AlfalfaGEDB | MS.gene06667

M. sativa cultivar XinJiangDaYe / MS.gene06667

KEGG: K07575
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
PFAM: PF01472.23 PF17832.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06667.t1	KEH35473.1	100	178	0	0	16	193	21	198	4.80E-96	360.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06667.t1	Q4G009	54.4	180	80	2	14	192	3	181	1.0e-51	204.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06667.t1	A0A072V298	100.0	178	0	0	16	193	21	198	3.4e-96	360.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049140	MS.gene06667	0.819038	1.43E-52	-1.69E-46
MS.gene049255	MS.gene06667	0.824134	9.51E-54	-1.69E-46
MS.gene049341	MS.gene06667	0.808495	3.01E-50	-1.69E-46
MS.gene049580	MS.gene06667	0.802143	6.45E-49	-1.69E-46
MS.gene049653	MS.gene06667	0.827831	1.26E-54	-1.69E-46
MS.gene049756	MS.gene06667	0.808405	3.15E-50	-1.69E-46
MS.gene049825	MS.gene06667	0.802595	5.21E-49	-1.69E-46
MS.gene04988	MS.gene06667	0.810998	8.72E-51	-1.69E-46
MS.gene050277	MS.gene06667	0.915904	3.38E-85	-1.69E-46
MS.gene050303	MS.gene06667	0.863938	1.74E-64	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene025104	MS.gene06667	PPI
MS.gene026076	MS.gene06667	PPI
MS.gene85635	MS.gene06667	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06667.t1	MTR_3g091920	94.792	192	9	1	2	193	8	198	1.71e-132	369
MS.gene06667.t1	MTR_3g091920	99.438	178	1	0	16	193	4	181	5.59e-132	367

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06667.t1	AT1G09150	84.270	178	28	0	16	193	4	181	7.78e-113	319
MS.gene06667.t1	AT1G71350	26.857	175	119	7	21	188	7	179	2.00e-12	65.5

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Find 46 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAATCTTATTGCACCA+CGG	0.718835	3.3:+76737553	None:intergenic
AAACAGCATGCCCTTGCCAT+TGG	0.482054	3.3:-76737324	MS.gene06667:CDS
AAAGCAATCAACAAGGGAAT+TGG	0.322873	3.3:-76736847	MS.gene06667:CDS
AAATATGAACTTTACATTGA+TGG	0.334633	3.3:+76738669	None:intergenic
AACCATTTAGCAACTATAAG+AGG	0.435947	3.3:+76738882	None:intergenic
AACTATAAGAGGTGACTTCT+TGG	0.338003	3.3:+76738893	None:intergenic
AACTTGCATTATCTCAATGA+TGG	0.525811	3.3:-76736817	MS.gene06667:CDS
AAGAAATTACAAGTTGACCG+TGG	0.749697	3.3:-76737570	MS.gene06667:CDS
AAGCAATCAACAAGGGAATT+GGG	0.354037	3.3:-76736846	MS.gene06667:CDS
ACATTGATGGAGAAGTCGCA+AGG	0.629589	3.3:+76738682	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAATCTTATTGCACCA+CGG	+	chr3.3:76738883-76738902	None:intergenic	30.0%
AAAGAGGCTCTTCATTTATT+TGG	+	chr3.3:76739230-76739249	None:intergenic	30.0%
AACCATTTAGCAACTATAAG+AGG	+	chr3.3:76737554-76737573	None:intergenic	30.0%
AACTTGCATTATCTCAATGA+TGG	-	chr3.3:76739616-76739635	MS.gene06667:intron	30.0%
AAGAGGCTCTTCATTTATTT+GGG	+	chr3.3:76739229-76739248	None:intergenic	30.0%
AATAAAACATAGGGCTAATG+TGG	-	chr3.3:76739469-76739488	MS.gene06667:intron	30.0%
ACATATGGTGAATACTGAAT+AGG	-	chr3.3:76737929-76737948	MS.gene06667:intron	30.0%
ACATTTAGATAACCTTGAGA+CGG	-	chr3.3:76738537-76738556	MS.gene06667:intron	30.0%
ACTAAAAAAAAAGTGGGCAT+TGG	+	chr3.3:76737007-76737026	None:intergenic	30.0%
ACTACCACTCAATAATAAGA+CGG	+	chr3.3:76738251-76738270	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	76736559	76739896	76736559	ID=MS.gene06667
chr3.3	mRNA	76736559	76739896	76736559	ID=MS.gene06667.t1;Parent=MS.gene06667
chr3.3	exon	76739850	76739896	76739850	ID=MS.gene06667.t1.exon1;Parent=MS.gene06667.t1
chr3.3	CDS	76739850	76739896	76739850	ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
chr3.3	exon	76739210	76739291	76739210	ID=MS.gene06667.t1.exon2;Parent=MS.gene06667.t1
chr3.3	CDS	76739210	76739291	76739210	ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
chr3.3	exon	76738885	76738952	76738885	ID=MS.gene06667.t1.exon3;Parent=MS.gene06667.t1
chr3.3	CDS	76738885	76738952	76738885	ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
chr3.3	exon	76738684	76738781	76738684	ID=MS.gene06667.t1.exon4;Parent=MS.gene06667.t1
chr3.3	CDS	76738684	76738781	76738684	ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
chr3.3	exon	76737470	76737606	76737470	ID=MS.gene06667.t1.exon5;Parent=MS.gene06667.t1
chr3.3	CDS	76737470	76737606	76737470	ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
chr3.3	exon	76737297	76737364	76737297	ID=MS.gene06667.t1.exon6;Parent=MS.gene06667.t1
chr3.3	CDS	76737297	76737364	76737297	ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
chr3.3	exon	76736807	76736870	76736807	ID=MS.gene06667.t1.exon7;Parent=MS.gene06667.t1
chr3.3	CDS	76736807	76736870	76736807	ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
chr3.3	exon	76736559	76736576	76736559	ID=MS.gene06667.t1.exon8;Parent=MS.gene06667.t1
chr3.3	CDS	76736559	76736576	76736559	ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1

Gene Sequence

>MS.gene06667

ATGTTAGATGGTAGGGTGTCAAATGGGGTGCAATATTTGAAAAACAGGTGTAAGTAGAAAACGAAGGCGTAAATGCATAATGTATTGACAATGATATTAAAGTTAGCAAAGGCCCATAATGGTTCAAATACAGAAACACCCTCGAGAGTTACACTGTTGCGTTTTGCATCTCTTTCTCTCTCTACAATACAATTTCAGACACAGACACAGATTCACTTTCATCTCAAAATCATCACCTTCAACTCAACGCACCATAAGATGTTCAAAAAGTACACTCTCTCACTCTACTCTCTGAATTCTAATTCATTCATTCACCATTTTCTTCTATATTAGTTTTTTCATTTTATTTAATTTATTTTTCGGAGTTATTCTGTCAGCAATTGCACCATTGCTCGTGGTGGTACCCTAAACCCTAAAAAAATGATTTAATTTCGTATTGAAATTTCCAATGCCCACTTTTTTTTTAGTACCTCTTTACACAATTGTTCATTAATTTATTTTATGATGTTGTTGCTTCAATCTACAATTGTTTATTGAAATTATGATTTTTCAATGCGTATCTTTAGATTCAAATGTCAAAAAAAAATTTTTTTTTTGCTTTTCAGATTTTCATCTGAAGAGGTGTCTGCACAGAATCAAGTGAAAGCATCTGTTCAAAGAAGAATACGTCAAAGTATTGCAGATGAGGTGATGTCGCCTTTTTTTTTTTTTGTGTTGGTTTTTGTTGTCCTTAGATATCACTAATTGTATGTGGGTTTGGTGCCGTGATTCTGTTTAAGCTTCAAAATGTTGTTTTTGCCTAACCACGGTGGCTCATCGTGATTCTGATAATTTTATGGTCAATCCAAACATGCATTAATTCACCAAACTATGCATCTTTTTTATTGCACGTGAGTTTGTTTTAACCATGTGACTATTAATTAACCTAAATTACTAAACTGCAGTATCCAGGACTTGAACCAGTGTTGGATGATATACTTCCCAAGAAGTCACCTCTTATAGTTGCTAAATGGTTCGTTTGTGAATTGTAGTTCTATTTGCTTTGAGGTTTTCGACGCATCATAAGTTTTATAGCTTCTAACTAGTAGTATTTGTTTTTTCCGTTGTTCTTGTAGTCAGAACCATCTCAATCTGGTTGTGGTGAACAATGTGCCTTTGTTTTTTAGTGTTCGTGATGGTCCGTACATGCCTACCTTGCGACTTCTCCATCAATGTAAAGTTCATATTTCTTGCAATTTTTAACTTGTTTGTAATATTCTTTCATCTGGGAGGGGAACAAGTCATCAGTAATGAATATTTCACTCTGTTTTTTTGAGTAATGCATATATGGATATAAACTACTTATAGGACGCAGCTGATCCGTGTTCAACACATATGGTGAATACTGAATAGGATGTTGAAAATTGAAATGTATTATAGAGAAAAACAATAGCTGTTTGGCTACCGAGAAACTTTCTAGTATAGAGAATACATGATAATGTTGATTGGTTGGATTCTCTTTCTTTAACTGTACTGTTCATACCAAAGGGCTATAAGGTTGAGCAACATCAATGTTCTGATTGGTATAATTTTCATGACACAGTGAATTAAGCTAGCCTCTTTTACTTTATATATGCATCTTTCTCTCAAGCATAGTGATGGAATCCAGATAATATCTTCAACACATAGTGAAATATTAAACTCATTCTGCCGTCTTATTATTGAGTGGTAGTATCTATAGAATGTTTGCAATTTAATCCAAGAGTTTTGCTAGTTTTAATGAACAAGAGAGAACATAAAGATCATACGGTTCTTCATCTATTTGTGATCTTATATTTATTTGTTAGATTCTCCTGAACCTTTGAGAACTGAGAAAACTTTCTTGACTTGCCCCTATTTATACTCCTCAAACCTTTTAATCCAGATAATATATGTGTTCTTCTCCTCAAACCTTTTAATCAAGATAATATATGTGTTCTTCTGACAGTATTTTTACCCCACATTTAGATAACCTTGAGACGGAGGGAGGGGGAAAACAAACCATTCTAGGAAATGGAGGGGGAAAACAAGCCATTGTTATTGCCTTGGTGGTTCCATTTTCTCACTTTGGTCATTACAATCCGCATTCGTCCTCTTTTTTAAAATGTAGGAAGTCGTCCGTAATTTATCAATTATCATTTCCTCCCTATACTTTGACCAAAAGCACCTATAAAACATGGAAGAGTTTCTAGGCTCACACACAGACATTATGCTCTGCAGTTGGTCTTTCTTATATTGCTTGTGAACTGTACTACTGTTTTTTATTTTTCAGATCCAGATATAATGAAGAAATTACAAGTTGACCGTGGTGCAATAAGATTTGTTTTGGCGGGTGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTTCTGGATGAGGAAGTGGGGGCAGAATGTCCTGTGGTACTGCCATTGTGTTTTGTAGATTGTTTGTAATACACAAAAAGTGAGCATTTTCTAGTGAATTTATATTAACATTCCTCATATCATGTATTTTTCTCATTTCAGGCCATCATGGCTGAAGGAAAACAGCATGCCCTTGCCATTGGATTTACAAAAATGTCAGCAAAAGACATGTAAGAAAATTGTTTCATCGCATGTTTTGTCTACATGTCTGTTGAATGAAATAAATATGAATGTTTTCCCAAATAAATGAAGAGCCTCTTTCAGAAACTCTGCCTCTTACCATTATACTCTCTGGTTGACATTCGTGAACATAGTAAAATTAGCATAAATAGCTTTTTATGTCATATTTCATTATCAGCCACAACCTCGTGCAATTAGAGGTGGAGCTACATGTTTAGGTGGGGGTGCAACCACTTCCTTCCACAAACAAGTTTTCCACTTTATTGCCATGTAGTATAAATTTTAATGGAAGCTCCCTCAAATAAAACATAGGGCTAATGTGGAAATAGAGATTAGAGATAAGATATGGCTAGCCTAGTTTCAGTTTCGATGATTGATTGTGCACTCAAGAAGTTCAACTACTTTCGTGGTTTCAGAAAAGCAATCAACAAGGGAATTGGGGTCGACAACTTGCATTATCTCAATGATGGTCTTTGGAAGGTATAAATTGATATATGATCTCCTTTGTATTCATGTACATATTAAATAAGTATACATACATAGTGGACATATTTATGTTATTCACTTATTTGATGTGCTACCATCGTGGCTTTTCTTATCTCTTTTGTTTATTTGGAATTTTGGATAGTATAACTTAATTGGGCTTACCAGTTACCGCTGATTTTTAATATATTATAGCCTAACAATCTTTATTTTATTCTATATTGTAGATGGAGCGATTTGATTGA

Protein sequence

>MS.gene06667.t1

MLDGRVSNGVQYLKNRFSSEEVSAQNQVKASVQRRIRQSIADEYPGLEPVLDDILPKKSPLIVAKCQNHLNLVVVNNVPLFFSVRDGPYMPTLRLLHQYPDIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGVLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKMERFD