AlfalfaGEDB | MS.gene029242

M. sativa cultivar XinJiangDaYe / MS.gene029242

KEGG: K14563
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0009987 GO:0016070 GO:0016072 GO:0016740 GO:0016741 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363
PFAM: PF01269.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029242.t1	XP_003592692.1	100	239	0	0	77	315	75	313	3.00E-132	481.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029242.t1	Q94AH9	90.8	238	22	0	77	314	80	317	7.5e-124	444.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029242.t1	G7IDD7	100.0	239	0	0	77	315	75	313	2.2e-132	481.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003290	MS.gene029242	PPI
MS.gene003435	MS.gene029242	PPI
MS.gene003452	MS.gene029242	PPI
MS.gene003693	MS.gene029242	PPI
MS.gene005792	MS.gene029242	PPI
MS.gene007661	MS.gene029242	PPI
MS.gene008731	MS.gene029242	PPI
MS.gene009509	MS.gene029242	PPI
MS.gene011390	MS.gene029242	PPI
MS.gene012655	MS.gene029242	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029242.t1	MTR_1g114000	99.365	315	0	1	1	315	1	313	0.0	616
MS.gene029242.t1	MTR_6g047580	97.510	241	6	0	75	315	69	309	2.40e-175	488
MS.gene029242.t1	MTR_6g047580	93.985	266	16	0	50	315	12	277	6.08e-173	480
MS.gene029242.t1	MTR_6g047580	97.826	184	4	0	75	258	69	252	1.23e-129	370
MS.gene029242.t1	MTR_6g047580	84.293	191	28	1	75	265	69	257	1.06e-112	327

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029242.t1	AT4G25630	90.984	244	22	71	314	74	317	9.87e-168	469
MS.gene029242.t1	AT5G52470	90.083	242	24	71	312	63	304	2.68e-165	462
MS.gene029242.t1	AT5G52490	71.074	242	70	69	310	51	292	2.40e-128	368
MS.gene029242.t1	AT5G52470	93.902	164	10	71	234	63	226	3.16e-111	324

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Find 111 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCCTCATGTCTATG+GGG	0.663716	1.4:+87116574	None:intergenic
AAATTAAACCACACCTGATC+AGG	0.414931	1.4:+87115649	None:intergenic
AACCAACATTCTGTACTTGG+CGG	0.526725	1.4:+87115708	None:intergenic
AACTGTGGAATCAATACAAT+TGG	0.448320	1.4:+87114270	None:intergenic
AAGCTGTTTACAATGAGAAG+AGG	0.601232	1.4:-87116498	MS.gene029242:CDS
AAGGCTAGAGGTGGCGGTAG+AGG	0.468910	1.4:-87116682	MS.gene029242:CDS
AAGTTGGCAGCTGCTGTCCT+TGG	0.472296	1.4:-87116120	MS.gene029242:CDS
ACAATGGCTCCTCCTGTTCG+AGG	0.533054	1.4:-87116984	MS.gene029242:intron
ACACTTTGTTATTTCTATCA+AGG	0.422492	1.4:-87114617	MS.gene029242:intron
ACAGGCCGTGGTGGTTCTGG+TGG	0.566444	1.4:-87116799	MS.gene029242:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATGTGCATCAGAATCT+CGG	+	chr1.4:87115742-87115761	None:intergenic	30.0%
AACTGTGGAATCAATACAAT+TGG	+	chr1.4:87116831-87116850	None:intergenic	30.0%
AATGTTTAAGAACAGGATTG+GGG	-	chr1.4:87116010-87116029	MS.gene029242:intron	30.0%
AGATTGCAAATCAACAATCA+AGG	+	chr1.4:87116276-87116295	None:intergenic	30.0%
CAAGGATATAATGCAAGATA+CGG	+	chr1.4:87116258-87116277	None:intergenic	30.0%
CTAAGACAGAGTATAGAATT+TGG	-	chr1.4:87114940-87114959	MS.gene029242:intron	30.0%
CTGTAAGTATTAGTTCAACT+TGG	-	chr1.4:87115178-87115197	MS.gene029242:intron	30.0%
CTTACTTTCTATAGGAATCT+TGG	-	chr1.4:87116551-87116570	MS.gene029242:CDS	30.0%
TATAACATTAGTACGCTTCT+TGG	+	chr1.4:87115345-87115364	None:intergenic	30.0%
TGAAGTATAAGGTCAAAATG+AGG	+	chr1.4:87116667-87116686	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	87114117	87117003	87114117	ID=MS.gene029242
chr1.4	mRNA	87114117	87117003	87114117	ID=MS.gene029242.t1;Parent=MS.gene029242
chr1.4	exon	87116985	87117003	87116985	ID=MS.gene029242.t1.exon1;Parent=MS.gene029242.t1
chr1.4	CDS	87116985	87117003	87116985	ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1
chr1.4	exon	87116486	87116817	87116486	ID=MS.gene029242.t1.exon2;Parent=MS.gene029242.t1
chr1.4	CDS	87116486	87116817	87116486	ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1
chr1.4	exon	87116098	87116193	87116098	ID=MS.gene029242.t1.exon3;Parent=MS.gene029242.t1
chr1.4	CDS	87116098	87116193	87116098	ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1
chr1.4	exon	87115941	87116018	87115941	ID=MS.gene029242.t1.exon4;Parent=MS.gene029242.t1
chr1.4	CDS	87115941	87116018	87115941	ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1
chr1.4	exon	87115663	87115839	87115663	ID=MS.gene029242.t1.exon5;Parent=MS.gene029242.t1
chr1.4	CDS	87115663	87115839	87115663	ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1
chr1.4	exon	87114618	87114686	87114618	ID=MS.gene029242.t1.exon6;Parent=MS.gene029242.t1
chr1.4	CDS	87114618	87114686	87114618	ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1
chr1.4	exon	87114117	87114293	87114117	ID=MS.gene029242.t1.exon7;Parent=MS.gene029242.t1
chr1.4	CDS	87114117	87114293	87114117	ID=cds.MS.gene029242.t1;Parent=MS.gene029242.t1

Gene Sequence

>MS.gene029242

ATGGCTCCTCCTGTTCGAGGTAACAGAACACATTAACCATCCTTGTTCGAATTAGAGTTTATTGATGATGCTTTTGTTTACCTTTATTTGTTAAAATCAAATGGGTTTACGCTAATTTGCTCAAAAGAATGATTTTACTTGTTTTATGAACTATATAGTGATTTTTGTTTCGTTGATATTGTACAGGCCGTGGTGGTTCTGGTGGAGGGTTCAGAGGAGGAAGGGGTGGTGATAGAGGAGGTAGAGGAGGTGGGAGAGGTGGTTTTGGAGGACGAGGAGGAGATAGAGGTACCCCTTTCAAGGCTAGAGGTGGCGGTAGAGGCGGAGGAGGCAGAGGAGGACGTGGAGGAGGCCGTGGTGGCGGAAGAGGTGGTGGAATGAAGGGAGGAAGCAAGGTTATTGTTGAACCCCATAGACATGAGGGTATTTTCATTGCTAAGGGTAAAGAAGATGCTCTTGTCACTAAGAATCTTGTTCCTGGAGAAGCTGTTTACAATGAGAAGAGGGTTACCGTGCAGGTATTTCCTTTCTCATCCTTGGATGTTTGTGCTTTGAATTTATTTAGCTCTTTTCAAATTAGTAGCTGTCAATTGAGTTTAACTTACATGTTTATGTGTTGCAATCAATCATTTTGTTCCTATTTTACTAGACAATAACATCTCTTTTACTTGATTTTATCACATAAATGTGCTTTCAAATCTTGCAAAATATTTTTCTGAATGTGATATTTTTTTTCAAGATTTCAGTGTGTATCAGTCATATTATTCTATTTAATAGTGGCATGACAATTTTGTGACATATTTTCTGCAGAATGAGGATGGTACTAAGACAGAGTATAGAATTTGGAACCCTTTCCGTTCTAAGTTGGCAGCTGCTGTCCTTGGTGGTGTCGACAATATATGGATTGTAAGTTGCTTCGTTTTTCTGCAACATTACAGTCCTTTAAATACATTATATTGACATCTTAATTTTGGTTTTTATCTAGAAACCTGGCGCTAAAGTCCTTTACCTAGGAGCTGCTTCTGGAACAACTGTGTCTCATGTGTCTGATATTGTTGGTCCTGTAAGTATTAGTTCAACTTGGTTGATTTTTTTTTTTCTTCTTCCAACATATGTATGTTTTGTGTTTGAGGCTGATTTGAATATCATGTTCTGTTTATGTAGACTGGAGTTGTGTATGCAGTAGAATTCTCCCATCGAAGTGGGCGTGACTTGGTCAATATGGCCAAGAAGCGTACTAATGTTATACCAATTATTGAAGATGCTAGACATCCCGCCAAGTACAGAATGTTGGTTGGCATGGTAGATGTGATATTTTCTGATGTTGCTCAGCCTGATCAGGTGTGGTTTAATTTTCCCTCTTTTTTAAGTTAAGAGTACTAGCTATATATTTTTAACTCTCATGATAGTACCATTCACTTTTCTACTAATGCATAACATTAATCTCTACTATGTCATTGTAGTAATCTATTTACTGATTTAATGTGTCTTGATGGAATGCACAATTTGTTTATTATTGTTTATTTCAAAGTGTAAAATGTAAAATGTTTTGGTTACTACAACATCGGTGCATGTGATGAGTTACTCGGATTCCCCTTCAAGACTTCTTGGATGATGTAGACCCGAGATTCTGATGCACATATTTTGGTCTTTTTCTTTATATTGTTTTACTAAAAACTAATACTGTATTTTAAATCCTGTTTTGTTTATAAATTTTCGTTTCCAATTTTGTTTATAAATTTTCATTTCAAAGTGTAAAATGTTTTGATCACTACATCAGTGCATGTGATGAGTTACTCGGATTCCCCTTCAAGACTTCTTGGATGATGTAGACCCCAGATTCTGATGCACATCAATTTTTTTTTCTCTCTCTATTTATCTATATTGTTTTATAATGTTTAAGAACAGGATTGGGGGCAGTAATGACTTGTTTAGGCACATGGTTTTTGTTTCAGATTCCCTATTTTTCCAGTTGAGCCTAATTTATTTTAATGATTTTCAGATTTTTAATTTGTTAACTTTTTGGTGTTTGTTTTCTATGAATGAATTTGATCGAAATGTGTTGTATATATGATGTTTATTAAATAGTGGTGGCTTGAAACACCTTGCAGTCTCAAAATCATTTTTGGTTTGCGTTTCCGTATCTTGCATTATATCCTTGATTGTTGATTTGCAATCTGGATTTTTATTTGTTACTTTTGATGTCTGTTTGTTTTTAATAAATAAGTGTAAGTGTTGATGTTAACCAAATAGCAGTGGGACGAATCTCCATGTATTCTATGTGTCAGTGTTGATTATACTATGTTGATATTTGCAGGCAAGAATTTTAGGTCTGAATGCTTCATATTATCTCAAAGCTGGAGGACACTTTGTTATTTCTATCAAGGTTTGTTCAGAAATCTATTGTATTAAACCAGTTTCTTGTTTTTTAAAGCTTACTTTCTATAGGAATCTTGGAAAACAATCCGTATTTTTTTGTTATGCATTACTTCAATAACAATAAACCATGGGAAAATGAGGTTAGTATTTGGCGTGTGCTCATTTTGACCTCATTTTGACCTTATACTTCATTGGATAGATAAAATCCCTTCAAACCTTTGTAAAATGGTGAATGAATTATGTCAATGTTGATGCTTGCTTGGCTTTGAATTAAGTTTAAATTTTAATTTTTTGTATTGGTTTCTAAATCAATTTTATTTTGTATTTGTAGGCCAATTGTATTGATTCCACAGTTCCAGCTGAGGCAGTATTCAGCGCTGAGGTGAACAAGTTGAAAGCTGATCAATTTAAGCCAATGGAGCAAGTGACTCTTGAACCATTTGAGAGGGACCATGCTTGTGTTGTTGGTGGCTATAGAGTGCCCAAGAAGAAAAAAGATGCCGAGTAG

Protein sequence

>MS.gene029242.t1

MAPPVRGRGGSGGGFRGGRGGDRGGRGGGRGGFGGRGGDRGTPFKARGGGRGGGGRGGRGGGRGGGRGGGMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRVTVQNEDGTKTEYRIWNPFRSKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTVPAEAVFSAEVNKLKADQFKPMEQVTLEPFERDHACVVGGYRVPKKKKDAE