AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41916


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41916.t1 MTR_6g047580 99.035 311 1 1 1 311 1 309 0.0 606
MS.gene41916.t1 MTR_6g047580 88.746 311 1 2 1 311 1 277 0.0 535
MS.gene41916.t1 MTR_1g114000 97.143 245 7 0 67 311 69 313 1.87e-177 493
MS.gene41916.t1 MTR_6g047580 98.425 254 2 1 1 254 1 252 1.13e-174 484
MS.gene41916.t1 MTR_6g047580 88.506 261 26 2 1 261 1 257 2.29e-157 440
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41916.t1 AT4G25630 90.574 244 23 0 67 310 74 317 7.22e-167 466
MS.gene41916.t1 AT5G52470 90.909 242 22 0 67 308 63 304 5.83e-166 464
MS.gene41916.t1 AT5G52490 62.745 306 100 1 1 306 1 292 4.15e-122 352
MS.gene41916.t1 AT5G52470 93.902 164 10 0 67 230 63 226 5.61e-111 323

Find 0 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTATCATATTTGATAT+GGG - 43357:12244-12263 MS.gene41916:CDS 10.0%
!! TTAATTTATCATATTTGATA+TGG - 43357:12243-12262 MS.gene41916:CDS 10.0%
!!! AGTTAATTGATTAAATTTTT+TGG - 43357:12579-12598 MS.gene41916:intron 10.0%
!!! TTATTTTGTCATAATTAATA+TGG - 43357:12541-12560 MS.gene41916:intron 10.0%
!!! TTTAATCAATTTATTTTGTA+TGG - 43357:16263-16282 MS.gene41916:intron 10.0%
!! AAGTCATATCAAATTAAATT+TGG + 43357:15178-15197 None:intergenic 15.0%
!! AATTAAATTGAAACAGAAAA+AGG + 43357:12179-12198 None:intergenic 15.0%
!! AGTAAAATTATAAAGAAAAG+AGG + 43357:16046-16065 None:intergenic 15.0%
!! ATTATGACAAAATAAACAAA+AGG + 43357:12536-12555 None:intergenic 15.0%
!! TAAATAATGAAAAATCTGAA+AGG + 43357:14854-14873 None:intergenic 15.0%
!! TTATGACAAAATAAACAAAA+GGG + 43357:12535-12554 None:intergenic 15.0%
!! TTCAAAATGTCAAATAAAAA+TGG + 43357:14821-14840 None:intergenic 15.0%
!! TTCATTTATTGAAATCAAAT+GGG - 43357:12635-12654 MS.gene41916:intron 15.0%
!! TTCATTTGTTTAAATCAAAT+GGG - 43357:12749-12768 MS.gene41916:intron 15.0%
!! TTTCATTTATTGAAATCAAA+TGG - 43357:12634-12653 MS.gene41916:intron 15.0%
!! TTTCATTTGTTTAAATCAAA+TGG - 43357:12748-12767 MS.gene41916:intron 15.0%
!!! CTTTTTAAATTTTAACTGAA+TGG - 43357:13405-13424 MS.gene41916:intron 15.0%
!!! TGATTAAATTTTTTGGATTT+TGG - 43357:12586-12605 MS.gene41916:intron 15.0%
!!! TTTTTAAGTTTGTTTTGTAT+TGG - 43357:16164-16183 MS.gene41916:intron 15.0%
!! AAATTGATATATAGACTATG+TGG + 43357:15631-15650 None:intergenic 20.0%
!! AATATGATAAATTAAACACG+AGG + 43357:12238-12257 None:intergenic 20.0%
!! ATATAACATATATAACGTTC+AGG + 43357:14434-14453 None:intergenic 20.0%
!! ATATGATAAATTAAACACGA+GGG + 43357:12237-12256 None:intergenic 20.0%
!! ATGGAAAACAAAAAAAAAAG+GGG + 43357:14621-14640 None:intergenic 20.0%
!! CAAAACAAACTTAAAAAACA+AGG + 43357:16161-16180 None:intergenic 20.0%
!! CATTCATTTCAAAGTATAAA+AGG - 43357:14641-14660 MS.gene41916:intron 20.0%
!! CCTTGATAGATATATAAAAA+TGG + 43357:15905-15924 None:intergenic 20.0%
!! GATGGAAAACAAAAAAAAAA+GGG + 43357:14622-14641 None:intergenic 20.0%
!! TGATGGAAAACAAAAAAAAA+AGG + 43357:14623-14642 None:intergenic 20.0%
!! TTAAATTCCTAAAAACTGAA+AGG + 43357:15267-15286 None:intergenic 20.0%
!!! AGATATATAGATTTTAAGCT+AGG + 43357:12883-12902 None:intergenic 20.0%
!!! ATCAATTTATTTTGTATGGT+AGG - 43357:16267-16286 MS.gene41916:intron 20.0%
!!! ATTTTTTCCTTTCAGTTTTT+AGG - 43357:15257-15276 MS.gene41916:CDS 20.0%
!!! CCATTTTTATATATCTATCA+AGG - 43357:15902-15921 MS.gene41916:intron 20.0%
!!! GTATTTAGGTTATATATTTC+CGG - 43357:15965-15984 MS.gene41916:intron 20.0%
!!! GTTTTCATTTTAGTTTTCAT+TGG - 43357:16197-16216 MS.gene41916:intron 20.0%
!!! TATTTAGGTTATATATTTCC+GGG - 43357:15966-15985 MS.gene41916:intron 20.0%
!!! TGTGATAATAAGAAGTATTT+GGG + 43357:15680-15699 None:intergenic 20.0%
!!! TTAGCTTTATTTGTTGAAAT+GGG - 43357:12341-12360 MS.gene41916:intron 20.0%
!!! TTATACTTTGAAATGAATGA+TGG + 43357:14640-14659 None:intergenic 20.0%
!!! TTATGACTTTTATCACAATA+AGG - 43357:15935-15954 MS.gene41916:intron 20.0%
!!! TTATTTGACATTTTGAAGTT+TGG - 43357:14824-14843 MS.gene41916:intron 20.0%
!!! TTCTATTTTATAAAGAAACC+TGG - 43357:14004-14023 MS.gene41916:intron 20.0%
!!! TTGTGATAATAAGAAGTATT+TGG + 43357:15681-15700 None:intergenic 20.0%
!!! TTTAGCTTTATTTGTTGAAA+TGG - 43357:12340-12359 MS.gene41916:intron 20.0%
! AACAAACTTAAAAAACAAGG+AGG + 43357:16158-16177 None:intergenic 25.0%
! AATAAGGCAAAGTTGTATTT+AGG - 43357:15951-15970 MS.gene41916:intron 25.0%
! ACTTCTTATTATCACAAAGT+TGG - 43357:15684-15703 MS.gene41916:intron 25.0%
! AGTTGATTGAATAGAAAGTT+TGG - 43357:12281-12300 MS.gene41916:CDS 25.0%
! ATTATTTGCATGGTTTGAAA+AGG + 43357:13654-13673 None:intergenic 25.0%
! CAAAAGTTGAGTATAGAATT+TGG - 43357:13844-13863 MS.gene41916:intron 25.0%
! GTAATGACACAATAAACTAA+CGG + 43357:13784-13803 None:intergenic 25.0%
! TATCATATTTGATATGGGTT+TGG - 43357:12249-12268 MS.gene41916:CDS 25.0%
! TGTTTCGTTATCTGTATATT+GGG - 43357:15207-15226 MS.gene41916:intron 25.0%
! TTGTTTCGTTATCTGTATAT+TGG - 43357:15206-15225 MS.gene41916:intron 25.0%
!! AGTTTTCATTGGATAGTAAA+TGG - 43357:16208-16227 MS.gene41916:intron 25.0%
!! ATTTTAAGCTAGGCTTTTAT+CGG + 43357:12873-12892 None:intergenic 25.0%
!! GATTGATTGATTGTTTTCTA+TGG - 43357:14879-14898 MS.gene41916:intron 25.0%
!! TCAAATGGGTTTATAGTAAT+AGG - 43357:12649-12668 MS.gene41916:intron 25.0%
!!! AAAAGAGGATATTTAGTTTG+TGG + 43357:16031-16050 None:intergenic 25.0%
!!! CACTGATTTATCTTAAATGA+TGG - 43357:14392-14411 MS.gene41916:intron 25.0%
!!! TCATTGATGATGTTTTTGTT+GGG - 43357:12611-12630 MS.gene41916:intron 25.0%
!!! TCATTTTGTTATATCCATCA+AGG - 43357:15140-15159 MS.gene41916:intron 25.0%
!!! TTCATTGATGATGTTTTTGT+TGG - 43357:12610-12629 MS.gene41916:intron 25.0%
!!! TTTTAGATTATTTCTCAGCT+TGG + 43357:16238-16257 None:intergenic 25.0%
AAAATACCTTCATGTCTATG+GGG + 43357:13281-13300 None:intergenic 30.0%
AAACAAGGAGGTTAATTTAC+AGG + 43357:16146-16165 None:intergenic 30.0%
AAACTATCAATTTCACTTGG+TGG + 43357:16105-16124 None:intergenic 30.0%
AAACTGATACTTACACAACA+TGG + 43357:15044-15063 None:intergenic 30.0%
AAATTTGAATGAACCCTTAC+TGG + 43357:14097-14116 None:intergenic 30.0%
AAGGAAAAAATCAGAACACT+AGG + 43357:15248-15267 None:intergenic 30.0%
AGGAAAAAATCAGAACACTA+GGG + 43357:15247-15266 None:intergenic 30.0%
CTTATTATCACAAAGTTGGA+GGG - 43357:15688-15707 MS.gene41916:intron 30.0%
GAAAATACCTTCATGTCTAT+GGG + 43357:13282-13301 None:intergenic 30.0%
GAGAAACTATCAATTTCACT+TGG + 43357:16108-16127 None:intergenic 30.0%
GCTTCATATTATCTTAAAGC+CGG - 43357:15114-15133 MS.gene41916:intron 30.0%
GTGGAAAACAAATTTATGCA+TGG + 43357:15756-15775 None:intergenic 30.0%
GTTTATAGTAATAGGCTTGA+AGG - 43357:12657-12676 MS.gene41916:intron 30.0%
TAACCAAAACACTTGATACA+TGG + 43357:15318-15337 None:intergenic 30.0%
TAAGAGGACAGTTATATACT+TGG + 43357:14483-14502 None:intergenic 30.0%
TAATGTCATTCCCATTATTG+AGG - 43357:14273-14292 MS.gene41916:CDS 30.0%
TCACATCTCATTTGATCAAA+TGG - 43357:15801-15820 MS.gene41916:intron 30.0%
TCTTATTATCACAAAGTTGG+AGG - 43357:15687-15706 MS.gene41916:intron 30.0%
TGAAAATACCTTCATGTCTA+TGG + 43357:13283-13302 None:intergenic 30.0%
TGCAAAAACAAGTAGATAAG+AGG + 43357:14499-14518 None:intergenic 30.0%
TTACTTGTGCATTATAGACT+TGG - 43357:15879-15898 MS.gene41916:intron 30.0%
! ATGATGGTACCAGAATATTT+TGG - 43357:14408-14427 MS.gene41916:intron 30.0%
! CAAATGGGTTTATAGTTAGT+GGG - 43357:12764-12783 MS.gene41916:intron 30.0%
! GATTAGACGTATTGATCTAA+TGG + 43357:15778-15797 None:intergenic 30.0%
! GCTCAAAGCAATAATTTGTA+GGG - 43357:12786-12805 MS.gene41916:intron 30.0%
! TCAAATGGGTTTATAGTTAG+TGG - 43357:12763-12782 MS.gene41916:intron 30.0%
! TGAAATGGGTTTAGAGTAAT+AGG - 43357:12355-12374 MS.gene41916:intron 30.0%
! TTTCCATGTATCAAGTGTTT+TGG - 43357:15312-15331 MS.gene41916:CDS 30.0%
!! AGCTTGATTTGTGTTGATAA+TGG - 43357:13024-13043 MS.gene41916:intron 30.0%
!!! CTTATCTACTTGTTTTTGCA+TGG - 43357:14499-14518 MS.gene41916:intron 30.0%
!!! GAAGGTATTTTCATTGCTAA+GGG - 43357:13290-13309 MS.gene41916:intron 30.0%
!!! TGAAGGTATTTTCATTGCTA+AGG - 43357:13289-13308 MS.gene41916:intron 30.0%
AAATTGAGAGAATCCATTCC+CGG + 43357:15987-16006 None:intergenic 35.0%
AACACTAGGGAAAACTAAAC+AGG + 43357:15234-15253 None:intergenic 35.0%
AATGAACTGTGTAACGTTTG+AGG - 43357:12414-12433 MS.gene41916:intron 35.0%
ACTAACATTCTATACTTGGC+TGG + 43357:14310-14329 None:intergenic 35.0%
ACTGTCACCAAAATATGAGT+TGG - 43357:15010-15029 MS.gene41916:intron 35.0%
AGAGCACACAATTATTTGCA+TGG + 43357:13664-13683 None:intergenic 35.0%
AGGTTATATATTTCCGGGAA+TGG - 43357:15971-15990 MS.gene41916:intron 35.0%
AGTGCATATGATGAGTTACT+CGG - 43357:14683-14702 MS.gene41916:CDS 35.0%
ATCATCCAAGAAGTCTTGAA+GGG + 43357:15387-15406 None:intergenic 35.0%
ATGTCTAGCATCCTCAATAA+TGG + 43357:14287-14306 None:intergenic 35.0%
ATTATGCTAAACAACAGTGC+TGG - 43357:15469-15488 MS.gene41916:CDS 35.0%
CAGAATGCCTAAGAAGAAAA+AGG - 43357:16432-16451 MS.gene41916:intron 35.0%
CATAAAAGCCCAGCAAAAAT+TGG + 43357:12949-12968 None:intergenic 35.0%
CATATTCTGTGTATGTAGAC+TGG - 43357:14181-14200 MS.gene41916:intron 35.0%
GCCAACTAACATTCTATACT+TGG + 43357:14314-14333 None:intergenic 35.0%
GCCAAGTATAGAATGTTAGT+TGG - 43357:14310-14329 MS.gene41916:CDS 35.0%
GGATATAACAAAATGACCTC+CGG + 43357:15136-15155 None:intergenic 35.0%
GTATAGAATGTTAGTTGGCA+TGG - 43357:14315-14334 MS.gene41916:CDS 35.0%
GTCATTCAAGAAGTCTTGAA+GGG + 43357:14713-14732 None:intergenic 35.0%
GTTACTAAGAATCTTGTTCC+TGG - 43357:13329-13348 MS.gene41916:intron 35.0%
TCATATTATCTTAAAGCCGG+AGG - 43357:15117-15136 MS.gene41916:intron 35.0%
TCATTCAAGAAGTCTTGAAG+GGG + 43357:14712-14731 None:intergenic 35.0%
TGAAAAGAGAGTTTCTGTTC+AGG - 43357:13367-13386 MS.gene41916:intron 35.0%
TGATATTGTTGGTCCAGTAA+GGG - 43357:14081-14100 MS.gene41916:intron 35.0%
TGTCTAGCATCCTCAATAAT+GGG + 43357:14286-14305 None:intergenic 35.0%
TTTGATGTGCATCAGTATCT+CGG + 43357:15416-15435 None:intergenic 35.0%
! AAAGTCTGCAAGTCTGTTTT+TGG - 43357:13721-13740 MS.gene41916:intron 35.0%
! AGCAATAATTTGTAGGGATC+CGG - 43357:12792-12811 MS.gene41916:intron 35.0%
! ATCCGAATCCAATTTTTGCT+GGG - 43357:12938-12957 MS.gene41916:intron 35.0%
! GACTTGCTTATTAAGCACTT+TGG - 43357:15501-15520 MS.gene41916:CDS 35.0%
! GGCTCAAAGCAATAATTTGT+AGG - 43357:12785-12804 MS.gene41916:intron 35.0%
! GTCTCATCCAACTCATATTT+TGG + 43357:15020-15039 None:intergenic 35.0%
! GTTTAGAGTAATAGGCTTGA+AGG - 43357:12363-12382 MS.gene41916:intron 35.0%
! TAGACGTATTGATCTAATGG+TGG + 43357:15775-15794 None:intergenic 35.0%
! TCAGCATCCTTTTTCTTCTT+AGG + 43357:16442-16461 None:intergenic 35.0%
! TGGAGTTTTTGAATATGTGC+AGG - 43357:13044-13063 MS.gene41916:intron 35.0%
! TTTTATGTGCATCAGCATCT+CGG + 43357:14742-14761 None:intergenic 35.0%
! TTTTGGACGTGTACAAACTT+TGG - 43357:13738-13757 MS.gene41916:intron 35.0%
! TTTTTACATTGTGCAGAGTG+AGG - 43357:13815-13834 MS.gene41916:intron 35.0%
!!! AAAGTTGGAGGGCATTTTTT+AGG - 43357:15699-15718 MS.gene41916:intron 35.0%
!!! CACAAGCTTGTTTTTACCAT+TGG + 43357:15841-15860 None:intergenic 35.0%
!!! GACTTGCAGACTTTTTTTGA+CGG + 43357:13715-13734 None:intergenic 35.0%
!!! TAGAGTTTTTTGATACCTCG+AGG + 43357:12152-12171 None:intergenic 35.0%
AAAATTGACCACACCTGATC+AGG + 43357:14370-14389 None:intergenic 40.0%
ACCTGTTGTCTAAGTCTGAT+TGG - 43357:14153-14172 MS.gene41916:intron 40.0%
ACGTTCAGGCCAAAATATTC+TGG + 43357:14420-14439 None:intergenic 40.0%
AGCCCAGCAAAAATTGGATT+CGG + 43357:12943-12962 None:intergenic 40.0%
ATATGTTGTCAACACCACCA+AGG + 43357:13902-13921 None:intergenic 40.0%
CACTCTTGAACCATTTGAGA+GGG - 43357:16384-16403 MS.gene41916:intron 40.0%
CATCATCCAAGAAGTCTTGA+AGG + 43357:15388-15407 None:intergenic 40.0%
CGTCATTCAAGAAGTCTTGA+AGG + 43357:14714-14733 None:intergenic 40.0%
CTGATATTGTTGGTCCAGTA+AGG - 43357:14080-14099 MS.gene41916:intron 40.0%
GACTGTCGAATCAATGCAAT+TGG + 43357:16293-16312 None:intergenic 40.0%
GGCTTCTAAACAAACCTTGA+TGG + 43357:15157-15176 None:intergenic 40.0%
TCACTCTTGAACCATTTGAG+AGG - 43357:16383-16402 MS.gene41916:intron 40.0%
TCATCCAAGAAGTCTTGAAG+GGG + 43357:15386-15405 None:intergenic 40.0%
TCATTGTAAACAGCTTCACC+AGG + 43357:13350-13369 None:intergenic 40.0%
TCCAATCAGACTTAGACAAC+AGG + 43357:14157-14176 None:intergenic 40.0%
TCTCACGTGTCTGATATTGT+TGG - 43357:14070-14089 MS.gene41916:intron 40.0%
TGCTGCAGGCAAGAATATTA+GGG - 43357:15085-15104 MS.gene41916:intron 40.0%
TGTGCATGTGATGAGTTACT+CGG - 43357:15357-15376 MS.gene41916:CDS 40.0%
TTGATGTGCATCAGTATCTC+GGG + 43357:15415-15434 None:intergenic 40.0%
TTTATGTGCATCAGCATCTC+GGG + 43357:14741-14760 None:intergenic 40.0%
! CATCCGAATCCAATTTTTGC+TGG - 43357:12937-12956 MS.gene41916:intron 40.0%
! TCTAATTTGATGAGTGCTGC+AGG - 43357:15071-15090 MS.gene41916:intron 40.0%
! TTTTGAATATGTGCAGGTCG+TGG - 43357:13050-13069 MS.gene41916:intron 40.0%
!! TCAAGAGTGACTTGCTCAAA+TGG + 43357:16373-16392 None:intergenic 40.0%
!! TTGGTGGTGTTGACAACATA+TGG - 43357:13901-13920 MS.gene41916:intron 40.0%
!!! AGTTTTTTGATACCTCGAGG+AGG + 43357:12149-12168 None:intergenic 40.0%
ATCCACCAACAACACAAGCA+TGG + 43357:16411-16430 None:intergenic 45.0%
GATTCCCCTTCAAGACTTCT+TGG - 43357:14705-14724 MS.gene41916:CDS 45.0%
GGCGAGACTTATTGATCCAA+TGG - 43357:15822-15841 MS.gene41916:intron 45.0%
GTGCTGCAGGCAAGAATATT+AGG - 43357:15084-15103 MS.gene41916:intron 45.0%
TAACCAAGTCACGTCCACTT+CGG + 43357:14234-14253 None:intergenic 45.0%
TACATTGTGCAGAGTGAGGA+TGG - 43357:13819-13838 MS.gene41916:intron 45.0%
TGGAATGAAAGGAGGAAGCA+AGG - 43357:13244-13263 MS.gene41916:intron 45.0%
! CAGTGAGGTGAACAAGTTGA+AGG - 43357:16333-16352 MS.gene41916:intron 45.0%
! TGAGGTGAACAAGTTGAAGG+CGG - 43357:16336-16355 MS.gene41916:intron 45.0%
!! TGGACGTGACTTGGTTAACA+TGG - 43357:14237-14256 MS.gene41916:CDS 45.0%
!! ATAAATGATTAAAATAAATA+AGG + 43357:13507-13526 None:intergenic 5.0%
ACTTCCGACTGCACACAAAC+CGG + 43357:12814-12833 None:intergenic 50.0%
AGGGACCATGCTTGTGTTGT+TGG - 43357:16403-16422 MS.gene41916:intron 50.0%
AGGTACAGGACTTTAGCACC+AGG + 43357:14025-14044 None:intergenic 50.0%
CAAGCATGGTCCCTCTCAAA+TGG + 43357:16397-16416 None:intergenic 50.0%
CTGCCAACTTAGAGCGGAAA+GGG + 43357:13872-13891 None:intergenic 50.0%
GGAAGAGGTGGAATGAAAGG+AGG - 43357:13236-13255 MS.gene41916:intron 50.0%
GGTGCTAAAGTCCTGTACCT+AGG - 43357:14025-14044 MS.gene41916:intron 50.0%
GTAGAATTCTCCCACCGAAG+TGG - 43357:14217-14236 MS.gene41916:intron 50.0%
GTTGAGCCCCATAGACATGA+AGG - 43357:13272-13291 MS.gene41916:intron 50.0%
TGAATATGTGCAGGTCGTGG+TGG - 43357:13053-13072 MS.gene41916:intron 50.0%
TGATGTTGCTCAGCCTGATC+AGG - 43357:14354-14373 MS.gene41916:CDS 50.0%
TGTACCTAGGAGCTGCTTCA+GGG - 43357:14038-14057 MS.gene41916:intron 50.0%
! GAACCCTTTCCGCTCTAAGT+TGG - 43357:13866-13885 MS.gene41916:intron 50.0%
! GACCATGCTTGTGTTGTTGG+TGG - 43357:16406-16425 MS.gene41916:intron 50.0%
! GATTTTAAGCCTCGTGGTGG+AGG - 43357:13152-13171 MS.gene41916:intron 50.0%
! GGAGATTTTAAGCCTCGTGG+TGG - 43357:13149-13168 MS.gene41916:intron 50.0%
! GGAGGAGATTTTAAGCCTCG+TGG - 43357:13146-13165 MS.gene41916:intron 50.0%
!! AGAGGTTTTGGTGGAGGAAG+AGG - 43357:13125-13144 MS.gene41916:intron 50.0%
AAACCTCTACCTCCACCACG+AGG + 43357:13164-13183 None:intergenic 55.0%
AAGTTGGCAGCTGCTGTCCT+TGG - 43357:13882-13901 MS.gene41916:intron 55.0%
CAAGTCACGTCCACTTCGGT+GGG + 43357:14230-14249 None:intergenic 55.0%
CAGCAGCTGCCAACTTAGAG+CGG + 43357:13878-13897 None:intergenic 55.0%
CTCACTGCTGAACACTGCCT+CGG + 43357:16320-16339 None:intergenic 55.0%
CTGAAGCAGCTCCTAGGTAC+AGG + 43357:14039-14058 None:intergenic 55.0%
CTGTACCTAGGAGCTGCTTC+AGG - 43357:14037-14056 MS.gene41916:intron 55.0%
GCTGCCAACTTAGAGCGGAA+AGG + 43357:13873-13892 None:intergenic 55.0%
GGCGGAAGAGGTGGAATGAA+AGG - 43357:13233-13252 MS.gene41916:intron 55.0%
TGTGCAGGTCGTGGTGGTTT+CGG - 43357:13059-13078 MS.gene41916:intron 55.0%
TTGCTCAGCCTGATCAGGTG+TGG - 43357:14359-14378 MS.gene41916:CDS 55.0%
TTGTCCCTGAAGCAGCTCCT+AGG + 43357:14045-14064 None:intergenic 55.0%
! GGATCCGGTTTGTGTGCAGT+CGG - 43357:12807-12826 MS.gene41916:intron 55.0%
!! CGTGGTGGAGGTAGAGGTTT+TGG - 43357:13164-13183 MS.gene41916:intron 55.0%
!! GGAGGTAGAGGTTTTGGTGG+AGG - 43357:13119-13138 MS.gene41916:intron 55.0%
!! GGTGGAGGTAGAGGTTTTGG+AGG - 43357:13116-13135 MS.gene41916:intron 55.0%
!! GGTGGAGGTAGAGGTTTTGG+TGG - 43357:13116-13135 MS.gene41916:intron 55.0%
!! GGTTTTGGTGGAGGAAGAGG+AGG - 43357:13128-13147 MS.gene41916:intron 55.0%
!!! AGAGGTTTTGGAGGAGGCAG+AGG - 43357:13176-13195 MS.gene41916:intron 55.0%
!!! GGAGGTAGAGGTTTTGGAGG+AGG - 43357:13170-13189 MS.gene41916:intron 55.0%
!!! GGTGGTGGAGGTAGAGGTTT+TGG - 43357:13113-13132 MS.gene41916:intron 55.0%
CCAAGTCACGTCCACTTCGG+TGG + 43357:14231-14250 None:intergenic 60.0%
CCACCGAAGTGGACGTGACT+TGG - 43357:14228-14247 MS.gene41916:intron 60.0%
CGAGGCAGTGTTCAGCAGTG+AGG - 43357:16318-16337 MS.gene41916:intron 60.0%
CGTGGTGGTTTCGGAGGAAG+AGG - 43357:13068-13087 MS.gene41916:intron 60.0%
GACAGAGGAGGAAGAGGTGG+TGG - 43357:13095-13114 MS.gene41916:intron 60.0%
GGAAGAGGAGGTGACAGAGG+AGG - 43357:13083-13102 MS.gene41916:intron 60.0%
GGAGGAAGAGGAGGTGACAG+AGG - 43357:13080-13099 MS.gene41916:intron 60.0%
GGAGGTGACAGAGGAGGAAG+AGG - 43357:13089-13108 MS.gene41916:intron 60.0%
GGTGACAGAGGAGGAAGAGG+TGG - 43357:13092-13111 MS.gene41916:intron 60.0%
GGTGGTTTCGGAGGAAGAGG+AGG - 43357:13071-13090 MS.gene41916:intron 60.0%
TGATTCGACAGTCCCTGCCG+AGG - 43357:16300-16319 MS.gene41916:intron 60.0%
TGCTGAACACTGCCTCGGCA+GGG + 43357:16315-16334 None:intergenic 60.0%
TTGGCAGCTGCTGTCCTTGG+TGG - 43357:13885-13904 MS.gene41916:intron 60.0%
! AAGCCTCGTGGTGGAGGTAG+AGG - 43357:13158-13177 MS.gene41916:intron 60.0%
! AGAGGAGGAAGAGGTGGTGG+TGG - 43357:13098-13117 MS.gene41916:intron 60.0%
!! AGAGGTGGTGGTGGAGGTAG+AGG - 43357:13107-13126 MS.gene41916:intron 60.0%
ACCACCCCTTCCTCCTCCAC+GGG + 43357:13204-13223 None:intergenic 65.0%
AGGAGCCCGTGGAGGAGGAA+GGG - 43357:13196-13215 MS.gene41916:intron 65.0%
CACCACCCCTTCCTCCTCCA+CGG + 43357:13205-13224 None:intergenic 65.0%
CTGCTGAACACTGCCTCGGC+AGG + 43357:16316-16335 None:intergenic 65.0%
GCAGGTCGTGGTGGTTTCGG+AGG - 43357:13062-13081 MS.gene41916:intron 65.0%
!! GGAGGAAGAGGTGGTGGTGG+AGG - 43357:13101-13120 MS.gene41916:intron 65.0%
CGTGGAGGAGGAAGGGGTGG+TGG - 43357:13203-13222 MS.gene41916:intron 70.0%
GAGGAGCCCGTGGAGGAGGA+AGG - 43357:13195-13214 MS.gene41916:intron 70.0%
GGAGCCCGTGGAGGAGGAAG+GGG - 43357:13197-13216 MS.gene41916:intron 70.0%
! AGGGGTGGTGGTCGTGGTGG+CGG - 43357:13215-13234 MS.gene41916:intron 70.0%
! GGAAGGGGTGGTGGTCGTGG+TGG - 43357:13212-13231 MS.gene41916:intron 70.0%
! GGAGGAAGGGGTGGTGGTCG+TGG - 43357:13209-13228 MS.gene41916:intron 70.0%
!! GGTCGTGGTGGCGGAAGAGG+TGG - 43357:13224-13243 MS.gene41916:intron 70.0%
!! GGTGGTCGTGGTGGCGGAAG+AGG - 43357:13221-13240 MS.gene41916:intron 70.0%
