Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029242.t1 | XP_003592692.1 | 100 | 239 | 0 | 0 | 77 | 315 | 75 | 313 | 3.00E-132 | 481.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029242.t1 | Q94AH9 | 90.8 | 238 | 22 | 0 | 77 | 314 | 80 | 317 | 7.5e-124 | 444.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029242.t1 | G7IDD7 | 100.0 | 239 | 0 | 0 | 77 | 315 | 75 | 313 | 2.2e-132 | 481.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029242.t1 | MTR_1g114000 | 99.365 | 315 | 0 | 1 | 1 | 315 | 1 | 313 | 0.0 | 616 |
MS.gene029242.t1 | MTR_6g047580 | 97.510 | 241 | 6 | 0 | 75 | 315 | 69 | 309 | 2.40e-175 | 488 |
MS.gene029242.t1 | MTR_6g047580 | 93.985 | 266 | 16 | 0 | 50 | 315 | 12 | 277 | 6.08e-173 | 480 |
MS.gene029242.t1 | MTR_6g047580 | 97.826 | 184 | 4 | 0 | 75 | 258 | 69 | 252 | 1.23e-129 | 370 |
MS.gene029242.t1 | MTR_6g047580 | 84.293 | 191 | 28 | 1 | 75 | 265 | 69 | 257 | 1.06e-112 | 327 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029242.t1 | AT4G25630 | 90.984 | 244 | 22 | 0 | 71 | 314 | 74 | 317 | 9.87e-168 | 469 |
MS.gene029242.t1 | AT5G52470 | 90.083 | 242 | 24 | 0 | 71 | 312 | 63 | 304 | 2.68e-165 | 462 |
MS.gene029242.t1 | AT5G52490 | 71.074 | 242 | 70 | 0 | 69 | 310 | 51 | 292 | 2.40e-128 | 368 |
MS.gene029242.t1 | AT5G52470 | 93.902 | 164 | 10 | 0 | 71 | 234 | 63 | 226 | 3.16e-111 | 324 |
Find 111 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAAATACCCTCATGTCTA+TGG | 0.205671 | 1.4:+87116572 | None:intergenic |
GGAGGTGGGAGAGGTGGTTT+TGG | 0.245696 | 1.4:-87116736 | MS.gene029242:CDS |
TGTCTAGCATCTTCAATAAT+TGG | 0.265009 | 1.4:+87115733 | None:intergenic |
CTTTACCTAGGAGCTGCTTC+TGG | 0.296675 | 1.4:-87115978 | MS.gene029242:CDS |
TATAACATTAGTACGCTTCT+TGG | 0.324454 | 1.4:+87115756 | None:intergenic |
CTAAGACAGAGTATAGAATT+TGG | 0.324854 | 1.4:-87116158 | MS.gene029242:CDS |
TGTACAGGCCGTGGTGGTTC+TGG | 0.333264 | 1.4:-87116802 | MS.gene029242:intron |
GGAGGAAGGGGTGGTGATAG+AGG | 0.351363 | 1.4:-87116766 | MS.gene029242:CDS |
TGGGCGTGACTTGGTCAATA+TGG | 0.352165 | 1.4:-87115779 | MS.gene029242:CDS |
TCAAGAGTCACTTGCTCCAT+TGG | 0.352395 | 1.4:+87114190 | None:intergenic |
GGCCGTGGTGGTTCTGGTGG+AGG | 0.363670 | 1.4:-87116796 | MS.gene029242:CDS |
GGAGGCCGTGGTGGCGGAAG+AGG | 0.374341 | 1.4:-87116634 | MS.gene029242:CDS |
GGAGGTAGAGGAGGTGGGAG+AGG | 0.378171 | 1.4:-87116745 | MS.gene029242:CDS |
GATAGAGGAGGTAGAGGAGG+TGG | 0.391157 | 1.4:-87116751 | MS.gene029242:CDS |
CGGAAGAGGTGGTGGAATGA+AGG | 0.392714 | 1.4:-87116620 | MS.gene029242:CDS |
AGGGACCATGCTTGTGTTGT+TGG | 0.394797 | 1.4:-87114157 | MS.gene029242:CDS |
GTCACTAAGAATCTTGTTCC+TGG | 0.395090 | 1.4:-87116523 | MS.gene029242:CDS |
GGCAGAGGAGGACGTGGAGG+AGG | 0.399351 | 1.4:-87116652 | MS.gene029242:CDS |
TGATGTTGCTCAGCCTGATC+AGG | 0.400610 | 1.4:-87115662 | MS.gene029242:intron |
AGAGGTGGCGGTAGAGGCGG+AGG | 0.402146 | 1.4:-87116676 | MS.gene029242:CDS |
GGAGGGTTCAGAGGAGGAAG+GGG | 0.404742 | 1.4:-87116778 | MS.gene029242:CDS |
CGTGGAGGAGGCCGTGGTGG+CGG | 0.406160 | 1.4:-87116640 | MS.gene029242:CDS |
GGTAGAGGCGGAGGAGGCAG+AGG | 0.408492 | 1.4:-87116667 | MS.gene029242:CDS |
AAATTAAACCACACCTGATC+AGG | 0.414931 | 1.4:+87115649 | None:intergenic |
GGTGGCGGTAGAGGCGGAGG+AGG | 0.421527 | 1.4:-87116673 | MS.gene029242:CDS |
GGGTTCAGAGGAGGAAGGGG+TGG | 0.421936 | 1.4:-87116775 | MS.gene029242:CDS |
ACACTTTGTTATTTCTATCA+AGG | 0.422492 | 1.4:-87114617 | MS.gene029242:intron |
TTGGTGGTGTCGACAATATA+TGG | 0.424660 | 1.4:-87116101 | MS.gene029242:CDS |
GGAGGACGTGGAGGAGGCCG+TGG | 0.430468 | 1.4:-87116646 | MS.gene029242:CDS |
TGTGTTCTGTTACCTCGAAC+AGG | 0.438947 | 1.4:+87116972 | None:intergenic |
GGAGGACGAGGAGGAGATAG+AGG | 0.440185 | 1.4:-87116715 | MS.gene029242:CDS |
GGAGGAGGCAGAGGAGGACG+TGG | 0.443901 | 1.4:-87116658 | MS.gene029242:CDS |
AACTGTGGAATCAATACAAT+TGG | 0.448320 | 1.4:+87114270 | None:intergenic |
GCCAACCAACATTCTGTACT+TGG | 0.454773 | 1.4:+87115705 | None:intergenic |
CCATCGAAGTGGGCGTGACT+TGG | 0.458744 | 1.4:-87115788 | MS.gene029242:CDS |
ATAGAGGAGGTAGAGGAGGT+GGG | 0.464408 | 1.4:-87116750 | MS.gene029242:CDS |
CGTGGTGGCGGAAGAGGTGG+TGG | 0.465952 | 1.4:-87116628 | MS.gene029242:CDS |
GCTAGAGGTGGCGGTAGAGG+CGG | 0.468529 | 1.4:-87116679 | MS.gene029242:CDS |
AAGGCTAGAGGTGGCGGTAG+AGG | 0.468910 | 1.4:-87116682 | MS.gene029242:CDS |
TCTCATGTGTCTGATATTGT+TGG | 0.470006 | 1.4:-87115945 | MS.gene029242:CDS |
AGATAGAGGTACCCCTTTCA+AGG | 0.470760 | 1.4:-87116701 | MS.gene029242:CDS |
AAGTTGGCAGCTGCTGTCCT+TGG | 0.472296 | 1.4:-87116120 | MS.gene029242:CDS |
GCCGTGGTGGTTCTGGTGGA+GGG | 0.473475 | 1.4:-87116795 | MS.gene029242:CDS |
GGTAGAGGAGGTGGGAGAGG+TGG | 0.474660 | 1.4:-87116742 | MS.gene029242:CDS |
CGCCACCTCTAGCCTTGAAA+GGG | 0.477576 | 1.4:+87116689 | None:intergenic |
GAAAATACCCTCATGTCTAT+GGG | 0.477789 | 1.4:+87116573 | None:intergenic |
CCAAGTCACGCCCACTTCGA+TGG | 0.482871 | 1.4:+87115788 | None:intergenic |
AGAGGCGGAGGAGGCAGAGG+AGG | 0.484426 | 1.4:-87116664 | MS.gene029242:CDS |
GGTGGTGATAGAGGAGGTAG+AGG | 0.485873 | 1.4:-87116757 | MS.gene029242:CDS |
GGCCGTGGTGGCGGAAGAGG+TGG | 0.485933 | 1.4:-87116631 | MS.gene029242:CDS |
GGAAGAGGTGGTGGAATGAA+GGG | 0.492329 | 1.4:-87116619 | MS.gene029242:CDS |
CAAGCATGGTCCCTCTCAAA+TGG | 0.492656 | 1.4:+87114166 | None:intergenic |
GACCATGCTTGTGTTGTTGG+TGG | 0.497588 | 1.4:-87114154 | MS.gene029242:CDS |
TGAGAAGAGGGTTACCGTGC+AGG | 0.499140 | 1.4:-87116485 | MS.gene029242:intron |
ACCAACATTCTGTACTTGGC+GGG | 0.501411 | 1.4:+87115709 | None:intergenic |
GCGCTGAATACTGCCTCAGC+TGG | 0.502016 | 1.4:+87114247 | None:intergenic |
GCTTCATATTATCTCAAAGC+TGG | 0.503141 | 1.4:-87114643 | MS.gene029242:CDS |
GGTGATAGAGGAGGTAGAGG+AGG | 0.504276 | 1.4:-87116754 | MS.gene029242:CDS |
CAGAAGCAGCTCCTAGGTAA+AGG | 0.506248 | 1.4:+87115979 | None:intergenic |
CTCAAAATATAGAGGCTACT+CGG | 0.506705 | 1.4:+87114102 | None:intergenic |
CCGCCACCTCTAGCCTTGAA+AGG | 0.514108 | 1.4:+87116688 | None:intergenic |
TTGGCAGCTGCTGTCCTTGG+TGG | 0.517332 | 1.4:-87116117 | MS.gene029242:CDS |
AGCTGATCAATTTAAGCCAA+TGG | 0.520445 | 1.4:-87114206 | MS.gene029242:CDS |
TTGTTCCAGAAGCAGCTCCT+AGG | 0.523899 | 1.4:+87115973 | None:intergenic |
TCATTGTAAACAGCTTCTCC+AGG | 0.524882 | 1.4:+87116505 | None:intergenic |
AACCAACATTCTGTACTTGG+CGG | 0.526725 | 1.4:+87115708 | None:intergenic |
GGAGGCAGAGGAGGACGTGG+AGG | 0.526880 | 1.4:-87116655 | MS.gene029242:CDS |
TGGAATGAAGGGAGGAAGCA+AGG | 0.532988 | 1.4:-87116608 | MS.gene029242:CDS |
ACAATGGCTCCTCCTGTTCG+AGG | 0.533054 | 1.4:-87116984 | MS.gene029242:intron |
TGGAGGGTTCAGAGGAGGAA+GGG | 0.537472 | 1.4:-87116779 | MS.gene029242:CDS |
GAACCCTTTCCGTTCTAAGT+TGG | 0.539930 | 1.4:-87116136 | MS.gene029242:CDS |
GTACAGAATGTTGGTTGGCA+TGG | 0.545696 | 1.4:-87115701 | MS.gene029242:CDS |
CCTTTCAAGGCTAGAGGTGG+CGG | 0.550070 | 1.4:-87116688 | MS.gene029242:CDS |
TACTGCCTCAGCTGGAACTG+TGG | 0.556438 | 1.4:+87114255 | None:intergenic |
CTGCCAACTTAGAACGGAAA+GGG | 0.557631 | 1.4:+87116133 | None:intergenic |
AGGTAAAGGACTTTAGCGCC+AGG | 0.557851 | 1.4:+87115993 | None:intergenic |
CAAGTCACGCCCACTTCGAT+GGG | 0.558873 | 1.4:+87115789 | None:intergenic |
ACAGGCCGTGGTGGTTCTGG+TGG | 0.566444 | 1.4:-87116799 | MS.gene029242:intron |
GACTCTTGAACCATTTGAGA+GGG | 0.572197 | 1.4:-87114176 | MS.gene029242:CDS |
GTGGAGGGTTCAGAGGAGGA+AGG | 0.574068 | 1.4:-87116780 | MS.gene029242:CDS |
GGTTCTGGTGGAGGGTTCAG+AGG | 0.575244 | 1.4:-87116787 | MS.gene029242:CDS |
AGAGGTGGTGGAATGAAGGG+AGG | 0.576093 | 1.4:-87116616 | MS.gene029242:CDS |
GGACGTGGAGGAGGCCGTGG+TGG | 0.585474 | 1.4:-87116643 | MS.gene029242:CDS |
CAGCAGCTGCCAACTTAGAA+CGG | 0.593341 | 1.4:+87116127 | None:intergenic |
TCTGGTGGAGGGTTCAGAGG+AGG | 0.598909 | 1.4:-87116784 | MS.gene029242:CDS |
GGAAGGGGTGGTGATAGAGG+AGG | 0.599693 | 1.4:-87116763 | MS.gene029242:CDS |
AAGCTGTTTACAATGAGAAG+AGG | 0.601232 | 1.4:-87116498 | MS.gene029242:CDS |
AGCTGTTTACAATGAGAAGA+GGG | 0.603845 | 1.4:-87116497 | MS.gene029242:CDS |
GTTGAACCCCATAGACATGA+GGG | 0.606951 | 1.4:-87116580 | MS.gene029242:CDS |
TGATTCCACAGTTCCAGCTG+AGG | 0.607935 | 1.4:-87114260 | MS.gene029242:CDS |
TGACTCTTGAACCATTTGAG+AGG | 0.609035 | 1.4:-87114177 | MS.gene029242:CDS |
GCCAAGTACAGAATGTTGGT+TGG | 0.614552 | 1.4:-87115706 | MS.gene029242:CDS |
TCCCGCCAAGTACAGAATGT+TGG | 0.621000 | 1.4:-87115710 | MS.gene029242:CDS |
TGTTGAACCCCATAGACATG+AGG | 0.622170 | 1.4:-87116581 | MS.gene029242:CDS |
TAGAATTCTCCCATCGAAGT+GGG | 0.624110 | 1.4:-87115798 | MS.gene029242:CDS |
TCATATTATCTCAAAGCTGG+AGG | 0.625407 | 1.4:-87114640 | MS.gene029242:CDS |
ACCCCTTTCAAGGCTAGAGG+TGG | 0.626063 | 1.4:-87116691 | MS.gene029242:CDS |
GCTGCCAACTTAGAACGGAA+AGG | 0.630241 | 1.4:+87116132 | None:intergenic |
TGATATTGTACAGGCCGTGG+TGG | 0.630649 | 1.4:-87116808 | MS.gene029242:intron |
CACCACCTCTTCCGCCACCA+CGG | 0.647973 | 1.4:+87116629 | None:intergenic |
AGCCACCAACAACACAAGCA+TGG | 0.648785 | 1.4:+87114152 | None:intergenic |
GGTACCCCTTTCAAGGCTAG+AGG | 0.653441 | 1.4:-87116694 | MS.gene029242:CDS |
AAAATACCCTCATGTCTATG+GGG | 0.663716 | 1.4:+87116574 | None:intergenic |
GTAGAATTCTCCCATCGAAG+TGG | 0.663836 | 1.4:-87115799 | MS.gene029242:CDS |
GGCGCTAAAGTCCTTTACCT+AGG | 0.679116 | 1.4:-87115990 | MS.gene029242:CDS |
ACCCTCCACCAGAACCACCA+CGG | 0.696616 | 1.4:+87116794 | None:intergenic |
GCCACCTCTAGCCTTGAAAG+GGG | 0.697135 | 1.4:+87116690 | None:intergenic |
TGAGAAAGGAAATACCTGCA+CGG | 0.697697 | 1.4:+87116471 | None:intergenic |
GTTCTGTTACCTCGAACAGG+AGG | 0.704487 | 1.4:+87116975 | None:intergenic |
TGAGGCAGTATTCAGCGCTG+AGG | 0.706093 | 1.4:-87114242 | MS.gene029242:CDS |
ATATATTGTCGACACCACCA+AGG | 0.737399 | 1.4:+87116103 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAAAATCATTAAAATAAATT+AGG | + | chr1.4:87116097-87116116 | None:intergenic | 10.0% |
!! | TGAAAATTTATAAACAAAAT+TGG | + | chr1.4:87115842-87115861 | None:intergenic | 10.0% |
!!! | TTTATTTGTTAAAATCAAAT+GGG | - | chr1.4:87114199-87114218 | MS.gene029242:CDS | 10.0% |
!!! | TTTTTAATTTGTTAACTTTT+TGG | - | chr1.4:87116120-87116139 | MS.gene029242:CDS | 10.0% |
!! | ATATGATGTTTATTAAATAG+TGG | - | chr1.4:87116185-87116204 | MS.gene029242:intron | 15.0% |
!! | CATATTATTCTATTTAATAG+TGG | - | chr1.4:87114874-87114893 | MS.gene029242:intron | 15.0% |
!! | TAATGCATAACAAAAAAATA+CGG | + | chr1.4:87116585-87116604 | None:intergenic | 15.0% |
!! | TGTCAATATAATGTATTTAA+AGG | + | chr1.4:87115059-87115078 | None:intergenic | 15.0% |
!!! | CAATTTTATTTTGTATTTGT+AGG | - | chr1.4:87116805-87116824 | MS.gene029242:intron | 15.0% |
!!! | CATTTGATTTTAACAAATAA+AGG | + | chr1.4:87114200-87114219 | None:intergenic | 15.0% |
!!! | CTTTATTTGTTAAAATCAAA+TGG | - | chr1.4:87114198-87114217 | MS.gene029242:CDS | 15.0% |
!!! | TTATATTGACATCTTAATTT+TGG | - | chr1.4:87115068-87115087 | MS.gene029242:intron | 15.0% |
!! | ATGTTATTGTCTAGTAAAAT+AGG | + | chr1.4:87114756-87114775 | None:intergenic | 20.0% |
!! | CGAAAATTTATAAACAAAAC+AGG | + | chr1.4:87115816-87115835 | None:intergenic | 20.0% |
!! | TACTCTTAACTTAAAAAAGA+GGG | + | chr1.4:87115476-87115495 | None:intergenic | 20.0% |
!!! | GTGTAAAATGTAAAATGTTT+TGG | - | chr1.4:87115647-87115666 | MS.gene029242:intron | 20.0% |
!!! | GTTTTATAATGTTTAAGAAC+AGG | - | chr1.4:87116003-87116022 | MS.gene029242:intron | 20.0% |
!!! | TTTTAAAGCTTACTTTCTAT+AGG | - | chr1.4:87116543-87116562 | MS.gene029242:CDS | 20.0% |
! | AACACAAAACATACATATGT+TGG | + | chr1.4:87115225-87115244 | None:intergenic | 25.0% |
! | AATAAACTCTAATTCGAACA+AGG | + | chr1.4:87114160-87114179 | None:intergenic | 25.0% |
! | ACTTCAATAACAATAAACCA+TGG | - | chr1.4:87116604-87116623 | MS.gene029242:CDS | 25.0% |
! | ATAATGTTTAAGAACAGGAT+TGG | - | chr1.4:87116008-87116027 | MS.gene029242:intron | 25.0% |
! | CTTCAATAACAATAAACCAT+GGG | - | chr1.4:87116605-87116624 | MS.gene029242:CDS | 25.0% |
! | GTACTCTTAACTTAAAAAAG+AGG | + | chr1.4:87115477-87115496 | None:intergenic | 25.0% |
! | TAAAATAAATTAGGCTCAAC+TGG | + | chr1.4:87116088-87116107 | None:intergenic | 25.0% |
! | TAATGTTTAAGAACAGGATT+GGG | - | chr1.4:87116009-87116028 | MS.gene029242:intron | 25.0% |
! | TATACTATGTTGATATTTGC+AGG | - | chr1.4:87116412-87116431 | MS.gene029242:intron | 25.0% |
! | TATCTATCCAATGAAGTATA+AGG | + | chr1.4:87116678-87116697 | None:intergenic | 25.0% |
! | TGATGTTTATTAAATAGTGG+TGG | - | chr1.4:87116188-87116207 | MS.gene029242:intron | 25.0% |
!! | ATATGTATGTTTTGTGTTTG+AGG | - | chr1.4:87115227-87115246 | MS.gene029242:intron | 25.0% |
!! | ATTCATTCACCATTTTACAA+AGG | + | chr1.4:87116714-87116733 | None:intergenic | 25.0% |
!!! | ACACTTTGTTATTTCTATCA+AGG | - | chr1.4:87116481-87116500 | MS.gene029242:intron | 25.0% |
!!! | AGCTTTAAAAAACAAGAAAC+TGG | + | chr1.4:87116533-87116552 | None:intergenic | 25.0% |
!!! | ATTTTGACCTTATACTTCAT+TGG | - | chr1.4:87116668-87116687 | MS.gene029242:CDS | 25.0% |
AAATATGTGCATCAGAATCT+CGG | + | chr1.4:87115742-87115761 | None:intergenic | 30.0% | |
AACTGTGGAATCAATACAAT+TGG | + | chr1.4:87116831-87116850 | None:intergenic | 30.0% | |
AATGTTTAAGAACAGGATTG+GGG | - | chr1.4:87116010-87116029 | MS.gene029242:intron | 30.0% | |
AGATTGCAAATCAACAATCA+AGG | + | chr1.4:87116276-87116295 | None:intergenic | 30.0% | |
CAAGGATATAATGCAAGATA+CGG | + | chr1.4:87116258-87116277 | None:intergenic | 30.0% | |
CTAAGACAGAGTATAGAATT+TGG | - | chr1.4:87114940-87114959 | MS.gene029242:intron | 30.0% | |
CTGTAAGTATTAGTTCAACT+TGG | - | chr1.4:87115178-87115197 | MS.gene029242:intron | 30.0% | |
CTTACTTTCTATAGGAATCT+TGG | - | chr1.4:87116551-87116570 | MS.gene029242:CDS | 30.0% | |
TATAACATTAGTACGCTTCT+TGG | + | chr1.4:87115345-87115364 | None:intergenic | 30.0% | |
TGAAGTATAAGGTCAAAATG+AGG | + | chr1.4:87116667-87116686 | None:intergenic | 30.0% | |
TGCATTAGTAGAAAAGTGAA+TGG | + | chr1.4:87115531-87115550 | None:intergenic | 30.0% | |
TGTCTAGCATCTTCAATAAT+TGG | + | chr1.4:87115368-87115387 | None:intergenic | 30.0% | |
TTGTTTCGTTGATATTGTAC+AGG | - | chr1.4:87114281-87114300 | MS.gene029242:intron | 30.0% | |
! | ACCATTTTACAAAGGTTTGA+AGG | + | chr1.4:87116706-87116725 | None:intergenic | 30.0% |
! | ACTGATTTAATGTGTCTTGA+TGG | - | chr1.4:87115590-87115609 | MS.gene029242:intron | 30.0% |
! | AGATTCTGATGCACATATTT+TGG | - | chr1.4:87115742-87115761 | MS.gene029242:CDS | 30.0% |
! | CAAGTTGAACTAATACTTAC+AGG | + | chr1.4:87115180-87115199 | None:intergenic | 30.0% |
! | CCATTTTACAAAGGTTTGAA+GGG | + | chr1.4:87116705-87116724 | None:intergenic | 30.0% |
! | TATTTGCAGGCAAGAATTTT+AGG | - | chr1.4:87116425-87116444 | MS.gene029242:intron | 30.0% |
! | TGCAGTCTCAAAATCATTTT+TGG | - | chr1.4:87116223-87116242 | MS.gene029242:intron | 30.0% |
!! | TTGATTGTTGATTTGCAATC+TGG | - | chr1.4:87116275-87116294 | MS.gene029242:intron | 30.0% |
!! | TTGGTTTTTATCTAGAAACC+TGG | - | chr1.4:87115087-87115106 | MS.gene029242:intron | 30.0% |
!!! | AAAATGATTTTGAGACTGCA+AGG | + | chr1.4:87116223-87116242 | None:intergenic | 30.0% |
!!! | TGTTTTGGTTACTACAACAT+CGG | - | chr1.4:87115662-87115681 | MS.gene029242:intron | 30.0% |
AAAATACCCTCATGTCTATG+GGG | + | chr1.4:87114527-87114546 | None:intergenic | 35.0% | |
AAATTAAACCACACCTGATC+AGG | + | chr1.4:87115452-87115471 | None:intergenic | 35.0% | |
AACTCTAATTCGAACAAGGA+TGG | + | chr1.4:87114156-87114175 | None:intergenic | 35.0% | |
AAGCTGTTTACAATGAGAAG+AGG | - | chr1.4:87114600-87114619 | MS.gene029242:intron | 35.0% | |
AATATGTGCATCAGAATCTC+GGG | + | chr1.4:87115741-87115760 | None:intergenic | 35.0% | |
AATTGATGTGCATCAGAATC+TGG | + | chr1.4:87115955-87115974 | None:intergenic | 35.0% | |
ACACTGACACATAGAATACA+TGG | + | chr1.4:87116388-87116407 | None:intergenic | 35.0% | |
AGCTGATCAATTTAAGCCAA+TGG | - | chr1.4:87116892-87116911 | MS.gene029242:intron | 35.0% | |
AGCTGTTTACAATGAGAAGA+GGG | - | chr1.4:87114601-87114620 | MS.gene029242:intron | 35.0% | |
ATCATCCAAGAAGTCTTGAA+GGG | + | chr1.4:87115713-87115732 | None:intergenic | 35.0% | |
ATGTTTAAGAACAGGATTGG+GGG | - | chr1.4:87116011-87116030 | MS.gene029242:intron | 35.0% | |
ATTCAAAGCACAAACATCCA+AGG | + | chr1.4:87114654-87114673 | None:intergenic | 35.0% | |
ATTGATGTGCATCAGAATCT+GGG | + | chr1.4:87115954-87115973 | None:intergenic | 35.0% | |
CAATAAACCATGGGAAAATG+AGG | - | chr1.4:87116614-87116633 | MS.gene029242:CDS | 35.0% | |
CATGTTCTGTTTATGTAGAC+TGG | - | chr1.4:87115263-87115282 | MS.gene029242:intron | 35.0% | |
CCCTTCAAACCTTTGTAAAA+TGG | - | chr1.4:87116702-87116721 | MS.gene029242:CDS | 35.0% | |
GAAAATACCCTCATGTCTAT+GGG | + | chr1.4:87114528-87114547 | None:intergenic | 35.0% | |
GATGTTAACCAAATAGCAGT+GGG | - | chr1.4:87116354-87116373 | MS.gene029242:intron | 35.0% | |
GCTTCATATTATCTCAAAGC+TGG | - | chr1.4:87116455-87116474 | MS.gene029242:intron | 35.0% | |
GGGAAAATGAGGTTAGTATT+TGG | - | chr1.4:87116625-87116644 | MS.gene029242:CDS | 35.0% | |
TAGGCTCAACTGGAAAAATA+GGG | + | chr1.4:87116078-87116097 | None:intergenic | 35.0% | |
TCATATTATCTCAAAGCTGG+AGG | - | chr1.4:87116458-87116477 | MS.gene029242:intron | 35.0% | |
TCTCATGTGTCTGATATTGT+TGG | - | chr1.4:87115153-87115172 | MS.gene029242:intron | 35.0% | |
TGAAAATACCCTCATGTCTA+TGG | + | chr1.4:87114529-87114548 | None:intergenic | 35.0% | |
TGATGTTAACCAAATAGCAG+TGG | - | chr1.4:87116353-87116372 | MS.gene029242:intron | 35.0% | |
TTAGGCTCAACTGGAAAAAT+AGG | + | chr1.4:87116079-87116098 | None:intergenic | 35.0% | |
! | ATACTAACCTCATTTTCCCA+TGG | + | chr1.4:87116624-87116643 | None:intergenic | 35.0% |
! | GACATATTTTCTGCAGAATG+AGG | - | chr1.4:87114911-87114930 | MS.gene029242:intron | 35.0% |
! | TATTTTCTGCAGAATGAGGA+TGG | - | chr1.4:87114915-87114934 | MS.gene029242:intron | 35.0% |
!! | TAATGACTTGTTTAGGCACA+TGG | - | chr1.4:87116037-87116056 | MS.gene029242:intron | 35.0% |
!!! | GAGGGTATTTTCATTGCTAA+GGG | - | chr1.4:87114536-87114555 | MS.gene029242:intron | 35.0% |
!!! | TCGGCATCTTTTTTCTTCTT+GGG | + | chr1.4:87116980-87116999 | None:intergenic | 35.0% |
!!! | TGAGGGTATTTTCATTGCTA+AGG | - | chr1.4:87114535-87114554 | MS.gene029242:intron | 35.0% |
AACCAACATTCTGTACTTGG+CGG | + | chr1.4:87115393-87115412 | None:intergenic | 40.0% | |
AGTGCATGTGATGAGTTACT+CGG | - | chr1.4:87115895-87115914 | MS.gene029242:intron | 40.0% | |
ATATATTGTCGACACCACCA+AGG | + | chr1.4:87114998-87115017 | None:intergenic | 40.0% | |
CAAACATCCAAGGATGAGAA+AGG | + | chr1.4:87114644-87114663 | None:intergenic | 40.0% | |
CATCATCCAAGAAGTCTTGA+AGG | + | chr1.4:87115714-87115733 | None:intergenic | 40.0% | |
GACTCTTGAACCATTTGAGA+GGG | - | chr1.4:87116922-87116941 | MS.gene029242:intron | 40.0% | |
GGTATTTCCTTTCTCATCCT+TGG | - | chr1.4:87114634-87114653 | MS.gene029242:CDS | 40.0% | |
GTCACTAAGAATCTTGTTCC+TGG | - | chr1.4:87114575-87114594 | MS.gene029242:intron | 40.0% | |
TAGAATTCTCCCATCGAAGT+GGG | - | chr1.4:87115300-87115319 | MS.gene029242:intron | 40.0% | |
TCATCCAAGAAGTCTTGAAG+GGG | + | chr1.4:87115712-87115731 | None:intergenic | 40.0% | |
TCATTGTAAACAGCTTCTCC+AGG | + | chr1.4:87114596-87114615 | None:intergenic | 40.0% | |
TGACTCTTGAACCATTTGAG+AGG | - | chr1.4:87116921-87116940 | MS.gene029242:intron | 40.0% | |
TGAGAAAGGAAATACCTGCA+CGG | + | chr1.4:87114630-87114649 | None:intergenic | 40.0% | |
TGTCAATGTTGATGCTTGCT+TGG | - | chr1.4:87116736-87116755 | MS.gene029242:CDS | 40.0% | |
TTGATGTGCATCAGAATCTG+GGG | + | chr1.4:87115953-87115972 | None:intergenic | 40.0% | |
!! | TTGGTGGTGTCGACAATATA+TGG | - | chr1.4:87114997-87115016 | MS.gene029242:intron | 40.0% |
!!! | CTCGGCATCTTTTTTCTTCT+TGG | + | chr1.4:87116981-87117000 | None:intergenic | 40.0% |
ACCAACATTCTGTACTTGGC+GGG | + | chr1.4:87115392-87115411 | None:intergenic | 45.0% | |
AGATTCGTCCCACTGCTATT+TGG | + | chr1.4:87116365-87116384 | None:intergenic | 45.0% | |
CTGCCAACTTAGAACGGAAA+GGG | + | chr1.4:87114968-87114987 | None:intergenic | 45.0% | |
GATTCCCCTTCAAGACTTCT+TGG | - | chr1.4:87115705-87115724 | MS.gene029242:CDS | 45.0% | |
GCCAACCAACATTCTGTACT+TGG | + | chr1.4:87115396-87115415 | None:intergenic | 45.0% | |
GCCAAGTACAGAATGTTGGT+TGG | - | chr1.4:87115392-87115411 | MS.gene029242:intron | 45.0% | |
GGTGCATGTGATGAGTTACT+CGG | - | chr1.4:87115683-87115702 | MS.gene029242:CDS | 45.0% | |
GTAGAATTCTCCCATCGAAG+TGG | - | chr1.4:87115299-87115318 | MS.gene029242:intron | 45.0% | |
GTTGAACCCCATAGACATGA+GGG | - | chr1.4:87114518-87114537 | MS.gene029242:intron | 45.0% | |
TCAAGAGTCACTTGCTCCAT+TGG | + | chr1.4:87116911-87116930 | None:intergenic | 45.0% | |
TGTGTTCTGTTACCTCGAAC+AGG | + | chr1.4:87114129-87114148 | None:intergenic | 45.0% | |
TGTTGAACCCCATAGACATG+AGG | - | chr1.4:87114517-87114536 | MS.gene029242:intron | 45.0% | |
! | GAACCCTTTCCGTTCTAAGT+TGG | - | chr1.4:87114962-87114981 | MS.gene029242:intron | 45.0% |
! | GTACAGAATGTTGGTTGGCA+TGG | - | chr1.4:87115397-87115416 | MS.gene029242:intron | 45.0% |
!! | AGATAGAGGTACCCCTTTCA+AGG | - | chr1.4:87114397-87114416 | MS.gene029242:intron | 45.0% |
!! | GGGGCAGTAATGACTTGTTT+AGG | - | chr1.4:87116030-87116049 | MS.gene029242:intron | 45.0% |
!!! | TAAATTTTAATTTTTTGTAT+TGG | - | chr1.4:87116773-87116792 | MS.gene029242:CDS | 5.0% |
AGCCACCAACAACACAAGCA+TGG | + | chr1.4:87116949-87116968 | None:intergenic | 50.0% | |
AGGGACCATGCTTGTGTTGT+TGG | - | chr1.4:87116941-87116960 | MS.gene029242:intron | 50.0% | |
AGGTAAAGGACTTTAGCGCC+AGG | + | chr1.4:87115108-87115127 | None:intergenic | 50.0% | |
ATAGAGGAGGTAGAGGAGGT+GGG | - | chr1.4:87114348-87114367 | MS.gene029242:intron | 50.0% | |
CAAGCATGGTCCCTCTCAAA+TGG | + | chr1.4:87116935-87116954 | None:intergenic | 50.0% | |
CAGAAGCAGCTCCTAGGTAA+AGG | + | chr1.4:87115122-87115141 | None:intergenic | 50.0% | |
CAGCAGCTGCCAACTTAGAA+CGG | + | chr1.4:87114974-87114993 | None:intergenic | 50.0% | |
CGTTGATATTGTACAGGCCG+TGG | - | chr1.4:87114287-87114306 | MS.gene029242:intron | 50.0% | |
CTTTACCTAGGAGCTGCTTC+TGG | - | chr1.4:87115120-87115139 | MS.gene029242:intron | 50.0% | |
GCTGCCAACTTAGAACGGAA+AGG | + | chr1.4:87114969-87114988 | None:intergenic | 50.0% | |
GGCGCTAAAGTCCTTTACCT+AGG | - | chr1.4:87115108-87115127 | MS.gene029242:intron | 50.0% | |
GTTCTGTTACCTCGAACAGG+AGG | + | chr1.4:87114126-87114145 | None:intergenic | 50.0% | |
TCCCGCCAAGTACAGAATGT+TGG | - | chr1.4:87115388-87115407 | MS.gene029242:intron | 50.0% | |
TGATATTGTACAGGCCGTGG+TGG | - | chr1.4:87114290-87114309 | MS.gene029242:intron | 50.0% | |
TGATGTTGCTCAGCCTGATC+AGG | - | chr1.4:87115436-87115455 | MS.gene029242:intron | 50.0% | |
TGATTCCACAGTTCCAGCTG+AGG | - | chr1.4:87116838-87116857 | MS.gene029242:intron | 50.0% | |
TGGAATGAAGGGAGGAAGCA+AGG | - | chr1.4:87114490-87114509 | MS.gene029242:intron | 50.0% | |
TTGTTCCAGAAGCAGCTCCT+AGG | + | chr1.4:87115128-87115147 | None:intergenic | 50.0% | |
! | GACCATGCTTGTGTTGTTGG+TGG | - | chr1.4:87116944-87116963 | MS.gene029242:intron | 50.0% |
!! | GGAAGAGGTGGTGGAATGAA+GGG | - | chr1.4:87114479-87114498 | MS.gene029242:intron | 50.0% |
!! | TGGGCGTGACTTGGTCAATA+TGG | - | chr1.4:87115319-87115338 | MS.gene029242:intron | 50.0% |
AAGTTGGCAGCTGCTGTCCT+TGG | - | chr1.4:87114978-87114997 | MS.gene029242:intron | 55.0% | |
ACCCCTTTCAAGGCTAGAGG+TGG | - | chr1.4:87114407-87114426 | MS.gene029242:intron | 55.0% | |
CAAGTCACGCCCACTTCGAT+GGG | + | chr1.4:87115312-87115331 | None:intergenic | 55.0% | |
CCTTTCAAGGCTAGAGGTGG+CGG | - | chr1.4:87114410-87114429 | MS.gene029242:intron | 55.0% | |
GATAGAGGAGGTAGAGGAGG+TGG | - | chr1.4:87114347-87114366 | MS.gene029242:intron | 55.0% | |
GGTACCCCTTTCAAGGCTAG+AGG | - | chr1.4:87114404-87114423 | MS.gene029242:intron | 55.0% | |
GGTGATAGAGGAGGTAGAGG+AGG | - | chr1.4:87114344-87114363 | MS.gene029242:intron | 55.0% | |
GGTGGTGATAGAGGAGGTAG+AGG | - | chr1.4:87114341-87114360 | MS.gene029242:intron | 55.0% | |
TACTGCCTCAGCTGGAACTG+TGG | + | chr1.4:87116846-87116865 | None:intergenic | 55.0% | |
TGAGAAGAGGGTTACCGTGC+AGG | - | chr1.4:87114613-87114632 | MS.gene029242:intron | 55.0% | |
TGAGGCAGTATTCAGCGCTG+AGG | - | chr1.4:87116856-87116875 | MS.gene029242:intron | 55.0% | |
TGGAGGGTTCAGAGGAGGAA+GGG | - | chr1.4:87114319-87114338 | MS.gene029242:intron | 55.0% | |
TTGCTCAGCCTGATCAGGTG+TGG | - | chr1.4:87115441-87115460 | MS.gene029242:intron | 55.0% | |
!! | AGAGGTGGTGGAATGAAGGG+AGG | - | chr1.4:87114482-87114501 | MS.gene029242:intron | 55.0% |
!! | CGCCACCTCTAGCCTTGAAA+GGG | + | chr1.4:87114412-87114431 | None:intergenic | 55.0% |
!! | CGGAAGAGGTGGTGGAATGA+AGG | - | chr1.4:87114478-87114497 | MS.gene029242:intron | 55.0% |
!! | GCCACCTCTAGCCTTGAAAG+GGG | + | chr1.4:87114411-87114430 | None:intergenic | 55.0% |
!!! | AGAGGTGGTTTTGGAGGACG+AGG | - | chr1.4:87114371-87114390 | MS.gene029242:intron | 55.0% |
ACCCTCCACCAGAACCACCA+CGG | + | chr1.4:87114307-87114326 | None:intergenic | 60.0% | |
CCAAGTCACGCCCACTTCGA+TGG | + | chr1.4:87115313-87115332 | None:intergenic | 60.0% | |
CCATCGAAGTGGGCGTGACT+TGG | - | chr1.4:87115310-87115329 | MS.gene029242:intron | 60.0% | |
GCGCTGAATACTGCCTCAGC+TGG | + | chr1.4:87116854-87116873 | None:intergenic | 60.0% | |
GGAAGGGGTGGTGATAGAGG+AGG | - | chr1.4:87114335-87114354 | MS.gene029242:intron | 60.0% | |
GGAGGAAGGGGTGGTGATAG+AGG | - | chr1.4:87114332-87114351 | MS.gene029242:intron | 60.0% | |
GGAGGACGAGGAGGAGATAG+AGG | - | chr1.4:87114383-87114402 | MS.gene029242:intron | 60.0% | |
GGAGGGTTCAGAGGAGGAAG+GGG | - | chr1.4:87114320-87114339 | MS.gene029242:intron | 60.0% | |
GTGGAGGGTTCAGAGGAGGA+AGG | - | chr1.4:87114318-87114337 | MS.gene029242:intron | 60.0% | |
TCTGGTGGAGGGTTCAGAGG+AGG | - | chr1.4:87114314-87114333 | MS.gene029242:intron | 60.0% | |
TGTACAGGCCGTGGTGGTTC+TGG | - | chr1.4:87114296-87114315 | MS.gene029242:intron | 60.0% | |
TTGGCAGCTGCTGTCCTTGG+TGG | - | chr1.4:87114981-87115000 | MS.gene029242:intron | 60.0% | |
! | AAGGCTAGAGGTGGCGGTAG+AGG | - | chr1.4:87114416-87114435 | MS.gene029242:intron | 60.0% |
! | GGAGGTGGGAGAGGTGGTTT+TGG | - | chr1.4:87114362-87114381 | MS.gene029242:intron | 60.0% |
! | GGTTCTGGTGGAGGGTTCAG+AGG | - | chr1.4:87114311-87114330 | MS.gene029242:intron | 60.0% |
!! | CCGCCACCTCTAGCCTTGAA+AGG | + | chr1.4:87114413-87114432 | None:intergenic | 60.0% |
!!! | GGTGGGAGAGGTGGTTTTGG+AGG | - | chr1.4:87114365-87114384 | MS.gene029242:intron | 60.0% |
!!! | GGTGGTTTTGGAGGACGAGG+AGG | - | chr1.4:87114374-87114393 | MS.gene029242:intron | 60.0% |
CACCACCTCTTCCGCCACCA+CGG | + | chr1.4:87114472-87114491 | None:intergenic | 65.0% | |
GGAGGTAGAGGAGGTGGGAG+AGG | - | chr1.4:87114353-87114372 | MS.gene029242:intron | 65.0% | |
GGGTTCAGAGGAGGAAGGGG+TGG | - | chr1.4:87114323-87114342 | MS.gene029242:intron | 65.0% | |
GGTAGAGGAGGTGGGAGAGG+TGG | - | chr1.4:87114356-87114375 | MS.gene029242:intron | 65.0% | |
! | GCTAGAGGTGGCGGTAGAGG+CGG | - | chr1.4:87114419-87114438 | MS.gene029242:intron | 65.0% |
!! | ACAGGCCGTGGTGGTTCTGG+TGG | - | chr1.4:87114299-87114318 | MS.gene029242:intron | 65.0% |
!! | GCCGTGGTGGTTCTGGTGGA+GGG | - | chr1.4:87114303-87114322 | MS.gene029242:intron | 65.0% |
AGAGGCGGAGGAGGCAGAGG+AGG | - | chr1.4:87114434-87114453 | MS.gene029242:intron | 70.0% | |
GGAGGAGGCAGAGGAGGACG+TGG | - | chr1.4:87114440-87114459 | MS.gene029242:intron | 70.0% | |
GGAGGCAGAGGAGGACGTGG+AGG | - | chr1.4:87114443-87114462 | MS.gene029242:intron | 70.0% | |
GGCAGAGGAGGACGTGGAGG+AGG | - | chr1.4:87114446-87114465 | MS.gene029242:intron | 70.0% | |
GGTAGAGGCGGAGGAGGCAG+AGG | - | chr1.4:87114431-87114450 | MS.gene029242:intron | 70.0% | |
! | AGAGGTGGCGGTAGAGGCGG+AGG | - | chr1.4:87114422-87114441 | MS.gene029242:intron | 70.0% |
!! | CGTGGTGGCGGAAGAGGTGG+TGG | - | chr1.4:87114470-87114489 | MS.gene029242:intron | 70.0% |
!! | GGCCGTGGTGGTTCTGGTGG+AGG | - | chr1.4:87114302-87114321 | MS.gene029242:intron | 70.0% |
CGTGGAGGAGGCCGTGGTGG+CGG | - | chr1.4:87114458-87114477 | MS.gene029242:intron | 75.0% | |
GGACGTGGAGGAGGCCGTGG+TGG | - | chr1.4:87114455-87114474 | MS.gene029242:intron | 75.0% | |
GGAGGACGTGGAGGAGGCCG+TGG | - | chr1.4:87114452-87114471 | MS.gene029242:intron | 75.0% | |
! | GGTGGCGGTAGAGGCGGAGG+AGG | - | chr1.4:87114425-87114444 | MS.gene029242:intron | 75.0% |
!! | GGAGGCCGTGGTGGCGGAAG+AGG | - | chr1.4:87114464-87114483 | MS.gene029242:intron | 75.0% |
!! | GGCCGTGGTGGCGGAAGAGG+TGG | - | chr1.4:87114467-87114486 | MS.gene029242:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 87114117 | 87117003 | 87114117 | ID=MS.gene029242 |
chr1.4 | mRNA | 87114117 | 87117003 | 87114117 | ID=MS.gene029242.t1;Parent=MS.gene029242 |
chr1.4 | exon | 87116985 | 87117003 | 87116985 | ID=MS.gene029242.t1.exon1;Parent=MS.gene029242.t1 |
chr1.4 | CDS | 87116985 | 87117003 | 87116985 | ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1 |
chr1.4 | exon | 87116486 | 87116817 | 87116486 | ID=MS.gene029242.t1.exon2;Parent=MS.gene029242.t1 |
chr1.4 | CDS | 87116486 | 87116817 | 87116486 | ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1 |
chr1.4 | exon | 87116098 | 87116193 | 87116098 | ID=MS.gene029242.t1.exon3;Parent=MS.gene029242.t1 |
chr1.4 | CDS | 87116098 | 87116193 | 87116098 | ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1 |
chr1.4 | exon | 87115941 | 87116018 | 87115941 | ID=MS.gene029242.t1.exon4;Parent=MS.gene029242.t1 |
chr1.4 | CDS | 87115941 | 87116018 | 87115941 | ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1 |
chr1.4 | exon | 87115663 | 87115839 | 87115663 | ID=MS.gene029242.t1.exon5;Parent=MS.gene029242.t1 |
chr1.4 | CDS | 87115663 | 87115839 | 87115663 | ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1 |
chr1.4 | exon | 87114618 | 87114686 | 87114618 | ID=MS.gene029242.t1.exon6;Parent=MS.gene029242.t1 |
chr1.4 | CDS | 87114618 | 87114686 | 87114618 | ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1 |
chr1.4 | exon | 87114117 | 87114293 | 87114117 | ID=MS.gene029242.t1.exon7;Parent=MS.gene029242.t1 |
chr1.4 | CDS | 87114117 | 87114293 | 87114117 | ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1 |
Gene Sequence |
Protein sequence |