Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69921.t1 | XP_003591024.1 | 100 | 105 | 0 | 0 | 1 | 105 | 1 | 105 | 1.90E-51 | 211.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69921.t1 | Q9SS17 | 89.5 | 105 | 11 | 0 | 1 | 105 | 1 | 105 | 5.3e-50 | 198.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69921.t1 | B7FMK4 | 100.0 | 105 | 0 | 0 | 1 | 105 | 1 | 105 | 1.4e-51 | 211.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049580 | MS.gene69921 | 0.811366 | 7.26E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene69921 | 0.832835 | 7.53E-56 | -1.69E-46 |
| MS.gene050320 | MS.gene69921 | 0.814247 | 1.70E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene69921 | 0.84757 | 1.06E-59 | -1.69E-46 |
| MS.gene050916 | MS.gene69921 | 0.802047 | 6.75E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene69921 | 0.817116 | 3.90E-52 | -1.69E-46 |
| MS.gene051063 | MS.gene69921 | 0.825823 | 3.80E-54 | -1.69E-46 |
| MS.gene051330 | MS.gene69921 | 0.862077 | 6.54E-64 | -1.69E-46 |
| MS.gene051343 | MS.gene69921 | 0.8086 | 2.86E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene69921 | 0.805596 | 1.24E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene69921 | 0.870551 | 1.34E-66 | -1.69E-46 |
| MS.gene051748 | MS.gene69921 | 0.859081 | 5.29E-63 | -1.69E-46 |
| MS.gene051756 | MS.gene69921 | 0.811113 | 8.24E-51 | -1.69E-46 |
| MS.gene051850 | MS.gene69921 | 0.804928 | 1.71E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene69921 | 0.822915 | 1.83E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene69921 | 0.874146 | 8.48E-68 | -1.69E-46 |
| MS.gene052947 | MS.gene69921 | 0.873042 | 2.00E-67 | -1.69E-46 |
| MS.gene053109 | MS.gene69921 | 0.820457 | 6.79E-53 | -1.69E-46 |
| MS.gene056075 | MS.gene69921 | 0.845912 | 3.02E-59 | -1.69E-46 |
| MS.gene056091 | MS.gene69921 | 0.802908 | 4.49E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene69921 | 0.843269 | 1.55E-58 | -1.69E-46 |
| MS.gene056986 | MS.gene69921 | 0.801488 | 8.79E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene69921 | 0.866375 | 2.98E-65 | -1.69E-46 |
| MS.gene057234 | MS.gene69921 | 0.824128 | 9.55E-54 | -1.69E-46 |
| MS.gene057890 | MS.gene69921 | -0.801607 | 8.32E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene69921 | 0.805887 | 1.07E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene69921 | 0.80212 | 6.52E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene69921 | 0.842421 | 2.61E-58 | -1.69E-46 |
| MS.gene058852 | MS.gene69921 | 0.810024 | 1.42E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene69921 | 0.816951 | 4.24E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene69921 | 0.812306 | 4.53E-51 | -1.69E-46 |
| MS.gene059227 | MS.gene69921 | 0.831617 | 1.51E-55 | -1.69E-46 |
| MS.gene06001 | MS.gene69921 | 0.886884 | 2.32E-72 | -1.69E-46 |
| MS.gene06011 | MS.gene69921 | 0.851628 | 7.84E-61 | -1.69E-46 |
| MS.gene060429 | MS.gene69921 | 0.827405 | 1.59E-54 | -1.69E-46 |
| MS.gene060586 | MS.gene69921 | 0.814342 | 1.62E-51 | -1.69E-46 |
| MS.gene060763 | MS.gene69921 | 0.834741 | 2.51E-56 | -1.69E-46 |
| MS.gene060830 | MS.gene69921 | 0.804766 | 1.85E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055646 | MS.gene69921 | PPI |
| MS.gene005152 | MS.gene69921 | PPI |
| MS.gene82426 | MS.gene69921 | PPI |
| MS.gene41083 | MS.gene69921 | PPI |
| MS.gene69921 | MS.gene44023 | PPI |
| MS.gene028153 | MS.gene69921 | PPI |
| MS.gene41081 | MS.gene69921 | PPI |
| MS.gene68265 | MS.gene69921 | PPI |
| MS.gene034801 | MS.gene69921 | PPI |
| MS.gene025602 | MS.gene69921 | PPI |
| MS.gene72768 | MS.gene69921 | PPI |
| MS.gene83444 | MS.gene69921 | PPI |
| MS.gene69147 | MS.gene69921 | PPI |
| MS.gene69921 | MS.gene70805 | PPI |
| MS.gene44023 | MS.gene69921 | PPI |
| MS.gene54903 | MS.gene69921 | PPI |
| MS.gene055644 | MS.gene69921 | PPI |
| MS.gene70805 | MS.gene69921 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69921.t1 | MTR_1g081410 | 100.000 | 137 | 0 | 0 | 1 | 137 | 1 | 137 | 2.53e-96 | 273 |
| MS.gene69921.t1 | MTR_7g114640 | 85.401 | 137 | 19 | 1 | 1 | 137 | 1 | 136 | 6.19e-80 | 232 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69921.t1 | AT5G28060 | 87.121 | 132 | 17 | 0 | 1 | 132 | 1 | 132 | 3.98e-84 | 242 |
| MS.gene69921.t1 | AT3G04920 | 90.152 | 132 | 13 | 0 | 1 | 132 | 1 | 132 | 8.64e-77 | 224 |
| MS.gene69921.t1 | AT3G04920 | 85.437 | 103 | 14 | 1 | 1 | 102 | 1 | 103 | 7.31e-53 | 162 |
Find 36 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAGTTCAGAACTCATTT+TGG | 0.192309 | 1.4:+66006339 | MS.gene69921:CDS |
| GGTGGCAAGTCCACTGGTTT+TGG | 0.267395 | 1.4:+66006363 | MS.gene69921:CDS |
| ACCCTAACAAGTCTGTATTT+TGG | 0.279167 | 1.4:-66006426 | None:intergenic |
| CCTGTTTGTCATGAATTTCC+TGG | 0.293677 | 1.4:-66004927 | None:intergenic |
| AACCAAAATACAGACTTGTT+AGG | 0.354436 | 1.4:+66006424 | MS.gene69921:CDS |
| AAATGAAGGAAAGAAAGAAC+AGG | 0.391792 | 1.4:+66007434 | MS.gene69921:CDS |
| TTGGACACATTTGCCCTCCC+TGG | 0.411146 | 1.4:-66005694 | None:intergenic |
| CTTGGCAGCATCACCAGCCT+TGG | 0.412083 | 1.4:-66007578 | None:intergenic |
| AAAACTCACAAATTGCTTCC+TGG | 0.412532 | 1.4:-66004957 | None:intergenic |
| GTCATTGATGTTCTTCATCC+AGG | 0.419765 | 1.4:+66005676 | MS.gene69921:CDS |
| GCTGGTGATGCTGCCAAGGC+TGG | 0.425056 | 1.4:+66007583 | MS.gene69921:CDS |
| TTTGGAGGTGGCAAGTCCAC+TGG | 0.458362 | 1.4:+66006357 | MS.gene69921:CDS |
| TTATTTCTTCTTGCCAGCCT+TGG | 0.476966 | 1.4:-66007596 | None:intergenic |
| CCAGGAAATTCATGACAAAC+AGG | 0.483747 | 1.4:+66004927 | MS.gene69921:CDS |
| TGACAAACAGGCTTCTCTCC+AGG | 0.487847 | 1.4:+66004939 | MS.gene69921:CDS |
| GGCTGAGCTAAAGGAGAAGC+TGG | 0.492085 | 1.4:+66006275 | MS.gene69921:intron |
| GTAGAATGGACTTGATACTA+AGG | 0.495750 | 1.4:+66007393 | MS.gene69921:intron |
| CAAGGCTGGTGATGCTGCCA+AGG | 0.500785 | 1.4:+66007579 | MS.gene69921:CDS |
| ACCAAAATACAGACTTGTTA+GGG | 0.511637 | 1.4:+66006425 | MS.gene69921:CDS |
| AATCATAACCATGGCGGACA+AGG | 0.511646 | 1.4:+66004889 | None:intergenic |
| GAAGATCCGTGGAGTTAAGA+AGG | 0.518538 | 1.4:+66007462 | MS.gene69921:CDS |
| AGCTAAAGGAGAAGCTGGCT+AGG | 0.550489 | 1.4:+66006280 | MS.gene69921:CDS |
| ATACTAAGGTTGAAAAGTCA+AGG | 0.557383 | 1.4:+66007407 | MS.gene69921:CDS |
| GGCTAGGATTTATGATGTGA+AGG | 0.559469 | 1.4:+66006296 | MS.gene69921:CDS |
| TGGTGTGAAGGCTGAGCTAA+AGG | 0.565585 | 1.4:+66006266 | MS.gene69921:intron |
| GCTTTACCTTCTTAACTCCA+CGG | 0.569745 | 1.4:-66007468 | None:intergenic |
| TCATTGATGTTCTTCATCCA+GGG | 0.571853 | 1.4:+66005677 | MS.gene69921:CDS |
| AAAGTCAAGGAAGCAAATGA+AGG | 0.574321 | 1.4:+66007420 | MS.gene69921:CDS |
| TGTCACTGCCTTGTCCGCCA+TGG | 0.587558 | 1.4:-66004897 | None:intergenic |
| AGGGAGGGCAAATGTGTCCA+AGG | 0.599653 | 1.4:+66005696 | MS.gene69921:CDS |
| TGATGTTCTTCATCCAGGGA+GGG | 0.609379 | 1.4:+66005681 | MS.gene69921:CDS |
| AACAGGGCAAAGAAGATCCG+TGG | 0.612698 | 1.4:+66007451 | MS.gene69921:CDS |
| AGGCAGTGACAATCAGAACC+AGG | 0.646151 | 1.4:+66004909 | MS.gene69921:CDS |
| ATAGATCAAACCAAAACCAG+TGG | 0.662445 | 1.4:-66006373 | None:intergenic |
| TTGATGTTCTTCATCCAGGG+AGG | 0.668249 | 1.4:+66005680 | MS.gene69921:CDS |
| AATGAAGGAAAGAAAGAACA+GGG | 0.674567 | 1.4:+66007435 | MS.gene69921:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACCACAAAAAAAAAAAAAA+AGG | - | chr1.4:66006498-66006517 | None:intergenic | 15.0% |
| !! | AATTGCAAATTTAAATCAAT+AGG | - | chr1.4:66007322-66007341 | None:intergenic | 15.0% |
| !! | ATATATAAAACAAGAAACAT+AGG | - | chr1.4:66006013-66006032 | None:intergenic | 15.0% |
| !! | CTATTACCAAATAAATAATA+AGG | - | chr1.4:66006050-66006069 | None:intergenic | 15.0% |
| !! | CTTGAAAAAAATAAATGAAT+AGG | - | chr1.4:66006833-66006852 | None:intergenic | 15.0% |
| !! | GTATTATAAACTTATGATAT+TGG | + | chr1.4:66006215-66006234 | MS.gene69921:intron | 15.0% |
| !!! | AACCTTTTTTTTTTTTTTTG+TGG | + | chr1.4:66006493-66006512 | MS.gene69921:intron | 15.0% |
| !!! | ATATTATAGTTTTCTTTTCT+TGG | + | chr1.4:66005816-66005835 | MS.gene69921:intron | 15.0% |
| !!! | ATTATGCCTTATTATTTATT+TGG | + | chr1.4:66006041-66006060 | MS.gene69921:intron | 15.0% |
| !!! | ATTTTAACAGTTTGATAAAA+AGG | - | chr1.4:66007008-66007027 | None:intergenic | 15.0% |
| !!! | GTTTTTATTTTAAATGGATT+AGG | + | chr1.4:66005277-66005296 | MS.gene69921:intron | 15.0% |
| !!! | TTTTAACAGTTTGATAAAAA+GGG | - | chr1.4:66007007-66007026 | None:intergenic | 15.0% |
| !! | AAAAAACAAACAAATCCATT+TGG | - | chr1.4:66006640-66006659 | None:intergenic | 20.0% |
| !! | AATATATCAGCCAAATATAA+AGG | - | chr1.4:66005971-66005990 | None:intergenic | 20.0% |
| !! | AGTAAATTTAAATGGTAAAC+TGG | + | chr1.4:66005219-66005238 | MS.gene69921:intron | 20.0% |
| !! | AGTTTACCATTTAAATTTAC+TGG | - | chr1.4:66005220-66005239 | None:intergenic | 20.0% |
| !! | CAATTTCATACAGTATTATT+TGG | + | chr1.4:66006111-66006130 | MS.gene69921:intron | 20.0% |
| !! | TATAGAACAATCAAAAGATT+TGG | - | chr1.4:66005466-66005485 | None:intergenic | 20.0% |
| !! | TCTAAACCAGTAAATTTAAA+TGG | + | chr1.4:66005211-66005230 | MS.gene69921:intron | 20.0% |
| !! | TGTATGTTTATATGTTAGAT+AGG | + | chr1.4:66005721-66005740 | MS.gene69921:intron | 20.0% |
| !! | TTAATTGCATTTCTATATGT+AGG | + | chr1.4:66005884-66005903 | MS.gene69921:intron | 20.0% |
| !! | TTATGAAGAAATAGATAACA+AGG | - | chr1.4:66004988-66005007 | None:intergenic | 20.0% |
| !! | TTTGATCATTCCTTTATATT+TGG | + | chr1.4:66005958-66005977 | MS.gene69921:intron | 20.0% |
| !!! | AATGGATTTGTTTGTTTTTT+CGG | + | chr1.4:66006640-66006659 | MS.gene69921:intron | 20.0% |
| !!! | AGGGTTTTATATTATGTTAT+TGG | + | chr1.4:66005604-66005623 | MS.gene69921:intron | 20.0% |
| !!! | CTATCATTTTTTTTATAGTG+TGG | + | chr1.4:66005570-66005589 | MS.gene69921:intron | 20.0% |
| !!! | CTGGTTTTTTTTTGTTTTTT+GGG | + | chr1.4:66005246-66005265 | MS.gene69921:intron | 20.0% |
| !!! | GGTTTGGTTTTTATTTTAAA+TGG | + | chr1.4:66005271-66005290 | MS.gene69921:intron | 20.0% |
| !!! | TATTTCTGTTAAATAGTTTC+TGG | + | chr1.4:66006919-66006938 | MS.gene69921:intron | 20.0% |
| !!! | TCTGGTTTTTTTTTGTTTTT+TGG | + | chr1.4:66005245-66005264 | MS.gene69921:intron | 20.0% |
| ! | AAACTCAAACCTATATTGTA+TGG | - | chr1.4:66006074-66006093 | None:intergenic | 25.0% |
| ! | AACATAAATGTTAACAACCA+GGG | - | chr1.4:66006595-66006614 | None:intergenic | 25.0% |
| ! | AAGGGATTGAAATTAAATGT+AGG | - | chr1.4:66006989-66007008 | None:intergenic | 25.0% |
| ! | ACATATAAACATACATACCT+TGG | - | chr1.4:66005716-66005735 | None:intergenic | 25.0% |
| ! | AGGGATTGAAATTAAATGTA+GGG | - | chr1.4:66006988-66007007 | None:intergenic | 25.0% |
| ! | ATAAGCATATAATCACAACT+AGG | - | chr1.4:66005367-66005386 | None:intergenic | 25.0% |
| ! | ATAGTGTGATTCAGATAATT+AGG | + | chr1.4:66005500-66005519 | MS.gene69921:intron | 25.0% |
| ! | TAAGCATATAATCACAACTA+GGG | - | chr1.4:66005366-66005385 | None:intergenic | 25.0% |
| ! | TAGTGTGATTCAGATAATTA+GGG | + | chr1.4:66005501-66005520 | MS.gene69921:intron | 25.0% |
| ! | TGAATACAAAAACAGTGTTT+GGG | - | chr1.4:66006323-66006342 | None:intergenic | 25.0% |
| ! | TTGAATACAAAAACAGTGTT+TGG | - | chr1.4:66006324-66006343 | None:intergenic | 25.0% |
| !! | CAAGAGAGTACATAATTATA+AGG | - | chr1.4:66007093-66007112 | None:intergenic | 25.0% |
| !! | TAGTTTAGAGATAATTTTGC+TGG | + | chr1.4:66007057-66007076 | MS.gene69921:intron | 25.0% |
| !! | TCTTTTCTTCTATTGTAGAA+TGG | + | chr1.4:66007379-66007398 | MS.gene69921:intron | 25.0% |
| !!! | CTTTCTAGCTTTCTAATTAA+AGG | + | chr1.4:66005846-66005865 | MS.gene69921:intron | 25.0% |
| !!! | GGATTAGGTTTTTCAAATAT+GGG | + | chr1.4:66005292-66005311 | MS.gene69921:intron | 25.0% |
| !!! | TAAATTTACTGGTTTAGAAC+CGG | - | chr1.4:66005209-66005228 | None:intergenic | 25.0% |
| !!! | TGGATTAGGTTTTTCAAATA+TGG | + | chr1.4:66005291-66005310 | MS.gene69921:intron | 25.0% |
| !!! | TTGTTTGTTTTTTCGGAATT+TGG | + | chr1.4:66006647-66006666 | MS.gene69921:intron | 25.0% |
| !!! | TTTTTTTTTGTTTTTTGGGC+TGG | + | chr1.4:66005250-66005269 | MS.gene69921:intron | 25.0% |
| AAATCCATTAGCCAAAAAGA+TGG | - | chr1.4:66006156-66006175 | None:intergenic | 30.0% | |
| AAATGAAGGAAAGAAAGAAC+AGG | + | chr1.4:66007434-66007453 | MS.gene69921:CDS | 30.0% | |
| AAGCATATAATCACAACTAG+GGG | - | chr1.4:66005365-66005384 | None:intergenic | 30.0% | |
| AATGAAGGAAAGAAAGAACA+GGG | + | chr1.4:66007435-66007454 | MS.gene69921:CDS | 30.0% | |
| ACGAGATCTGATTTCAATTA+GGG | - | chr1.4:66005012-66005031 | None:intergenic | 30.0% | |
| ACTAAATTCACAAGCAAATG+AGG | - | chr1.4:66006799-66006818 | None:intergenic | 30.0% | |
| ATACTAAGGTTGAAAAGTCA+AGG | + | chr1.4:66007407-66007426 | MS.gene69921:CDS | 30.0% | |
| ATAGTGTGGTTCAGATAATT+AGG | + | chr1.4:66005584-66005603 | MS.gene69921:intron | 30.0% | |
| ATTCAACTCCATTGTGATTA+GGG | + | chr1.4:66005044-66005063 | MS.gene69921:intron | 30.0% | |
| CAACATAAATGTTAACAACC+AGG | - | chr1.4:66006596-66006615 | None:intergenic | 30.0% | |
| CTGGTTGTTAACATTTATGT+TGG | + | chr1.4:66006594-66006613 | MS.gene69921:intron | 30.0% | |
| GATTCATCAACTACATTAAC+AGG | - | chr1.4:66007297-66007316 | None:intergenic | 30.0% | |
| GATTGAAATTAAATGTAGGG+TGG | - | chr1.4:66006985-66007004 | None:intergenic | 30.0% | |
| GGTAATAGACCATACAATAT+AGG | + | chr1.4:66006062-66006081 | MS.gene69921:intron | 30.0% | |
| TACGAGATCTGATTTCAATT+AGG | - | chr1.4:66005013-66005032 | None:intergenic | 30.0% | |
| TAGTGTGGTTCAGATAATTA+GGG | + | chr1.4:66005585-66005604 | MS.gene69921:intron | 30.0% | |
| TATTCAACTCCATTGTGATT+AGG | + | chr1.4:66005043-66005062 | MS.gene69921:intron | 30.0% | |
| TCAAATCATAAACACAACGA+CGG | - | chr1.4:66005136-66005155 | None:intergenic | 30.0% | |
| TTCACACCAAACACAATAAA+AGG | - | chr1.4:66006255-66006274 | None:intergenic | 30.0% | |
| TTGAAAAGAAGTTGCAACTA+AGG | + | chr1.4:66006180-66006199 | MS.gene69921:intron | 30.0% | |
| ! | AACCAAAATACAGACTTGTT+AGG | + | chr1.4:66006424-66006443 | MS.gene69921:CDS | 30.0% |
| ! | ACAATTTTATTCTGTGTTGC+AGG | + | chr1.4:66005654-66005673 | MS.gene69921:intron | 30.0% |
| ! | ATAACTCTTGTCCATCTTTT+TGG | + | chr1.4:66006142-66006161 | MS.gene69921:intron | 30.0% |
| ! | CTTATGATATTGGTTGAACT+TGG | + | chr1.4:66006225-66006244 | MS.gene69921:intron | 30.0% |
| ! | GGTTTACCTTTTATTGTGTT+TGG | + | chr1.4:66006246-66006265 | MS.gene69921:intron | 30.0% |
| ! | GTTAATTCTGTCTTTTCTCT+TGG | + | chr1.4:66006451-66006470 | MS.gene69921:intron | 30.0% |
| ! | TGTCTTTTCTCTTGGATAAT+TGG | + | chr1.4:66006459-66006478 | MS.gene69921:intron | 30.0% |
| ! | TTTGCTTGTAGTGTTGTTAT+TGG | + | chr1.4:66007193-66007212 | MS.gene69921:intron | 30.0% |
| !! | ACCAAAATACAGACTTGTTA+GGG | + | chr1.4:66006425-66006444 | MS.gene69921:CDS | 30.0% |
| !! | TATTTTCTAGTGCACAAACT+TGG | - | chr1.4:66005917-66005936 | None:intergenic | 30.0% |
| !! | TTCAAGTTCAGAACTCATTT+TGG | + | chr1.4:66006339-66006358 | MS.gene69921:CDS | 30.0% |
| !!! | ACTTTTCTGAAATTTGCCAA+GGG | + | chr1.4:66007262-66007281 | MS.gene69921:intron | 30.0% |
| !!! | TAAATGGTAAACTGGTTTTC+TGG | + | chr1.4:66005227-66005246 | MS.gene69921:intron | 30.0% |
| !!! | TTTTATTGTGTTTGGTGTGA+AGG | + | chr1.4:66006254-66006273 | MS.gene69921:intron | 30.0% |
| AAAACTCACAAATTGCTTCC+TGG | - | chr1.4:66004960-66004979 | None:intergenic | 35.0% | |
| AAAGTCAAGGAAGCAAATGA+AGG | + | chr1.4:66007420-66007439 | MS.gene69921:CDS | 35.0% | |
| AGTGTGATTCAGATACATAG+TGG | + | chr1.4:66005544-66005563 | MS.gene69921:intron | 35.0% | |
| AGTTATTTGTATTGCCTGCT+GGG | + | chr1.4:66007220-66007239 | MS.gene69921:intron | 35.0% | |
| ATAGATCAAACCAAAACCAG+TGG | - | chr1.4:66006376-66006395 | None:intergenic | 35.0% | |
| ATAGGAAACTATCTGCTTGA+TGG | - | chr1.4:66005995-66006014 | None:intergenic | 35.0% | |
| ATGAACAACCCTAATCACAA+TGG | - | chr1.4:66005055-66005074 | None:intergenic | 35.0% | |
| CAACTACATTAACAGGCAAA+AGG | - | chr1.4:66007290-66007309 | None:intergenic | 35.0% | |
| TAGTTATTTGTATTGCCTGC+TGG | + | chr1.4:66007219-66007238 | MS.gene69921:intron | 35.0% | |
| TCATTGATGTTCTTCATCCA+GGG | + | chr1.4:66005677-66005696 | MS.gene69921:CDS | 35.0% | |
| TTTCTCTTGGATAATTGGAC+TGG | + | chr1.4:66006464-66006483 | MS.gene69921:intron | 35.0% | |
| ! | AAGTTCAGAACTCATTTTGG+AGG | + | chr1.4:66006342-66006361 | MS.gene69921:CDS | 35.0% |
| ! | ACCCTAACAAGTCTGTATTT+TGG | - | chr1.4:66006429-66006448 | None:intergenic | 35.0% |
| ! | AGATGCTATTGAAACTTGCT+TGG | + | chr1.4:66005781-66005800 | MS.gene69921:intron | 35.0% |
| ! | CGTGTTTGTTAACAAGTGAA+GGG | + | chr1.4:66006954-66006973 | MS.gene69921:intron | 35.0% |
| ! | GATTCCTGAGTTGAATAAAC+CGG | + | chr1.4:66005187-66005206 | MS.gene69921:intron | 35.0% |
| ! | GTAGAATGGACTTGATACTA+AGG | + | chr1.4:66007393-66007412 | MS.gene69921:intron | 35.0% |
| !! | ACATCAGTGTTTTTGCCAAA+TGG | + | chr1.4:66006622-66006641 | MS.gene69921:intron | 35.0% |
| !! | CATTGTATTTTTGCAGACCA+AGG | + | chr1.4:66007561-66007580 | MS.gene69921:intron | 35.0% |
| !! | TAGGTTTTTCAAATATGGGC+AGG | + | chr1.4:66005296-66005315 | MS.gene69921:intron | 35.0% |
| !! | TGATTTAGTTTGCTATTCCC+TGG | + | chr1.4:66006575-66006594 | MS.gene69921:intron | 35.0% |
| !!! | CACTTTTCTGAAATTTGCCA+AGG | + | chr1.4:66007261-66007280 | MS.gene69921:intron | 35.0% |
| !!! | TGCACTTCCTTTTGATTTGA+CGG | + | chr1.4:66006879-66006898 | MS.gene69921:intron | 35.0% |
| !!! | TTGTCCATCTTTTTGGCTAA+TGG | + | chr1.4:66006149-66006168 | MS.gene69921:intron | 35.0% |
| !!! | TTTTGTTTTTTGGGCTGGTT+TGG | + | chr1.4:66005255-66005274 | MS.gene69921:intron | 35.0% |
| ACAAATTCAAACGTGAGCAC+TGG | - | chr1.4:66007126-66007145 | None:intergenic | 40.0% | |
| CATCAACGACCGAAAATACA+CGG | - | chr1.4:66005098-66005117 | None:intergenic | 40.0% | |
| CCAGGAAATTCATGACAAAC+AGG | + | chr1.4:66004927-66004946 | MS.gene69921:CDS | 40.0% | |
| CCTGTTTGTCATGAATTTCC+TGG | - | chr1.4:66004930-66004949 | None:intergenic | 40.0% | |
| GCTTTACCTTCTTAACTCCA+CGG | - | chr1.4:66007471-66007490 | None:intergenic | 40.0% | |
| GGCTAGGATTTATGATGTGA+AGG | + | chr1.4:66006296-66006315 | MS.gene69921:CDS | 40.0% | |
| GTCATTGATGTTCTTCATCC+AGG | + | chr1.4:66005676-66005695 | MS.gene69921:CDS | 40.0% | |
| TCACGTTTGAATTTGTCCAG+TGG | + | chr1.4:66007130-66007149 | MS.gene69921:intron | 40.0% | |
| TGGCAAAAACACTGATGTTG+AGG | - | chr1.4:66006620-66006639 | None:intergenic | 40.0% | |
| ! | AGAACCGGTTTATTCAACTC+AGG | - | chr1.4:66005194-66005213 | None:intergenic | 40.0% |
| ! | ATTTTCGGTCGTTGATGTCA+TGG | + | chr1.4:66005101-66005120 | MS.gene69921:intron | 40.0% |
| ! | CAAACCAGACCGTGTATTTT+CGG | + | chr1.4:66005086-66005105 | MS.gene69921:intron | 40.0% |
| ! | CTAGGGGTGTGCAAAAAATT+TGG | - | chr1.4:66005349-66005368 | None:intergenic | 40.0% |
| ! | GAAAATACACGGTCTGGTTT+GGG | - | chr1.4:66005087-66005106 | None:intergenic | 40.0% |
| ! | GCGTGTTTGTTAACAAGTGA+AGG | + | chr1.4:66006953-66006972 | MS.gene69921:intron | 40.0% |
| ! | GGAAGTGCAAAGTCAAACAT+CGG | - | chr1.4:66006868-66006887 | None:intergenic | 40.0% |
| ! | TTATTTCTTCTTGCCAGCCT+TGG | - | chr1.4:66007599-66007618 | None:intergenic | 40.0% |
| ! | TTTTCAAATATGGGCAGGTG+TGG | + | chr1.4:66005301-66005320 | MS.gene69921:intron | 40.0% |
| !! | TGTGGTTGTTGATTTGGTCA+TGG | + | chr1.4:66005319-66005338 | MS.gene69921:intron | 40.0% |
| !! | TTCAGAACTCATTTTGGAGG+TGG | + | chr1.4:66006345-66006364 | MS.gene69921:CDS | 40.0% |
| !!! | GCACTTCCTTTTGATTTGAC+GGG | + | chr1.4:66006880-66006899 | MS.gene69921:intron | 40.0% |
| CATAAACACAACGACGGTGA+TGG | - | chr1.4:66005130-66005149 | None:intergenic | 45.0% | |
| CGAAAATACACGGTCTGGTT+TGG | - | chr1.4:66005088-66005107 | None:intergenic | 45.0% | |
| GAAGATCCGTGGAGTTAAGA+AGG | + | chr1.4:66007462-66007481 | MS.gene69921:CDS | 45.0% | |
| TACGCTCCCGTCAAATCAAA+AGG | - | chr1.4:66006889-66006908 | None:intergenic | 45.0% | |
| TGATGTTCTTCATCCAGGGA+GGG | + | chr1.4:66005681-66005700 | MS.gene69921:CDS | 45.0% | |
| TTGATGTTCTTCATCCAGGG+AGG | + | chr1.4:66005680-66005699 | MS.gene69921:CDS | 45.0% | |
| ! | TGATTTGACGGGAGCGTATT+TGG | + | chr1.4:66006891-66006910 | MS.gene69921:intron | 45.0% |
| !! | GTATTTTTGCAGACCAAGGC+TGG | + | chr1.4:66007565-66007584 | MS.gene69921:intron | 45.0% |
| AACAGGGCAAAGAAGATCCG+TGG | + | chr1.4:66007451-66007470 | MS.gene69921:CDS | 50.0% | |
| AAGTAGAACATGTGCCCAGC+AGG | - | chr1.4:66007237-66007256 | None:intergenic | 50.0% | |
| ACGACCGAAAATACACGGTC+TGG | - | chr1.4:66005093-66005112 | None:intergenic | 50.0% | |
| ACTGACAGAACTGACACCAC+TGG | - | chr1.4:66007149-66007168 | None:intergenic | 50.0% | |
| AGCTAAAGGAGAAGCTGGCT+AGG | + | chr1.4:66006280-66006299 | MS.gene69921:CDS | 50.0% | |
| AGGCAGTGACAATCAGAACC+AGG | + | chr1.4:66004909-66004928 | MS.gene69921:CDS | 50.0% | |
| TAACAGGCAAAAGGAGCCCT+TGG | - | chr1.4:66007281-66007300 | None:intergenic | 50.0% | |
| TGACAAACAGGCTTCTCTCC+AGG | + | chr1.4:66004939-66004958 | MS.gene69921:CDS | 50.0% | |
| TGGTGTGAAGGCTGAGCTAA+AGG | + | chr1.4:66006266-66006285 | MS.gene69921:intron | 50.0% | |
| ! | GGCAGGTGTGGTTGTTGATT+TGG | + | chr1.4:66005313-66005332 | MS.gene69921:intron | 50.0% |
| AGGGAGGGCAAATGTGTCCA+AGG | + | chr1.4:66005696-66005715 | MS.gene69921:CDS | 55.0% | |
| GGCTGAGCTAAAGGAGAAGC+TGG | + | chr1.4:66006275-66006294 | MS.gene69921:intron | 55.0% | |
| TTGGACACATTTGCCCTCCC+TGG | - | chr1.4:66005697-66005716 | None:intergenic | 55.0% | |
| TTTGGAGGTGGCAAGTCCAC+TGG | + | chr1.4:66006357-66006376 | MS.gene69921:CDS | 55.0% | |
| !!! | GGTGGCAAGTCCACTGGTTT+TGG | + | chr1.4:66006363-66006382 | MS.gene69921:CDS | 55.0% |
| CTTGGCAGCATCACCAGCCT+TGG | - | chr1.4:66007581-66007600 | None:intergenic | 60.0% | |
| ! | CAAGGCTGGTGATGCTGCCA+AGG | + | chr1.4:66007579-66007598 | MS.gene69921:CDS | 60.0% |
| ! | GCTGGTGATGCTGCCAAGGC+TGG | + | chr1.4:66007583-66007602 | MS.gene69921:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 66004899 | 66007618 | 66004899 | ID=MS.gene69921 |
| chr1.4 | mRNA | 66004899 | 66007618 | 66004899 | ID=MS.gene69921.t1;Parent=MS.gene69921 |
| chr1.4 | exon | 66004899 | 66004970 | 66004899 | ID=MS.gene69921.t1.exon1;Parent=MS.gene69921.t1 |
| chr1.4 | CDS | 66004899 | 66004970 | 66004899 | ID=cds.MS.gene69921.t1;Parent=MS.gene69921.t1 |
| chr1.4 | exon | 66005676 | 66005717 | 66005676 | ID=MS.gene69921.t1.exon2;Parent=MS.gene69921.t1 |
| chr1.4 | CDS | 66005676 | 66005717 | 66005676 | ID=cds.MS.gene69921.t1;Parent=MS.gene69921.t1 |
| chr1.4 | exon | 66006276 | 66006446 | 66006276 | ID=MS.gene69921.t1.exon3;Parent=MS.gene69921.t1 |
| chr1.4 | CDS | 66006276 | 66006446 | 66006276 | ID=cds.MS.gene69921.t1;Parent=MS.gene69921.t1 |
| chr1.4 | exon | 66007397 | 66007483 | 66007397 | ID=MS.gene69921.t1.exon4;Parent=MS.gene69921.t1 |
| chr1.4 | CDS | 66007397 | 66007483 | 66007397 | ID=cds.MS.gene69921.t1;Parent=MS.gene69921.t1 |
| chr1.4 | exon | 66007577 | 66007618 | 66007577 | ID=MS.gene69921.t1.exon5;Parent=MS.gene69921.t1 |
| chr1.4 | CDS | 66007577 | 66007618 | 66007577 | ID=cds.MS.gene69921.t1;Parent=MS.gene69921.t1 |
| Gene Sequence |
| Protein sequence |
