGG | + | 43357:14742-14761 | None:intergenic | 35.0% |
! | TTTTGGACGTGTACAAACTT+TGG | - | 43357:13738-13757 | MS.gene41916:intron | 35.0% |
! | TTTTTACATTGTGCAGAGTG+AGG | - | 43357:13815-13834 | MS.gene41916:intron | 35.0% |
!!! | AAAGTTGGAGGGCATTTTTT+AGG | - | 43357:15699-15718 | MS.gene41916:intron | 35.0% |
!!! | CACAAGCTTGTTTTTACCAT+TGG | + | 43357:15841-15860 | None:intergenic | 35.0% |
!!! | GACTTGCAGACTTTTTTTGA+CGG | + | 43357:13715-13734 | None:intergenic | 35.0% |
!!! | TAGAGTTTTTTGATACCTCG+AGG | + | 43357:12152-12171 | None:intergenic | 35.0% |
AAAATTGACCACACCTGATC+AGG | + | 43357:14370-14389 | None:intergenic | 40.0% | |
ACCTGTTGTCTAAGTCTGAT+TGG | - | 43357:14153-14172 | MS.gene41916:intron | 40.0% | |
ACGTTCAGGCCAAAATATTC+TGG | + | 43357:14420-14439 | None:intergenic | 40.0% | |
AGCCCAGCAAAAATTGGATT+CGG | + | 43357:12943-12962 | None:intergenic | 40.0% | |
ATATGTTGTCAACACCACCA+AGG | + | 43357:13902-13921 | None:intergenic | 40.0% | |
CACTCTTGAACCATTTGAGA+GGG | - | 43357:16384-16403 | MS.gene41916:intron | 40.0% | |
CATCATCCAAGAAGTCTTGA+AGG | + | 43357:15388-15407 | None:intergenic | 40.0% | |
CGTCATTCAAGAAGTCTTGA+AGG | + | 43357:14714-14733 | None:intergenic | 40.0% | |
CTGATATTGTTGGTCCAGTA+AGG | - | 43357:14080-14099 | MS.gene41916:intron | 40.0% | |
GACTGTCGAATCAATGCAAT+TGG | + | 43357:16293-16312 | None:intergenic | 40.0% | |
GGCTTCTAAACAAACCTTGA+TGG | + | 43357:15157-15176 | None:intergenic | 40.0% | |
TCACTCTTGAACCATTTGAG+AGG | - | 43357:16383-16402 | MS.gene41916:intron | 40.0% | |
TCATCCAAGAAGTCTTGAAG+GGG | + | 43357:15386-15405 | None:intergenic | 40.0% | |
TCATTGTAAACAGCTTCACC+AGG | + | 43357:13350-13369 | None:intergenic | 40.0% | |
TCCAATCAGACTTAGACAAC+AGG | + | 43357:14157-14176 | None:intergenic | 40.0% | |
TCTCACGTGTCTGATATTGT+TGG | - | 43357:14070-14089 | MS.gene41916:intron | 40.0% | |
TGCTGCAGGCAAGAATATTA+GGG | - | 43357:15085-15104 | MS.gene41916:intron | 40.0% | |
TGTGCATGTGATGAGTTACT+CGG | - | 43357:15357-15376 | MS.gene41916:CDS | 40.0% | |
TTGATGTGCATCAGTATCTC+GGG | + | 43357:15415-15434 | None:intergenic | 40.0% | |
TTTATGTGCATCAGCATCTC+GGG | + | 43357:14741-14760 | None:intergenic | 40.0% | |
! | CATCCGAATCCAATTTTTGC+TGG | - | 43357:12937-12956 | MS.gene41916:intron | 40.0% |
! | TCTAATTTGATGAGTGCTGC+AGG | - | 43357:15071-15090 | MS.gene41916:intron | 40.0% |
! | TTTTGAATATGTGCAGGTCG+TGG | - | 43357:13050-13069 | MS.gene41916:intron | 40.0% |
!! | TCAAGAGTGACTTGCTCAAA+TGG | + | 43357:16373-16392 | None:intergenic | 40.0% |
!! | TTGGTGGTGTTGACAACATA+TGG | - | 43357:13901-13920 | MS.gene41916:intron | 40.0% |
!!! | AGTTTTTTGATACCTCGAGG+AGG | + | 43357:12149-12168 | None:intergenic | 40.0% |
ATCCACCAACAACACAAGCA+TGG | + | 43357:16411-16430 | None:intergenic | 45.0% | |
