Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025602.t1 | GAU28582.1 | 92.9 | 113 | 8 | 0 | 1 | 113 | 1 | 113 | 7.70E-52 | 213.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025602.t1 | Q38859 | 82.3 | 113 | 20 | 0 | 1 | 113 | 1 | 113 | 4.0e-49 | 195.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025602.t1 | A0A2Z6MUC9 | 92.9 | 113 | 8 | 0 | 1 | 113 | 1 | 113 | 5.5e-52 | 213.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025602 | MS.gene27025 | PPI |
| MS.gene025602 | MS.gene64820 | PPI |
| MS.gene025602 | MS.gene67685 | PPI |
| MS.gene025602 | MS.gene44023 | PPI |
| MS.gene025602 | MS.gene90747 | PPI |
| MS.gene058216 | MS.gene025602 | PPI |
| MS.gene063673 | MS.gene025602 | PPI |
| MS.gene025602 | MS.gene70805 | PPI |
| MS.gene025602 | MS.gene69921 | PPI |
| MS.gene67503 | MS.gene025602 | PPI |
| MS.gene025602 | MS.gene24205 | PPI |
| MS.gene025602 | MS.gene65289 | PPI |
| MS.gene025602 | MS.gene56011 | PPI |
| MS.gene025602 | MS.gene27287 | PPI |
| MS.gene005152 | MS.gene025602 | PPI |
| MS.gene00182 | MS.gene025602 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025602.t1 | MTR_4g037750 | 92.035 | 113 | 9 | 0 | 1 | 113 | 1 | 113 | 3.38e-75 | 220 |
| MS.gene025602.t1 | MTR_6g004540 | 93.333 | 75 | 5 | 0 | 1 | 75 | 1 | 75 | 6.19e-49 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025602.t1 | AT3G52090 | 82.301 | 113 | 20 | 0 | 1 | 113 | 1 | 113 | 1.32e-68 | 203 |
| MS.gene025602.t1 | AT3G52090 | 65.035 | 143 | 20 | 1 | 1 | 113 | 1 | 143 | 4.55e-61 | 185 |
Find 40 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCGACGGAGAGGAGGAAG+AGG | 0.305328 | 4.3:-61880507 | MS.gene025602:CDS |
| TATCCAGCGAATAACACATT+AGG | 0.348978 | 4.3:+61882531 | None:intergenic |
| GGTGGCTTCGATGGAGAAAA+AGG | 0.362570 | 4.3:-61880534 | MS.gene025602:CDS |
| GTAACGATCGGGTGCATTCA+TGG | 0.369473 | 4.3:+61882887 | None:intergenic |
| ATGAATCCATTGGCATGCTT+TGG | 0.379732 | 4.3:-61881057 | MS.gene025602:CDS |
| TTCAGTACAAAATTATCATC+AGG | 0.382359 | 4.3:-61882491 | MS.gene025602:CDS |
| TACCTCAAAACCACTCTTCA+AGG | 0.393375 | 4.3:+61881581 | None:intergenic |
| GCGACGGAGAGGAGGAAGAG+GGG | 0.396561 | 4.3:-61880505 | MS.gene025602:CDS |
| TAACCAGTCTATTAATGATC+TGG | 0.435786 | 4.3:-61881619 | MS.gene025602:CDS |
| ATCCAGCGAATAACACATTA+GGG | 0.445494 | 4.3:+61882532 | None:intergenic |
| GAGAGGAGGAAGAGGGGTGG+TGG | 0.459040 | 4.3:-61880499 | MS.gene025602:CDS |
| AGTGTGATCTTCTCTTTCAA+TGG | 0.460602 | 4.3:+61882687 | None:intergenic |
| GACCCTAATGTGTTATTCGC+TGG | 0.469437 | 4.3:-61882534 | MS.gene025602:CDS |
| GGAGGGAGGCGACGGAGAGG+AGG | 0.478356 | 4.3:-61880513 | MS.gene025602:CDS |
| GATGACACAGGTGGCTTCGA+TGG | 0.481500 | 4.3:-61880543 | MS.gene025602:intron |
| AAAGGAGGGAGGCGACGGAG+AGG | 0.487783 | 4.3:-61880516 | MS.gene025602:CDS |
| ACGGAGAGGAGGAAGAGGGG+TGG | 0.490439 | 4.3:-61880502 | MS.gene025602:CDS |
| CAGCCAGTCTTCACCAATGC+AGG | 0.497359 | 4.3:-61881646 | MS.gene025602:CDS |
| TGTCCAGATCATTAATAGAC+TGG | 0.498287 | 4.3:+61881616 | None:intergenic |
| TTGGTTGAAGGTAAAATCAA+AGG | 0.502993 | 4.3:-61881107 | MS.gene025602:intron |
| GGCGACGGAGAGGAGGAAGA+GGG | 0.508884 | 4.3:-61880506 | MS.gene025602:CDS |
| TGGTTGAAGGTAAAATCAAA+GGG | 0.515508 | 4.3:-61881106 | MS.gene025602:intron |
| GACGAAACGCTCGTAACGAT+CGG | 0.522382 | 4.3:+61882875 | None:intergenic |
| ACGAAACGCTCGTAACGATC+GGG | 0.531962 | 4.3:+61882876 | None:intergenic |
| CTGCATTGGTGAAGACTGGC+TGG | 0.534907 | 4.3:+61881647 | None:intergenic |
| AATAAAGGGTTTCGTACGAG+AGG | 0.538852 | 4.3:-61882741 | MS.gene025602:intron |
| ATGCCTGCATTGGTGAAGAC+TGG | 0.541956 | 4.3:+61881643 | None:intergenic |
| GAGCGTTTCGTCGTCCCCGA+AGG | 0.559317 | 4.3:-61882864 | MS.gene025602:CDS |
| TCAGTACAAAATTATCATCA+GGG | 0.570840 | 4.3:-61882490 | MS.gene025602:intron |
| GAACTTGATACCTTGAAGAG+TGG | 0.588358 | 4.3:-61881591 | MS.gene025602:CDS |
| GAAAGAGAAGATCACACTAT+CGG | 0.589235 | 4.3:-61882682 | MS.gene025602:CDS |
| GGATTCATGCTCGTGTGAAG+TGG | 0.589758 | 4.3:+61881072 | None:intergenic |
| TCACACGAGCATGAATCCAT+TGG | 0.598773 | 4.3:-61881067 | MS.gene025602:CDS |
| GACTGGTTATATGCCTGCAT+TGG | 0.605258 | 4.3:+61881633 | None:intergenic |
| GGTGGTGGTGCACAGAGAAG+AGG | 0.611501 | 4.3:-61880484 | MS.gene025602:CDS |
| TCTCTTTCTGTCAAACACAT+CGG | 0.628844 | 4.3:+61880459 | None:intergenic |
| ATAAAGGGTTTCGTACGAGA+GGG | 0.647792 | 4.3:-61882740 | MS.gene025602:intron |
| GTCTATTAATGATCTGGACA+AGG | 0.664690 | 4.3:-61881613 | MS.gene025602:CDS |
| GTTAAGCCAAAGCATGCCAA+TGG | 0.667524 | 4.3:+61881051 | None:intergenic |
| TGGGTAGTACATACATGCGG+AGG | 0.701441 | 4.3:+61882653 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAAAATAAAAAAGTT+AGG | + | chr4.3:61880755-61880774 | None:intergenic | 10.0% |
| !! | AACAAAAAATAAAAAAGTTA+GGG | + | chr4.3:61880754-61880773 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTAATGTTTTC+AGG | - | chr4.3:61880785-61880804 | MS.gene025602:intron | 10.0% |
| !!! | TTATTTTTAGTTTTAAATCT+TGG | + | chr4.3:61882525-61882544 | None:intergenic | 10.0% |
| !! | ATATATTTATTTGGAGAAAA+TGG | - | chr4.3:61881182-61881201 | MS.gene025602:intron | 15.0% |
| !!! | ATTTTTTTTCGAGTAAATAA+AGG | - | chr4.3:61880598-61880617 | MS.gene025602:intron | 15.0% |
| !!! | TTTTTTTCTTTTCTTAAAGT+AGG | - | chr4.3:61881596-61881615 | MS.gene025602:CDS | 15.0% |
| !!! | TTTTTTTTCGAGTAAATAAA+GGG | - | chr4.3:61880599-61880618 | MS.gene025602:intron | 15.0% |
| !! | AAAAAAAACACAACATACAT+AGG | + | chr4.3:61881579-61881598 | None:intergenic | 20.0% |
| !! | AAAATGAGAAAAAAGAGAAT+AGG | + | chr4.3:61880566-61880585 | None:intergenic | 20.0% |
| !! | AAACAGGCTATATATTTATT+TGG | - | chr4.3:61881173-61881192 | MS.gene025602:intron | 20.0% |
| !! | AAATAAATATATAGCCTGTT+TGG | + | chr4.3:61881174-61881193 | None:intergenic | 20.0% |
| !! | AAGATAAAAAAAGATCCATT+AGG | + | chr4.3:61881279-61881298 | None:intergenic | 20.0% |
| !! | GTATATAAACTGAAAACTTA+TGG | + | chr4.3:61881399-61881418 | None:intergenic | 20.0% |
| !!! | TGTCATTTTTTAATTACTAC+CGG | + | chr4.3:61880937-61880956 | None:intergenic | 20.0% |
| ! | AAAAAGAGAATAGGTAAAGA+AGG | + | chr4.3:61880557-61880576 | None:intergenic | 25.0% |
| ! | ACTTTCTTATAGCAATGAAT+TGG | - | chr4.3:61881307-61881326 | MS.gene025602:intron | 25.0% |
| ! | ATGCTCCATTTATTCTATTT+AGG | - | chr4.3:61882460-61882479 | MS.gene025602:intron | 25.0% |
| ! | ATGGAAAATGTAAATAGAAG+CGG | + | chr4.3:61881843-61881862 | None:intergenic | 25.0% |
| ! | ATTTATTTACTCTCCTTTCT+TGG | - | chr4.3:61881863-61881882 | MS.gene025602:intron | 25.0% |
| ! | GAAAGGAGAGTAAATAAATA+TGG | + | chr4.3:61881862-61881881 | None:intergenic | 25.0% |
| ! | TCAGTACAAAATTATCATCA+GGG | - | chr4.3:61880864-61880883 | MS.gene025602:intron | 25.0% |
| ! | TGCTCCATTTATTCTATTTA+GGG | - | chr4.3:61882461-61882480 | MS.gene025602:intron | 25.0% |
| ! | TTCAGTACAAAATTATCATC+AGG | - | chr4.3:61880863-61880882 | MS.gene025602:intron | 25.0% |
| !! | ATGATAATTTTGTACTGAAG+AGG | + | chr4.3:61880862-61880881 | None:intergenic | 25.0% |
| !! | ATTCTTCTTTTTGCATGTTA+TGG | - | chr4.3:61882633-61882652 | MS.gene025602:intron | 25.0% |
| !! | ATTTTTATCTGTATGCGAAT+TGG | - | chr4.3:61881637-61881656 | MS.gene025602:CDS | 25.0% |
| !! | TAAATGAACTGAATTGGTTT+CGG | - | chr4.3:61881252-61881271 | MS.gene025602:intron | 25.0% |
| !! | TTTTTATCTGTATGCGAATT+GGG | - | chr4.3:61881638-61881657 | MS.gene025602:CDS | 25.0% |
| !!! | AGAACATAAAGTTGATAGTT+TGG | - | chr4.3:61882146-61882165 | MS.gene025602:intron | 25.0% |
| !!! | ATAAAGTTGATAGTTTGGAT+TGG | - | chr4.3:61882151-61882170 | MS.gene025602:intron | 25.0% |
| AAAAACGAAGAAAGAGAAAG+TGG | + | chr4.3:61880724-61880743 | None:intergenic | 30.0% | |
| AAAACGAAGAAAGAGAAAGT+GGG | + | chr4.3:61880723-61880742 | None:intergenic | 30.0% | |
| AAATAAGCTGAAAACAGCTT+AGG | - | chr4.3:61881065-61881084 | MS.gene025602:CDS | 30.0% | |
| AAGGCCCTAAATAGAATAAA+TGG | + | chr4.3:61882468-61882487 | None:intergenic | 30.0% | |
| ATGTGTTTGGATGATTTAGA+AGG | - | chr4.3:61882174-61882193 | MS.gene025602:intron | 30.0% | |
| CATGTGTAAATGAACTGAAT+TGG | - | chr4.3:61881246-61881265 | MS.gene025602:intron | 30.0% | |
| TAAACACATGAAGAAGAAAG+TGG | - | chr4.3:61882778-61882797 | MS.gene025602:intron | 30.0% | |
| TAACCAGTCTATTAATGATC+TGG | - | chr4.3:61881735-61881754 | MS.gene025602:intron | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr4.3:61881157-61881176 | MS.gene025602:intron | 30.0% | |
| TGATTTATCTGTCTTATCCA+AGG | + | chr4.3:61881228-61881247 | None:intergenic | 30.0% | |
| TGGTTGAAGGTAAAATCAAA+GGG | - | chr4.3:61882248-61882267 | MS.gene025602:intron | 30.0% | |
| TGTATAAGAATTGCCAAGAA+AGG | + | chr4.3:61881879-61881898 | None:intergenic | 30.0% | |
| TTCATTGCTATAAGAAAGTG+TGG | + | chr4.3:61881306-61881325 | None:intergenic | 30.0% | |
| TTGGTTGAAGGTAAAATCAA+AGG | - | chr4.3:61882247-61882266 | MS.gene025602:intron | 30.0% | |
| ! | GACATTTTCATAAGCTATCT+TGG | - | chr4.3:61881030-61881049 | MS.gene025602:intron | 30.0% |
| ! | TAAATGGAGCATTACCTAAA+TGG | + | chr4.3:61882452-61882471 | None:intergenic | 30.0% |
| ! | TTGAGAATTTGAGCTTTGAT+AGG | - | chr4.3:61882390-61882409 | MS.gene025602:intron | 30.0% |
| !! | AAGTAAGAAGTTGATATCTG+TGG | - | chr4.3:61882219-61882238 | MS.gene025602:intron | 30.0% |
| !!! | AGATACTTTTTTATGCCTTC+GGG | + | chr4.3:61880508-61880527 | None:intergenic | 30.0% |
| !!! | GAGATACTTTTTTATGCCTT+CGG | + | chr4.3:61880509-61880528 | None:intergenic | 30.0% |
| AGTGTGATCTTCTCTTTCAA+TGG | + | chr4.3:61880670-61880689 | None:intergenic | 35.0% | |
| ATCCAGCGAATAACACATTA+GGG | + | chr4.3:61880825-61880844 | None:intergenic | 35.0% | |
| ATGCATTTGGGAATAGTTTG+TGG | - | chr4.3:61882109-61882128 | MS.gene025602:intron | 35.0% | |
| ATGTGGCAAAATAACATCCA+AGG | - | chr4.3:61882498-61882517 | MS.gene025602:CDS | 35.0% | |
| CAACATACATAGGTCATGTT+TGG | + | chr4.3:61881569-61881588 | None:intergenic | 35.0% | |
| GAAAGAGAAGATCACACTAT+CGG | - | chr4.3:61880672-61880691 | MS.gene025602:intron | 35.0% | |
| GCATTGAGCTTATTAATCCT+TGG | - | chr4.3:61881208-61881227 | MS.gene025602:intron | 35.0% | |
| GTCTATTAATGATCTGGACA+AGG | - | chr4.3:61881741-61881760 | MS.gene025602:intron | 35.0% | |
| TAATTGATGTCCATCACAAG+AGG | - | chr4.3:61882660-61882679 | MS.gene025602:intron | 35.0% | |
| TATCCAGCGAATAACACATT+AGG | + | chr4.3:61880826-61880845 | None:intergenic | 35.0% | |
| TGTAAATAGAAGCGGTATTG+AGG | + | chr4.3:61881835-61881854 | None:intergenic | 35.0% | |
| TGTCCAGATCATTAATAGAC+TGG | + | chr4.3:61881741-61881760 | None:intergenic | 35.0% | |
| TGTGGCAAAATAACATCCAA+GGG | - | chr4.3:61882499-61882518 | MS.gene025602:CDS | 35.0% | |
| ! | ATTTTGTACTGAAGAGGATG+AGG | + | chr4.3:61880856-61880875 | None:intergenic | 35.0% |
| ! | CAAATTTTTCCATGACCACT+GGG | + | chr4.3:61882032-61882051 | None:intergenic | 35.0% |
| ! | GTTTCTCTTCTCTTTTCTGT+TGG | - | chr4.3:61882610-61882629 | MS.gene025602:intron | 35.0% |
| ! | TAGTTTGGATTGGATGTGTT+TGG | - | chr4.3:61882161-61882180 | MS.gene025602:intron | 35.0% |
| ! | TTTGAGCTTTGATAGGAAAG+AGG | - | chr4.3:61882397-61882416 | MS.gene025602:intron | 35.0% |
| !! | TAAGAAGTTGATATCTGTGG+AGG | - | chr4.3:61882222-61882241 | MS.gene025602:intron | 35.0% |
| !!! | AGAGCGAATTTTTTGAGTTC+AGG | - | chr4.3:61882420-61882439 | MS.gene025602:intron | 35.0% |
| !!! | GATACTTTTTTATGCCTTCG+GGG | + | chr4.3:61880507-61880526 | None:intergenic | 35.0% |
| !!! | TAGTTTTAAATCTTGGCCCT+TGG | + | chr4.3:61882518-61882537 | None:intergenic | 35.0% |
| AAGCGTTCTTTGCATGCATT+TGG | - | chr4.3:61882096-61882115 | MS.gene025602:intron | 40.0% | |
| AAGTGGGTAGTACATACATG+CGG | + | chr4.3:61880707-61880726 | None:intergenic | 40.0% | |
| AATAAAGGGTTTCGTACGAG+AGG | - | chr4.3:61880613-61880632 | MS.gene025602:intron | 40.0% | |
| ACATGAAGAAGAAAGTGGCT+GGG | - | chr4.3:61882783-61882802 | MS.gene025602:intron | 40.0% | |
| AGAGAAGAGAAACGTGAATC+TGG | + | chr4.3:61882603-61882622 | None:intergenic | 40.0% | |
| AGCGTTCTTTGCATGCATTT+GGG | - | chr4.3:61882097-61882116 | MS.gene025602:intron | 40.0% | |
| AGTGATAGGATGAAGGTTGA+AGG | - | chr4.3:61882709-61882728 | MS.gene025602:CDS | 40.0% | |
| AGTTCAGGTATGCTCCATTT+AGG | - | chr4.3:61882435-61882454 | MS.gene025602:intron | 40.0% | |
| ATAAAGGGTTTCGTACGAGA+GGG | - | chr4.3:61880614-61880633 | MS.gene025602:intron | 40.0% | |
| ATCCTATCACTGTACATCGT+TGG | + | chr4.3:61882700-61882719 | None:intergenic | 40.0% | |
| ATGAATCCATTGGCATGCTT+TGG | - | chr4.3:61882297-61882316 | MS.gene025602:intron | 40.0% | |
| CCAGTGGTCATGGAAAAATT+TGG | - | chr4.3:61882030-61882049 | MS.gene025602:intron | 40.0% | |
| GAACTTGATACCTTGAAGAG+TGG | - | chr4.3:61881763-61881782 | MS.gene025602:intron | 40.0% | |
| GAGAAGAGAAACGTGAATCT+GGG | + | chr4.3:61882602-61882621 | None:intergenic | 40.0% | |
| GAGTTATATACGCTGAACCT+CGG | + | chr4.3:61882062-61882081 | None:intergenic | 40.0% | |
| GATGTACAGTGATAGGATGA+AGG | - | chr4.3:61882702-61882721 | MS.gene025602:CDS | 40.0% | |
| GTGATAGGATGAAGGTTGAA+GGG | - | chr4.3:61882710-61882729 | MS.gene025602:CDS | 40.0% | |
| GTTGATATCTGTGGAGGAAT+TGG | - | chr4.3:61882228-61882247 | MS.gene025602:intron | 40.0% | |
| GTTGTATGCATAAGCTACTC+TGG | + | chr4.3:61881427-61881446 | None:intergenic | 40.0% | |
| TACCTCAAAACCACTCTTCA+AGG | + | chr4.3:61881776-61881795 | None:intergenic | 40.0% | |
| TCAGTGTCTGTGCTTCAAAT+GGG | + | chr4.3:61880904-61880923 | None:intergenic | 40.0% | |
| TTAACGCAGTAAGTCGTTCT+GGG | - | chr4.3:61882321-61882340 | MS.gene025602:intron | 40.0% | |
| ! | AAACGTGAATCTGGGATGAA+AGG | + | chr4.3:61882594-61882613 | None:intergenic | 40.0% |
| ! | AGATTTGTCATTTGACCCAG+TGG | - | chr4.3:61882014-61882033 | MS.gene025602:intron | 40.0% |
| ! | CATTTGGGAATAGTTTGTGG+AGG | - | chr4.3:61882112-61882131 | MS.gene025602:intron | 40.0% |
| ! | CCAAATTTTTCCATGACCAC+TGG | + | chr4.3:61882033-61882052 | None:intergenic | 40.0% |
| ! | GAAAAATTTGGAGTTGACCG+AGG | - | chr4.3:61882042-61882061 | MS.gene025602:intron | 40.0% |
| ! | TGAATCTGGGATGAAAGGAA+GGG | + | chr4.3:61882589-61882608 | None:intergenic | 40.0% |
| ! | TGAATTGGTTTCGGTCCTAA+TGG | - | chr4.3:61881261-61881280 | MS.gene025602:intron | 40.0% |
| !! | TACCTTGAAGAGTGGTTTTG+AGG | - | chr4.3:61881771-61881790 | MS.gene025602:intron | 40.0% |
| ATGTCCATCACAAGAGGAAG+AGG | - | chr4.3:61882666-61882685 | MS.gene025602:intron | 45.0% | |
| CACATGAAGAAGAAAGTGGC+TGG | - | chr4.3:61882782-61882801 | MS.gene025602:intron | 45.0% | |
| CTTAACGCAGTAAGTCGTTC+TGG | - | chr4.3:61882320-61882339 | MS.gene025602:intron | 45.0% | |
| CTTCCAAACAGTGTCACAAG+CGG | - | chr4.3:61881116-61881135 | MS.gene025602:intron | 45.0% | |
| GCTGAAAACAGCTTAGGAAG+AGG | - | chr4.3:61881071-61881090 | MS.gene025602:CDS | 45.0% | |
| GCTTCGATGGAGAAAAAGGA+GGG | - | chr4.3:61882824-61882843 | MS.gene025602:intron | 45.0% | |
| GTATTAGCGCTATTACTGCC+AGG | - | chr4.3:61881910-61881929 | MS.gene025602:intron | 45.0% | |
| GTCAGTGTCTGTGCTTCAAA+TGG | + | chr4.3:61880905-61880924 | None:intergenic | 45.0% | |
| GTTAAGCCAAAGCATGCCAA+TGG | + | chr4.3:61882306-61882325 | None:intergenic | 45.0% | |
| TAACCGCTTGTGACACTGTT+TGG | + | chr4.3:61881122-61881141 | None:intergenic | 45.0% | |
| TCACACGAGCATGAATCCAT+TGG | - | chr4.3:61882287-61882306 | MS.gene025602:intron | 45.0% | |
| TCTGTGGAGGAATTGGTTGA+AGG | - | chr4.3:61882235-61882254 | MS.gene025602:intron | 45.0% | |
| TGTCCATCACAAGAGGAAGA+GGG | - | chr4.3:61882667-61882686 | MS.gene025602:CDS | 45.0% | |
| TTGCCACATGTCATGCATCA+AGG | + | chr4.3:61882487-61882506 | None:intergenic | 45.0% | |
| ! | AATCTGGGATGAAAGGAAGG+GGG | + | chr4.3:61882587-61882606 | None:intergenic | 45.0% |
| ! | GAATCTGGGATGAAAGGAAG+GGG | + | chr4.3:61882588-61882607 | None:intergenic | 45.0% |
| ! | GACCCTAATGTGTTATTCGC+TGG | - | chr4.3:61880820-61880839 | MS.gene025602:intron | 45.0% |
| ! | GACTGGTTATATGCCTGCAT+TGG | + | chr4.3:61881724-61881743 | None:intergenic | 45.0% |
| ! | GTGAATCTGGGATGAAAGGA+AGG | + | chr4.3:61882590-61882609 | None:intergenic | 45.0% |
| !!! | TTATTTTTTGTTTTTTAATT+TGG | - | chr4.3:61880762-61880781 | MS.gene025602:intron | 5.0% |
| ACGAAACGCTCGTAACGATC+GGG | + | chr4.3:61880481-61880500 | None:intergenic | 50.0% | |
| GACGAAACGCTCGTAACGAT+CGG | + | chr4.3:61880482-61880501 | None:intergenic | 50.0% | |
| GGATTCATGCTCGTGTGAAG+TGG | + | chr4.3:61882285-61882304 | None:intergenic | 50.0% | |
| GGCCAACGATGTACAGTGAT+AGG | - | chr4.3:61882695-61882714 | MS.gene025602:CDS | 50.0% | |
| GGCTTCGATGGAGAAAAAGG+AGG | - | chr4.3:61882823-61882842 | MS.gene025602:intron | 50.0% | |
| GGTGGCTTCGATGGAGAAAA+AGG | - | chr4.3:61882820-61882839 | MS.gene025602:intron | 50.0% | |
| GTCATTTGACCCAGTGGTCA+TGG | - | chr4.3:61882020-61882039 | MS.gene025602:intron | 50.0% | |
| GTCCATCACAAGAGGAAGAG+GGG | - | chr4.3:61882668-61882687 | MS.gene025602:CDS | 50.0% | |
| TCGATGGAGAAAAAGGAGGG+AGG | - | chr4.3:61882827-61882846 | MS.gene025602:intron | 50.0% | |
| TGGGTAGTACATACATGCGG+AGG | + | chr4.3:61880704-61880723 | None:intergenic | 50.0% | |
| ! | ATGCCTGCATTGGTGAAGAC+TGG | + | chr4.3:61881714-61881733 | None:intergenic | 50.0% |
| ! | GGGAATAGTTTGTGGAGGAC+AGG | - | chr4.3:61882117-61882136 | MS.gene025602:intron | 50.0% |
| AGACACTGACACGTCGACAC+CGG | - | chr4.3:61880915-61880934 | MS.gene025602:intron | 55.0% | |
| AGCGCTATTACTGCCAGGCT+AGG | - | chr4.3:61881915-61881934 | MS.gene025602:intron | 55.0% | |
| CACAAGAGGAAGAGGGGAGA+GGG | - | chr4.3:61882674-61882693 | MS.gene025602:CDS | 55.0% | |
| CAGCCAGTCTTCACCAATGC+AGG | - | chr4.3:61881708-61881727 | MS.gene025602:intron | 55.0% | |
| CTCCCCTCTTCCTCTTGTGA+TGG | + | chr4.3:61882673-61882692 | None:intergenic | 55.0% | |
| GAGAAAAAGGAGGGAGGCGA+CGG | - | chr4.3:61882833-61882852 | MS.gene025602:intron | 55.0% | |
| GATGACACAGGTGGCTTCGA+TGG | - | chr4.3:61882811-61882830 | MS.gene025602:intron | 55.0% | |
| GGGCCTTGATGCATGACATG+TGG | - | chr4.3:61882481-61882500 | MS.gene025602:intron | 55.0% | |
| TCACAAGAGGAAGAGGGGAG+AGG | - | chr4.3:61882673-61882692 | MS.gene025602:CDS | 55.0% | |
| TGGGACGATGATGACACAGG+TGG | - | chr4.3:61882802-61882821 | MS.gene025602:intron | 55.0% | |
| ! | ACTGGCTGGTCGTGTGTATC+TGG | + | chr4.3:61881696-61881715 | None:intergenic | 55.0% |
| ! | CTGCATTGGTGAAGACTGGC+TGG | + | chr4.3:61881710-61881729 | None:intergenic | 55.0% |
| AACGACTAGCGAGCCTAGCC+TGG | + | chr4.3:61881931-61881950 | None:intergenic | 60.0% | |
| GGCTGGGACGATGATGACAC+AGG | - | chr4.3:61882799-61882818 | MS.gene025602:intron | 60.0% | |
| GGGATGAAAGGAAGGGGGCA+TGG | + | chr4.3:61882582-61882601 | None:intergenic | 60.0% | |
| ! | GGTGGTGGTGCACAGAGAAG+AGG | - | chr4.3:61882870-61882889 | MS.gene025602:CDS | 60.0% |
| AAAGGAGGGAGGCGACGGAG+AGG | - | chr4.3:61882838-61882857 | MS.gene025602:intron | 65.0% | |
| ACGGAGAGGAGGAAGAGGGG+TGG | - | chr4.3:61882852-61882871 | MS.gene025602:intron | 65.0% | |
| AGGCGACGGAGAGGAGGAAG+AGG | - | chr4.3:61882847-61882866 | MS.gene025602:intron | 65.0% | |
| GAGAGGAGGAAGAGGGGTGG+TGG | - | chr4.3:61882855-61882874 | MS.gene025602:CDS | 65.0% | |
| GAGCGTTTCGTCGTCCCCGA+AGG | - | chr4.3:61880490-61880509 | MS.gene025602:CDS | 65.0% | |
| GCGACGGAGAGGAGGAAGAG+GGG | - | chr4.3:61882849-61882868 | MS.gene025602:intron | 65.0% | |
| GGCGACGGAGAGGAGGAAGA+GGG | - | chr4.3:61882848-61882867 | MS.gene025602:intron | 65.0% | |
| GGAGGGAGGCGACGGAGAGG+AGG | - | chr4.3:61882841-61882860 | MS.gene025602:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 61880469 | 61882907 | 61880469 | ID=MS.gene025602 |
| chr4.3 | mRNA | 61880469 | 61882907 | 61880469 | ID=MS.gene025602.t1;Parent=MS.gene025602 |
| chr4.3 | exon | 61882855 | 61882907 | 61882855 | ID=MS.gene025602.t1.exon1;Parent=MS.gene025602.t1 |
| chr4.3 | CDS | 61882855 | 61882907 | 61882855 | ID=cds.MS.gene025602.t1;Parent=MS.gene025602.t1 |
| chr4.3 | exon | 61882667 | 61882756 | 61882667 | ID=MS.gene025602.t1.exon2;Parent=MS.gene025602.t1 |
| chr4.3 | CDS | 61882667 | 61882756 | 61882667 | ID=cds.MS.gene025602.t1;Parent=MS.gene025602.t1 |
| chr4.3 | exon | 61882491 | 61882569 | 61882491 | ID=MS.gene025602.t1.exon3;Parent=MS.gene025602.t1 |
| chr4.3 | CDS | 61882491 | 61882569 | 61882491 | ID=cds.MS.gene025602.t1;Parent=MS.gene025602.t1 |
| chr4.3 | exon | 61881584 | 61881679 | 61881584 | ID=MS.gene025602.t1.exon4;Parent=MS.gene025602.t1 |
| chr4.3 | CDS | 61881584 | 61881679 | 61881584 | ID=cds.MS.gene025602.t1;Parent=MS.gene025602.t1 |
| chr4.3 | exon | 61881048 | 61881119 | 61881048 | ID=MS.gene025602.t1.exon5;Parent=MS.gene025602.t1 |
| chr4.3 | CDS | 61881048 | 61881119 | 61881048 | ID=cds.MS.gene025602.t1;Parent=MS.gene025602.t1 |
| chr4.3 | exon | 61880469 | 61880555 | 61880469 | ID=MS.gene025602.t1.exon6;Parent=MS.gene025602.t1 |
| chr4.3 | CDS | 61880469 | 61880555 | 61880469 | ID=cds.MS.gene025602.t1;Parent=MS.gene025602.t1 |
| Gene Sequence |
| Protein sequence |
