Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44023.t1 | XP_003591024.1 | 100 | 105 | 0 | 0 | 1 | 105 | 1 | 105 | 1.90E-51 | 211.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44023.t1 | Q9SS17 | 89.5 | 105 | 11 | 0 | 1 | 105 | 1 | 105 | 5.3e-50 | 198.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44023.t1 | B7FMK4 | 100.0 | 105 | 0 | 0 | 1 | 105 | 1 | 105 | 1.4e-51 | 211.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene44023 | 0.817443 | 3.29E-52 | -1.69E-46 |
| MS.gene049873 | MS.gene44023 | 0.810978 | 8.81E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene44023 | 0.829947 | 3.87E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene44023 | 0.81706 | 4.01E-52 | -1.69E-46 |
| MS.gene050916 | MS.gene44023 | 0.832326 | 1.01E-55 | -1.69E-46 |
| MS.gene051328 | MS.gene44023 | 0.803299 | 3.72E-49 | -1.69E-46 |
| MS.gene051330 | MS.gene44023 | 0.866692 | 2.37E-65 | -1.69E-46 |
| MS.gene05134 | MS.gene44023 | 0.825613 | 4.26E-54 | -1.69E-46 |
| MS.gene051700 | MS.gene44023 | 0.829474 | 5.05E-55 | -1.69E-46 |
| MS.gene051746 | MS.gene44023 | 0.841266 | 5.27E-58 | -1.69E-46 |
| MS.gene051748 | MS.gene44023 | 0.821519 | 3.87E-53 | -1.69E-46 |
| MS.gene05188 | MS.gene44023 | 0.821043 | 4.98E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene44023 | 0.86047 | 2.02E-63 | -1.69E-46 |
| MS.gene052133 | MS.gene44023 | 0.823653 | 1.23E-53 | -1.69E-46 |
| MS.gene052947 | MS.gene44023 | 0.890153 | 1.27E-73 | -1.69E-46 |
| MS.gene054328 | MS.gene44023 | 0.801161 | 1.03E-48 | -1.69E-46 |
| MS.gene05476 | MS.gene44023 | 0.807265 | 5.50E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene44023 | 0.843989 | 9.98E-59 | -1.69E-46 |
| MS.gene055580 | MS.gene44023 | -0.803459 | 3.45E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene44023 | 0.850561 | 1.57E-60 | -1.69E-46 |
| MS.gene056043 | MS.gene44023 | -0.807039 | 6.14E-50 | -1.69E-46 |
| MS.gene056075 | MS.gene44023 | 0.841677 | 4.11E-58 | -1.69E-46 |
| MS.gene056091 | MS.gene44023 | 0.839606 | 1.43E-57 | -1.69E-46 |
| MS.gene056215 | MS.gene44023 | 0.803868 | 2.84E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene44023 | 0.844934 | 5.56E-59 | -1.69E-46 |
| MS.gene057094 | MS.gene44023 | 0.810774 | 9.75E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene44023 | 0.821822 | 3.29E-53 | -1.69E-46 |
| MS.gene058238 | MS.gene44023 | 0.817721 | 2.85E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene44023 | 0.802991 | 4.31E-49 | -1.69E-46 |
| MS.gene059227 | MS.gene44023 | 0.830603 | 2.68E-55 | -1.69E-46 |
| MS.gene05954 | MS.gene44023 | 0.821485 | 3.94E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene44023 | 0.875785 | 2.34E-68 | -1.69E-46 |
| MS.gene06011 | MS.gene44023 | 0.810107 | 1.36E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene44023 | 0.811964 | 5.38E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene44023 | 0.885096 | 1.09E-71 | -1.69E-46 |
| MS.gene060586 | MS.gene44023 | 0.81622 | 6.19E-52 | -1.69E-46 |
| MS.gene060763 | MS.gene44023 | 0.817174 | 3.78E-52 | -1.69E-46 |
| MS.gene060830 | MS.gene44023 | 0.809236 | 2.09E-50 | -1.69E-46 |
| MS.gene060917 | MS.gene44023 | 0.807168 | 5.77E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68265 | MS.gene44023 | PPI |
| MS.gene034801 | MS.gene44023 | PPI |
| MS.gene025602 | MS.gene44023 | PPI |
| MS.gene54903 | MS.gene44023 | PPI |
| MS.gene055644 | MS.gene44023 | PPI |
| MS.gene69921 | MS.gene44023 | PPI |
| MS.gene70805 | MS.gene44023 | PPI |
| MS.gene44023 | MS.gene70805 | PPI |
| MS.gene44023 | MS.gene69921 | PPI |
| MS.gene055646 | MS.gene44023 | PPI |
| MS.gene028153 | MS.gene44023 | PPI |
| MS.gene005152 | MS.gene44023 | PPI |
| MS.gene41083 | MS.gene44023 | PPI |
| MS.gene72768 | MS.gene44023 | PPI |
| MS.gene82426 | MS.gene44023 | PPI |
| MS.gene83444 | MS.gene44023 | PPI |
| MS.gene69147 | MS.gene44023 | PPI |
| MS.gene41081 | MS.gene44023 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44023.t1 | MTR_1g081410 | 100.000 | 137 | 0 | 0 | 1 | 137 | 1 | 137 | 2.53e-96 | 273 |
| MS.gene44023.t1 | MTR_7g114640 | 85.401 | 137 | 19 | 1 | 1 | 137 | 1 | 136 | 6.19e-80 | 232 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44023.t1 | AT5G28060 | 87.121 | 132 | 17 | 0 | 1 | 132 | 1 | 132 | 3.98e-84 | 242 |
| MS.gene44023.t1 | AT3G04920 | 90.152 | 132 | 13 | 0 | 1 | 132 | 1 | 132 | 8.64e-77 | 224 |
| MS.gene44023.t1 | AT3G04920 | 85.437 | 103 | 14 | 1 | 1 | 102 | 1 | 103 | 7.31e-53 | 162 |
Find 36 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAGTTCAGAACTCATTT+TGG | 0.192309 | 1.3:+57540111 | MS.gene44023:CDS |
| GGTGGCAAGTCCACTGGTTT+TGG | 0.267395 | 1.3:+57540135 | MS.gene44023:CDS |
| ACCCTAACAAGTCTGTATTT+TGG | 0.279167 | 1.3:-57540198 | None:intergenic |
| CCTGTTTGTCATGAATTTCC+TGG | 0.293677 | 1.3:-57538778 | None:intergenic |
| AACCAAAATACAGACTTGTT+AGG | 0.354436 | 1.3:+57540196 | MS.gene44023:CDS |
| AAATGAAGGAAAGAAAGAAC+AGG | 0.391792 | 1.3:+57541249 | MS.gene44023:CDS |
| TTGGACACATTTGCCCTCCC+TGG | 0.411146 | 1.3:-57539441 | None:intergenic |
| CTTGGCAGCATCACCAGCCT+TGG | 0.412083 | 1.3:-57541393 | None:intergenic |
| AAAACTCACAAATTGCTTCC+TGG | 0.412532 | 1.3:-57538808 | None:intergenic |
| GTCATTGATGTTCTTCATCC+AGG | 0.419765 | 1.3:+57539423 | MS.gene44023:CDS |
| GCTGGTGATGCTGCCAAGGC+TGG | 0.425056 | 1.3:+57541398 | MS.gene44023:CDS |
| TTTGGAGGTGGCAAGTCCAC+TGG | 0.458362 | 1.3:+57540129 | MS.gene44023:CDS |
| TTATTTCTTCTTGCCAGCCT+TGG | 0.476966 | 1.3:-57541411 | None:intergenic |
| CCAGGAAATTCATGACAAAC+AGG | 0.483747 | 1.3:+57538778 | MS.gene44023:CDS |
| TGACAAACAGGCTTCTCTCC+AGG | 0.487847 | 1.3:+57538790 | MS.gene44023:CDS |
| GGCTGAGCTAAAGGAGAAGC+TGG | 0.492085 | 1.3:+57540047 | MS.gene44023:intron |
| GTAGAATGGACTTGATACTA+AGG | 0.495750 | 1.3:+57541208 | MS.gene44023:intron |
| CAAGGCTGGTGATGCTGCCA+AGG | 0.500785 | 1.3:+57541394 | MS.gene44023:CDS |
| ACCAAAATACAGACTTGTTA+GGG | 0.511637 | 1.3:+57540197 | MS.gene44023:CDS |
| AATCATAACCATGGCGGACA+AGG | 0.511646 | 1.3:+57538740 | None:intergenic |
| GAAGATCCGTGGAGTTAAGA+AGG | 0.518538 | 1.3:+57541277 | MS.gene44023:CDS |
| AGCTAAAGGAGAAGCTGGCT+AGG | 0.550489 | 1.3:+57540052 | MS.gene44023:CDS |
| ATACTAAGGTTGAAAAGTCA+AGG | 0.557383 | 1.3:+57541222 | MS.gene44023:CDS |
| GGCTAGGATTTATGATGTGA+AGG | 0.559469 | 1.3:+57540068 | MS.gene44023:CDS |
| TGGTGTGAAGGCTGAGCTAA+AGG | 0.565585 | 1.3:+57540038 | MS.gene44023:intron |
| GCTTTACCTTCTTAACTCCA+CGG | 0.569745 | 1.3:-57541283 | None:intergenic |
| TCATTGATGTTCTTCATCCA+GGG | 0.571853 | 1.3:+57539424 | MS.gene44023:CDS |
| AAAGTCAAGGAAGCAAATGA+AGG | 0.574321 | 1.3:+57541235 | MS.gene44023:CDS |
| TGTCACTGCCTTGTCCGCCA+TGG | 0.587558 | 1.3:-57538748 | None:intergenic |
| AGGGAGGGCAAATGTGTCCA+AGG | 0.599653 | 1.3:+57539443 | MS.gene44023:CDS |
| TGATGTTCTTCATCCAGGGA+GGG | 0.609379 | 1.3:+57539428 | MS.gene44023:CDS |
| AACAGGGCAAAGAAGATCCG+TGG | 0.612698 | 1.3:+57541266 | MS.gene44023:CDS |
| AGGCAGTGACAATCAGAACC+AGG | 0.646151 | 1.3:+57538760 | MS.gene44023:CDS |
| ATAGATCAAACCAAAACCAG+TGG | 0.662445 | 1.3:-57540145 | None:intergenic |
| TTGATGTTCTTCATCCAGGG+AGG | 0.668249 | 1.3:+57539427 | MS.gene44023:CDS |
| AATGAAGGAAAGAAAGAACA+GGG | 0.674567 | 1.3:+57541250 | MS.gene44023:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | - | chr1.3:57540269-57540288 | None:intergenic | 0.0% |
| !! | AAATGATTGAAATTAAATGT+AGG | - | chr1.3:57540804-57540823 | None:intergenic | 15.0% |
| !! | AATGATTGAAATTAAATGTA+GGG | - | chr1.3:57540803-57540822 | None:intergenic | 15.0% |
| !! | AATTGCAAATTTAAATCAAT+AGG | - | chr1.3:57541137-57541156 | None:intergenic | 15.0% |
| !! | ATATATAAAACAAGAAACAT+AGG | - | chr1.3:57539760-57539779 | None:intergenic | 15.0% |
| !! | CTTGAAAAAAATAAATGAAT+AGG | - | chr1.3:57540648-57540667 | None:intergenic | 15.0% |
| !! | GTATTATAAACTTATGATAT+TGG | + | chr1.3:57539987-57540006 | MS.gene44023:intron | 15.0% |
| !!! | ATATTATAGTTTTCTTTTCT+TGG | + | chr1.3:57539563-57539582 | MS.gene44023:intron | 15.0% |
| !! | AAAAAACAAACAAATCCATT+TGG | - | chr1.3:57540418-57540437 | None:intergenic | 20.0% |
| !! | AATATATCAGCCAAATATAA+AGG | - | chr1.3:57539718-57539737 | None:intergenic | 20.0% |
| !! | CAATTTCATACAGTATTATT+TGG | + | chr1.3:57539883-57539902 | MS.gene44023:intron | 20.0% |
| !! | CTATTACCAAATCAATAATA+AGG | - | chr1.3:57539797-57539816 | None:intergenic | 20.0% |
| !! | TGTATGTTTATATGTTAGAT+AGG | + | chr1.3:57539468-57539487 | MS.gene44023:intron | 20.0% |
| !! | TTAATTGCATTTCTATATGT+AGG | + | chr1.3:57539631-57539650 | MS.gene44023:intron | 20.0% |
| !! | TTATGAAGAAATAGATAACA+AGG | - | chr1.3:57538839-57538858 | None:intergenic | 20.0% |
| !! | TTTGATCATTCCTTTATATT+TGG | + | chr1.3:57539705-57539724 | MS.gene44023:intron | 20.0% |
| !!! | AATGGATTTGTTTGTTTTTT+CGG | + | chr1.3:57540418-57540437 | MS.gene44023:intron | 20.0% |
| !!! | AGGGTTTTATATTATGTTAT+TGG | + | chr1.3:57539351-57539370 | MS.gene44023:intron | 20.0% |
| !!! | ATTATGCCTTATTATTGATT+TGG | + | chr1.3:57539788-57539807 | MS.gene44023:intron | 20.0% |
| !!! | GTTTTTATTGAAAAAGGTTA+TGG | - | chr1.3:57538978-57538997 | None:intergenic | 20.0% |
| !!! | TAACCTTTTTCAATAAAAAC+CGG | + | chr1.3:57538978-57538997 | MS.gene44023:intron | 20.0% |
| !!! | TCTATCATTTTTTTATAGTG+TGG | + | chr1.3:57539317-57539336 | MS.gene44023:intron | 20.0% |
| !!! | TGGTATTTTTTATAGTAAAC+TGG | - | chr1.3:57539051-57539070 | None:intergenic | 20.0% |
| ! | AAAACCAGTTCAACTAAATT+TGG | - | chr1.3:57539071-57539090 | None:intergenic | 25.0% |
| ! | AAACTCAAACCTATATTGTA+TGG | - | chr1.3:57539821-57539840 | None:intergenic | 25.0% |
| ! | AACATAAATGTTAACAACCA+GGG | - | chr1.3:57540373-57540392 | None:intergenic | 25.0% |
| ! | AATACCAAATTTAGTTGAAC+TGG | + | chr1.3:57539064-57539083 | MS.gene44023:intron | 25.0% |
| ! | ACATATAAACATACATACCT+TGG | - | chr1.3:57539463-57539482 | None:intergenic | 25.0% |
| ! | ACTGTTATTGAAAACATAAC+CGG | - | chr1.3:57539000-57539019 | None:intergenic | 25.0% |
| ! | ATAGTGTGATTCAGATAATT+AGG | + | chr1.3:57539248-57539267 | MS.gene44023:intron | 25.0% |
| ! | TAGTGTGATTCAGATAATTA+GGG | + | chr1.3:57539249-57539268 | MS.gene44023:intron | 25.0% |
| ! | TGAATACAAAAACAGTGTTT+GGG | - | chr1.3:57540095-57540114 | None:intergenic | 25.0% |
| ! | TTGAATACAAAAACAGTGTT+TGG | - | chr1.3:57540096-57540115 | None:intergenic | 25.0% |
| !! | ATCAAAAGATTTGCTTTGAA+CGG | - | chr1.3:57539205-57539224 | None:intergenic | 25.0% |
| !! | CAAGAGAGTACATAATTATA+GGG | - | chr1.3:57540908-57540927 | None:intergenic | 25.0% |
| !! | GATTTACCTTTTATTGTGTT+TGG | + | chr1.3:57540018-57540037 | MS.gene44023:intron | 25.0% |
| !! | TAGTTTAGAGATAATTTTGC+TGG | + | chr1.3:57540872-57540891 | MS.gene44023:intron | 25.0% |
| !! | TATTTCTGTTAAATAGTTCC+TGG | + | chr1.3:57540734-57540753 | MS.gene44023:intron | 25.0% |
| !! | TCAAGAGAGTACATAATTAT+AGG | - | chr1.3:57540909-57540928 | None:intergenic | 25.0% |
| !! | TCTTTTCTTCTATTGTAGAA+TGG | + | chr1.3:57541194-57541213 | MS.gene44023:intron | 25.0% |
| !!! | TAACCGGTTTTTATTGAAAA+AGG | - | chr1.3:57538984-57539003 | None:intergenic | 25.0% |
| !!! | TTGTTTGTTTTTTCGGAATT+TGG | + | chr1.3:57540425-57540444 | MS.gene44023:intron | 25.0% |
| AAATCCATTAGCCAAAAAGA+TGG | - | chr1.3:57539928-57539947 | None:intergenic | 30.0% | |
| AAATGAAGGAAAGAAAGAAC+AGG | + | chr1.3:57541249-57541268 | MS.gene44023:CDS | 30.0% | |
| AATGAAGGAAAGAAAGAACA+GGG | + | chr1.3:57541250-57541269 | MS.gene44023:CDS | 30.0% | |
| ACGAGATCTGATTTCAATTA+GGG | - | chr1.3:57538863-57538882 | None:intergenic | 30.0% | |
| ACTAAATTCACAAGCAAATG+AGG | - | chr1.3:57540614-57540633 | None:intergenic | 30.0% | |
| ATACTAAGGTTGAAAAGTCA+AGG | + | chr1.3:57541222-57541241 | MS.gene44023:CDS | 30.0% | |
| ATAGTGTGGTTCAGATAATT+AGG | + | chr1.3:57539331-57539350 | MS.gene44023:intron | 30.0% | |
| ATGTTAAAGTCGTGATTGTT+AGG | - | chr1.3:57539135-57539154 | None:intergenic | 30.0% | |
| CAACATAAATGTTAACAACC+AGG | - | chr1.3:57540374-57540393 | None:intergenic | 30.0% | |
| CTGGTTGTTAACATTTATGT+TGG | + | chr1.3:57540372-57540391 | MS.gene44023:intron | 30.0% | |
| GATTCATCAACTACATTAAC+AGG | - | chr1.3:57541112-57541131 | None:intergenic | 30.0% | |
| GATTGAAATTAAATGTAGGG+TGG | - | chr1.3:57540800-57540819 | None:intergenic | 30.0% | |
| GGTAATAGACCATACAATAT+AGG | + | chr1.3:57539809-57539828 | MS.gene44023:intron | 30.0% | |
| TACGAGATCTGATTTCAATT+AGG | - | chr1.3:57538864-57538883 | None:intergenic | 30.0% | |
| TAGTGTGGTTCAGATAATTA+GGG | + | chr1.3:57539332-57539351 | MS.gene44023:intron | 30.0% | |
| TTCACACCAAACACAATAAA+AGG | - | chr1.3:57540027-57540046 | None:intergenic | 30.0% | |
| TTTCAATAACAGTTCAGTTC+TGG | + | chr1.3:57539007-57539026 | MS.gene44023:intron | 30.0% | |
| ! | AACCAAAATACAGACTTGTT+AGG | + | chr1.3:57540196-57540215 | MS.gene44023:CDS | 30.0% |
| ! | ACAATTTTATTCTGTGTTGC+AGG | + | chr1.3:57539401-57539420 | MS.gene44023:intron | 30.0% |
| ! | ACCAGATCAATTTTATGGTT+CGG | + | chr1.3:57538945-57538964 | MS.gene44023:intron | 30.0% |
| ! | ATAACTCTTGTCCATCTTTT+TGG | + | chr1.3:57539914-57539933 | MS.gene44023:intron | 30.0% |
| ! | GTTAATTCTGTCTTTTCTCT+TGG | + | chr1.3:57540223-57540242 | MS.gene44023:intron | 30.0% |
| ! | TGTCTTTTCTCTTGGATAAT+TGG | + | chr1.3:57540231-57540250 | MS.gene44023:intron | 30.0% |
| ! | TGTGTTTGTTAACAAGTGAA+GGG | + | chr1.3:57540769-57540788 | MS.gene44023:intron | 30.0% |
| ! | TTTGCTTGTAGTGTTGTTAT+TGG | + | chr1.3:57541008-57541027 | MS.gene44023:intron | 30.0% |
| !! | ACCAAAATACAGACTTGTTA+GGG | + | chr1.3:57540197-57540216 | MS.gene44023:CDS | 30.0% |
| !! | ATAGTAAACTGGTTCTAAAC+CGG | - | chr1.3:57539040-57539059 | None:intergenic | 30.0% |
| !! | CTTTCTGGCTTTCTAATTAA+AGG | + | chr1.3:57539593-57539612 | MS.gene44023:intron | 30.0% |
| !! | TATTTTCTAGTGCACAAACT+TGG | - | chr1.3:57539664-57539683 | None:intergenic | 30.0% |
| !! | TTCAAGTTCAGAACTCATTT+TGG | + | chr1.3:57540111-57540130 | MS.gene44023:CDS | 30.0% |
| !!! | ACTTTTCTGAAATTTGCCAA+GGG | + | chr1.3:57541077-57541096 | MS.gene44023:intron | 30.0% |
| !!! | TTTTATTGTGTTTGGTGTGA+AGG | + | chr1.3:57540026-57540045 | MS.gene44023:intron | 30.0% |
| AAAACTCACAAATTGCTTCC+TGG | - | chr1.3:57538811-57538830 | None:intergenic | 35.0% | |
| AAAATTGATCTGGTCTGGTT+TGG | - | chr1.3:57538939-57538958 | None:intergenic | 35.0% | |
| AAAGTCAAGGAAGCAAATGA+AGG | + | chr1.3:57541235-57541254 | MS.gene44023:CDS | 35.0% | |
| ACCATAAAATTGATCTGGTC+TGG | - | chr1.3:57538944-57538963 | None:intergenic | 35.0% | |
| ACCGAACCATAAAATTGATC+TGG | - | chr1.3:57538949-57538968 | None:intergenic | 35.0% | |
| AGTGTGATTCAGATACATAG+TGG | + | chr1.3:57539292-57539311 | MS.gene44023:intron | 35.0% | |
| AGTTATTTGTATTGCCTGCT+GGG | + | chr1.3:57541035-57541054 | MS.gene44023:intron | 35.0% | |
| ATAGATCAAACCAAAACCAG+TGG | - | chr1.3:57540148-57540167 | None:intergenic | 35.0% | |
| ATAGGAAACTATCTGCTTGA+TGG | - | chr1.3:57539742-57539761 | None:intergenic | 35.0% | |
| CAACTACATTAACAGGCAAA+AGG | - | chr1.3:57541105-57541124 | None:intergenic | 35.0% | |
| GTTATTGGTGTGACTATGAA+CGG | - | chr1.3:57539169-57539188 | None:intergenic | 35.0% | |
| GTTCAACTCCATTGTGATTA+GGG | + | chr1.3:57538895-57538914 | MS.gene44023:intron | 35.0% | |
| TAGTTATTTGTATTGCCTGC+TGG | + | chr1.3:57541034-57541053 | MS.gene44023:intron | 35.0% | |
| TCACGTTTGAATTTGTCCAT+TGG | + | chr1.3:57540945-57540964 | MS.gene44023:intron | 35.0% | |
| TCATTGATGTTCTTCATCCA+GGG | + | chr1.3:57539424-57539443 | MS.gene44023:CDS | 35.0% | |
| TGTTCAACTCCATTGTGATT+AGG | + | chr1.3:57538894-57538913 | MS.gene44023:intron | 35.0% | |
| TTCAACTCCATTGTGATTAG+GGG | + | chr1.3:57538896-57538915 | MS.gene44023:intron | 35.0% | |
| TTTCTCTTGGATAATTGGAC+TGG | + | chr1.3:57540236-57540255 | MS.gene44023:intron | 35.0% | |
| ! | AAATTGATCTGGTCTGGTTT+GGG | - | chr1.3:57538938-57538957 | None:intergenic | 35.0% |
| ! | AAGTTCAGAACTCATTTTGG+AGG | + | chr1.3:57540114-57540133 | MS.gene44023:CDS | 35.0% |
| ! | ACCAGACCAGATCAATTTTA+TGG | + | chr1.3:57538940-57538959 | MS.gene44023:intron | 35.0% |
| ! | ACCCTAACAAGTCTGTATTT+TGG | - | chr1.3:57540201-57540220 | None:intergenic | 35.0% |
| ! | AGATGCTATTGAAACTTGCT+TGG | + | chr1.3:57539528-57539547 | MS.gene44023:intron | 35.0% |
| ! | GAGTTTCTCATTCGTCTTTT+TGG | + | chr1.3:57539835-57539854 | MS.gene44023:intron | 35.0% |
| ! | GTAGAATGGACTTGATACTA+AGG | + | chr1.3:57541208-57541227 | MS.gene44023:intron | 35.0% |
| ! | GTGTGTTTGTTAACAAGTGA+AGG | + | chr1.3:57540768-57540787 | MS.gene44023:intron | 35.0% |
| !! | ACATCAGTGTTTTTGCCAAA+TGG | + | chr1.3:57540400-57540419 | MS.gene44023:intron | 35.0% |
| !! | CATTGTATTTTTGCAGACCA+AGG | + | chr1.3:57541376-57541395 | MS.gene44023:intron | 35.0% |
| !! | TGATTTAGTTTGCTATTCCC+TGG | + | chr1.3:57540353-57540372 | MS.gene44023:intron | 35.0% |
| !!! | CACTTTTCTGAAATTTGCCA+AGG | + | chr1.3:57541076-57541095 | MS.gene44023:intron | 35.0% |
| !!! | TGCACTTCCTTTTGATTTGA+CGG | + | chr1.3:57540694-57540713 | MS.gene44023:intron | 35.0% |
| !!! | TTGTCCATCTTTTTGGCTAA+TGG | + | chr1.3:57539921-57539940 | MS.gene44023:intron | 35.0% |
| AACACACTTATAACAGCACC+AGG | - | chr1.3:57540755-57540774 | None:intergenic | 40.0% | |
| ACAAATTCAAACGTGAGCAC+TGG | - | chr1.3:57540941-57540960 | None:intergenic | 40.0% | |
| ATGAACACCCCTAATCACAA+TGG | - | chr1.3:57538906-57538925 | None:intergenic | 40.0% | |
| CCAGGAAATTCATGACAAAC+AGG | + | chr1.3:57538778-57538797 | MS.gene44023:CDS | 40.0% | |
| CCTGTTTGTCATGAATTTCC+TGG | - | chr1.3:57538781-57538800 | None:intergenic | 40.0% | |
| GCTTTACCTTCTTAACTCCA+CGG | - | chr1.3:57541286-57541305 | None:intergenic | 40.0% | |
| GGCTAGGATTTATGATGTGA+AGG | + | chr1.3:57540068-57540087 | MS.gene44023:CDS | 40.0% | |
| GTCATTGATGTTCTTCATCC+AGG | + | chr1.3:57539423-57539442 | MS.gene44023:CDS | 40.0% | |
| TGGCAAAAACACTGATGTTG+AGG | - | chr1.3:57540398-57540417 | None:intergenic | 40.0% | |
| ! | GGAAGTGCAAAGTCAAACAT+CGG | - | chr1.3:57540683-57540702 | None:intergenic | 40.0% |
| ! | TTATTTCTTCTTGCCAGCCT+TGG | - | chr1.3:57541414-57541433 | None:intergenic | 40.0% |
| !! | TTCAGAACTCATTTTGGAGG+TGG | + | chr1.3:57540117-57540136 | MS.gene44023:CDS | 40.0% |
| !! | TTTCTTGGTAGTGTGCTTTC+TGG | + | chr1.3:57539578-57539597 | MS.gene44023:intron | 40.0% |
| !!! | GCACTTCCTTTTGATTTGAC+GGG | + | chr1.3:57540695-57540714 | MS.gene44023:intron | 40.0% |
| ACTGACAGAACTGACACCAA+TGG | - | chr1.3:57540964-57540983 | None:intergenic | 45.0% | |
| ATTGGTGTGACTATGAACGG+CGG | - | chr1.3:57539166-57539185 | None:intergenic | 45.0% | |
| GAAGATCCGTGGAGTTAAGA+AGG | + | chr1.3:57541277-57541296 | MS.gene44023:CDS | 45.0% | |
| TACGCTCCCGTCAAATCAAA+AGG | - | chr1.3:57540704-57540723 | None:intergenic | 45.0% | |
| TGATGTTCTTCATCCAGGGA+GGG | + | chr1.3:57539428-57539447 | MS.gene44023:CDS | 45.0% | |
| TTGATGTTCTTCATCCAGGG+AGG | + | chr1.3:57539427-57539446 | MS.gene44023:CDS | 45.0% | |
| ! | TGATTTGACGGGAGCGTATT+TGG | + | chr1.3:57540706-57540725 | MS.gene44023:intron | 45.0% |
| !! | GTATTTTTGCAGACCAAGGC+TGG | + | chr1.3:57541380-57541399 | MS.gene44023:intron | 45.0% |
| !! | GTTCAGTTCTGGTTCAGAAC+CGG | + | chr1.3:57539018-57539037 | MS.gene44023:intron | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTTTG+TGG | + | chr1.3:57540272-57540291 | MS.gene44023:intron | 5.0% |
| AACAGGGCAAAGAAGATCCG+TGG | + | chr1.3:57541266-57541285 | MS.gene44023:CDS | 50.0% | |
| AAGTAGAACATGTGCCCAGC+AGG | - | chr1.3:57541052-57541071 | None:intergenic | 50.0% | |
| AGCTAAAGGAGAAGCTGGCT+AGG | + | chr1.3:57540052-57540071 | MS.gene44023:CDS | 50.0% | |
| AGGCAGTGACAATCAGAACC+AGG | + | chr1.3:57538760-57538779 | MS.gene44023:CDS | 50.0% | |
| GGCGACGACAAGAAGGTTAT+TGG | - | chr1.3:57539184-57539203 | None:intergenic | 50.0% | |
| TAACAGGCAAAAGGAGCCCT+TGG | - | chr1.3:57541096-57541115 | None:intergenic | 50.0% | |
| TGACAAACAGGCTTCTCTCC+AGG | + | chr1.3:57538790-57538809 | MS.gene44023:CDS | 50.0% | |
| TGGTGTGAAGGCTGAGCTAA+AGG | + | chr1.3:57540038-57540057 | MS.gene44023:intron | 50.0% | |
| TTTGAACGGCGACGACAAGA+AGG | - | chr1.3:57539191-57539210 | None:intergenic | 50.0% | |
| AGGGAGGGCAAATGTGTCCA+AGG | + | chr1.3:57539443-57539462 | MS.gene44023:CDS | 55.0% | |
| GGCTGAGCTAAAGGAGAAGC+TGG | + | chr1.3:57540047-57540066 | MS.gene44023:intron | 55.0% | |
| TTGGACACATTTGCCCTCCC+TGG | - | chr1.3:57539444-57539463 | None:intergenic | 55.0% | |
| TTTGGAGGTGGCAAGTCCAC+TGG | + | chr1.3:57540129-57540148 | MS.gene44023:CDS | 55.0% | |
| !!! | GGTGGCAAGTCCACTGGTTT+TGG | + | chr1.3:57540135-57540154 | MS.gene44023:CDS | 55.0% |
| CTTGGCAGCATCACCAGCCT+TGG | - | chr1.3:57541396-57541415 | None:intergenic | 60.0% | |
| ! | CAAGGCTGGTGATGCTGCCA+AGG | + | chr1.3:57541394-57541413 | MS.gene44023:CDS | 60.0% |
| ! | GCTGGTGATGCTGCCAAGGC+TGG | + | chr1.3:57541398-57541417 | MS.gene44023:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 57538750 | 57541433 | 57538750 | ID=MS.gene44023 |
| chr1.3 | mRNA | 57538750 | 57541433 | 57538750 | ID=MS.gene44023.t1;Parent=MS.gene44023 |
| chr1.3 | exon | 57538750 | 57538821 | 57538750 | ID=MS.gene44023.t1.exon1;Parent=MS.gene44023.t1 |
| chr1.3 | CDS | 57538750 | 57538821 | 57538750 | ID=cds.MS.gene44023.t1;Parent=MS.gene44023.t1 |
| chr1.3 | exon | 57539423 | 57539464 | 57539423 | ID=MS.gene44023.t1.exon2;Parent=MS.gene44023.t1 |
| chr1.3 | CDS | 57539423 | 57539464 | 57539423 | ID=cds.MS.gene44023.t1;Parent=MS.gene44023.t1 |
| chr1.3 | exon | 57540048 | 57540218 | 57540048 | ID=MS.gene44023.t1.exon3;Parent=MS.gene44023.t1 |
| chr1.3 | CDS | 57540048 | 57540218 | 57540048 | ID=cds.MS.gene44023.t1;Parent=MS.gene44023.t1 |
| chr1.3 | exon | 57541212 | 57541298 | 57541212 | ID=MS.gene44023.t1.exon4;Parent=MS.gene44023.t1 |
| chr1.3 | CDS | 57541212 | 57541298 | 57541212 | ID=cds.MS.gene44023.t1;Parent=MS.gene44023.t1 |
| chr1.3 | exon | 57541392 | 57541433 | 57541392 | ID=MS.gene44023.t1.exon5;Parent=MS.gene44023.t1 |
| chr1.3 | CDS | 57541392 | 57541433 | 57541392 | ID=cds.MS.gene44023.t1;Parent=MS.gene44023.t1 |
| Gene Sequence |
| Protein sequence |