GATTCCCCTTCAAGACTTCT+TGG | - | 43357:14705-14724 | MS.gene41916:CDS | 45.0% | |
GGCGAGACTTATTGATCCAA+TGG | - | 43357:15822-15841 | MS.gene41916:intron | 45.0% | |
GTGCTGCAGGCAAGAATATT+AGG | - | 43357:15084-15103 | MS.gene41916:intron | 45.0% | |
TAACCAAGTCACGTCCACTT+CGG | + | 43357:14234-14253 | None:intergenic | 45.0% | |
TACATTGTGCAGAGTGAGGA+TGG | - | 43357:13819-13838 | MS.gene41916:intron | 45.0% | |
TGGAATGAAAGGAGGAAGCA+AGG | - | 43357:13244-13263 | MS.gene41916:intron | 45.0% | |
! | CAGTGAGGTGAACAAGTTGA+AGG | - | 43357:16333-16352 | MS.gene41916:intron | 45.0% |
! | TGAGGTGAACAAGTTGAAGG+CGG | - | 43357:16336-16355 | MS.gene41916:intron | 45.0% |
!! | TGGACGTGACTTGGTTAACA+TGG | - | 43357:14237-14256 | MS.gene41916:CDS | 45.0% |
!! | ATAAATGATTAAAATAAATA+AGG | + | 43357:13507-13526 | None:intergenic | 5.0% |
ACTTCCGACTGCACACAAAC+CGG | + | 43357:12814-12833 | None:intergenic | 50.0% | |
AGGGACCATGCTTGTGTTGT+TGG | - | 43357:16403-16422 | MS.gene41916:intron | 50.0% | |
AGGTACAGGACTTTAGCACC+AGG | + | 43357:14025-14044 | None:intergenic | 50.0% | |
CAAGCATGGTCCCTCTCAAA+TGG | + | 43357:16397-16416 | None:intergenic | 50.0% | |
CTGCCAACTTAGAGCGGAAA+GGG | + | 43357:13872-13891 | None:intergenic | 50.0% | |
GGAAGAGGTGGAATGAAAGG+AGG | - | 43357:13236-13255 | MS.gene41916:intron | 50.0% | |
GGTGCTAAAGTCCTGTACCT+AGG | - | 43357:14025-14044 | MS.gene41916:intron | 50.0% | |
GTAGAATTCTCCCACCGAAG+TGG | - | 43357:14217-14236 | MS.gene41916:intron | 50.0% | |
GTTGAGCCCCATAGACATGA+AGG | - | 43357:13272-13291 | MS.gene41916:intron | 50.0% | |
TGAATATGTGCAGGTCGTGG+TGG | - | 43357:13053-13072 | MS.gene41916:intron | 50.0% | |
TGATGTTGCTCAGCCTGATC+AGG | - | 43357:14354-14373 | MS.gene41916:CDS | 50.0% | |
TGTACCTAGGAGCTGCTTCA+GGG | - | 43357:14038-14057 | MS.gene41916:intron | 50.0% | |
! | GAACCCTTTCCGCTCTAAGT+TGG | - | 43357:13866-13885 | MS.gene41916:intron | 50.0% |
! | GACCATGCTTGTGTTGTTGG+TGG | - | 43357:16406-16425 | MS.gene41916:intron | 50.0% |
! | GATTTTAAGCCTCGTGGTGG+AGG | - | 43357:13152-13171 | MS.gene41916:intron | 50.0% |
! | GGAGATTTTAAGCCTCGTGG+TGG | - | 43357:13149-13168 | MS.gene41916:intron | 50.0% |
! | GGAGGAGATTTTAAGCCTCG+TGG | - | 43357:13146-13165 | MS.gene41916:intron | 50.0% |
!! | AGAGGTTTTGGTGGAGGAAG+AGG | - | 43357:13125-13144 | MS.gene41916:intron | 50.0% |
AAACCTCTACCTCCACCACG+AGG | + | 43357:13164-13183 | None:intergenic | 55.0% | |
AAGTTGGCAGCTGCTGTCCT+TGG | - | 43357:13882-13901 | MS.gene41916:intron | 55.0% | |
CAAGTCACGTCCACTTCGGT+GGG | + | 43357:14230-14249 | None:intergenic | 55.0% | |
CAGCAGCTGCCAACTTAGAG+CGG | + | 43357:13878-13897 | None:intergenic | 55.0% | |
CTCACTGCTGAACACTGCCT+CGG | + | 43357:16320-16339 | None:intergenic | 55.0% | |
CTGAAGCAGCTCCTAGGTAC+AGG | + | 43357:14039-14058 | None:intergenic | 55.0% | |
CTGTACCTAGGAGCTGCTTC+AGG | - | 43357:14037-14056 | MS.gene41916:intron | 55.0% | |
GCTGCCAACTTAGAGCGGAA+AGG | + | 43357:13873-13892 | None:intergenic | 55.0% | |
GGCGGAAGAGGTGGAATGAA+AGG | - | 43357:13233-13252 | MS.gene41916:intron | 55.0% | |
TGTGCAGGTCGTGGTGGTTT+CGG | - | 43357:13059-13078 | MS.gene41916:intron | 55.0% | |
TTGCTCAGCCTGATCAGGTG+TGG | - | 43357:14359-14378 | MS.gene41916:CDS | 55.0% | |
TTGTCCCTGAAGCAGCTCCT+AGG | + | 43357:14045-14064 | None:intergenic | 55.0% | |
! | GGATCCGGTTTGTGTGCAGT+CGG | - | 43357:12807-12826 | MS.gene41916:intron | 55.0% |
!! | CGTGGTGGAGGTAGAGGTTT+TGG | - | 43357:13164-13183 | MS.gene41916:intron | 55.0% |
!! | GGAGGTAGAGGTTTTGGTGG+AGG | - | 43357:13119-13138 | MS.gene41916:intron | 55.0% |
!! | GGTGGAGGTAGAGGTTTTGG+AGG | - | 43357:13116-13135 | MS.gene41916:intron | 55.0% |
!! | GGTGGAGGTAGAGGTTTTGG+TGG | - | 43357:13116-13135 | MS.gene41916:intron | 55.0% |
!! | GGTTTTGGTGGAGGAAGAGG+AGG | - | 43357:13128-13147 | MS.gene41916:intron | 55.0% |
!!! | AGAGGTTTTGGAGGAGGCAG+AGG | - | 43357:13176-13195 | MS.gene41916:intron | 55.0% |
!!! | GGAGGTAGAGGTTTTGGAGG+AGG | - | 43357:13170-13189 | MS.gene41916:intron | 55.0% |
!!! | GGTGGTGGAGGTAGAGGTTT+TGG | - | 43357:13113-13132 | MS.gene41916:intron | 55.0% |
CCAAGTCACGTCCACTTCGG+TGG | + | 43357:14231-14250 | None:intergenic | 60.0% | |
CCACCGAAGTGGACGTGACT+TGG | - | 43357:14228-14247 | MS.gene41916:intron | 60.0% | |
CGAGGCAGTGTTCAGCAGTG+AGG | - | 43357:16318-16337 | MS.gene41916:intron | 60.0% | |
CGTGGTGGTTTCGGAGGAAG+AGG | - | 43357:13068-13087 | MS.gene41916:intron | 60.0% | |
GACAGAGGAGGAAGAGGTGG+TGG | - | 43357:13095-13114 | MS.gene41916:intron | 60.0% | |
GGAAGAGGAGGTGACAGAGG+AGG | - | 43357:13083-13102 | MS.gene41916:intron | 60.0% | |
GGAGGAAGAGGAGGTGACAG+AGG | - | 43357:13080-13099 | MS.gene41916:intron | 60.0% | |
GGAGGTGACAGAGGAGGAAG+AGG | - | 43357:13089-13108 | MS.gene41916:intron | 60.0% | |
GGTGACAGAGGAGGAAGAGG+TGG | - | 43357:13092-13111 | MS.gene41916:intron | 60.0% | |
GGTGGTTTCGGAGGAAGAGG+AGG | - | 43357:13071-13090 | MS.gene41916:intron | 60.0% | |
TGATTCGACAGTCCCTGCCG+AGG | - | 43357:16300-16319 | MS.gene41916:intron | 60.0% | |
TGCTGAACACTGCCTCGGCA+GGG | + | 43357:16315-16334 | None:intergenic | 60.0% | |
TTGGCAGCTGCTGTCCTTGG+TGG | - | 43357:13885-13904 | MS.gene41916:intron | 60.0% | |
! | AAGCCTCGTGGTGGAGGTAG+AGG | - | 43357:13158-13177 | MS.gene41916:intron | 60.0% |
! | AGAGGAGGAAGAGGTGGTGG+TGG | - | 43357:13098-13117 | MS.gene41916:intron | 60.0% |
!! | AGAGGTGGTGGTGGAGGTAG+AGG | - | 43357:13107-13126 | MS.gene41916:intron | 60.0% |
ACCACCCCTTCCTCCTCCAC+GGG | + | 43357:13204-13223 | None:intergenic | 65.0% | |
AGGAGCCCGTGGAGGAGGAA+GGG | - | 43357:13196-13215 | MS.gene41916:intron | 65.0% | |
CACCACCCCTTCCTCCTCCA+CGG | + | 43357:13205-13224 | None:intergenic | 65.0% | |
CTGCTGAACACTGCCTCGGC+AGG | + | 43357:16316-16335 | None:intergenic | 65.0% | |
GCAGGTCGTGGTGGTTTCGG+AGG | - | 43357:13062-13081 | MS.gene41916:intron | 65.0% | |
!! | GGAGGAAGAGGTGGTGGTGG+AGG | - | 43357:13101-13120 | MS.gene41916:intron | 65.0% |
CGTGGAGGAGGAAGGGGTGG+TGG | - | 43357:13203-13222 | MS.gene41916:intron | 70.0% | |
GAGGAGCCCGTGGAGGAGGA+AGG | - | 43357:13195-13214 | MS.gene41916:intron | 70.0% | |
GGAGCCCGTGGAGGAGGAAG+GGG | - | 43357:13197-13216 | MS.gene41916:intron | 70.0% | |
! | AGGGGTGGTGGTCGTGGTGG+CGG | - | 43357:13215-13234 | MS.gene41916:intron | 70.0% |
! | GGAAGGGGTGGTGGTCGTGG+TGG | - | 43357:13212-13231 | MS.gene41916:intron | 70.0% |
! | GGAGGAAGGGGTGGTGGTCG+TGG | - | 43357:13209-13228 | MS.gene41916:intron | 70.0% |
!! | GGTCGTGGTGGCGGAAGAGG+TGG | - | 43357:13224-13243 | MS.gene41916:intron | 70.0% |
!! | GGTGGTCGTGGTGGCGGAAG+AGG | - | 43357:13221-13240 | MS.gene41916:intron | 70.0% |
GCCCGTGGAGGAGGAAGGGG+TGG | - | 43357:13200-13219 | MS.gene41916:intron | 75.0% | |
GGAGGAGGCAGAGGAGCCCG+TGG | - | 43357:13185-13204 | MS.gene41916:intron | 75.0% | |
GGAGGCAGAGGAGCCCGTGG+AGG | - | 43357:13188-13207 | MS.gene41916:intron | 75.0% | |
GGCAGAGGAGCCCGTGGAGG+AGG | - | 43357:13191-13210 | MS.gene41916:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
43357 | gene | 12140 | 16465 | 12140 | ID=MS.gene41916 |
43357 | mRNA | 12140 | 16465 | 12140 | ID=MS.gene41916.t1;Parent=MS.gene41916 |
43357 | exon | 16450 | 16465 | 16450 | ID=MS.gene41916.t1.exon1;Parent=MS.gene41916.t1 |
43357 | CDS | 16450 | 16465 | 16450 | ID=cds.MS.gene41916.t1;Parent=MS.gene41916.t1 |
43357 | exon | 15217 | 15539 | 15217 | ID=MS.gene41916.t1.exon2;Parent=MS.gene41916.t1 |
43357 | CDS | 15217 | 15539 | 15217 | ID=cds.MS.gene41916.t1;Parent=MS.gene41916.t1 |
43357 | exon | 14679 | 14774 | 14679 | ID=MS.gene41916.t1.exon3;Parent=MS.gene41916.t1 |
43357 | CDS | 14679 | 14774 | 14679 | ID=cds.MS.gene41916.t1;Parent=MS.gene41916.t1 |
43357 | exon | 14509 | 14586 | 14509 | ID=MS.gene41916.t1.exon4;Parent=MS.gene41916.t1 |
43357 | CDS | 14509 | 14586 | 14509 | ID=cds.MS.gene41916.t1;Parent=MS.gene41916.t1 |
43357 | exon | 14230 | 14406 | 14230 | ID=MS.gene41916.t1.exon5;Parent=MS.gene41916.t1 |
43357 | CDS | 14230 | 14406 | 14230 | ID=cds.MS.gene41916.t1;Parent=MS.gene41916.t1 |
43357 | exon | 13444 | 13512 | 13444 | ID=MS.gene41916.t1.exon6;Parent=MS.gene41916.t1 |
43357 | CDS | 13444 | 13512 | 13444 | ID=cds.MS.gene41916.t1;Parent=MS.gene41916.t1 |
43357 | exon | 12140 | 12316 | 12140 | ID=MS.gene41916.t1.exon7;Parent=MS.gene41916.t1 |
43357 | CDS | 12140 | 12316 | 12140 | ID=cds.MS.gene41916.t1;Parent=MS.gene41916.t1 |
Gene Sequence |
Protein sequence |