AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06667


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06667.t1 MTR_3g091920 94.792 192 9 1 2 193 8 198 1.71e-132 369
MS.gene06667.t1 MTR_3g091920 99.438 178 1 0 16 193 4 181 5.59e-132 367
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06667.t1 AT1G09150 84.270 178 28 0 16 193 4 181 7.78e-113 319
MS.gene06667.t1 AT1G71350 26.857 175 119 7 21 188 7 179 2.00e-12 65.5

Find 46 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAATTTCTTCATTATATC+TGG 0.192913 3.3:+76737582 None:intergenic
CACCTCTTATAGTTGCTAAA+TGG 0.288298 3.3:-76738884 MS.gene06667:intron
AAAGCAATCAACAAGGGAAT+TGG 0.322873 3.3:-76736847 MS.gene06667:CDS
ATTATCTCAATGATGGTCTT+TGG 0.327245 3.3:-76736810 MS.gene06667:CDS
TGTCCTGGTCTTACATCTCC+TGG 0.329472 3.3:-76737510 MS.gene06667:CDS
AAATATGAACTTTACATTGA+TGG 0.334633 3.3:+76738669 None:intergenic
GGGTGTTCTGGATGAGGAAG+TGG 0.336037 3.3:-76737487 MS.gene06667:CDS
AACTATAAGAGGTGACTTCT+TGG 0.338003 3.3:+76738893 None:intergenic
TGGTGCAATAAGATTTGTTT+TGG 0.351364 3.3:-76737550 MS.gene06667:CDS
AAGCAATCAACAAGGGAATT+GGG 0.354037 3.3:-76736846 MS.gene06667:CDS
TGAGAGAGAGGGATGTTAGA+TGG 0.385714 3.3:-76739886 None:intergenic
GTGTTCTGGATGAGGAAGTG+GGG 0.404683 3.3:-76737485 MS.gene06667:CDS
GAGAGGGATGTTAGATGGTA+GGG 0.406436 3.3:-76739881 None:intergenic
TAGATGGTAGGGTGTCAAAT+GGG 0.407753 3.3:-76739870 MS.gene06667:CDS
AGAGAGGGATGTTAGATGGT+AGG 0.433136 3.3:-76739882 None:intergenic
AACCATTTAGCAACTATAAG+AGG 0.435947 3.3:+76738882 None:intergenic
GGTGTTCTGGATGAGGAAGT+GGG 0.436303 3.3:-76737486 MS.gene06667:CDS
GTCCTGGTCTTACATCTCCT+GGG 0.439119 3.3:-76737509 MS.gene06667:CDS
TCCAACACTGGTTCAAGTCC+TGG 0.460743 3.3:+76738927 None:intergenic
ACTATAAGAGGTGACTTCTT+GGG 0.475825 3.3:+76738894 None:intergenic
AAACAGCATGCCCTTGCCAT+TGG 0.482054 3.3:-76737324 MS.gene06667:CDS
TTTCTCATTTCAGGCCATCA+TGG 0.485619 3.3:-76737355 MS.gene06667:intron
TTAGATGGTAGGGTGTCAAA+TGG 0.487869 3.3:-76739871 MS.gene06667:CDS
TAGTCAGAACCATCTCAATC+TGG 0.488658 3.3:-76738762 MS.gene06667:CDS
TGTTCTGGATGAGGAAGTGG+GGG 0.494533 3.3:-76737484 MS.gene06667:CDS
AGTCGCAAGGTAGGCATGTA+CGG 0.512614 3.3:+76738695 None:intergenic
AACTTGCATTATCTCAATGA+TGG 0.525811 3.3:-76736817 MS.gene06667:CDS
ATTACTAAACTGCAGTATCC+AGG 0.527390 3.3:-76738945 MS.gene06667:intron
GAACCATCTCAATCTGGTTG+TGG 0.552638 3.3:-76738756 MS.gene06667:CDS
GGTGCAAACATAATGTGTCC+TGG 0.560571 3.3:-76737525 MS.gene06667:CDS
TCCTGGTCTTACATCTCCTG+GGG 0.566559 3.3:-76737508 MS.gene06667:CDS
TCCAGGACTTGAACCAGTGT+TGG 0.569000 3.3:-76738928 MS.gene06667:CDS
TCTCAATGATGGTCTTTGGA+AGG 0.575361 3.3:-76736806 MS.gene06667:intron
AGCAATCAACAAGGGAATTG+GGG 0.580148 3.3:-76736845 MS.gene06667:CDS
ACGTCAAAGTATTGCAGATG+AGG 0.585598 3.3:-76739209 MS.gene06667:intron
TGATGGAGAAGTCGCAAGGT+AGG 0.596779 3.3:+76738686 None:intergenic
TTTCAGGCCATCATGGCTGA+AGG 0.607923 3.3:-76737348 MS.gene06667:intron
TCACCACAACCAGATTGAGA+TGG 0.615908 3.3:+76738753 None:intergenic
ACATTGATGGAGAAGTCGCA+AGG 0.629589 3.3:+76738682 None:intergenic
AGATGGTAGGGTGTCAAATG+GGG 0.644288 3.3:-76739869 MS.gene06667:CDS
TTCAGAAAAGCAATCAACAA+GGG 0.652972 3.3:-76736853 MS.gene06667:intron
GGAAGTATATCATCCAACAC+TGG 0.658326 3.3:+76738915 None:intergenic
TTTCAGAAAAGCAATCAACA+AGG 0.684568 3.3:-76736854 MS.gene06667:intron
CCTGGTCTTACATCTCCTGG+GGG 0.695202 3.3:-76737507 MS.gene06667:CDS
AAACAAATCTTATTGCACCA+CGG 0.718835 3.3:+76737553 None:intergenic
AAGAAATTACAAGTTGACCG+TGG 0.749697 3.3:-76737570 MS.gene06667:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTAATTTATTTTT+CGG - chr3.3:76736899-76736918 MS.gene06667:intron 0.0%
!! AAATGATAATTGATAAATTA+CGG + chr3.3:76738698-76738717 None:intergenic 10.0%
!! TATAATATATTAAAAATCAG+CGG + chr3.3:76739826-76739845 None:intergenic 10.0%
!!! GAAATTAAATCATTTTTTTA+GGG + chr3.3:76736972-76736991 None:intergenic 10.0%
!! AAAACTAATATAGAAGAAAA+TGG + chr3.3:76736876-76736895 None:intergenic 15.0%
!! AGAATAAAATAAAGATTGTT+AGG + chr3.3:76739850-76739869 None:intergenic 15.0%
!! CATATATTATCTTGATTAAA+AGG + chr3.3:76738491-76738510 None:intergenic 15.0%
!!! ATTTTATTCTATATTGTAGA+TGG - chr3.3:76739860-76739879 MS.gene06667:CDS 15.0%
!!! CGAAATTAAATCATTTTTTT+AGG + chr3.3:76736973-76736992 None:intergenic 15.0%
!! AAATAAGTATACATACATAG+TGG - chr3.3:76739692-76739711 MS.gene06667:intron 20.0%
!! AAATATGAACTTTACATTGA+TGG + chr3.3:76737767-76737786 None:intergenic 20.0%
!! AATAAAAAAGATGCATAGTT+TGG + chr3.3:76737425-76737444 None:intergenic 20.0%
!! AATGATATTAAAGTTAGCAA+AGG - chr3.3:76736648-76736667 MS.gene06667:intron 20.0%
!! ACCAACACAAAAAAAAAAAA+AGG + chr3.3:76737258-76737277 None:intergenic 20.0%
!! ATGCATATATAAAGTAAAAG+AGG + chr3.3:76738157-76738176 None:intergenic 20.0%
!! CATATATTATCTGGATTAAA+AGG + chr3.3:76738452-76738471 None:intergenic 20.0%
!! CCATTAAAATTTATACTACA+TGG + chr3.3:76739438-76739457 None:intergenic 20.0%
!! TAATATGTACATGAATACAA+AGG + chr3.3:76739673-76739692 None:intergenic 20.0%
!! TATGGATATAAACTACTTAT+AGG - chr3.3:76737884-76737903 MS.gene06667:intron 20.0%
!! TGTAATTTCTTCATTATATC+TGG + chr3.3:76738854-76738873 None:intergenic 20.0%
!! TTGGATAGTATAACTTAATT+GGG - chr3.3:76739789-76739808 MS.gene06667:intron 20.0%
!! TTTGGATAGTATAACTTAAT+TGG - chr3.3:76739788-76739807 MS.gene06667:intron 20.0%
!! TTTGTAATATTCTTTCATCT+GGG - chr3.3:76737805-76737824 MS.gene06667:intron 20.0%
!!! AAATCATTTTTTTAGGGTTT+AGG + chr3.3:76736966-76736985 None:intergenic 20.0%
!!! AATCATTTTTTTAGGGTTTA+GGG + chr3.3:76736965-76736984 None:intergenic 20.0%
!!! CCATGTAGTATAAATTTTAA+TGG - chr3.3:76739435-76739454 MS.gene06667:intron 20.0%
!!! CTTTTGTTTATTTGGAATTT+TGG - chr3.3:76739770-76739789 MS.gene06667:intron 20.0%
!!! TCTTATCTCTTTTGTTTATT+TGG - chr3.3:76739762-76739781 MS.gene06667:intron 20.0%
!!! TTTTTTGAGTAATGCATATA+TGG - chr3.3:76737866-76737885 MS.gene06667:intron 20.0%
! AAACAATCTACAAAACACAA+TGG + chr3.3:76738995-76739014 None:intergenic 25.0%
! AGAAGAACACATATATTATC+TGG + chr3.3:76738461-76738480 None:intergenic 25.0%
! AGATATCACTAATTGTATGT+GGG - chr3.3:76737291-76737310 MS.gene06667:intron 25.0%
! ATACTGCAGTTTAGTAATTT+AGG + chr3.3:76737486-76737505 None:intergenic 25.0%
! ATTAAAACTAGCAAAACTCT+TGG + chr3.3:76738299-76738318 None:intergenic 25.0%
! CATACAATTAGTGATATCTA+AGG + chr3.3:76737290-76737309 None:intergenic 25.0%
! GTTTGTAATATTCTTTCATC+TGG - chr3.3:76737804-76737823 MS.gene06667:intron 25.0%
! TAATGAACAATTGTGTAAAG+AGG + chr3.3:76737031-76737050 None:intergenic 25.0%
! TAGAGATTAGAGATAAGATA+TGG - chr3.3:76739495-76739514 MS.gene06667:intron 25.0%
! TAGATATCACTAATTGTATG+TGG - chr3.3:76737290-76737309 MS.gene06667:intron 25.0%
! TAGGTTAATTAATAGTCACA+TGG + chr3.3:76737467-76737486 None:intergenic 25.0%
! TATCTTGATTAAAAGGTTTG+AGG + chr3.3:76738484-76738503 None:intergenic 25.0%
! TATGTGTTGAAGATATTATC+TGG + chr3.3:76738206-76738225 None:intergenic 25.0%
! TGAGAAAAATACATGATATG+AGG + chr3.3:76739065-76739084 None:intergenic 25.0%
! TTCTGTATTTGAACCATTAT+GGG + chr3.3:76736674-76736693 None:intergenic 25.0%
! TTTCTGTATTTGAACCATTA+TGG + chr3.3:76736675-76736694 None:intergenic 25.0%
!! GAATACATGATAATGTTGAT+TGG - chr3.3:76738024-76738043 MS.gene06667:intron 25.0%
!! TCATGTATTTTTCTCATTTC+AGG - chr3.3:76739069-76739088 MS.gene06667:intron 25.0%
!! TCGTGATTCTGATAATTTTA+TGG - chr3.3:76737375-76737394 MS.gene06667:intron 25.0%
!! TGACATTTTTGTAAATCCAA+TGG + chr3.3:76739128-76739147 None:intergenic 25.0%
!!! AAGAGGTACTAAAAAAAAAG+TGG + chr3.3:76737014-76737033 None:intergenic 25.0%
!!! AGAGGTACTAAAAAAAAAGT+GGG + chr3.3:76737013-76737032 None:intergenic 25.0%
!!! CTTCCTACATTTTAAAAAAG+AGG + chr3.3:76738671-76738690 None:intergenic 25.0%
!!! GCCTTTTTTTTTTTTTGTGT+TGG - chr3.3:76737254-76737273 MS.gene06667:intron 25.0%
!!! TGTACTTTTTGAACATCTTA+TGG + chr3.3:76736813-76736832 None:intergenic 25.0%
AAACAAATCTTATTGCACCA+CGG + chr3.3:76738883-76738902 None:intergenic 30.0%
AAAGAGGCTCTTCATTTATT+TGG + chr3.3:76739230-76739249 None:intergenic 30.0%
AACCATTTAGCAACTATAAG+AGG + chr3.3:76737554-76737573 None:intergenic 30.0%
AACTTGCATTATCTCAATGA+TGG - chr3.3:76739616-76739635 MS.gene06667:intron 30.0%
AAGAGGCTCTTCATTTATTT+GGG + chr3.3:76739229-76739248 None:intergenic 30.0%
AATAAAACATAGGGCTAATG+TGG - chr3.3:76739469-76739488 MS.gene06667:intron 30.0%
ACATATGGTGAATACTGAAT+AGG - chr3.3:76737929-76737948 MS.gene06667:intron 30.0%
ACATTTAGATAACCTTGAGA+CGG - chr3.3:76738537-76738556 MS.gene06667:intron 30.0%
ACTAAAAAAAAAGTGGGCAT+TGG + chr3.3:76737007-76737026 None:intergenic 30.0%
ACTACCACTCAATAATAAGA+CGG + chr3.3:76738251-76738270 None:intergenic 30.0%
AGAGAAAAACAATAGCTGTT+TGG - chr3.3:76737976-76737995 MS.gene06667:intron 30.0%
ATTATCTCAATGATGGTCTT+TGG - chr3.3:76739623-76739642 MS.gene06667:intron 30.0%
CTCTATACTAGAAAGTTTCT+CGG + chr3.3:76738005-76738024 None:intergenic 30.0%
GAGAGAACATAAAGATCATA+CGG - chr3.3:76738325-76738344 MS.gene06667:intron 30.0%
TAAAACATGGAAGAGTTTCT+AGG - chr3.3:76738747-76738766 MS.gene06667:CDS 30.0%
TAATATTCTTTCATCTGGGA+GGG - chr3.3:76737809-76737828 MS.gene06667:intron 30.0%
TAATGACCAAAGTGAGAAAA+TGG + chr3.3:76738634-76738653 None:intergenic 30.0%
TATACTACATGGCAATAAAG+TGG + chr3.3:76739427-76739446 None:intergenic 30.0%
TATCTGGATTAAAAGGTTTG+AGG + chr3.3:76738445-76738464 None:intergenic 30.0%
TATTAAAAATCAGCGGTAAC+TGG + chr3.3:76739819-76739838 None:intergenic 30.0%
TCACGAACACTAAAAAACAA+AGG + chr3.3:76737714-76737733 None:intergenic 30.0%
TCTCAAGGTTATCTAAATGT+GGG + chr3.3:76738537-76738556 None:intergenic 30.0%
TTCAGAAAAGCAATCAACAA+GGG - chr3.3:76739580-76739599 MS.gene06667:intron 30.0%
TTGAAGCTTAAACAGAATCA+CGG + chr3.3:76737324-76737343 None:intergenic 30.0%
TTGGTGAATTAATGCATGTT+TGG + chr3.3:76737406-76737425 None:intergenic 30.0%
TTTAAAAAAGAGGACGAATG+CGG + chr3.3:76738661-76738680 None:intergenic 30.0%
TTTCAGAAAAGCAATCAACA+AGG - chr3.3:76739579-76739598 MS.gene06667:intron 30.0%
! AAACAAACCATTCTAGGAAA+TGG - chr3.3:76738571-76738590 MS.gene06667:intron 30.0%
! AAAGTTTTCTCAGTTCTCAA+AGG + chr3.3:76738399-76738418 None:intergenic 30.0%
! AAGGTTTGAGGAGTATAAAT+AGG + chr3.3:76738433-76738452 None:intergenic 30.0%
! ACATGATAATGTTGATTGGT+TGG - chr3.3:76738028-76738047 MS.gene06667:intron 30.0%
! AGGTTTGAGGAGTATAAATA+GGG + chr3.3:76738432-76738451 None:intergenic 30.0%
! GAAACTCTTCCATGTTTTAT+AGG + chr3.3:76738746-76738765 None:intergenic 30.0%
! TAAAGTGGAAAACTTGTTTG+TGG + chr3.3:76739412-76739431 None:intergenic 30.0%
! TTGTAGTTCTATTTGCTTTG+AGG - chr3.3:76737584-76737603 MS.gene06667:CDS 30.0%
! TTTCAGATTTTCATCTGAAG+AGG - chr3.3:76737158-76737177 MS.gene06667:intron 30.0%
! TTTTGTAAATCCAATGGCAA+GGG + chr3.3:76739122-76739141 None:intergenic 30.0%
! TTTTTGTAAATCCAATGGCA+AGG + chr3.3:76739123-76739142 None:intergenic 30.0%
!! TGGTGCAATAAGATTTGTTT+TGG - chr3.3:76738883-76738902 MS.gene06667:intron 30.0%
!!! CGTCCTCTTTTTTAAAATGT+AGG - chr3.3:76738665-76738684 MS.gene06667:intron 30.0%
!!! TAGCCCTATGTTTTATTTGA+GGG + chr3.3:76739466-76739485 None:intergenic 30.0%
!!! TGCAATAAGATTTGTTTTGG+CGG - chr3.3:76738886-76738905 MS.gene06667:CDS 30.0%
!!! TTAGCCCTATGTTTTATTTG+AGG + chr3.3:76739467-76739486 None:intergenic 30.0%
!!! TTGTTTTTTAGTGTTCGTGA+TGG - chr3.3:76737714-76737733 MS.gene06667:intron 30.0%
AAAGCAATCAACAAGGGAAT+TGG - chr3.3:76739586-76739605 MS.gene06667:intron 35.0%
AACTATAAGAGGTGACTTCT+TGG + chr3.3:76737543-76737562 None:intergenic 35.0%
AACTGTACTGTTCATACCAA+AGG - chr3.3:76738064-76738083 MS.gene06667:intron 35.0%
AAGAAGTTCAACTACTTTCG+TGG - chr3.3:76739556-76739575 MS.gene06667:intron 35.0%
AAGCAATCAACAAGGGAATT+GGG - chr3.3:76739587-76739606 MS.gene06667:intron 35.0%
AATATTCTTTCATCTGGGAG+GGG - chr3.3:76737810-76737829 MS.gene06667:intron 35.0%
ACTATAAGAGGTGACTTCTT+GGG + chr3.3:76737542-76737561 None:intergenic 35.0%
ACTGTACTGTTCATACCAAA+GGG - chr3.3:76738065-76738084 MS.gene06667:intron 35.0%
AGCAACATCAATGTTCTGAT+TGG - chr3.3:76738099-76738118 MS.gene06667:intron 35.0%
AGCTCCCTCAAATAAAACAT+AGG - chr3.3:76739459-76739478 MS.gene06667:intron 35.0%
ATTACTAAACTGCAGTATCC+AGG - chr3.3:76737488-76737507 MS.gene06667:CDS 35.0%
CAATCATCGAAACTGAAACT+AGG + chr3.3:76739525-76739544 None:intergenic 35.0%
CACCTCTTATAGTTGCTAAA+TGG - chr3.3:76737549-76737568 MS.gene06667:CDS 35.0%
CTCAAGGTTATCTAAATGTG+GGG + chr3.3:76738536-76738555 None:intergenic 35.0%
GCTCCCTCAAATAAAACATA+GGG - chr3.3:76739460-76739479 MS.gene06667:intron 35.0%
GGGTGCAATATTTGAAAAAC+AGG - chr3.3:76736584-76736603 MS.gene06667:intron 35.0%
GTAATATTCTTTCATCTGGG+AGG - chr3.3:76737808-76737827 MS.gene06667:intron 35.0%
GTCTCAAGGTTATCTAAATG+TGG + chr3.3:76738538-76738557 None:intergenic 35.0%
TCACTAATTGTATGTGGGTT+TGG - chr3.3:76737296-76737315 MS.gene06667:intron 35.0%
TTCACCATATGTGTTGAACA+CGG + chr3.3:76737921-76737940 None:intergenic 35.0%
! AAACCATTCTAGGAAATGGA+GGG - chr3.3:76738575-76738594 MS.gene06667:intron 35.0%
! AAGAAATTACAAGTTGACCG+TGG - chr3.3:76738863-76738882 MS.gene06667:intron 35.0%
! ATGTCAACCAGAGAGTATAA+TGG + chr3.3:76739271-76739290 None:intergenic 35.0%
! CCATGTTTTATAGGTGCTTT+TGG + chr3.3:76738737-76738756 None:intergenic 35.0%
! GGTTTGAGGAGTATAAATAG+GGG + chr3.3:76738431-76738450 None:intergenic 35.0%
! GTGCTTTTGGTCAAAGTATA+GGG + chr3.3:76738724-76738743 None:intergenic 35.0%
!! CCAAAAGCACCTATAAAACA+TGG - chr3.3:76738734-76738753 MS.gene06667:CDS 35.0%
!!! ATGTTGTTTTTGCCTAACCA+CGG - chr3.3:76737345-76737364 MS.gene06667:CDS 35.0%
!!! GCAATAAGATTTGTTTTGGC+GGG - chr3.3:76738887-76738906 MS.gene06667:CDS 35.0%
AACCACCAAGGCAATAACAA+TGG + chr3.3:76738611-76738630 None:intergenic 40.0%
AAGTTAGCAAAGGCCCATAA+TGG - chr3.3:76736658-76736677 MS.gene06667:intron 40.0%
AGAGATAAGAAAAGCCACGA+TGG + chr3.3:76739752-76739771 None:intergenic 40.0%
AGCAATCAACAAGGGAATTG+GGG - chr3.3:76739588-76739607 MS.gene06667:intron 40.0%
CAGGTGTAAGTAGAAAACGA+AGG - chr3.3:76736603-76736622 MS.gene06667:intron 40.0%
CCTCTTACCATTATACTCTC+TGG - chr3.3:76739261-76739280 MS.gene06667:CDS 40.0%
CTTTCTCTCAAGCATAGTGA+TGG - chr3.3:76738177-76738196 MS.gene06667:intron 40.0%
GTTCATACCAAAGGGCTATA+AGG - chr3.3:76738073-76738092 MS.gene06667:intron 40.0%
TAGTCAGAACCATCTCAATC+TGG - chr3.3:76737671-76737690 MS.gene06667:intron 40.0%
TATTTGATGTGCTACCATCG+TGG - chr3.3:76739735-76739754 MS.gene06667:intron 40.0%
TCTCAATGATGGTCTTTGGA+AGG - chr3.3:76739627-76739646 MS.gene06667:intron 40.0%
TGATCCGTGTTCAACACATA+TGG - chr3.3:76737914-76737933 MS.gene06667:intron 40.0%
TTAGATAACCTTGAGACGGA+GGG - chr3.3:76738541-76738560 MS.gene06667:intron 40.0%
TTCTCAGTTCTCAAAGGTTC+AGG + chr3.3:76738393-76738412 None:intergenic 40.0%
TTTAGATAACCTTGAGACGG+AGG - chr3.3:76738540-76738559 MS.gene06667:intron 40.0%
TTTCTCATTTCAGGCCATCA+TGG - chr3.3:76739078-76739097 MS.gene06667:intron 40.0%
! AACCATTCTAGGAAATGGAG+GGG - chr3.3:76738576-76738595 MS.gene06667:intron 40.0%
! AACTTGTTTGTGGAAGGAAG+TGG + chr3.3:76739402-76739421 None:intergenic 40.0%
! ACAAGCCATTGTTATTGCCT+TGG - chr3.3:76738603-76738622 MS.gene06667:intron 40.0%
! CAAACCATTCTAGGAAATGG+AGG - chr3.3:76738574-76738593 MS.gene06667:intron 40.0%
! CCAGAGAGTATAATGGTAAG+AGG + chr3.3:76739264-76739283 None:intergenic 40.0%
! CTTTTGGTCAAAGTATAGGG+AGG + chr3.3:76738721-76738740 None:intergenic 40.0%
! GGAAGTATATCATCCAACAC+TGG + chr3.3:76737521-76737540 None:intergenic 40.0%
! GGTGCTTTTGGTCAAAGTAT+AGG + chr3.3:76738725-76738744 None:intergenic 40.0%
! GGTTCTGACTACAAGAACAA+CGG + chr3.3:76737662-76737681 None:intergenic 40.0%
! GTGGAAAACTTGTTTGTGGA+AGG + chr3.3:76739408-76739427 None:intergenic 40.0%
! GTGGTTCCATTTTCTCACTT+TGG - chr3.3:76738625-76738644 MS.gene06667:intron 40.0%
! TAGATGGTAGGGTGTCAAAT+GGG - chr3.3:76736563-76736582 MS.gene06667:intron 40.0%
! TCTGCCGTCTTATTATTGAG+TGG - chr3.3:76738244-76738263 MS.gene06667:intron 40.0%
! TTAGATGGTAGGGTGTCAAA+TGG - chr3.3:76736562-76736581 MS.gene06667:intron 40.0%
!! ACGTCAAAGTATTGCAGATG+AGG - chr3.3:76737224-76737243 MS.gene06667:intron 40.0%
AAACACAATGGCAGTACCAC+AGG + chr3.3:76738983-76739002 None:intergenic 45.0%
ACATTGATGGAGAAGTCGCA+AGG + chr3.3:76737754-76737773 None:intergenic 45.0%
AGAGGTGGAGCTACATGTTT+AGG - chr3.3:76739365-76739384 MS.gene06667:intron 45.0%
CAGACATTATGCTCTGCAGT+TGG - chr3.3:76738778-76738797 MS.gene06667:intron 45.0%
GAACCATCTCAATCTGGTTG+TGG - chr3.3:76737677-76737696 MS.gene06667:intron 45.0%
GGGGGAAAACAAACCATTCT+AGG - chr3.3:76738565-76738584 MS.gene06667:intron 45.0%
GGTGCAAACATAATGTGTCC+TGG - chr3.3:76738908-76738927 MS.gene06667:CDS 45.0%
GTGAGAAAATGGAACCACCA+AGG + chr3.3:76738623-76738642 None:intergenic 45.0%
GTGGAGCTACATGTTTAGGT+GGG - chr3.3:76739369-76739388 MS.gene06667:intron 45.0%
TCACCACAACCAGATTGAGA+TGG + chr3.3:76737683-76737702 None:intergenic 45.0%
TGCTCAACCTTATAGCCCTT+TGG + chr3.3:76738083-76738102 None:intergenic 45.0%
TGGAGCTACATGTTTAGGTG+GGG - chr3.3:76739370-76739389 MS.gene06667:intron 45.0%
! ACCATTCTAGGAAATGGAGG+GGG - chr3.3:76738577-76738596 MS.gene06667:intron 45.0%
! AGAGGCAGAGTTTCTGAAAG+AGG + chr3.3:76739246-76739265 None:intergenic 45.0%
! AGATGGTAGGGTGTCAAATG+GGG - chr3.3:76736564-76736583 MS.gene06667:intron 45.0%
! AGCCATTGTTATTGCCTTGG+TGG - chr3.3:76738606-76738625 MS.gene06667:intron 45.0%
! CTGTTTTCCTTCAGCCATGA+TGG + chr3.3:76739095-76739114 None:intergenic 45.0%
!! CTTATGGTGCGTTGAGTTGA+AGG + chr3.3:76736797-76736816 None:intergenic 45.0%
!!! TTGTTTTTGCCTAACCACGG+TGG - chr3.3:76737348-76737367 MS.gene06667:intron 45.0%
AAACAGCATGCCCTTGCCAT+TGG - chr3.3:76739109-76739128 MS.gene06667:intron 50.0%
AATTGCACCATTGCTCGTGG+TGG - chr3.3:76736937-76736956 MS.gene06667:intron 50.0%
ACGCAACAGTGTAACTCTCG+AGG + chr3.3:76736701-76736720 None:intergenic 50.0%
AGCAATTGCACCATTGCTCG+TGG - chr3.3:76736934-76736953 MS.gene06667:intron 50.0%
AGTCGCAAGGTAGGCATGTA+CGG + chr3.3:76737741-76737760 None:intergenic 50.0%
ATAACCTTGAGACGGAGGGA+GGG - chr3.3:76738545-76738564 MS.gene06667:intron 50.0%
CAACCTCGTGCAATTAGAGG+TGG - chr3.3:76739350-76739369 MS.gene06667:intron 50.0%
CCACAACCTCGTGCAATTAG+AGG - chr3.3:76739347-76739366 MS.gene06667:intron 50.0%
CCTCTAATTGCACGAGGTTG+TGG + chr3.3:76739350-76739369 None:intergenic 50.0%
CGCAACAGTGTAACTCTCGA+GGG + chr3.3:76736700-76736719 None:intergenic 50.0%
GGAGCTACATGTTTAGGTGG+GGG - chr3.3:76739371-76739390 MS.gene06667:intron 50.0%
GGTGGAGCTACATGTTTAGG+TGG - chr3.3:76739368-76739387 MS.gene06667:intron 50.0%
TCCAGGACTTGAACCAGTGT+TGG - chr3.3:76737505-76737524 MS.gene06667:CDS 50.0%
TCCCCCTCCATTTCCTAGAA+TGG + chr3.3:76738581-76738600 None:intergenic 50.0%
TGATGGAGAAGTCGCAAGGT+AGG + chr3.3:76737750-76737769 None:intergenic 50.0%
TTTCAGGCCATCATGGCTGA+AGG - chr3.3:76739085-76739104 MS.gene06667:intron 50.0%
! GGTGTTCTGGATGAGGAAGT+GGG - chr3.3:76738947-76738966 MS.gene06667:intron 50.0%
! GTGTTCTGGATGAGGAAGTG+GGG - chr3.3:76738948-76738967 MS.gene06667:intron 50.0%
! TGTTCTGGATGAGGAAGTGG+GGG - chr3.3:76738949-76738968 MS.gene06667:intron 50.0%
!! GTCCTGGTCTTACATCTCCT+GGG - chr3.3:76738924-76738943 MS.gene06667:CDS 50.0%
!! TCCAACACTGGTTCAAGTCC+TGG + chr3.3:76737509-76737528 None:intergenic 50.0%
!! TCCTGGTCTTACATCTCCTG+GGG - chr3.3:76738925-76738944 MS.gene06667:CDS 50.0%
!! TGTCCTGGTCTTACATCTCC+TGG - chr3.3:76738923-76738942 MS.gene06667:CDS 50.0%
AGAATCACGATGAGCCACCG+TGG + chr3.3:76737365-76737384 None:intergenic 55.0%
GATAACCTTGAGACGGAGGG+AGG - chr3.3:76738544-76738563 MS.gene06667:intron 55.0%
GCTCCACCTCTAATTGCACG+AGG + chr3.3:76739356-76739375 None:intergenic 55.0%
TAACCTTGAGACGGAGGGAG+GGG - chr3.3:76738546-76738565 MS.gene06667:intron 55.0%
! GGGTGTTCTGGATGAGGAAG+TGG - chr3.3:76738946-76738965 MS.gene06667:intron 55.0%
! TAGGGTACCACCACGAGCAA+TGG + chr3.3:76736947-76736966 None:intergenic 55.0%
!! CCTGGTCTTACATCTCCTGG+GGG - chr3.3:76738926-76738945 MS.gene06667:CDS 55.0%
!! TACATCTCCTGGGGGTGTTC+TGG - chr3.3:76738934-76738953 MS.gene06667:intron 55.0%
AACCTTGAGACGGAGGGAGG+GGG - chr3.3:76738547-76738566 MS.gene06667:intron 60.0%
AGTGGGGGCAGAATGTCCTG+TGG - chr3.3:76738964-76738983 MS.gene06667:intron 60.0%
CACGATGAGCCACCGTGGTT+AGG + chr3.3:76737360-76737379 None:intergenic 60.0%
CCCCCAGGAGATGTAAGACC+AGG + chr3.3:76738929-76738948 None:intergenic 60.0%
TCCTCATCCAGAACACCCCC+AGG + chr3.3:76738944-76738963 None:intergenic 60.0%
!! TCCTGGGGGTGTTCTGGATG+AGG - chr3.3:76738940-76738959 MS.gene06667:intron 60.0%
TTCCCCCTCCCTCCGTCTCA+AGG + chr3.3:76738552-76738571 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 76736559 76739896 76736559 ID=MS.gene06667
chr3.3 mRNA 76736559 76739896 76736559 ID=MS.gene06667.t1;Parent=MS.gene06667
chr3.3 exon 76739850 76739896 76739850 ID=MS.gene06667.t1.exon1;Parent=MS.gene06667.t1
chr3.3 CDS 76739850 76739896 76739850 ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
chr3.3 exon 76739210 76739291 76739210 ID=MS.gene06667.t1.exon2;Parent=MS.gene06667.t1
chr3.3 CDS 76739210 76739291 76739210 ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
chr3.3 exon 76738885 76738952 76738885 ID=MS.gene06667.t1.exon3;Parent=MS.gene06667.t1
chr3.3 CDS 76738885 76738952 76738885 ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
chr3.3 exon 76738684 76738781 76738684 ID=MS.gene06667.t1.exon4;Parent=MS.gene06667.t1
chr3.3 CDS 76738684 76738781 76738684 ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
chr3.3 exon 76737470 76737606 76737470 ID=MS.gene06667.t1.exon5;Parent=MS.gene06667.t1
chr3.3 CDS 76737470 76737606 76737470 ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
chr3.3 exon 76737297 76737364 76737297 ID=MS.gene06667.t1.exon6;Parent=MS.gene06667.t1
chr3.3 CDS 76737297 76737364 76737297 ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
chr3.3 exon 76736807 76736870 76736807 ID=MS.gene06667.t1.exon7;Parent=MS.gene06667.t1
chr3.3 CDS 76736807 76736870 76736807 ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
chr3.3 exon 76736559 76736576 76736559 ID=MS.gene06667.t1.exon8;Parent=MS.gene06667.t1
chr3.3 CDS 76736559 76736576 76736559 ID=cds.MS.gene06667.t1;Parent=MS.gene06667.t1
Gene Sequence

>MS.gene06667

ATGTTAGATGGTAGGGTGTCAAATGGGGTGCAATATTTGAAAAACAGGTGTAAGTAGAAAACGAAGGCGTAAATGCATAATGTATTGACAATGATATTAAAGTTAGCAAAGGCCCATAATGGTTCAAATACAGAAACACCCTCGAGAGTTACACTGTTGCGTTTTGCATCTCTTTCTCTCTCTACAATACAATTTCAGACACAGACACAGATTCACTTTCATCTCAAAATCATCACCTTCAACTCAACGCACCATAAGATGTTCAAAAAGTACACTCTCTCACTCTACTCTCTGAATTCTAATTCATTCATTCACCATTTTCTTCTATATTAGTTTTTTCATTTTATTTAATTTATTTTTCGGAGTTATTCTGTCAGCAATTGCACCATTGCTCGTGGTGGTACCCTAAACCCTAAAAAAATGATTTAATTTCGTATTGAAATTTCCAATGCCCACTTTTTTTTTAGTACCTCTTTACACAATTGTTCATTAATTTATTTTATGATGTTGTTGCTTCAATCTACAATTGTTTATTGAAATTATGATTTTTCAATGCGTATCTTTAGATTCAAATGTCAAAAAAAAATTTTTTTTTTGCTTTTCAGATTTTCATCTGAAGAGGTGTCTGCACAGAATCAAGTGAAAGCATCTGTTCAAAGAAGAATACGTCAAAGTATTGCAGATGAGGTGATGTCGCCTTTTTTTTTTTTTGTGTTGGTTTTTGTTGTCCTTAGATATCACTAATTGTATGTGGGTTTGGTGCCGTGATTCTGTTTAAGCTTCAAAATGTTGTTTTTGCCTAACCACGGTGGCTCATCGTGATTCTGATAATTTTATGGTCAATCCAAACATGCATTAATTCACCAAACTATGCATCTTTTTTATTGCACGTGAGTTTGTTTTAACCATGTGACTATTAATTAACCTAAATTACTAAACTGCAGTATCCAGGACTTGAACCAGTGTTGGATGATATACTTCCCAAGAAGTCACCTCTTATAGTTGCTAAATGGTTCGTTTGTGAATTGTAGTTCTATTTGCTTTGAGGTTTTCGACGCATCATAAGTTTTATAGCTTCTAACTAGTAGTATTTGTTTTTTCCGTTGTTCTTGTAGTCAGAACCATCTCAATCTGGTTGTGGTGAACAATGTGCCTTTGTTTTTTAGTGTTCGTGATGGTCCGTACATGCCTACCTTGCGACTTCTCCATCAATGTAAAGTTCATATTTCTTGCAATTTTTAACTTGTTTGTAATATTCTTTCATCTGGGAGGGGAACAAGTCATCAGTAATGAATATTTCACTCTGTTTTTTTGAGTAATGCATATATGGATATAAACTACTTATAGGACGCAGCTGATCCGTGTTCAACACATATGGTGAATACTGAATAGGATGTTGAAAATTGAAATGTATTATAGAGAAAAACAATAGCTGTTTGGCTACCGAGAAACTTTCTAGTATAGAGAATACATGATAATGTTGATTGGTTGGATTCTCTTTCTTTAACTGTACTGTTCATACCAAAGGGCTATAAGGTTGAGCAACATCAATGTTCTGATTGGTATAATTTTCATGACACAGTGAATTAAGCTAGCCTCTTTTACTTTATATATGCATCTTTCTCTCAAGCATAGTGATGGAATCCAGATAATATCTTCAACACATAGTGAAATATTAAACTCATTCTGCCGTCTTATTATTGAGTGGTAGTATCTATAGAATGTTTGCAATTTAATCCAAGAGTTTTGCTAGTTTTAATGAACAAGAGAGAACATAAAGATCATACGGTTCTTCATCTATTTGTGATCTTATATTTATTTGTTAGATTCTCCTGAACCTTTGAGAACTGAGAAAACTTTCTTGACTTGCCCCTATTTATACTCCTCAAACCTTTTAATCCAGATAATATATGTGTTCTTCTCCTCAAACCTTTTAATCAAGATAATATATGTGTTCTTCTGACAGTATTTTTACCCCACATTTAGATAACCTTGAGACGGAGGGAGGGGGAAAACAAACCATTCTAGGAAATGGAGGGGGAAAACAAGCCATTGTTATTGCCTTGGTGGTTCCATTTTCTCACTTTGGTCATTACAATCCGCATTCGTCCTCTTTTTTAAAATGTAGGAAGTCGTCCGTAATTTATCAATTATCATTTCCTCCCTATACTTTGACCAAAAGCACCTATAAAACATGGAAGAGTTTCTAGGCTCACACACAGACATTATGCTCTGCAGTTGGTCTTTCTTATATTGCTTGTGAACTGTACTACTGTTTTTTATTTTTCAGATCCAGATATAATGAAGAAATTACAAGTTGACCGTGGTGCAATAAGATTTGTTTTGGCGGGTGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTTCTGGATGAGGAAGTGGGGGCAGAATGTCCTGTGGTACTGCCATTGTGTTTTGTAGATTGTTTGTAATACACAAAAAGTGAGCATTTTCTAGTGAATTTATATTAACATTCCTCATATCATGTATTTTTCTCATTTCAGGCCATCATGGCTGAAGGAAAACAGCATGCCCTTGCCATTGGATTTACAAAAATGTCAGCAAAAGACATGTAAGAAAATTGTTTCATCGCATGTTTTGTCTACATGTCTGTTGAATGAAATAAATATGAATGTTTTCCCAAATAAATGAAGAGCCTCTTTCAGAAACTCTGCCTCTTACCATTATACTCTCTGGTTGACATTCGTGAACATAGTAAAATTAGCATAAATAGCTTTTTATGTCATATTTCATTATCAGCCACAACCTCGTGCAATTAGAGGTGGAGCTACATGTTTAGGTGGGGGTGCAACCACTTCCTTCCACAAACAAGTTTTCCACTTTATTGCCATGTAGTATAAATTTTAATGGAAGCTCCCTCAAATAAAACATAGGGCTAATGTGGAAATAGAGATTAGAGATAAGATATGGCTAGCCTAGTTTCAGTTTCGATGATTGATTGTGCACTCAAGAAGTTCAACTACTTTCGTGGTTTCAGAAAAGCAATCAACAAGGGAATTGGGGTCGACAACTTGCATTATCTCAATGATGGTCTTTGGAAGGTATAAATTGATATATGATCTCCTTTGTATTCATGTACATATTAAATAAGTATACATACATAGTGGACATATTTATGTTATTCACTTATTTGATGTGCTACCATCGTGGCTTTTCTTATCTCTTTTGTTTATTTGGAATTTTGGATAGTATAACTTAATTGGGCTTACCAGTTACCGCTGATTTTTAATATATTATAGCCTAACAATCTTTATTTTATTCTATATTGTAGATGGAGCGATTTGATTGA

Protein sequence

>MS.gene06667.t1

MLDGRVSNGVQYLKNRFSSEEVSAQNQVKASVQRRIRQSIADEYPGLEPVLDDILPKKSPLIVAKCQNHLNLVVVNNVPLFFSVRDGPYMPTLRLLHQYPDIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGVLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKMERFD