AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029242


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029242.t1 MTR_1g114000 99.365 315 0 1 1 315 1 313 0.0 616
MS.gene029242.t1 MTR_6g047580 97.510 241 6 0 75 315 69 309 2.40e-175 488
MS.gene029242.t1 MTR_6g047580 93.985 266 16 0 50 315 12 277 6.08e-173 480
MS.gene029242.t1 MTR_6g047580 97.826 184 4 0 75 258 69 252 1.23e-129 370
MS.gene029242.t1 MTR_6g047580 84.293 191 28 1 75 265 69 257 1.06e-112 327
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029242.t1 AT4G25630 90.984 244 22 0 71 314 74 317 9.87e-168 469
MS.gene029242.t1 AT5G52470 90.083 242 24 0 71 312 63 304 2.68e-165 462
MS.gene029242.t1 AT5G52490 71.074 242 70 0 69 310 51 292 2.40e-128 368
MS.gene029242.t1 AT5G52470 93.902 164 10 0 71 234 63 226 3.16e-111 324

Find 111 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATACCCTCATGTCTA+TGG 0.205671 1.4:+87116572 None:intergenic
GGAGGTGGGAGAGGTGGTTT+TGG 0.245696 1.4:-87116736 MS.gene029242:CDS
TGTCTAGCATCTTCAATAAT+TGG 0.265009 1.4:+87115733 None:intergenic
CTTTACCTAGGAGCTGCTTC+TGG 0.296675 1.4:-87115978 MS.gene029242:CDS
TATAACATTAGTACGCTTCT+TGG 0.324454 1.4:+87115756 None:intergenic
CTAAGACAGAGTATAGAATT+TGG 0.324854 1.4:-87116158 MS.gene029242:CDS
TGTACAGGCCGTGGTGGTTC+TGG 0.333264 1.4:-87116802 MS.gene029242:intron
GGAGGAAGGGGTGGTGATAG+AGG 0.351363 1.4:-87116766 MS.gene029242:CDS
TGGGCGTGACTTGGTCAATA+TGG 0.352165 1.4:-87115779 MS.gene029242:CDS
TCAAGAGTCACTTGCTCCAT+TGG 0.352395 1.4:+87114190 None:intergenic
GGCCGTGGTGGTTCTGGTGG+AGG 0.363670 1.4:-87116796 MS.gene029242:CDS
GGAGGCCGTGGTGGCGGAAG+AGG 0.374341 1.4:-87116634 MS.gene029242:CDS
GGAGGTAGAGGAGGTGGGAG+AGG 0.378171 1.4:-87116745 MS.gene029242:CDS
GATAGAGGAGGTAGAGGAGG+TGG 0.391157 1.4:-87116751 MS.gene029242:CDS
CGGAAGAGGTGGTGGAATGA+AGG 0.392714 1.4:-87116620 MS.gene029242:CDS
AGGGACCATGCTTGTGTTGT+TGG 0.394797 1.4:-87114157 MS.gene029242:CDS
GTCACTAAGAATCTTGTTCC+TGG 0.395090 1.4:-87116523 MS.gene029242:CDS
GGCAGAGGAGGACGTGGAGG+AGG 0.399351 1.4:-87116652 MS.gene029242:CDS
TGATGTTGCTCAGCCTGATC+AGG 0.400610 1.4:-87115662 MS.gene029242:intron
AGAGGTGGCGGTAGAGGCGG+AGG 0.402146 1.4:-87116676 MS.gene029242:CDS
GGAGGGTTCAGAGGAGGAAG+GGG 0.404742 1.4:-87116778 MS.gene029242:CDS
CGTGGAGGAGGCCGTGGTGG+CGG 0.406160 1.4:-87116640 MS.gene029242:CDS
GGTAGAGGCGGAGGAGGCAG+AGG 0.408492 1.4:-87116667 MS.gene029242:CDS
AAATTAAACCACACCTGATC+AGG 0.414931 1.4:+87115649 None:intergenic
GGTGGCGGTAGAGGCGGAGG+AGG 0.421527 1.4:-87116673 MS.gene029242:CDS
GGGTTCAGAGGAGGAAGGGG+TGG 0.421936 1.4:-87116775 MS.gene029242:CDS
ACACTTTGTTATTTCTATCA+AGG 0.422492 1.4:-87114617 MS.gene029242:intron
TTGGTGGTGTCGACAATATA+TGG 0.424660 1.4:-87116101 MS.gene029242:CDS
GGAGGACGTGGAGGAGGCCG+TGG 0.430468 1.4:-87116646 MS.gene029242:CDS
TGTGTTCTGTTACCTCGAAC+AGG 0.438947 1.4:+87116972 None:intergenic
GGAGGACGAGGAGGAGATAG+AGG 0.440185 1.4:-87116715 MS.gene029242:CDS
GGAGGAGGCAGAGGAGGACG+TGG 0.443901 1.4:-87116658 MS.gene029242:CDS
AACTGTGGAATCAATACAAT+TGG 0.448320 1.4:+87114270 None:intergenic
GCCAACCAACATTCTGTACT+TGG 0.454773 1.4:+87115705 None:intergenic
CCATCGAAGTGGGCGTGACT+TGG 0.458744 1.4:-87115788 MS.gene029242:CDS
ATAGAGGAGGTAGAGGAGGT+GGG 0.464408 1.4:-87116750 MS.gene029242:CDS
CGTGGTGGCGGAAGAGGTGG+TGG 0.465952 1.4:-87116628 MS.gene029242:CDS
GCTAGAGGTGGCGGTAGAGG+CGG 0.468529 1.4:-87116679 MS.gene029242:CDS
AAGGCTAGAGGTGGCGGTAG+AGG 0.468910 1.4:-87116682 MS.gene029242:CDS
TCTCATGTGTCTGATATTGT+TGG 0.470006 1.4:-87115945 MS.gene029242:CDS
AGATAGAGGTACCCCTTTCA+AGG 0.470760 1.4:-87116701 MS.gene029242:CDS
AAGTTGGCAGCTGCTGTCCT+TGG 0.472296 1.4:-87116120 MS.gene029242:CDS
GCCGTGGTGGTTCTGGTGGA+GGG 0.473475 1.4:-87116795 MS.gene029242:CDS
GGTAGAGGAGGTGGGAGAGG+TGG 0.474660 1.4:-87116742 MS.gene029242:CDS
CGCCACCTCTAGCCTTGAAA+GGG 0.477576 1.4:+87116689 None:intergenic
GAAAATACCCTCATGTCTAT+GGG 0.477789 1.4:+87116573 None:intergenic
CCAAGTCACGCCCACTTCGA+TGG 0.482871 1.4:+87115788 None:intergenic
AGAGGCGGAGGAGGCAGAGG+AGG 0.484426 1.4:-87116664 MS.gene029242:CDS
GGTGGTGATAGAGGAGGTAG+AGG 0.485873 1.4:-87116757 MS.gene029242:CDS
GGCCGTGGTGGCGGAAGAGG+TGG 0.485933 1.4:-87116631 MS.gene029242:CDS
GGAAGAGGTGGTGGAATGAA+GGG 0.492329 1.4:-87116619 MS.gene029242:CDS
CAAGCATGGTCCCTCTCAAA+TGG 0.492656 1.4:+87114166 None:intergenic
GACCATGCTTGTGTTGTTGG+TGG 0.497588 1.4:-87114154 MS.gene029242:CDS
TGAGAAGAGGGTTACCGTGC+AGG 0.499140 1.4:-87116485 MS.gene029242:intron
ACCAACATTCTGTACTTGGC+GGG 0.501411 1.4:+87115709 None:intergenic
GCGCTGAATACTGCCTCAGC+TGG 0.502016 1.4:+87114247 None:intergenic
GCTTCATATTATCTCAAAGC+TGG 0.503141 1.4:-87114643 MS.gene029242:CDS
GGTGATAGAGGAGGTAGAGG+AGG 0.504276 1.4:-87116754 MS.gene029242:CDS
CAGAAGCAGCTCCTAGGTAA+AGG 0.506248 1.4:+87115979 None:intergenic
CTCAAAATATAGAGGCTACT+CGG 0.506705 1.4:+87114102 None:intergenic
CCGCCACCTCTAGCCTTGAA+AGG 0.514108 1.4:+87116688 None:intergenic
TTGGCAGCTGCTGTCCTTGG+TGG 0.517332 1.4:-87116117 MS.gene029242:CDS
AGCTGATCAATTTAAGCCAA+TGG 0.520445 1.4:-87114206 MS.gene029242:CDS
TTGTTCCAGAAGCAGCTCCT+AGG 0.523899 1.4:+87115973 None:intergenic
TCATTGTAAACAGCTTCTCC+AGG 0.524882 1.4:+87116505 None:intergenic
AACCAACATTCTGTACTTGG+CGG 0.526725 1.4:+87115708 None:intergenic
GGAGGCAGAGGAGGACGTGG+AGG 0.526880 1.4:-87116655 MS.gene029242:CDS
TGGAATGAAGGGAGGAAGCA+AGG 0.532988 1.4:-87116608 MS.gene029242:CDS
ACAATGGCTCCTCCTGTTCG+AGG 0.533054 1.4:-87116984 MS.gene029242:intron
TGGAGGGTTCAGAGGAGGAA+GGG 0.537472 1.4:-87116779 MS.gene029242:CDS
GAACCCTTTCCGTTCTAAGT+TGG 0.539930 1.4:-87116136 MS.gene029242:CDS
GTACAGAATGTTGGTTGGCA+TGG 0.545696 1.4:-87115701 MS.gene029242:CDS
CCTTTCAAGGCTAGAGGTGG+CGG 0.550070 1.4:-87116688 MS.gene029242:CDS
TACTGCCTCAGCTGGAACTG+TGG 0.556438 1.4:+87114255 None:intergenic
CTGCCAACTTAGAACGGAAA+GGG 0.557631 1.4:+87116133 None:intergenic
AGGTAAAGGACTTTAGCGCC+AGG 0.557851 1.4:+87115993 None:intergenic
CAAGTCACGCCCACTTCGAT+GGG 0.558873 1.4:+87115789 None:intergenic
ACAGGCCGTGGTGGTTCTGG+TGG 0.566444 1.4:-87116799 MS.gene029242:intron
GACTCTTGAACCATTTGAGA+GGG 0.572197 1.4:-87114176 MS.gene029242:CDS
GTGGAGGGTTCAGAGGAGGA+AGG 0.574068 1.4:-87116780 MS.gene029242:CDS
GGTTCTGGTGGAGGGTTCAG+AGG 0.575244 1.4:-87116787 MS.gene029242:CDS
AGAGGTGGTGGAATGAAGGG+AGG 0.576093 1.4:-87116616 MS.gene029242:CDS
GGACGTGGAGGAGGCCGTGG+TGG 0.585474 1.4:-87116643 MS.gene029242:CDS
CAGCAGCTGCCAACTTAGAA+CGG 0.593341 1.4:+87116127 None:intergenic
TCTGGTGGAGGGTTCAGAGG+AGG 0.598909 1.4:-87116784 MS.gene029242:CDS
GGAAGGGGTGGTGATAGAGG+AGG 0.599693 1.4:-87116763 MS.gene029242:CDS
AAGCTGTTTACAATGAGAAG+AGG 0.601232 1.4:-87116498 MS.gene029242:CDS
AGCTGTTTACAATGAGAAGA+GGG 0.603845 1.4:-87116497 MS.gene029242:CDS
GTTGAACCCCATAGACATGA+GGG 0.606951 1.4:-87116580 MS.gene029242:CDS
TGATTCCACAGTTCCAGCTG+AGG 0.607935 1.4:-87114260 MS.gene029242:CDS
TGACTCTTGAACCATTTGAG+AGG 0.609035 1.4:-87114177 MS.gene029242:CDS
GCCAAGTACAGAATGTTGGT+TGG 0.614552 1.4:-87115706 MS.gene029242:CDS
TCCCGCCAAGTACAGAATGT+TGG 0.621000 1.4:-87115710 MS.gene029242:CDS
TGTTGAACCCCATAGACATG+AGG 0.622170 1.4:-87116581 MS.gene029242:CDS
TAGAATTCTCCCATCGAAGT+GGG 0.624110 1.4:-87115798 MS.gene029242:CDS
TCATATTATCTCAAAGCTGG+AGG 0.625407 1.4:-87114640 MS.gene029242:CDS
ACCCCTTTCAAGGCTAGAGG+TGG 0.626063 1.4:-87116691 MS.gene029242:CDS
GCTGCCAACTTAGAACGGAA+AGG 0.630241 1.4:+87116132 None:intergenic
TGATATTGTACAGGCCGTGG+TGG 0.630649 1.4:-87116808 MS.gene029242:intron
CACCACCTCTTCCGCCACCA+CGG 0.647973 1.4:+87116629 None:intergenic
AGCCACCAACAACACAAGCA+TGG 0.648785 1.4:+87114152 None:intergenic
GGTACCCCTTTCAAGGCTAG+AGG 0.653441 1.4:-87116694 MS.gene029242:CDS
AAAATACCCTCATGTCTATG+GGG 0.663716 1.4:+87116574 None:intergenic
GTAGAATTCTCCCATCGAAG+TGG 0.663836 1.4:-87115799 MS.gene029242:CDS
GGCGCTAAAGTCCTTTACCT+AGG 0.679116 1.4:-87115990 MS.gene029242:CDS
ACCCTCCACCAGAACCACCA+CGG 0.696616 1.4:+87116794 None:intergenic
GCCACCTCTAGCCTTGAAAG+GGG 0.697135 1.4:+87116690 None:intergenic
TGAGAAAGGAAATACCTGCA+CGG 0.697697 1.4:+87116471 None:intergenic
GTTCTGTTACCTCGAACAGG+AGG 0.704487 1.4:+87116975 None:intergenic
TGAGGCAGTATTCAGCGCTG+AGG 0.706093 1.4:-87114242 MS.gene029242:CDS
ATATATTGTCGACACCACCA+AGG 0.737399 1.4:+87116103 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATCATTAAAATAAATT+AGG + chr1.4:87116097-87116116 None:intergenic 10.0%
!! TGAAAATTTATAAACAAAAT+TGG + chr1.4:87115842-87115861 None:intergenic 10.0%
!!! TTTATTTGTTAAAATCAAAT+GGG - chr1.4:87114199-87114218 MS.gene029242:CDS 10.0%
!!! TTTTTAATTTGTTAACTTTT+TGG - chr1.4:87116120-87116139 MS.gene029242:CDS 10.0%
!! ATATGATGTTTATTAAATAG+TGG - chr1.4:87116185-87116204 MS.gene029242:intron 15.0%
!! CATATTATTCTATTTAATAG+TGG - chr1.4:87114874-87114893 MS.gene029242:intron 15.0%
!! TAATGCATAACAAAAAAATA+CGG + chr1.4:87116585-87116604 None:intergenic 15.0%
!! TGTCAATATAATGTATTTAA+AGG + chr1.4:87115059-87115078 None:intergenic 15.0%
!!! CAATTTTATTTTGTATTTGT+AGG - chr1.4:87116805-87116824 MS.gene029242:intron 15.0%
!!! CATTTGATTTTAACAAATAA+AGG + chr1.4:87114200-87114219 None:intergenic 15.0%
!!! CTTTATTTGTTAAAATCAAA+TGG - chr1.4:87114198-87114217 MS.gene029242:CDS 15.0%
!!! TTATATTGACATCTTAATTT+TGG - chr1.4:87115068-87115087 MS.gene029242:intron 15.0%
!! ATGTTATTGTCTAGTAAAAT+AGG + chr1.4:87114756-87114775 None:intergenic 20.0%
!! CGAAAATTTATAAACAAAAC+AGG + chr1.4:87115816-87115835 None:intergenic 20.0%
!! TACTCTTAACTTAAAAAAGA+GGG + chr1.4:87115476-87115495 None:intergenic 20.0%
!!! GTGTAAAATGTAAAATGTTT+TGG - chr1.4:87115647-87115666 MS.gene029242:intron 20.0%
!!! GTTTTATAATGTTTAAGAAC+AGG - chr1.4:87116003-87116022 MS.gene029242:intron 20.0%
!!! TTTTAAAGCTTACTTTCTAT+AGG - chr1.4:87116543-87116562 MS.gene029242:CDS 20.0%
! AACACAAAACATACATATGT+TGG + chr1.4:87115225-87115244 None:intergenic 25.0%
! AATAAACTCTAATTCGAACA+AGG + chr1.4:87114160-87114179 None:intergenic 25.0%
! ACTTCAATAACAATAAACCA+TGG - chr1.4:87116604-87116623 MS.gene029242:CDS 25.0%
! ATAATGTTTAAGAACAGGAT+TGG - chr1.4:87116008-87116027 MS.gene029242:intron 25.0%
! CTTCAATAACAATAAACCAT+GGG - chr1.4:87116605-87116624 MS.gene029242:CDS 25.0%
! GTACTCTTAACTTAAAAAAG+AGG + chr1.4:87115477-87115496 None:intergenic 25.0%
! TAAAATAAATTAGGCTCAAC+TGG + chr1.4:87116088-87116107 None:intergenic 25.0%
! TAATGTTTAAGAACAGGATT+GGG - chr1.4:87116009-87116028 MS.gene029242:intron 25.0%
! TATACTATGTTGATATTTGC+AGG - chr1.4:87116412-87116431 MS.gene029242:intron 25.0%
! TATCTATCCAATGAAGTATA+AGG + chr1.4:87116678-87116697 None:intergenic 25.0%
! TGATGTTTATTAAATAGTGG+TGG - chr1.4:87116188-87116207 MS.gene029242:intron 25.0%
!! ATATGTATGTTTTGTGTTTG+AGG - chr1.4:87115227-87115246 MS.gene029242:intron 25.0%
!! ATTCATTCACCATTTTACAA+AGG + chr1.4:87116714-87116733 None:intergenic 25.0%
!!! ACACTTTGTTATTTCTATCA+AGG - chr1.4:87116481-87116500 MS.gene029242:intron 25.0%
!!! AGCTTTAAAAAACAAGAAAC+TGG + chr1.4:87116533-87116552 None:intergenic 25.0%
!!! ATTTTGACCTTATACTTCAT+TGG - chr1.4:87116668-87116687 MS.gene029242:CDS 25.0%
AAATATGTGCATCAGAATCT+CGG + chr1.4:87115742-87115761 None:intergenic 30.0%
AACTGTGGAATCAATACAAT+TGG + chr1.4:87116831-87116850 None:intergenic 30.0%
AATGTTTAAGAACAGGATTG+GGG - chr1.4:87116010-87116029 MS.gene029242:intron 30.0%
AGATTGCAAATCAACAATCA+AGG + chr1.4:87116276-87116295 None:intergenic 30.0%
CAAGGATATAATGCAAGATA+CGG + chr1.4:87116258-87116277 None:intergenic 30.0%
CTAAGACAGAGTATAGAATT+TGG - chr1.4:87114940-87114959 MS.gene029242:intron 30.0%
CTGTAAGTATTAGTTCAACT+TGG - chr1.4:87115178-87115197 MS.gene029242:intron 30.0%
CTTACTTTCTATAGGAATCT+TGG - chr1.4:87116551-87116570 MS.gene029242:CDS 30.0%
TATAACATTAGTACGCTTCT+TGG + chr1.4:87115345-87115364 None:intergenic 30.0%
TGAAGTATAAGGTCAAAATG+AGG + chr1.4:87116667-87116686 None:intergenic 30.0%
TGCATTAGTAGAAAAGTGAA+TGG + chr1.4:87115531-87115550 None:intergenic 30.0%
TGTCTAGCATCTTCAATAAT+TGG + chr1.4:87115368-87115387 None:intergenic 30.0%
TTGTTTCGTTGATATTGTAC+AGG - chr1.4:87114281-87114300 MS.gene029242:intron 30.0%
! ACCATTTTACAAAGGTTTGA+AGG + chr1.4:87116706-87116725 None:intergenic 30.0%
! ACTGATTTAATGTGTCTTGA+TGG - chr1.4:87115590-87115609 MS.gene029242:intron 30.0%
! AGATTCTGATGCACATATTT+TGG - chr1.4:87115742-87115761 MS.gene029242:CDS 30.0%
! CAAGTTGAACTAATACTTAC+AGG + chr1.4:87115180-87115199 None:intergenic 30.0%
! CCATTTTACAAAGGTTTGAA+GGG + chr1.4:87116705-87116724 None:intergenic 30.0%
! TATTTGCAGGCAAGAATTTT+AGG - chr1.4:87116425-87116444 MS.gene029242:intron 30.0%
! TGCAGTCTCAAAATCATTTT+TGG - chr1.4:87116223-87116242 MS.gene029242:intron 30.0%
!! TTGATTGTTGATTTGCAATC+TGG - chr1.4:87116275-87116294 MS.gene029242:intron 30.0%
!! TTGGTTTTTATCTAGAAACC+TGG - chr1.4:87115087-87115106 MS.gene029242:intron 30.0%
!!! AAAATGATTTTGAGACTGCA+AGG + chr1.4:87116223-87116242 None:intergenic 30.0%
!!! TGTTTTGGTTACTACAACAT+CGG - chr1.4:87115662-87115681 MS.gene029242:intron 30.0%
AAAATACCCTCATGTCTATG+GGG + chr1.4:87114527-87114546 None:intergenic 35.0%
AAATTAAACCACACCTGATC+AGG + chr1.4:87115452-87115471 None:intergenic 35.0%
AACTCTAATTCGAACAAGGA+TGG + chr1.4:87114156-87114175 None:intergenic 35.0%
AAGCTGTTTACAATGAGAAG+AGG - chr1.4:87114600-87114619 MS.gene029242:intron 35.0%
AATATGTGCATCAGAATCTC+GGG + chr1.4:87115741-87115760 None:intergenic 35.0%
AATTGATGTGCATCAGAATC+TGG + chr1.4:87115955-87115974 None:intergenic 35.0%
ACACTGACACATAGAATACA+TGG + chr1.4:87116388-87116407 None:intergenic 35.0%
AGCTGATCAATTTAAGCCAA+TGG - chr1.4:87116892-87116911 MS.gene029242:intron 35.0%
AGCTGTTTACAATGAGAAGA+GGG - chr1.4:87114601-87114620 MS.gene029242:intron 35.0%
ATCATCCAAGAAGTCTTGAA+GGG + chr1.4:87115713-87115732 None:intergenic 35.0%
ATGTTTAAGAACAGGATTGG+GGG - chr1.4:87116011-87116030 MS.gene029242:intron 35.0%
ATTCAAAGCACAAACATCCA+AGG + chr1.4:87114654-87114673 None:intergenic 35.0%
ATTGATGTGCATCAGAATCT+GGG + chr1.4:87115954-87115973 None:intergenic 35.0%
CAATAAACCATGGGAAAATG+AGG - chr1.4:87116614-87116633 MS.gene029242:CDS 35.0%
CATGTTCTGTTTATGTAGAC+TGG - chr1.4:87115263-87115282 MS.gene029242:intron 35.0%
CCCTTCAAACCTTTGTAAAA+TGG - chr1.4:87116702-87116721 MS.gene029242:CDS 35.0%
GAAAATACCCTCATGTCTAT+GGG + chr1.4:87114528-87114547 None:intergenic 35.0%
GATGTTAACCAAATAGCAGT+GGG - chr1.4:87116354-87116373 MS.gene029242:intron 35.0%
GCTTCATATTATCTCAAAGC+TGG - chr1.4:87116455-87116474 MS.gene029242:intron 35.0%
GGGAAAATGAGGTTAGTATT+TGG - chr1.4:87116625-87116644 MS.gene029242:CDS 35.0%
TAGGCTCAACTGGAAAAATA+GGG + chr1.4:87116078-87116097 None:intergenic 35.0%
TCATATTATCTCAAAGCTGG+AGG - chr1.4:87116458-87116477 MS.gene029242:intron 35.0%
TCTCATGTGTCTGATATTGT+TGG - chr1.4:87115153-87115172 MS.gene029242:intron 35.0%
TGAAAATACCCTCATGTCTA+TGG + chr1.4:87114529-87114548 None:intergenic 35.0%
TGATGTTAACCAAATAGCAG+TGG - chr1.4:87116353-87116372 MS.gene029242:intron 35.0%
TTAGGCTCAACTGGAAAAAT+AGG + chr1.4:87116079-87116098 None:intergenic 35.0%
! ATACTAACCTCATTTTCCCA+TGG + chr1.4:87116624-87116643 None:intergenic 35.0%
! GACATATTTTCTGCAGAATG+AGG - chr1.4:87114911-87114930 MS.gene029242:intron 35.0%
! TATTTTCTGCAGAATGAGGA+TGG - chr1.4:87114915-87114934 MS.gene029242:intron 35.0%
!! TAATGACTTGTTTAGGCACA+TGG - chr1.4:87116037-87116056 MS.gene029242:intron 35.0%
!!! GAGGGTATTTTCATTGCTAA+GGG - chr1.4:87114536-87114555 MS.gene029242:intron 35.0%
!!! TCGGCATCTTTTTTCTTCTT+GGG + chr1.4:87116980-87116999 None:intergenic 35.0%
!!! TGAGGGTATTTTCATTGCTA+AGG - chr1.4:87114535-87114554 MS.gene029242:intron 35.0%
AACCAACATTCTGTACTTGG+CGG + chr1.4:87115393-87115412 None:intergenic 40.0%
AGTGCATGTGATGAGTTACT+CGG - chr1.4:87115895-87115914 MS.gene029242:intron 40.0%
ATATATTGTCGACACCACCA+AGG + chr1.4:87114998-87115017 None:intergenic 40.0%
CAAACATCCAAGGATGAGAA+AGG + chr1.4:87114644-87114663 None:intergenic 40.0%
CATCATCCAAGAAGTCTTGA+AGG + chr1.4:87115714-87115733 None:intergenic 40.0%
GACTCTTGAACCATTTGAGA+GGG - chr1.4:87116922-87116941 MS.gene029242:intron 40.0%
GGTATTTCCTTTCTCATCCT+TGG - chr1.4:87114634-87114653 MS.gene029242:CDS 40.0%
GTCACTAAGAATCTTGTTCC+TGG - chr1.4:87114575-87114594 MS.gene029242:intron 40.0%
TAGAATTCTCCCATCGAAGT+GGG - chr1.4:87115300-87115319 MS.gene029242:intron 40.0%
TCATCCAAGAAGTCTTGAAG+GGG + chr1.4:87115712-87115731 None:intergenic 40.0%
TCATTGTAAACAGCTTCTCC+AGG + chr1.4:87114596-87114615 None:intergenic 40.0%
TGACTCTTGAACCATTTGAG+AGG - chr1.4:87116921-87116940 MS.gene029242:intron 40.0%
TGAGAAAGGAAATACCTGCA+CGG + chr1.4:87114630-87114649 None:intergenic 40.0%
TGTCAATGTTGATGCTTGCT+TGG - chr1.4:87116736-87116755 MS.gene029242:CDS 40.0%
TTGATGTGCATCAGAATCTG+GGG + chr1.4:87115953-87115972 None:intergenic 40.0%
!! TTGGTGGTGTCGACAATATA+TGG - chr1.4:87114997-87115016 MS.gene029242:intron 40.0%
!!! CTCGGCATCTTTTTTCTTCT+TGG + chr1.4:87116981-87117000 None:intergenic 40.0%
ACCAACATTCTGTACTTGGC+GGG + chr1.4:87115392-87115411 None:intergenic 45.0%
AGATTCGTCCCACTGCTATT+TGG + chr1.4:87116365-87116384 None:intergenic 45.0%
CTGCCAACTTAGAACGGAAA+GGG + chr1.4:87114968-87114987 None:intergenic 45.0%
GATTCCCCTTCAAGACTTCT+TGG - chr1.4:87115705-87115724 MS.gene029242:CDS 45.0%
GCCAACCAACATTCTGTACT+TGG + chr1.4:87115396-87115415 None:intergenic 45.0%
GCCAAGTACAGAATGTTGGT+TGG - chr1.4:87115392-87115411 MS.gene029242:intron 45.0%
GGTGCATGTGATGAGTTACT+CGG - chr1.4:87115683-87115702 MS.gene029242:CDS 45.0%
GTAGAATTCTCCCATCGAAG+TGG - chr1.4:87115299-87115318 MS.gene029242:intron 45.0%
GTTGAACCCCATAGACATGA+GGG - chr1.4:87114518-87114537 MS.gene029242:intron 45.0%
TCAAGAGTCACTTGCTCCAT+TGG + chr1.4:87116911-87116930 None:intergenic 45.0%
TGTGTTCTGTTACCTCGAAC+AGG + chr1.4:87114129-87114148 None:intergenic 45.0%
TGTTGAACCCCATAGACATG+AGG - chr1.4:87114517-87114536 MS.gene029242:intron 45.0%
! GAACCCTTTCCGTTCTAAGT+TGG - chr1.4:87114962-87114981 MS.gene029242:intron 45.0%
! GTACAGAATGTTGGTTGGCA+TGG - chr1.4:87115397-87115416 MS.gene029242:intron 45.0%
!! AGATAGAGGTACCCCTTTCA+AGG - chr1.4:87114397-87114416 MS.gene029242:intron 45.0%
!! GGGGCAGTAATGACTTGTTT+AGG - chr1.4:87116030-87116049 MS.gene029242:intron 45.0%
!!! TAAATTTTAATTTTTTGTAT+TGG - chr1.4:87116773-87116792 MS.gene029242:CDS 5.0%
AGCCACCAACAACACAAGCA+TGG + chr1.4:87116949-87116968 None:intergenic 50.0%
AGGGACCATGCTTGTGTTGT+TGG - chr1.4:87116941-87116960 MS.gene029242:intron 50.0%
AGGTAAAGGACTTTAGCGCC+AGG + chr1.4:87115108-87115127 None:intergenic 50.0%
ATAGAGGAGGTAGAGGAGGT+GGG - chr1.4:87114348-87114367 MS.gene029242:intron 50.0%
CAAGCATGGTCCCTCTCAAA+TGG + chr1.4:87116935-87116954 None:intergenic 50.0%
CAGAAGCAGCTCCTAGGTAA+AGG + chr1.4:87115122-87115141 None:intergenic 50.0%
CAGCAGCTGCCAACTTAGAA+CGG + chr1.4:87114974-87114993 None:intergenic 50.0%
CGTTGATATTGTACAGGCCG+TGG - chr1.4:87114287-87114306 MS.gene029242:intron 50.0%
CTTTACCTAGGAGCTGCTTC+TGG - chr1.4:87115120-87115139 MS.gene029242:intron 50.0%
GCTGCCAACTTAGAACGGAA+AGG + chr1.4:87114969-87114988 None:intergenic 50.0%
GGCGCTAAAGTCCTTTACCT+AGG - chr1.4:87115108-87115127 MS.gene029242:intron 50.0%
GTTCTGTTACCTCGAACAGG+AGG + chr1.4:87114126-87114145 None:intergenic 50.0%
TCCCGCCAAGTACAGAATGT+TGG - chr1.4:87115388-87115407 MS.gene029242:intron 50.0%
TGATATTGTACAGGCCGTGG+TGG - chr1.4:87114290-87114309 MS.gene029242:intron 50.0%
TGATGTTGCTCAGCCTGATC+AGG - chr1.4:87115436-87115455 MS.gene029242:intron 50.0%
TGATTCCACAGTTCCAGCTG+AGG - chr1.4:87116838-87116857 MS.gene029242:intron 50.0%
TGGAATGAAGGGAGGAAGCA+AGG - chr1.4:87114490-87114509 MS.gene029242:intron 50.0%
TTGTTCCAGAAGCAGCTCCT+AGG + chr1.4:87115128-87115147 None:intergenic 50.0%
! GACCATGCTTGTGTTGTTGG+TGG - chr1.4:87116944-87116963 MS.gene029242:intron 50.0%
!! GGAAGAGGTGGTGGAATGAA+GGG - chr1.4:87114479-87114498 MS.gene029242:intron 50.0%
!! TGGGCGTGACTTGGTCAATA+TGG - chr1.4:87115319-87115338 MS.gene029242:intron 50.0%
AAGTTGGCAGCTGCTGTCCT+TGG - chr1.4:87114978-87114997 MS.gene029242:intron 55.0%
ACCCCTTTCAAGGCTAGAGG+TGG - chr1.4:87114407-87114426 MS.gene029242:intron 55.0%
CAAGTCACGCCCACTTCGAT+GGG + chr1.4:87115312-87115331 None:intergenic 55.0%
CCTTTCAAGGCTAGAGGTGG+CGG - chr1.4:87114410-87114429 MS.gene029242:intron 55.0%
GATAGAGGAGGTAGAGGAGG+TGG - chr1.4:87114347-87114366 MS.gene029242:intron 55.0%
GGTACCCCTTTCAAGGCTAG+AGG - chr1.4:87114404-87114423 MS.gene029242:intron 55.0%
GGTGATAGAGGAGGTAGAGG+AGG - chr1.4:87114344-87114363 MS.gene029242:intron 55.0%
GGTGGTGATAGAGGAGGTAG+AGG - chr1.4:87114341-87114360 MS.gene029242:intron 55.0%
TACTGCCTCAGCTGGAACTG+TGG + chr1.4:87116846-87116865 None:intergenic 55.0%
TGAGAAGAGGGTTACCGTGC+AGG - chr1.4:87114613-87114632 MS.gene029242:intron 55.0%
TGAGGCAGTATTCAGCGCTG+AGG - chr1.4:87116856-87116875 MS.gene029242:intron 55.0%
TGGAGGGTTCAGAGGAGGAA+GGG - chr1.4:87114319-87114338 MS.gene029242:intron 55.0%
TTGCTCAGCCTGATCAGGTG+TGG - chr1.4:87115441-87115460 MS.gene029242:intron 55.0%
!! AGAGGTGGTGGAATGAAGGG+AGG - chr1.4:87114482-87114501 MS.gene029242:intron 55.0%
!! CGCCACCTCTAGCCTTGAAA+GGG + chr1.4:87114412-87114431 None:intergenic 55.0%
!! CGGAAGAGGTGGTGGAATGA+AGG - chr1.4:87114478-87114497 MS.gene029242:intron 55.0%
!! GCCACCTCTAGCCTTGAAAG+GGG + chr1.4:87114411-87114430 None:intergenic 55.0%
!!! AGAGGTGGTTTTGGAGGACG+AGG - chr1.4:87114371-87114390 MS.gene029242:intron 55.0%
ACCCTCCACCAGAACCACCA+CGG + chr1.4:87114307-87114326 None:intergenic 60.0%
CCAAGTCACGCCCACTTCGA+TGG + chr1.4:87115313-87115332 None:intergenic 60.0%
CCATCGAAGTGGGCGTGACT+TGG - chr1.4:87115310-87115329 MS.gene029242:intron 60.0%
GCGCTGAATACTGCCTCAGC+TGG + chr1.4:87116854-87116873 None:intergenic 60.0%
GGAAGGGGTGGTGATAGAGG+AGG - chr1.4:87114335-87114354 MS.gene029242:intron 60.0%
GGAGGAAGGGGTGGTGATAG+AGG - chr1.4:87114332-87114351 MS.gene029242:intron 60.0%
GGAGGACGAGGAGGAGATAG+AGG - chr1.4:87114383-87114402 MS.gene029242:intron 60.0%
GGAGGGTTCAGAGGAGGAAG+GGG - chr1.4:87114320-87114339 MS.gene029242:intron 60.0%
GTGGAGGGTTCAGAGGAGGA+AGG - chr1.4:87114318-87114337 MS.gene029242:intron 60.0%
TCTGGTGGAGGGTTCAGAGG+AGG - chr1.4:87114314-87114333 MS.gene029242:intron 60.0%
TGTACAGGCCGTGGTGGTTC+TGG - chr1.4:87114296-87114315 MS.gene029242:intron 60.0%
TTGGCAGCTGCTGTCCTTGG+TGG - chr1.4:87114981-87115000 MS.gene029242:intron 60.0%
! AAGGCTAGAGGTGGCGGTAG+AGG - chr1.4:87114416-87114435 MS.gene029242:intron 60.0%
! GGAGGTGGGAGAGGTGGTTT+TGG - chr1.4:87114362-87114381 MS.gene029242:intron 60.0%
! GGTTCTGGTGGAGGGTTCAG+AGG - chr1.4:87114311-87114330 MS.gene029242:intron 60.0%
!! CCGCCACCTCTAGCCTTGAA+AGG + chr1.4:87114413-87114432 None:intergenic 60.0%
!!! GGTGGGAGAGGTGGTTTTGG+AGG - chr1.4:87114365-87114384 MS.gene029242:intron 60.0%
!!! GGTGGTTTTGGAGGACGAGG+AGG - chr1.4:87114374-87114393 MS.gene029242:intron 60.0%
CACCACCTCTTCCGCCACCA+CGG + chr1.4:87114472-87114491 None:intergenic 65.0%
GGAGGTAGAGGAGGTGGGAG+AGG - chr1.4:87114353-87114372 MS.gene029242:intron 65.0%
GGGTTCAGAGGAGGAAGGGG+TGG - chr1.4:87114323-87114342 MS.gene029242:intron 65.0%
GGTAGAGGAGGTGGGAGAGG+TGG - chr1.4:87114356-87114375 MS.gene029242:intron 65.0%
! GCTAGAGGTGGCGGTAGAGG+CGG - chr1.4:87114419-87114438 MS.gene029242:intron 65.0%
!! ACAGGCCGTGGTGGTTCTGG+TGG - chr1.4:87114299-87114318 MS.gene029242:intron 65.0%
!! GCCGTGGTGGTTCTGGTGGA+GGG - chr1.4:87114303-87114322 MS.gene029242:intron 65.0%
AGAGGCGGAGGAGGCAGAGG+AGG - chr1.4:87114434-87114453 MS.gene029242:intron 70.0%
GGAGGAGGCAGAGGAGGACG+TGG - chr1.4:87114440-87114459 MS.gene029242:intron 70.0%
GGAGGCAGAGGAGGACGTGG+AGG - chr1.4:87114443-87114462 MS.gene029242:intron 70.0%
GGCAGAGGAGGACGTGGAGG+AGG - chr1.4:87114446-87114465 MS.gene029242:intron 70.0%
GGTAGAGGCGGAGGAGGCAG+AGG - chr1.4:87114431-87114450 MS.gene029242:intron 70.0%
! AGAGGTGGCGGTAGAGGCGG+AGG - chr1.4:87114422-87114441 MS.gene029242:intron 70.0%
!! CGTGGTGGCGGAAGAGGTGG+TGG - chr1.4:87114470-87114489 MS.gene029242:intron 70.0%
!! GGCCGTGGTGGTTCTGGTGG+AGG - chr1.4:87114302-87114321 MS.gene029242:intron 70.0%
CGTGGAGGAGGCCGTGGTGG+CGG - chr1.4:87114458-87114477 MS.gene029242:intron 75.0%
GGACGTGGAGGAGGCCGTGG+TGG - chr1.4:87114455-87114474 MS.gene029242:intron 75.0%
GGAGGACGTGGAGGAGGCCG+TGG - chr1.4:87114452-87114471 MS.gene029242:intron 75.0%
! GGTGGCGGTAGAGGCGGAGG+AGG - chr1.4:87114425-87114444 MS.gene029242:intron 75.0%
!! GGAGGCCGTGGTGGCGGAAG+AGG - chr1.4:87114464-87114483 MS.gene029242:intron 75.0%
!! GGCCGTGGTGGCGGAAGAGG+TGG - chr1.4:87114467-87114486 MS.gene029242:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 87114117 87117003 87114117 ID=MS.gene029242
chr1.4 mRNA 87114117 87117003 87114117 ID=MS.gene029242.t1;Parent=MS.gene029242
chr1.4 exon 87116985 87117003 87116985 ID=MS.gene029242.t1.exon1;Parent=MS.gene029242.t1
chr1.4 CDS 87116985 87117003 87116985 ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1
chr1.4 exon 87116486 87116817 87116486 ID=MS.gene029242.t1.exon2;Parent=MS.gene029242.t1
chr1.4 CDS 87116486 87116817 87116486 ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1
chr1.4 exon 87116098 87116193 87116098 ID=MS.gene029242.t1.exon3;Parent=MS.gene029242.t1
chr1.4 CDS 87116098 87116193 87116098 ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1
chr1.4 exon 87115941 87116018 87115941 ID=MS.gene029242.t1.exon4;Parent=MS.gene029242.t1
chr1.4 CDS 87115941 87116018 87115941 ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1
chr1.4 exon 87115663 87115839 87115663 ID=MS.gene029242.t1.exon5;Parent=MS.gene029242.t1
chr1.4 CDS 87115663 87115839 87115663 ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1
chr1.4 exon 87114618 87114686 87114618 ID=MS.gene029242.t1.exon6;Parent=MS.gene029242.t1
chr1.4 CDS 87114618 87114686 87114618 ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1
chr1.4 exon 87114117 87114293 87114117 ID=MS.gene029242.t1.exon7;Parent=MS.gene029242.t1
chr1.4 CDS 87114117 87114293 87114117 ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1
Gene Sequence

>MS.gene029242

ATGGCTCCTCCTGTTCGAGGTAACAGAACACATTAACCATCCTTGTTCGAATTAGAGTTTATTGATGATGCTTTTGTTTACCTTTATTTGTTAAAATCAAATGGGTTTACGCTAATTTGCTCAAAAGAATGATTTTACTTGTTTTATGAACTATATAGTGATTTTTGTTTCGTTGATATTGTACAGGCCGTGGTGGTTCTGGTGGAGGGTTCAGAGGAGGAAGGGGTGGTGATAGAGGAGGTAGAGGAGGTGGGAGAGGTGGTTTTGGAGGACGAGGAGGAGATAGAGGTACCCCTTTCAAGGCTAGAGGTGGCGGTAGAGGCGGAGGAGGCAGAGGAGGACGTGGAGGAGGCCGTGGTGGCGGAAGAGGTGGTGGAATGAAGGGAGGAAGCAAGGTTATTGTTGAACCCCATAGACATGAGGGTATTTTCATTGCTAAGGGTAAAGAAGATGCTCTTGTCACTAAGAATCTTGTTCCTGGAGAAGCTGTTTACAATGAGAAGAGGGTTACCGTGCAGGTATTTCCTTTCTCATCCTTGGATGTTTGTGCTTTGAATTTATTTAGCTCTTTTCAAATTAGTAGCTGTCAATTGAGTTTAACTTACATGTTTATGTGTTGCAATCAATCATTTTGTTCCTATTTTACTAGACAATAACATCTCTTTTACTTGATTTTATCACATAAATGTGCTTTCAAATCTTGCAAAATATTTTTCTGAATGTGATATTTTTTTTCAAGATTTCAGTGTGTATCAGTCATATTATTCTATTTAATAGTGGCATGACAATTTTGTGACATATTTTCTGCAGAATGAGGATGGTACTAAGACAGAGTATAGAATTTGGAACCCTTTCCGTTCTAAGTTGGCAGCTGCTGTCCTTGGTGGTGTCGACAATATATGGATTGTAAGTTGCTTCGTTTTTCTGCAACATTACAGTCCTTTAAATACATTATATTGACATCTTAATTTTGGTTTTTATCTAGAAACCTGGCGCTAAAGTCCTTTACCTAGGAGCTGCTTCTGGAACAACTGTGTCTCATGTGTCTGATATTGTTGGTCCTGTAAGTATTAGTTCAACTTGGTTGATTTTTTTTTTTCTTCTTCCAACATATGTATGTTTTGTGTTTGAGGCTGATTTGAATATCATGTTCTGTTTATGTAGACTGGAGTTGTGTATGCAGTAGAATTCTCCCATCGAAGTGGGCGTGACTTGGTCAATATGGCCAAGAAGCGTACTAATGTTATACCAATTATTGAAGATGCTAGACATCCCGCCAAGTACAGAATGTTGGTTGGCATGGTAGATGTGATATTTTCTGATGTTGCTCAGCCTGATCAGGTGTGGTTTAATTTTCCCTCTTTTTTAAGTTAAGAGTACTAGCTATATATTTTTAACTCTCATGATAGTACCATTCACTTTTCTACTAATGCATAACATTAATCTCTACTATGTCATTGTAGTAATCTATTTACTGATTTAATGTGTCTTGATGGAATGCACAATTTGTTTATTATTGTTTATTTCAAAGTGTAAAATGTAAAATGTTTTGGTTACTACAACATCGGTGCATGTGATGAGTTACTCGGATTCCCCTTCAAGACTTCTTGGATGATGTAGACCCGAGATTCTGATGCACATATTTTGGTCTTTTTCTTTATATTGTTTTACTAAAAACTAATACTGTATTTTAAATCCTGTTTTGTTTATAAATTTTCGTTTCCAATTTTGTTTATAAATTTTCATTTCAAAGTGTAAAATGTTTTGATCACTACATCAGTGCATGTGATGAGTTACTCGGATTCCCCTTCAAGACTTCTTGGATGATGTAGACCCCAGATTCTGATGCACATCAATTTTTTTTTCTCTCTCTATTTATCTATATTGTTTTATAATGTTTAAGAACAGGATTGGGGGCAGTAATGACTTGTTTAGGCACATGGTTTTTGTTTCAGATTCCCTATTTTTCCAGTTGAGCCTAATTTATTTTAATGATTTTCAGATTTTTAATTTGTTAACTTTTTGGTGTTTGTTTTCTATGAATGAATTTGATCGAAATGTGTTGTATATATGATGTTTATTAAATAGTGGTGGCTTGAAACACCTTGCAGTCTCAAAATCATTTTTGGTTTGCGTTTCCGTATCTTGCATTATATCCTTGATTGTTGATTTGCAATCTGGATTTTTATTTGTTACTTTTGATGTCTGTTTGTTTTTAATAAATAAGTGTAAGTGTTGATGTTAACCAAATAGCAGTGGGACGAATCTCCATGTATTCTATGTGTCAGTGTTGATTATACTATGTTGATATTTGCAGGCAAGAATTTTAGGTCTGAATGCTTCATATTATCTCAAAGCTGGAGGACACTTTGTTATTTCTATCAAGGTTTGTTCAGAAATCTATTGTATTAAACCAGTTTCTTGTTTTTTAAAGCTTACTTTCTATAGGAATCTTGGAAAACAATCCGTATTTTTTTGTTATGCATTACTTCAATAACAATAAACCATGGGAAAATGAGGTTAGTATTTGGCGTGTGCTCATTTTGACCTCATTTTGACCTTATACTTCATTGGATAGATAAAATCCCTTCAAACCTTTGTAAAATGGTGAATGAATTATGTCAATGTTGATGCTTGCTTGGCTTTGAATTAAGTTTAAATTTTAATTTTTTGTATTGGTTTCTAAATCAATTTTATTTTGTATTTGTAGGCCAATTGTATTGATTCCACAGTTCCAGCTGAGGCAGTATTCAGCGCTGAGGTGAACAAGTTGAAAGCTGATCAATTTAAGCCAATGGAGCAAGTGACTCTTGAACCATTTGAGAGGGACCATGCTTGTGTTGTTGGTGGCTATAGAGTGCCCAAGAAGAAAAAAGATGCCGAGTAG

Protein sequence

>MS.gene029242.t1

MAPPVRGRGGSGGGFRGGRGGDRGGRGGGRGGFGGRGGDRGTPFKARGGGRGGGGRGGRGGGRGGGRGGGMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRVTVQNEDGTKTEYRIWNPFRSKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTVPAEAVFSAEVNKLKADQFKPMEQVTLEPFERDHACVVGGYRVPKKKKDAE