GCCCGTGGAGGAGGAAGGGG+TGG - 43357:13200-13219 MS.gene41916:intron 75.0%
GGAGGAGGCAGAGGAGCCCG+TGG - 43357:13185-13204 MS.gene41916:intron 75.0%
GGAGGCAGAGGAGCCCGTGG+AGG - 43357:13188-13207 MS.gene41916:intron 75.0%
GGCAGAGGAGCCCGTGGAGG+AGG - 43357:13191-13210 MS.gene41916:intron 75.0%


Chromosome Type Strat End Strand Name
43357 gene 12140 16465 12140 ID=MS.gene41916
43357 mRNA 12140 16465 12140 ID=MS.gene41916.t1;Parent=MS.gene41916
43357 exon 16450 16465 16450 ID=MS.gene41916.t1.exon1;Parent=MS.gene41916.t1
43357 CDS 16450 16465 16450 ID=cds.MS.gene41916.t1;Parent=MS.gene41916.t1
43357 exon 15217 15539 15217 ID=MS.gene41916.t1.exon2;Parent=MS.gene41916.t1
43357 CDS 15217 15539 15217 ID=cds.MS.gene41916.t1;Parent=MS.gene41916.t1
43357 exon 14679 14774 14679 ID=MS.gene41916.t1.exon3;Parent=MS.gene41916.t1
43357 CDS 14679 14774 14679 ID=cds.MS.gene41916.t1;Parent=MS.gene41916.t1
43357 exon 14509 14586 14509 ID=MS.gene41916.t1.exon4;Parent=MS.gene41916.t1
43357 CDS 14509 14586 14509 ID=cds.MS.gene41916.t1;Parent=MS.gene41916.t1
43357 exon 14230 14406 14230 ID=MS.gene41916.t1.exon5;Parent=MS.gene41916.t1
43357 CDS 14230 14406 14230 ID=cds.MS.gene41916.t1;Parent=MS.gene41916.t1
43357 exon 13444 13512 13444 ID=MS.gene41916.t1.exon6;Parent=MS.gene41916.t1
43357 CDS 13444 13512 13444 ID=cds.MS.gene41916.t1;Parent=MS.gene41916.t1
43357 exon 12140 12316 12140 ID=MS.gene41916.t1.exon7;Parent=MS.gene41916.t1
43357 CDS 12140 12316 12140 ID=cds.MS.gene41916.t1;Parent=MS.gene41916.t1
Gene Sequence

>MS.gene41916

ATGGCTCCTCCTCGAGGTATCAAAAAACTCTACTATCCTTTTTCTGTTTCAATTTAATTTTCTAAATTTTTCAGTAATTTTGAATAAAAGAGTACCCTCGTGTTTAATTTATCATATTTGATATGGGTTTGGTTAATTATTAGTTGATTGAATAGAAAGTTTGGATTTTGAACTCATTGATGATATTATTTCATATTTTTTTTAGCTTTATTTGTTGAAATGGGTTTAGAGTAATAGGCTTGAAGGAATGATTATCGTTTGTAATTTTTTTTTTAATGAACTGTGTAACGTTTGAGGATCTAGCTTGTTTTGTGTTTGAGAAAACACTACTAATATTTTCTGTTTCAATCTATAAATTTCTTATTTTTTTTTATTTTTTTAATTAAAGAGTACCCTTTTGTTTATTTTGTCATAATTAATATGGATTTGTTGAAATATTAGTTAATTGATTAAATTTTTTGGATTTTGGATTCATTGATGATGTTTTTGTTGGGTTTCATTTATTGAAATCAAATGGGTTTATAGTAATAGGCTTGAAGGAATGCTTTTTATTTAATTTAATTTTTTATGAACTGTGTAGTGTTTGAAAAATGTTTTGTTTTTGTTACTTTCATTTGTTTAAATCAAATGGGTTTATAGTTAGTGGGCTCAAAGCAATAATTTGTAGGGATCCGGTTTGTGTGCAGTCGGAAGTGACGACACTGCAGATAGTCAGTCACATCTTAACTGTCCGATAAAAGCCTAGCTTAAAATCTATATATCTATATATGCTATTATGCATGCAGTTTGACTGTACTCATCCGAATCCAATTTTTGCTGGGCTTTTATGAACTGTGTAGTGTTTGAAGAATGTTGATTTTATTTGTAGAAGCATGTTGTGATCTAGCTTGATTTGTGTTGATAATGGAGTTTTTGAATATGTGCAGGTCGTGGTGGTTTCGGAGGAAGAGGAGGTGACAGAGGAGGAAGAGGTGGTGGTGGAGGTAGAGGTTTTGGTGGAGGAAGAGGAGGAGATTTTAAGCCTCGTGGTGGAGGTAGAGGTTTTGGAGGAGGCAGAGGAGCCCGTGGAGGAGGAAGGGGTGGTGGTCGTGGTGGCGGAAGAGGTGGAATGAAAGGAGGAAGCAAGGTTGTTGTTGAGCCCCATAGACATGAAGGTATTTTCATTGCTAAGGGTAAAGAAGATGCTCTTGTTACTAAGAATCTTGTTCCTGGTGAAGCTGTTTACAATGAAAAGAGAGTTTCTGTTCAGGTAATTTATTTTTGTACTTTTTAAATTTTAACTGAATGGTAATAGATTAAGTTAAAAATACATATGCATGTTTAAATTGTGCAATTGTTTAAGTATATACTTTATTATACTCGATCCTTATTTATTTTAATCATTTATACACTGTACATTATGTTAATCATTTATATTCTACATACTGCACTATACAATAATGTGCACTCTTTTACTTGTACTATACTATAGAATAATGTTCACTCTTTTACTTGATTTTACAACAACAATGCCTTTTCAAACCATGCAAATAATTGTGTGCTCTATTAGAAATTTAAGTTTGATTGTTTTTTCCGTCAAAAAAAGTCTGCAAGTCTGTTTTTGGACGTGTACAAACTTTGGCTATTTACTGTGTAGCACTTCCGTTAGTTTATTGTGTCATTACAATGTGTATGATTTTTACATTGTGCAGAGTGAGGATGGTACAAAAGTTGAGTATAGAATTTGGAACCCTTTCCGCTCTAAGTTGGCAGCTGCTGTCCTTGGTGGTGTTGACAACATATGGATTGTAAGCGACTTCGTTTTGCTTAGCATAATCTCATACTCGACATTGTCTTTCAGAAGCATTATATTGACATATATGTTTTCTATTTTATAAAGAAACCTGGTGCTAAAGTCCTGTACCTAGGAGCTGCTTCAGGGACAACTGTCTCTCACGTGTCTGATATTGTTGGTCCAGTAAGGGTTCATTCAAATTTGTGTGTATATATATATATATATATATTTTACTTATTACCTGTTGTCTAAGTCTGATTGGAATATCATATTCTGTGTATGTAGACTGGAGTTGTGTATGCAGTAGAATTCTCCCACCGAAGTGGACGTGACTTGGTTAACATGGCTAAGAAACGTACTAATGTCATTCCCATTATTGAGGATGCTAGACATCCAGCCAAGTATAGAATGTTAGTTGGCATGGTAGATGTCATATTTTCTGATGTTGCTCAGCCTGATCAGGTGTGGTCAATTTTTTCACTGATTTATCTTAAATGATGGTACCAGAATATTTTGGCCTGAACGTTATATATGTTATATCACTAATATTTATCTGCTGCTTCTAGCCAAGTATATAACTGTCCTCTTATCTACTTGTTTTTGCATGGATCAACAGTTTTAACATATATACACTGATTTTAAAGCTTACAGTTAGATTTCATTTTTCATGTTTTGCTTAGTTTCTCTAAACTTGTATTTTAAATCCCCTTTTTTTTTTGTTTTCCATCATTCATTTCAAAGTATAAAAGGTTTCTGTTACTACAATATCAGTGCATATGATGAGTTACTCGGATTCCCCTTCAAGACTTCTTGAATGACGTAGACCCGAGATGCTGATGCACATAAAAAAATTTGCTTCTCTTTTTTTATGCAATCTTGTTATGTTTTTTCTTTTTCAGTGCTACCATTTTTATTTGACATTTTGAAGTTTGGTTTTCCTTTCAGATTTTTCATTATTTACATCTGATTGATTGATTGTTTTCTATGGAAGAATCTCATTTGAAGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTATAATACACTGTCACCAAAATATGAGTTGGATGAGACTCCATGTTGTGTAAGTATCAGTTTTATTTGTTCTAATTTGATGAGTGCTGCAGGCAAGAATATTAGGGCTGAATGCTTCATATTATCTTAAAGCCGGAGGTCATTTTGTTATATCCATCAAGGTTTGTTTAGAAGCCAAATTTAATTTGATATGACTTTTATCACATTGTTTCGTTATCTGTATATTGGGTCCTGTTTAGTTTTCCCTAGTGTTCTGATTTTTTCCTTTCAGTTTTTAGGAATTTAAGTATGATTTTGTTTTTTAATTTTCATTTCCATGTATCAAGTGTTTTGGTTACAACATATATATGTATATCTGTGCATGTGATGAGTTACTCGGATTCCCCTTCAAGACTTCTTGGATGATGTAGACCCGAGATACTGATGCACATCAAAAGTTTTGTTTGTTTTTCTTTTTTATATTGTTCTATTATGCTAAACAACAGTGCTGGTTCAATAGTGACTTGCTTATTAAGCACTTTGGATTTTGTTTGAGATTTCATTTTTTTTTTTTGCAGCAGTCTTTTTTATTTGTCTTTTCGATGTTTGCTTTTCATATTGATTTTTCTTCTGTTACTTTTGAAAACTCCACATAGTCTATATATCAATTTTGTTTATACTAATTTGATGACTATAGCCCAAATACTTCTTATTATCACAAAGTTGGAGGGCATTTTTTAGGCATTATCTAATATGCACAAAATAGTATTGTACCATGCATAAATTTGTTTTCCACCATTAGATCAATACGTCTAATCTAATCACATCTCATTTGATCAAATGGCGAGACTTATTGATCCAATGGTAAAAACAAGCTTGTGCATAATGCAAGACTTGTTTTACTTGTGCATTATAGACTTGGCCATTTTTATATATCTATCAAGGTTTGTTGAATTTATGACTTTTATCACAATAAGGCAAAGTTGTATTTAGGTTATATATTTCCGGGAATGGATTCTCTCAATTTTTCTGAATTGTTACATGTCAACCACAAACTAAATATCCTCTTTTCTTTATAATTTTACTTCTCTTTTTCTCTCATGTTTAATGATGTAGATGTAACCACCAAGTGAAATTGATAGTTTCTCTTAAGAGAATTCATTCCTGTAAATTAACCTCCTTGTTTTTTAAGTTTGTTTTGTATTGGAAACAGTAGAGTTTTCATTTTAGTTTTCATTGGATAGTAAATGGATGTCCAAGCTGAGAAATAATCTAAAATCAAGTTTAATCAATTTATTTTGTATGGTAGGCCAATTGCATTGATTCGACAGTCCCTGCCGAGGCAGTGTTCAGCAGTGAGGTGAACAAGTTGAAGGCGGATCAATTTAAGCCATTTGAGCAAGTCACTCTTGAACCATTTGAGAGGGACCATGCTTGTGTTGTTGGTGGATACAGAATGCCTAAGAAGAAAAAGGATGCTGAATAG

Protein sequence

>MS.gene41916.t1

MAPPRGRGGFGGRGGDRGGRGGGGGRGFGGGRGGDFKPRGGGRGFGGGRGARGGGRGGGRGGGRGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRVSVQSEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTVPAEAVFSSEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDAE