AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037324

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037324.t1 MTR_1g114000 99.365 315 0 1 1 315 1 313 0.0 616
MS.gene037324.t1 MTR_6g047580 97.510 241 6 0 75 315 69 309 2.40e-175 488
MS.gene037324.t1 MTR_6g047580 93.985 266 16 0 50 315 12 277 6.08e-173 480
MS.gene037324.t1 MTR_6g047580 97.826 184 4 0 75 258 69 252 1.23e-129 370
MS.gene037324.t1 MTR_6g047580 84.293 191 28 1 75 265 69 257 1.06e-112 327
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037324.t1 AT4G25630 90.984 244 22 0 71 314 74 317 9.87e-168 469
MS.gene037324.t1 AT5G52470 90.083 242 24 0 71 312 63 304 2.68e-165 462
MS.gene037324.t1 AT5G52490 71.074 242 70 0 69 310 51 292 2.40e-128 368
MS.gene037324.t1 AT5G52470 93.902 164 10 0 71 234 63 226 3.16e-111 324

Find 111 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATACCCTCATGTCTA+TGG 0.205671 1.1:+80195323 None:intergenic
GGAGGTGGGAGAGGTGGTTT+TGG 0.245696 1.1:-80195487 MS.gene037324:CDS
TGTCTAGCATCTTCAATAAT+TGG 0.265009 1.1:+80194484 None:intergenic
CTTTACCTAGGAGCTGCTTC+TGG 0.296675 1.1:-80194727 MS.gene037324:CDS
TATAACATTAGTACGCTTCT+TGG 0.324454 1.1:+80194507 None:intergenic
CTAAGACAGAGTATAGAATT+TGG 0.324854 1.1:-80194909 MS.gene037324:CDS
GGAGGAAGGGGTGGTGATAG+AGG 0.351363 1.1:-80195517 MS.gene037324:CDS
TGGGCGTGACTTGGTCAATA+TGG 0.352165 1.1:-80194530 MS.gene037324:CDS
TCAAGAGTCACTTGCTCCAT+TGG 0.352395 1.1:+80192942 None:intergenic
GGCCGTGGTGGTTCTGGTGG+AGG 0.363670 1.1:-80195547 MS.gene037324:CDS
TGTACAGGCCGTGGTGGTTC+TGG 0.364877 1.1:-80195553 MS.gene037324:intron
GGAGGCCGTGGTGGCGGAAG+AGG 0.374341 1.1:-80195385 MS.gene037324:CDS
GGAGGTAGAGGAGGTGGGAG+AGG 0.378171 1.1:-80195496 MS.gene037324:CDS
GATAGAGGAGGTAGAGGAGG+TGG 0.391157 1.1:-80195502 MS.gene037324:CDS
CGGAAGAGGTGGTGGAATGA+AGG 0.392714 1.1:-80195371 MS.gene037324:CDS
AGGGACCATGCTTGTGTTGT+TGG 0.394797 1.1:-80192909 MS.gene037324:CDS
GTCACTAAGAATCTTGTTCC+TGG 0.395090 1.1:-80195274 MS.gene037324:CDS
GGCAGAGGAGGACGTGGAGG+AGG 0.399351 1.1:-80195403 MS.gene037324:CDS
TGATGTTGCTCAGCCTGATC+AGG 0.400610 1.1:-80194413 MS.gene037324:intron
AGAGGTGGCGGTAGAGGCGG+AGG 0.402146 1.1:-80195427 MS.gene037324:CDS
GGAGGGTTCAGAGGAGGAAG+GGG 0.404742 1.1:-80195529 MS.gene037324:CDS
CGTGGAGGAGGCCGTGGTGG+CGG 0.406160 1.1:-80195391 MS.gene037324:CDS
GGTAGAGGCGGAGGAGGCAG+AGG 0.408492 1.1:-80195418 MS.gene037324:CDS
GGTGGCGGTAGAGGCGGAGG+AGG 0.421527 1.1:-80195424 MS.gene037324:CDS
GGGTTCAGAGGAGGAAGGGG+TGG 0.421936 1.1:-80195526 MS.gene037324:CDS
ACACTTTGTTATTTCTATCA+AGG 0.422492 1.1:-80193369 MS.gene037324:intron
TTGGTGGTGTCGACAATATA+TGG 0.424660 1.1:-80194852 MS.gene037324:CDS
GGAGGACGTGGAGGAGGCCG+TGG 0.430468 1.1:-80195397 MS.gene037324:CDS
AAATTAAACCACACCTGATC+AGG 0.438185 1.1:+80194400 None:intergenic
GGAGGACGAGGAGGAGATAG+AGG 0.440185 1.1:-80195466 MS.gene037324:CDS
GGAGGAGGCAGAGGAGGACG+TGG 0.443901 1.1:-80195409 MS.gene037324:CDS
AACTGTGGAATCAATACAAT+TGG 0.448320 1.1:+80193022 None:intergenic
CGTGTTCTGTTACCTCGAAC+AGG 0.448367 1.1:+80195732 None:intergenic
GCCAACCAACATTCTGTACT+TGG 0.454773 1.1:+80194456 None:intergenic
CCATCGAAGTGGGCGTGACT+TGG 0.458744 1.1:-80194539 MS.gene037324:CDS
ATAGAGGAGGTAGAGGAGGT+GGG 0.464408 1.1:-80195501 MS.gene037324:CDS
CGTGGTGGCGGAAGAGGTGG+TGG 0.465952 1.1:-80195379 MS.gene037324:CDS
GCTAGAGGTGGCGGTAGAGG+CGG 0.468529 1.1:-80195430 MS.gene037324:CDS
AAGGCTAGAGGTGGCGGTAG+AGG 0.468910 1.1:-80195433 MS.gene037324:CDS
TCTCATGTGTCTGATATTGT+TGG 0.470006 1.1:-80194694 MS.gene037324:CDS
AGATAGAGGTACCCCTTTCA+AGG 0.470760 1.1:-80195452 MS.gene037324:CDS
AAGTTGGCAGCTGCTGTCCT+TGG 0.472296 1.1:-80194871 MS.gene037324:CDS
GCCGTGGTGGTTCTGGTGGA+GGG 0.473475 1.1:-80195546 MS.gene037324:CDS
GGTAGAGGAGGTGGGAGAGG+TGG 0.474660 1.1:-80195493 MS.gene037324:CDS
CGCCACCTCTAGCCTTGAAA+GGG 0.477576 1.1:+80195440 None:intergenic
GAAAATACCCTCATGTCTAT+GGG 0.477789 1.1:+80195324 None:intergenic
CCAAGTCACGCCCACTTCGA+TGG 0.482871 1.1:+80194539 None:intergenic
AGAGGCGGAGGAGGCAGAGG+AGG 0.484426 1.1:-80195415 MS.gene037324:CDS
GGTGGTGATAGAGGAGGTAG+AGG 0.485873 1.1:-80195508 MS.gene037324:CDS
GGCCGTGGTGGCGGAAGAGG+TGG 0.485933 1.1:-80195382 MS.gene037324:CDS
GGAAGAGGTGGTGGAATGAA+GGG 0.492329 1.1:-80195370 MS.gene037324:CDS
CAAGCATGGTCCCTCTCAAA+TGG 0.492656 1.1:+80192918 None:intergenic
GACCATGCTTGTGTTGTTGG+TGG 0.497588 1.1:-80192906 MS.gene037324:CDS
TGAGAAGAGGGTTACCGTGC+AGG 0.499140 1.1:-80195236 MS.gene037324:intron
ACCAACATTCTGTACTTGGC+GGG 0.501411 1.1:+80194460 None:intergenic
GCGCTGAATACTGCCTCAGC+TGG 0.502016 1.1:+80192999 None:intergenic
GCTTCATATTATCTCAAAGC+TGG 0.503141 1.1:-80193395 MS.gene037324:CDS
GGTGATAGAGGAGGTAGAGG+AGG 0.504276 1.1:-80195505 MS.gene037324:CDS
CAGAAGCAGCTCCTAGGTAA+AGG 0.506248 1.1:+80194728 None:intergenic
CTCAAAATATAGAGGCTACT+CGG 0.506705 1.1:+80192854 None:intergenic
CCGCCACCTCTAGCCTTGAA+AGG 0.514108 1.1:+80195439 None:intergenic
TTGGCAGCTGCTGTCCTTGG+TGG 0.517332 1.1:-80194868 MS.gene037324:CDS
AGCTGATCAATTTAAGCCAA+TGG 0.520445 1.1:-80192958 MS.gene037324:CDS
TTGTTCCAGAAGCAGCTCCT+AGG 0.523899 1.1:+80194722 None:intergenic
TCATTGTAAACAGCTTCTCC+AGG 0.524882 1.1:+80195256 None:intergenic
AACCAACATTCTGTACTTGG+CGG 0.526725 1.1:+80194459 None:intergenic
GGAGGCAGAGGAGGACGTGG+AGG 0.526880 1.1:-80195406 MS.gene037324:CDS
TGGAATGAAGGGAGGAAGCA+AGG 0.532988 1.1:-80195359 MS.gene037324:CDS
ACAATGGCTCCTCCTGTTCG+AGG 0.533054 1.1:-80195744 MS.gene037324:intron
TGGAGGGTTCAGAGGAGGAA+GGG 0.537472 1.1:-80195530 MS.gene037324:CDS
GAACCCTTTCCGTTCTAAGT+TGG 0.539930 1.1:-80194887 MS.gene037324:CDS
GTACAGAATGTTGGTTGGCA+TGG 0.545696 1.1:-80194452 MS.gene037324:CDS
CCTTTCAAGGCTAGAGGTGG+CGG 0.550070 1.1:-80195439 MS.gene037324:CDS
TACTGCCTCAGCTGGAACTG+TGG 0.556438 1.1:+80193007 None:intergenic
CTGCCAACTTAGAACGGAAA+GGG 0.557631 1.1:+80194884 None:intergenic
AGGTAAAGGACTTTAGCGCC+AGG 0.557851 1.1:+80194742 None:intergenic
CAAGTCACGCCCACTTCGAT+GGG 0.558873 1.1:+80194540 None:intergenic
ACAGGCCGTGGTGGTTCTGG+TGG 0.566444 1.1:-80195550 MS.gene037324:intron
GACTCTTGAACCATTTGAGA+GGG 0.572197 1.1:-80192928 MS.gene037324:CDS
GTGGAGGGTTCAGAGGAGGA+AGG 0.574068 1.1:-80195531 MS.gene037324:CDS
GGTTCTGGTGGAGGGTTCAG+AGG 0.575244 1.1:-80195538 MS.gene037324:CDS
AGAGGTGGTGGAATGAAGGG+AGG 0.576093 1.1:-80195367 MS.gene037324:CDS
GGACGTGGAGGAGGCCGTGG+TGG 0.585474 1.1:-80195394 MS.gene037324:CDS
CAGCAGCTGCCAACTTAGAA+CGG 0.593341 1.1:+80194878 None:intergenic
TCTGGTGGAGGGTTCAGAGG+AGG 0.598909 1.1:-80195535 MS.gene037324:CDS
GGAAGGGGTGGTGATAGAGG+AGG 0.599693 1.1:-80195514 MS.gene037324:CDS
AAGCTGTTTACAATGAGAAG+AGG 0.601232 1.1:-80195249 MS.gene037324:CDS
AGCTGTTTACAATGAGAAGA+GGG 0.603845 1.1:-80195248 MS.gene037324:CDS
GTTGAACCCCATAGACATGA+GGG 0.606951 1.1:-80195331 MS.gene037324:CDS
TGATTCCACAGTTCCAGCTG+AGG 0.607935 1.1:-80193012 MS.gene037324:CDS
TGACTCTTGAACCATTTGAG+AGG 0.609035 1.1:-80192929 MS.gene037324:CDS
GCCAAGTACAGAATGTTGGT+TGG 0.614552 1.1:-80194457 MS.gene037324:CDS
TCCCGCCAAGTACAGAATGT+TGG 0.621000 1.1:-80194461 MS.gene037324:CDS
TGAATTTGTACAGGCCGTGG+TGG 0.621278 1.1:-80195559 MS.gene037324:intron
TGTTGAACCCCATAGACATG+AGG 0.622170 1.1:-80195332 MS.gene037324:CDS
TAGAATTCTCCCATCGAAGT+GGG 0.624110 1.1:-80194549 MS.gene037324:CDS
TCATATTATCTCAAAGCTGG+AGG 0.625407 1.1:-80193392 MS.gene037324:CDS
ACCCCTTTCAAGGCTAGAGG+TGG 0.626063 1.1:-80195442 MS.gene037324:CDS
GCTGCCAACTTAGAACGGAA+AGG 0.630241 1.1:+80194883 None:intergenic
CACCACCTCTTCCGCCACCA+CGG 0.647973 1.1:+80195380 None:intergenic
AGCCACCAACAACACAAGCA+TGG 0.648785 1.1:+80192904 None:intergenic
GGTACCCCTTTCAAGGCTAG+AGG 0.653441 1.1:-80195445 MS.gene037324:CDS
AAAATACCCTCATGTCTATG+GGG 0.663716 1.1:+80195325 None:intergenic
GTAGAATTCTCCCATCGAAG+TGG 0.663836 1.1:-80194550 MS.gene037324:CDS
GGCGCTAAAGTCCTTTACCT+AGG 0.679116 1.1:-80194739 MS.gene037324:CDS
ACCCTCCACCAGAACCACCA+CGG 0.696616 1.1:+80195545 None:intergenic
GCCACCTCTAGCCTTGAAAG+GGG 0.697135 1.1:+80195441 None:intergenic
TGAGAAAGGAAATACCTGCA+CGG 0.697697 1.1:+80195222 None:intergenic
GTTCTGTTACCTCGAACAGG+AGG 0.699595 1.1:+80195735 None:intergenic
TGAGGCAGTATTCAGCGCTG+AGG 0.706093 1.1:-80192994 MS.gene037324:CDS
ATATATTGTCGACACCACCA+AGG 0.737399 1.1:+80194854 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTAATTTTTTTTT+TGG - chr1.1:80195533-80195552 MS.gene037324:CDS 0.0%
!! GAAAATCATTAAAATAAATT+AGG + chr1.1:80194859-80194878 None:intergenic 10.0%
!! TGAAAATTTATAAACAAAAT+TGG + chr1.1:80194604-80194623 None:intergenic 10.0%
!!! TTTATTTGTTAAAATCAAAT+GGG - chr1.1:80192951-80192970 MS.gene037324:CDS 10.0%
!!! TTTTTAATTTGTTAACTTTT+TGG - chr1.1:80194882-80194901 MS.gene037324:CDS 10.0%
!! ATATGATGTTTATTAAATAG+TGG - chr1.1:80194947-80194966 MS.gene037324:intron 15.0%
!! TAATGCATAACAAAAAAATA+CGG + chr1.1:80195345-80195364 None:intergenic 15.0%
!! TGTCAATATAATGTATTTAA+AGG + chr1.1:80193822-80193841 None:intergenic 15.0%
!!! CAATTTTATTTTGTATTTGT+AGG - chr1.1:80195565-80195584 MS.gene037324:intron 15.0%
!!! CATTTGATTTTAACAAATAA+AGG + chr1.1:80192952-80192971 None:intergenic 15.0%
!!! CTTTATTTGTTAAAATCAAA+TGG - chr1.1:80192950-80192969 MS.gene037324:CDS 15.0%
!!! TTATATTGACATCTTAATTT+TGG - chr1.1:80193831-80193850 MS.gene037324:intron 15.0%
!! ATGTTATTGTCTAGTAAAAT+AGG + chr1.1:80193517-80193536 None:intergenic 20.0%
!! CATGTTATTCTATTTAATAG+TGG - chr1.1:80193635-80193654 MS.gene037324:intron 20.0%
!! CGAAAATTTATAAACAAAAC+AGG + chr1.1:80194578-80194597 None:intergenic 20.0%
!!! GTGTAAAATGTAAAATGTTT+TGG - chr1.1:80194409-80194428 MS.gene037324:intron 20.0%
!!! TGTTTTATAATGTTAAGAAC+AGG - chr1.1:80194765-80194784 MS.gene037324:intron 20.0%
!!! TTTTAAAGCTTACTTTCTAT+AGG - chr1.1:80195303-80195322 MS.gene037324:CDS 20.0%
! AACACAAAACATACATATGT+TGG + chr1.1:80193986-80194005 None:intergenic 25.0%
! AATAAACTCTAATTCGAACA+AGG + chr1.1:80192912-80192931 None:intergenic 25.0%
! ACTTCAATAACAATAAACCA+TGG - chr1.1:80195364-80195383 MS.gene037324:CDS 25.0%
! ATAATGTTAAGAACAGGATT+GGG - chr1.1:80194771-80194790 MS.gene037324:intron 25.0%
! ATCTATCCAATGAAGTTATA+AGG + chr1.1:80195437-80195456 None:intergenic 25.0%
! CTTCAATAACAATAAACCAT+GGG - chr1.1:80195365-80195384 MS.gene037324:CDS 25.0%
! TAAAATAAATTAGGCTCAAC+TGG + chr1.1:80194850-80194869 None:intergenic 25.0%
! TATAATGTTAAGAACAGGAT+TGG - chr1.1:80194770-80194789 MS.gene037324:intron 25.0%
! TATACTATGTTGATATTTGC+AGG - chr1.1:80195172-80195191 MS.gene037324:intron 25.0%
! TGATGTTTATTAAATAGTGG+TGG - chr1.1:80194950-80194969 MS.gene037324:intron 25.0%
!! ATATGTATGTTTTGTGTTTG+AGG - chr1.1:80193988-80194007 MS.gene037324:intron 25.0%
!! ATTCATTCACCATTTTACAA+AGG + chr1.1:80195474-80195493 None:intergenic 25.0%
!! TTTTGACCTTATAACTTCAT+TGG - chr1.1:80195428-80195447 MS.gene037324:CDS 25.0%
!!! ACACTTTGTTATTTCTATCA+AGG - chr1.1:80195241-80195260 MS.gene037324:CDS 25.0%
!!! AGCTTTAAAAAACAAGAAAC+TGG + chr1.1:80195293-80195312 None:intergenic 25.0%
AAATATGTGCATCAGAATCT+CGG + chr1.1:80194504-80194523 None:intergenic 30.0%
AACTGTGGAATCAATACAAT+TGG + chr1.1:80195591-80195610 None:intergenic 30.0%
AATGTTAACCAAATAGCAGT+GGG - chr1.1:80195114-80195133 MS.gene037324:intron 30.0%
AGATTGCAAATCAACAATCA+AGG + chr1.1:80195034-80195053 None:intergenic 30.0%
CAAGGATATAATGCAAGATA+CGG + chr1.1:80195016-80195035 None:intergenic 30.0%
CTAAGACAGAGTATAGAATT+TGG - chr1.1:80193701-80193720 MS.gene037324:intron 30.0%
CTGTAAGTATTAGTTCAACT+TGG - chr1.1:80193941-80193960 MS.gene037324:intron 30.0%
CTTACTTTCTATAGGAATCT+TGG - chr1.1:80195311-80195330 MS.gene037324:CDS 30.0%
GAAGTTATAAGGTCAAAATG+AGG + chr1.1:80195426-80195445 None:intergenic 30.0%
TAATGTTAACCAAATAGCAG+TGG - chr1.1:80195113-80195132 MS.gene037324:intron 30.0%
TAATGTTAAGAACAGGATTG+GGG - chr1.1:80194772-80194791 MS.gene037324:intron 30.0%
TATAACATTAGTACGCTTCT+TGG + chr1.1:80194106-80194125 None:intergenic 30.0%
TGCATTAGTAGAAAAGTGAA+TGG + chr1.1:80194293-80194312 None:intergenic 30.0%
TGTCTAGCATCTTCAATAAT+TGG + chr1.1:80194129-80194148 None:intergenic 30.0%
! ACCATTTTACAAAGGTTTGA+AGG + chr1.1:80195466-80195485 None:intergenic 30.0%
! ACTGATTTAATGTGTCTTGA+TGG - chr1.1:80194352-80194371 MS.gene037324:intron 30.0%
! AGATTCTGATGCACATATTT+TGG - chr1.1:80194504-80194523 MS.gene037324:CDS 30.0%
! CAAGTTGAACTAATACTTAC+AGG + chr1.1:80193943-80193962 None:intergenic 30.0%
! CCATTTTACAAAGGTTTGAA+GGG + chr1.1:80195465-80195484 None:intergenic 30.0%
! TATTTGCAGGCAAGAATTTT+AGG - chr1.1:80195185-80195204 MS.gene037324:intron 30.0%
!! TTGATTGTTGATTTGCAATC+TGG - chr1.1:80195033-80195052 MS.gene037324:intron 30.0%
!! TTGGTTTTTATCTAGAAACC+TGG - chr1.1:80193850-80193869 MS.gene037324:intron 30.0%
!!! TGTTTTGGTTACTACAACAT+CGG - chr1.1:80194424-80194443 MS.gene037324:CDS 30.0%
AAAATACCCTCATGTCTATG+GGG + chr1.1:80193288-80193307 None:intergenic 35.0%
AAATTAAACCACACCTGATC+AGG + chr1.1:80194213-80194232 None:intergenic 35.0%
AACTCTAATTCGAACAAGGA+TGG + chr1.1:80192908-80192927 None:intergenic 35.0%
AAGCTGTTTACAATGAGAAG+AGG - chr1.1:80193361-80193380 MS.gene037324:intron 35.0%
AATATGTGCATCAGAATCTC+GGG + chr1.1:80194503-80194522 None:intergenic 35.0%
AATGTTAAGAACAGGATTGG+GGG - chr1.1:80194773-80194792 MS.gene037324:intron 35.0%
ACCAAAAATGACTTACTGCA+AGG + chr1.1:80194985-80195004 None:intergenic 35.0%
AGCTGATCAATTTAAGCCAA+TGG - chr1.1:80195652-80195671 MS.gene037324:intron 35.0%
AGCTGTTTACAATGAGAAGA+GGG - chr1.1:80193362-80193381 MS.gene037324:intron 35.0%
ATCATCCAAGAAGTCTTGAA+GGG + chr1.1:80194475-80194494 None:intergenic 35.0%
ATTCAAAGCACAAACATCCA+AGG + chr1.1:80193415-80193434 None:intergenic 35.0%
ATTGATGTGCATCAGAATCT+CGG + chr1.1:80194716-80194735 None:intergenic 35.0%
CAATAAACCATGGGAAAATG+AGG - chr1.1:80195374-80195393 MS.gene037324:CDS 35.0%
CATGTTCTGTTTATGTAGAC+TGG - chr1.1:80194024-80194043 MS.gene037324:intron 35.0%
CCCTTCAAACCTTTGTAAAA+TGG - chr1.1:80195462-80195481 MS.gene037324:CDS 35.0%
GAAAATACCCTCATGTCTAT+GGG + chr1.1:80193289-80193308 None:intergenic 35.0%
GCTTCATATTATCTCAAAGC+TGG - chr1.1:80195215-80195234 MS.gene037324:intron 35.0%
TAGGCTCAACTGGAAAAAAA+GGG + chr1.1:80194840-80194859 None:intergenic 35.0%
TCATATTATCTCAAAGCTGG+AGG - chr1.1:80195218-80195237 MS.gene037324:intron 35.0%
TCTCATGTGTCTGATATTGT+TGG - chr1.1:80193916-80193935 MS.gene037324:intron 35.0%
TGAAAATACCCTCATGTCTA+TGG + chr1.1:80193290-80193309 None:intergenic 35.0%
TGGGAAAATGAGGTTAGTAT+TGG - chr1.1:80195384-80195403 MS.gene037324:CDS 35.0%
TTAGGCTCAACTGGAAAAAA+AGG + chr1.1:80194841-80194860 None:intergenic 35.0%
TTGTTGCGTTGAATTTGTAC+AGG - chr1.1:80193042-80193061 MS.gene037324:intron 35.0%
! ATACTAACCTCATTTTCCCA+TGG + chr1.1:80195384-80195403 None:intergenic 35.0%
! GACATATTTTCTGCAGAATG+AGG - chr1.1:80193672-80193691 MS.gene037324:intron 35.0%
! TATTTTCTGCAGAATGAGGA+TGG - chr1.1:80193676-80193695 MS.gene037324:intron 35.0%
!! ACCTTGCAGTAAGTCATTTT+TGG - chr1.1:80194981-80195000 MS.gene037324:intron 35.0%
!! TAATGACTTGTTTAGGCACA+TGG - chr1.1:80194799-80194818 MS.gene037324:intron 35.0%
!!! GAGGGTATTTTCATTGCTAA+GGG - chr1.1:80193297-80193316 MS.gene037324:intron 35.0%
!!! TCGGCATCTTTTTTCTTCTT+GGG + chr1.1:80195740-80195759 None:intergenic 35.0%
!!! TGAGGGTATTTTCATTGCTA+AGG - chr1.1:80193296-80193315 MS.gene037324:intron 35.0%
AACCAACATTCTGTACTTGG+CGG + chr1.1:80194154-80194173 None:intergenic 40.0%
ACACTGACACGTAGAATACA+TGG + chr1.1:80195148-80195167 None:intergenic 40.0%
AGTGCATGTGATGAGTTACT+CGG - chr1.1:80194657-80194676 MS.gene037324:intron 40.0%
ATATATTGTCGACACCACCA+AGG + chr1.1:80193759-80193778 None:intergenic 40.0%
CAAACATCCAAGGATGAGAA+AGG + chr1.1:80193405-80193424 None:intergenic 40.0%
CATCATCCAAGAAGTCTTGA+AGG + chr1.1:80194476-80194495 None:intergenic 40.0%
GACTCTTGAACCATTTGAGA+GGG - chr1.1:80195682-80195701 MS.gene037324:intron 40.0%
GGTATTTCCTTTCTCATCCT+TGG - chr1.1:80193395-80193414 MS.gene037324:CDS 40.0%
GTCACTAAGAATCTTGTTCC+TGG - chr1.1:80193336-80193355 MS.gene037324:intron 40.0%
TAGAATTCTCCCATCGAAGT+GGG - chr1.1:80194061-80194080 MS.gene037324:intron 40.0%
TCATCCAAGAAGTCTTGAAG+GGG + chr1.1:80194474-80194493 None:intergenic 40.0%
TCATTGTAAACAGCTTCTCC+AGG + chr1.1:80193357-80193376 None:intergenic 40.0%
TGACTCTTGAACCATTTGAG+AGG - chr1.1:80195681-80195700 MS.gene037324:intron 40.0%
TGAGAAAGGAAATACCTGCA+CGG + chr1.1:80193391-80193410 None:intergenic 40.0%
TGTCAATGTTGATGCTTGCT+TGG - chr1.1:80195497-80195516 MS.gene037324:CDS 40.0%
TTGATGTGCATCAGAATCTC+GGG + chr1.1:80194715-80194734 None:intergenic 40.0%
!! TTGGTGGTGTCGACAATATA+TGG - chr1.1:80193758-80193777 MS.gene037324:intron 40.0%
!!! CTCGGCATCTTTTTTCTTCT+TGG + chr1.1:80195741-80195760 None:intergenic 40.0%
ACCAACATTCTGTACTTGGC+GGG + chr1.1:80194153-80194172 None:intergenic 45.0%
AGATTCGTCCCACTGCTATT+TGG + chr1.1:80195125-80195144 None:intergenic 45.0%
CTGCCAACTTAGAACGGAAA+GGG + chr1.1:80193729-80193748 None:intergenic 45.0%
GATTCCCCTTCAAGACTTCT+TGG - chr1.1:80194467-80194486 MS.gene037324:CDS 45.0%
GCCAACCAACATTCTGTACT+TGG + chr1.1:80194157-80194176 None:intergenic 45.0%
GCCAAGTACAGAATGTTGGT+TGG - chr1.1:80194153-80194172 MS.gene037324:intron 45.0%
GGTGCATGTGATGAGTTACT+CGG - chr1.1:80194445-80194464 MS.gene037324:CDS 45.0%
GTAGAATTCTCCCATCGAAG+TGG - chr1.1:80194060-80194079 MS.gene037324:intron 45.0%
GTTGAACCCCATAGACATGA+GGG - chr1.1:80193279-80193298 MS.gene037324:intron 45.0%
TCAAGAGTCACTTGCTCCAT+TGG + chr1.1:80195671-80195690 None:intergenic 45.0%
TGTTGAACCCCATAGACATG+AGG - chr1.1:80193278-80193297 MS.gene037324:intron 45.0%
! GAACCCTTTCCGTTCTAAGT+TGG - chr1.1:80193723-80193742 MS.gene037324:intron 45.0%
! GTACAGAATGTTGGTTGGCA+TGG - chr1.1:80194158-80194177 MS.gene037324:intron 45.0%
!! AGATAGAGGTACCCCTTTCA+AGG - chr1.1:80193158-80193177 MS.gene037324:intron 45.0%
!! GGGGCAGTAATGACTTGTTT+AGG - chr1.1:80194792-80194811 MS.gene037324:intron 45.0%
AGCCACCAACAACACAAGCA+TGG + chr1.1:80195709-80195728 None:intergenic 50.0%
AGGGACCATGCTTGTGTTGT+TGG - chr1.1:80195701-80195720 MS.gene037324:intron 50.0%
AGGTAAAGGACTTTAGCGCC+AGG + chr1.1:80193871-80193890 None:intergenic 50.0%
ATAGAGGAGGTAGAGGAGGT+GGG - chr1.1:80193109-80193128 MS.gene037324:intron 50.0%
CAAGCATGGTCCCTCTCAAA+TGG + chr1.1:80195695-80195714 None:intergenic 50.0%
CAGAAGCAGCTCCTAGGTAA+AGG + chr1.1:80193885-80193904 None:intergenic 50.0%
CAGCAGCTGCCAACTTAGAA+CGG + chr1.1:80193735-80193754 None:intergenic 50.0%
CGTGTTCTGTTACCTCGAAC+AGG + chr1.1:80192881-80192900 None:intergenic 50.0%
CGTTGAATTTGTACAGGCCG+TGG - chr1.1:80193048-80193067 MS.gene037324:intron 50.0%
CTTTACCTAGGAGCTGCTTC+TGG - chr1.1:80193883-80193902 MS.gene037324:intron 50.0%
GCTGCCAACTTAGAACGGAA+AGG + chr1.1:80193730-80193749 None:intergenic 50.0%
GGCGCTAAAGTCCTTTACCT+AGG - chr1.1:80193871-80193890 MS.gene037324:intron 50.0%
GTTCTGTTACCTCGAACAGG+AGG + chr1.1:80192878-80192897 None:intergenic 50.0%
TCCCGCCAAGTACAGAATGT+TGG - chr1.1:80194149-80194168 MS.gene037324:intron 50.0%
TGAATTTGTACAGGCCGTGG+TGG - chr1.1:80193051-80193070 MS.gene037324:intron 50.0%
TGATGTTGCTCAGCCTGATC+AGG - chr1.1:80194197-80194216 MS.gene037324:intron 50.0%
TGATTCCACAGTTCCAGCTG+AGG - chr1.1:80195598-80195617 MS.gene037324:intron 50.0%
TGGAATGAAGGGAGGAAGCA+AGG - chr1.1:80193251-80193270 MS.gene037324:intron 50.0%
TTGTTCCAGAAGCAGCTCCT+AGG + chr1.1:80193891-80193910 None:intergenic 50.0%
! GACCATGCTTGTGTTGTTGG+TGG - chr1.1:80195704-80195723 MS.gene037324:intron 50.0%
!! GGAAGAGGTGGTGGAATGAA+GGG - chr1.1:80193240-80193259 MS.gene037324:intron 50.0%
!! TGGGCGTGACTTGGTCAATA+TGG - chr1.1:80194080-80194099 MS.gene037324:intron 50.0%
AAGTTGGCAGCTGCTGTCCT+TGG - chr1.1:80193739-80193758 MS.gene037324:intron 55.0%
ACCCCTTTCAAGGCTAGAGG+TGG - chr1.1:80193168-80193187 MS.gene037324:intron 55.0%
CAAGTCACGCCCACTTCGAT+GGG + chr1.1:80194073-80194092 None:intergenic 55.0%
CCTTTCAAGGCTAGAGGTGG+CGG - chr1.1:80193171-80193190 MS.gene037324:intron 55.0%
GATAGAGGAGGTAGAGGAGG+TGG - chr1.1:80193108-80193127 MS.gene037324:intron 55.0%
GGTACCCCTTTCAAGGCTAG+AGG - chr1.1:80193165-80193184 MS.gene037324:intron 55.0%
GGTGATAGAGGAGGTAGAGG+AGG - chr1.1:80193105-80193124 MS.gene037324:intron 55.0%
GGTGGTGATAGAGGAGGTAG+AGG - chr1.1:80193102-80193121 MS.gene037324:intron 55.0%
TACTGCCTCAGCTGGAACTG+TGG + chr1.1:80195606-80195625 None:intergenic 55.0%
TGAGAAGAGGGTTACCGTGC+AGG - chr1.1:80193374-80193393 MS.gene037324:CDS 55.0%
TGAGGCAGTATTCAGCGCTG+AGG - chr1.1:80195616-80195635 MS.gene037324:intron 55.0%
TGGAGGGTTCAGAGGAGGAA+GGG - chr1.1:80193080-80193099 MS.gene037324:intron 55.0%
TTGCTCAGCCTGATCAGGTG+TGG - chr1.1:80194202-80194221 MS.gene037324:intron 55.0%
!! AGAGGTGGTGGAATGAAGGG+AGG - chr1.1:80193243-80193262 MS.gene037324:intron 55.0%
!! CGCCACCTCTAGCCTTGAAA+GGG + chr1.1:80193173-80193192 None:intergenic 55.0%
!! CGGAAGAGGTGGTGGAATGA+AGG - chr1.1:80193239-80193258 MS.gene037324:intron 55.0%
!! GCCACCTCTAGCCTTGAAAG+GGG + chr1.1:80193172-80193191 None:intergenic 55.0%
!!! AGAGGTGGTTTTGGAGGACG+AGG - chr1.1:80193132-80193151 MS.gene037324:intron 55.0%
ACCCTCCACCAGAACCACCA+CGG + chr1.1:80193068-80193087 None:intergenic 60.0%
CCAAGTCACGCCCACTTCGA+TGG + chr1.1:80194074-80194093 None:intergenic 60.0%
CCATCGAAGTGGGCGTGACT+TGG - chr1.1:80194071-80194090 MS.gene037324:intron 60.0%
GCGCTGAATACTGCCTCAGC+TGG + chr1.1:80195614-80195633 None:intergenic 60.0%
GGAAGGGGTGGTGATAGAGG+AGG - chr1.1:80193096-80193115 MS.gene037324:intron 60.0%
GGAGGAAGGGGTGGTGATAG+AGG - chr1.1:80193093-80193112 MS.gene037324:intron 60.0%
GGAGGACGAGGAGGAGATAG+AGG - chr1.1:80193144-80193163 MS.gene037324:intron 60.0%
GGAGGGTTCAGAGGAGGAAG+GGG - chr1.1:80193081-80193100 MS.gene037324:intron 60.0%
GTGGAGGGTTCAGAGGAGGA+AGG - chr1.1:80193079-80193098 MS.gene037324:intron 60.0%
TCTGGTGGAGGGTTCAGAGG+AGG - chr1.1:80193075-80193094 MS.gene037324:intron 60.0%
TGTACAGGCCGTGGTGGTTC+TGG - chr1.1:80193057-80193076 MS.gene037324:intron 60.0%
TTGGCAGCTGCTGTCCTTGG+TGG - chr1.1:80193742-80193761 MS.gene037324:intron 60.0%
! AAGGCTAGAGGTGGCGGTAG+AGG - chr1.1:80193177-80193196 MS.gene037324:intron 60.0%
! GGAGGTGGGAGAGGTGGTTT+TGG - chr1.1:80193123-80193142 MS.gene037324:intron 60.0%
! GGTTCTGGTGGAGGGTTCAG+AGG - chr1.1:80193072-80193091 MS.gene037324:intron 60.0%
!! CCGCCACCTCTAGCCTTGAA+AGG + chr1.1:80193174-80193193 None:intergenic 60.0%
!!! GGTGGGAGAGGTGGTTTTGG+AGG - chr1.1:80193126-80193145 MS.gene037324:intron 60.0%
!!! GGTGGTTTTGGAGGACGAGG+AGG - chr1.1:80193135-80193154 MS.gene037324:intron 60.0%
CACCACCTCTTCCGCCACCA+CGG + chr1.1:80193233-80193252 None:intergenic 65.0%
GGAGGTAGAGGAGGTGGGAG+AGG - chr1.1:80193114-80193133 MS.gene037324:intron 65.0%
GGGTTCAGAGGAGGAAGGGG+TGG - chr1.1:80193084-80193103 MS.gene037324:intron 65.0%
GGTAGAGGAGGTGGGAGAGG+TGG - chr1.1:80193117-80193136 MS.gene037324:intron 65.0%
! GCTAGAGGTGGCGGTAGAGG+CGG - chr1.1:80193180-80193199 MS.gene037324:intron 65.0%
!! ACAGGCCGTGGTGGTTCTGG+TGG - chr1.1:80193060-80193079 MS.gene037324:intron 65.0%
!! GCCGTGGTGGTTCTGGTGGA+GGG - chr1.1:80193064-80193083 MS.gene037324:intron 65.0%
AGAGGCGGAGGAGGCAGAGG+AGG - chr1.1:80193195-80193214 MS.gene037324:intron 70.0%
GGAGGAGGCAGAGGAGGACG+TGG - chr1.1:80193201-80193220 MS.gene037324:intron 70.0%
GGAGGCAGAGGAGGACGTGG+AGG - chr1.1:80193204-80193223 MS.gene037324:intron 70.0%
GGCAGAGGAGGACGTGGAGG+AGG - chr1.1:80193207-80193226 MS.gene037324:intron 70.0%
GGTAGAGGCGGAGGAGGCAG+AGG - chr1.1:80193192-80193211 MS.gene037324:intron 70.0%
! AGAGGTGGCGGTAGAGGCGG+AGG - chr1.1:80193183-80193202 MS.gene037324:intron 70.0%
!! CGTGGTGGCGGAAGAGGTGG+TGG - chr1.1:80193231-80193250 MS.gene037324:intron 70.0%
!! GGCCGTGGTGGTTCTGGTGG+AGG - chr1.1:80193063-80193082 MS.gene037324:intron 70.0%
CGTGGAGGAGGCCGTGGTGG+CGG - chr1.1:80193219-80193238 MS.gene037324:intron 75.0%
GGACGTGGAGGAGGCCGTGG+TGG - chr1.1:80193216-80193235 MS.gene037324:intron 75.0%
GGAGGACGTGGAGGAGGCCG+TGG - chr1.1:80193213-80193232 MS.gene037324:intron 75.0%
! GGTGGCGGTAGAGGCGGAGG+AGG - chr1.1:80193186-80193205 MS.gene037324:intron 75.0%
!! GGAGGCCGTGGTGGCGGAAG+AGG - chr1.1:80193225-80193244 MS.gene037324:intron 75.0%
!! GGCCGTGGTGGCGGAAGAGG+TGG - chr1.1:80193228-80193247 MS.gene037324:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 80192869 80195763 80192869 ID=MS.gene037324
chr1.1 mRNA 80192869 80195763 80192869 ID=MS.gene037324.t1;Parent=MS.gene037324
chr1.1 exon 80195745 80195763 80195745 ID=MS.gene037324.t1.exon1;Parent=MS.gene037324.t1
chr1.1 CDS 80195745 80195763 80195745 ID=cds.MS.gene037324.t1;Parent=MS.gene037324.t1
chr1.1 exon 80195237 80195568 80195237 ID=MS.gene037324.t1.exon2;Parent=MS.gene037324.t1
chr1.1 CDS 80195237 80195568 80195237 ID=cds.MS.gene037324.t1;Parent=MS.gene037324.t1
chr1.1 exon 80194849 80194944 80194849 ID=MS.gene037324.t1.exon3;Parent=MS.gene037324.t1
chr1.1 CDS 80194849 80194944 80194849 ID=cds.MS.gene037324.t1;Parent=MS.gene037324.t1
chr1.1 exon 80194690 80194767 80194690 ID=MS.gene037324.t1.exon4;Parent=MS.gene037324.t1
chr1.1 CDS 80194690 80194767 80194690 ID=cds.MS.gene037324.t1;Parent=MS.gene037324.t1
chr1.1 exon 80194414 80194590 80194414 ID=MS.gene037324.t1.exon5;Parent=MS.gene037324.t1
chr1.1 CDS 80194414 80194590 80194414 ID=cds.MS.gene037324.t1;Parent=MS.gene037324.t1
chr1.1 exon 80193370 80193438 80193370 ID=MS.gene037324.t1.exon6;Parent=MS.gene037324.t1
chr1.1 CDS 80193370 80193438 80193370 ID=cds.MS.gene037324.t1;Parent=MS.gene037324.t1
chr1.1 exon 80192869 80193045 80192869 ID=MS.gene037324.t1.exon7;Parent=MS.gene037324.t1
chr1.1 CDS 80192869 80193045 80192869 ID=cds.MS.gene037324.t1;Parent=MS.gene037324.t1
Gene Sequence

>MS.gene037324

ATGGCTCCTCCTGTTCGAGGTAACAGAACACGTTAACCATCCTTGTTCGAATTAGAGTTTATTGATGATGCTTTTGTTTACCTTTATTTGTTAAAATCAAATGGGTTTACGCTAATTTGCTCAAAAGAATGATTTTGCTTGTTTTATGAACTATATAGTGATTTTTGTTGATATTGTTGCGTTGAATTTGTACAGGCCGTGGTGGTTCTGGTGGAGGGTTCAGAGGAGGAAGGGGTGGTGATAGAGGAGGTAGAGGAGGTGGGAGAGGTGGTTTTGGAGGACGAGGAGGAGATAGAGGTACCCCTTTCAAGGCTAGAGGTGGCGGTAGAGGCGGAGGAGGCAGAGGAGGACGTGGAGGAGGCCGTGGTGGCGGAAGAGGTGGTGGAATGAAGGGAGGAAGCAAGGTTATTGTTGAACCCCATAGACATGAGGGTATTTTCATTGCTAAGGGTAAAGAAGATGCTCTTGTCACTAAGAATCTTGTTCCTGGAGAAGCTGTTTACAATGAGAAGAGGGTTACCGTGCAGGTATTTCCTTTCTCATCCTTGGATGTTTGTGCTTTGAATTTATTTAGCTCTTTTCAAATTAGTAGCTGTCGATTGAGTTTAACTTACATGTTTATGTGTTGCAATCAATCATTTTGTTCCTATTTTACTAGACAATAACATCTCTTTTACTTGATTTTATCACATAAATGTGCTTACAAATCTTGCAAAATATTTTTCTGAATGTGATATTTTTTTTCAAGATTTCAGTGTGTATCAGTCATGTTATTCTATTTAATAGTGGCATGACAATTTTGTGACATATTTTCTGCAGAATGAGGATGGTACTAAGACAGAGTATAGAATTTGGAACCCTTTCCGTTCTAAGTTGGCAGCTGCTGTCCTTGGTGGTGTCGACAATATATGGATTGTAAGTTGCTTCATTTTTCTGTAACATTACACTGTCCTTTAAATACATTATATTGACATCTTAATTTTGGTTTTTATCTAGAAACCTGGCGCTAAAGTCCTTTACCTAGGAGCTGCTTCTGGAACAACTGTGTCTCATGTGTCTGATATTGTTGGTCCTGTAAGTATTAGTTCAACTTGGTTGATTTTTTTTTCTTCTTCCAACATATGTATGTTTTGTGTTTGAGGCTGATTAGAATATCATGTTCTGTTTATGTAGACTGGAGTTGTGTATGCAGTAGAATTCTCCCATCGAAGTGGGCGTGACTTGGTCAATATGGCCAAGAAGCGTACTAATGTTATACCAATTATTGAAGATGCTAGACATCCCGCCAAGTACAGAATGTTGGTTGGCATGGTAGATGTGATATTTTCTGATGTTGCTCAGCCTGATCAGGTGTGGTTTAATTTTTCACTCTTTTTTATGTTAAGAGTACTAGCTATATATTTTTAACTCTCATGATAGTACCATTCACTTTTCTACTAATGCATAACATTAATCTCTACTATGTCATTGTAGTAATCTATTTACTGATTTAATGTGTCTTGATGGAATGCATAATTTGTTTATTATTGTTTATTTCAAAGTGTAAAATGTAAAATGTTTTGGTTACTACAACATCGGTGCATGTGATGAGTTACTCGGATTCCCCTTCAAGACTTCTTGGATGATGTAGACCCGAGATTCTGATGCACATATTTTGGTCTTTTTCTTTATATTGTTTTACTAAAAACTAATACTGTATTTTAAATCCTGTTTTGTTTATAAATTTTCGTTTCCAATTTTGTTTATAAATTTTCATTTCAAAGTGTAAAATGTTTTGATCACTACATCAGTGCATGTGATGAGTTACTCGGATTCCCCTTCAAGACTTCTTGGATGATGTAGACCCGAGATTCTGATGCACATCAATTTTTTTTTTCTCTCTCTATTTATCTATATTGTTTTATAATGTTAAGAACAGGATTGGGGGCAGTAATGACTTGTTTAGGCACATGGTTTTTGTTTCAGATTCCCTTTTTTTCCAGTTGAGCCTAATTTATTTTAATGATTTTCAGATTTTTAATTTGTTAACTTTTTGGTGTTTGTTTTCTATGAATGAATTTGATCGAAATGTGTTGTATATATGATGTTTATTAAATAGTGGTGGCTTGAAACACCTTGCAGTAAGTCATTTTTGGTTTGCGTTTCCGTATCTTGCATTATATCCTTGATTGTTGATTTGCAATCTGGATTTTTATTTGTTACTTTTGATGTCTGTTTGTTTTTAATAAATATAAGTGTAAGTGTTAATGTTAACCAAATAGCAGTGGGACGAATCTCCATGTATTCTACGTGTCAGTGTTGATTATACTATGTTGATATTTGCAGGCAAGAATTTTAGGTCTGAATGCTTCATATTATCTCAAAGCTGGAGGACACTTTGTTATTTCTATCAAGGTTTGTTCAGAATTCTATTGTATTAAACCAGTTTCTTGTTTTTTAAAGCTTACTTTCTATAGGAATCTTGGAAAACAATCCGTATTTTTTTGTTATGCATTACTTCAATAACAATAAACCATGGGAAAATGAGGTTAGTATTGGCGTGTGCTCATTTTGACCTCATTTTGACCTTATAACTTCATTGGATAGATAAAATCCCTTCAAACCTTTGTAAAATGGTGAATGAATTTATGTCAATGTTGATGCTTGCTTGGCTTTGAATTAAGTTTAAATTTTAATTTTTTTTTTGGTTTCTAAATCAATTTTATTTTGTATTTGTAGGCCAATTGTATTGATTCCACAGTTCCAGCTGAGGCAGTATTCAGCGCTGAGGTGAACAAGTTGAAAGCTGATCAATTTAAGCCAATGGAGCAAGTGACTCTTGAACCATTTGAGAGGGACCATGCTTGTGTTGTTGGTGGCTATAGAGTGCCCAAGAAGAAAAAAGATGCCGAGTAG
Protein sequence

>MS.gene037324.t1

MAPPVRGRGGSGGGFRGGRGGDRGGRGGGRGGFGGRGGDRGTPFKARGGGRGGGGRGGRGGGRGGGRGGGMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRVTVQNEDGTKTEYRIWNPFRSKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTVPAEAVFSAEVNKLKADQFKPMEQVTLEPFERDHACVVGGYRVPKKKKDAE