Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025927.t1 | XP_003626547.1 | 99.4 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 9.50E-96 | 359.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025927.t1 | Q8LGI8 | 93.1 | 174 | 12 | 0 | 1 | 174 | 1 | 174 | 5.0e-93 | 341.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025927.t1 | G7L415 | 99.4 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 6.9e-96 | 359.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene025927.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025927 | MS.gene92650 | PPI |
| MS.gene95934 | MS.gene025927 | PPI |
| MS.gene51687 | MS.gene025927 | PPI |
| MS.gene025927 | MS.gene51967 | PPI |
| MS.gene025927 | MS.gene009509 | PPI |
| MS.gene025927 | MS.gene51964 | PPI |
| MS.gene63427 | MS.gene025927 | PPI |
| MS.gene025927 | MS.gene019081 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025927.t1 | MTR_7g117040 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 2.15e-131 | 365 |
| MS.gene025927.t1 | MTR_7g117040 | 97.126 | 174 | 1 | 1 | 1 | 174 | 1 | 170 | 6.04e-126 | 351 |
| MS.gene025927.t1 | MTR_7g117040 | 94.828 | 174 | 2 | 1 | 1 | 174 | 1 | 167 | 2.38e-122 | 342 |
| MS.gene025927.t1 | MTR_3g034200 | 35.762 | 151 | 96 | 1 | 1 | 150 | 1 | 151 | 3.41e-28 | 103 |
| MS.gene025927.t1 | MTR_3g030055 | 27.679 | 112 | 76 | 2 | 39 | 150 | 42 | 148 | 3.50e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025927.t1 | AT1G03150 | 93.103 | 174 | 12 | 0 | 1 | 174 | 1 | 174 | 1.01e-124 | 348 |
| MS.gene025927.t1 | AT5G13780 | 36.424 | 151 | 95 | 1 | 1 | 150 | 1 | 151 | 1.22e-27 | 102 |
Find 44 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGATTCATTAGTTTCT+TGG | 0.211108 | 7.1:-1076943 | None:intergenic |
| CGAGTGCTACGCTATTATTC+TGG | 0.267608 | 7.1:+1078744 | MS.gene025927:CDS |
| TGATATGGTTACCGGGGCCT+TGG | 0.305955 | 7.1:-1076742 | None:intergenic |
| CACAAATAGATCAACAAAAT+AGG | 0.329063 | 7.1:-1077074 | None:intergenic |
| ACTTACTGTAACCCATGATA+TGG | 0.371450 | 7.1:-1076757 | None:intergenic |
| TAATTGTTGCCTGCGATACT+CGG | 0.380713 | 7.1:-1076919 | None:intergenic |
| GTAACCCATGATATGGTTAC+CGG | 0.405860 | 7.1:-1076750 | None:intergenic |
| TTCTGGGGAAGAAGATGGAT+TGG | 0.420903 | 7.1:+1078761 | MS.gene025927:CDS |
| GATATGGTTACCGGGGCCTT+GGG | 0.427052 | 7.1:-1076741 | None:intergenic |
| GGTTACCGGGGCCTTGGGCG+AGG | 0.434572 | 7.1:-1076736 | None:intergenic |
| TAGTCGTACTCTAACTCATC+AGG | 0.466585 | 7.1:-1078952 | None:intergenic |
| GAGTGCTACGCTATTATTCT+GGG | 0.472245 | 7.1:+1078745 | MS.gene025927:CDS |
| TTGGGCGAGGTGGAAATAGT+CGG | 0.473599 | 7.1:-1076723 | None:intergenic |
| TCTGGGGAAGAAGATGGATT+GGG | 0.475034 | 7.1:+1078762 | MS.gene025927:CDS |
| AGCCATCAAAATGTATGAAA+AGG | 0.478370 | 7.1:+1077114 | MS.gene025927:CDS |
| GTAGTTATGGGTAAAGTTGA+GGG | 0.481119 | 7.1:+1076849 | MS.gene025927:intron |
| AGGCCCCGGTAACCATATCA+TGG | 0.483412 | 7.1:+1076745 | MS.gene025927:CDS |
| TTCCACCTCGCCCAAGGCCC+CGG | 0.488885 | 7.1:+1076731 | MS.gene025927:CDS |
| TATTATTCTGGGGAAGAAGA+TGG | 0.493124 | 7.1:+1078756 | MS.gene025927:CDS |
| GACTATTTCCACCTCGCCCA+AGG | 0.493150 | 7.1:+1076725 | MS.gene025927:CDS |
| GGAGTGACAGGTCGTTTAAG+AGG | 0.494138 | 7.1:-1078931 | None:intergenic |
| TTGAGGGGCAAGGAGAATCT+TGG | 0.494281 | 7.1:+1076865 | MS.gene025927:CDS |
| TGCTAGGTAGGTCATGTAGA+AGG | 0.496038 | 7.1:-1076693 | None:intergenic |
| TGACATTTGTAAAACGAAGA+AGG | 0.498914 | 7.1:-1076565 | None:intergenic |
| TGGGCGAGGTGGAAATAGTC+GGG | 0.499600 | 7.1:-1076722 | None:intergenic |
| TGTAGTTATGGGTAAAGTTG+AGG | 0.505774 | 7.1:+1076848 | MS.gene025927:intron |
| TACCGGGGCCTTGGGCGAGG+TGG | 0.518879 | 7.1:-1076733 | None:intergenic |
| CTGTTGCTCCCGAGTATCGC+AGG | 0.521448 | 7.1:+1076910 | MS.gene025927:CDS |
| TACATACAGTTTCAGTGAGA+TGG | 0.523499 | 7.1:-1076595 | None:intergenic |
| AATAGTCGGGCCATCGTGCT+AGG | 0.528873 | 7.1:-1076709 | None:intergenic |
| ATGGGTAAAGTTGAGGGGCA+AGG | 0.534565 | 7.1:+1076855 | MS.gene025927:CDS |
| AATTGTTGCCTGCGATACTC+GGG | 0.536449 | 7.1:-1076918 | None:intergenic |
| TCTAACTCATCAGGAGTGAC+AGG | 0.539202 | 7.1:-1078943 | None:intergenic |
| TAACCCATGATATGGTTACC+GGG | 0.568371 | 7.1:-1076749 | None:intergenic |
| GAGTGACAGGTCGTTTAAGA+GGG | 0.595531 | 7.1:-1078930 | None:intergenic |
| GGCCCCGGTAACCATATCAT+GGG | 0.604498 | 7.1:+1076746 | MS.gene025927:CDS |
| AGGTCGTTTAAGAGGGATGA+CGG | 0.617126 | 7.1:-1078923 | None:intergenic |
| TAGTTATGGGTAAAGTTGAG+GGG | 0.650869 | 7.1:+1076850 | MS.gene025927:intron |
| GGGCAAGGAGAATCTTGGCA+TGG | 0.658826 | 7.1:+1076870 | MS.gene025927:CDS |
| GTCGGGCCATCGTGCTAGGT+AGG | 0.658913 | 7.1:-1076705 | None:intergenic |
| TGAAGATGACAACAATACGT+AGG | 0.673340 | 7.1:+1076528 | None:intergenic |
| AACCCATGATATGGTTACCG+GGG | 0.702997 | 7.1:-1076748 | None:intergenic |
| AGTGCTACGCTATTATTCTG+GGG | 0.705031 | 7.1:+1078746 | MS.gene025927:CDS |
| ACATGACCTACCTAGCACGA+TGG | 0.757874 | 7.1:+1076699 | MS.gene025927:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAACTTTATAAGTTAAAA+CGG | - | chr7.1:1078384-1078403 | None:intergenic | 15.0% |
| !! | TTAACTTATAAAGTTGTAAT+TGG | + | chr7.1:1078386-1078405 | MS.gene025927:intron | 15.0% |
| !!! | CATTTTTAATCTTTTAGAAT+TGG | + | chr7.1:1077009-1077028 | MS.gene025927:intron | 15.0% |
| !! | AAATCAAACCTATGTTTAAT+AGG | - | chr7.1:1078242-1078261 | None:intergenic | 20.0% |
| !! | AGCTAAAAAGTGAAATAAAT+TGG | - | chr7.1:1077636-1077655 | None:intergenic | 20.0% |
| !! | ATGAAGTAAAAACAAAAACA+TGG | - | chr7.1:1078795-1078814 | None:intergenic | 20.0% |
| !! | CATTAATGTAATGTAGTTAT+GGG | + | chr7.1:1076837-1076856 | MS.gene025927:intron | 20.0% |
| !! | GCTAAAAAGTGAAATAAATT+GGG | - | chr7.1:1077635-1077654 | None:intergenic | 20.0% |
| !! | TCATTAATGTAATGTAGTTA+TGG | + | chr7.1:1076836-1076855 | MS.gene025927:intron | 20.0% |
| !! | TTCTCATATCTGAAAATAAA+GGG | - | chr7.1:1078873-1078892 | None:intergenic | 20.0% |
| !! | TTTCTCATATCTGAAAATAA+AGG | - | chr7.1:1078874-1078893 | None:intergenic | 20.0% |
| !!! | AAAACAAAATTTTCAGATTG+TGG | + | chr7.1:1078483-1078502 | MS.gene025927:intron | 20.0% |
| !!! | TATGTTTTCTTCATTAGATT+AGG | + | chr7.1:1078642-1078661 | MS.gene025927:intron | 20.0% |
| !!! | TTTATTTTCAGATATGAGAA+AGG | + | chr7.1:1078873-1078892 | MS.gene025927:intron | 20.0% |
| !!! | TTTCATATTCAGATTTTGTT+AGG | - | chr7.1:1078142-1078161 | None:intergenic | 20.0% |
| !!! | TTTTAATCTTTTAGAATTGG+AGG | + | chr7.1:1077012-1077031 | MS.gene025927:intron | 20.0% |
| ! | AAAGAATTAGTTAGCAATTC+AGG | - | chr7.1:1078685-1078704 | None:intergenic | 25.0% |
| ! | AAATGAAAGAAAGATATGCA+AGG | - | chr7.1:1076994-1077013 | None:intergenic | 25.0% |
| ! | ACATGTTGAAAAATCATAAG+TGG | + | chr7.1:1077446-1077465 | MS.gene025927:intron | 25.0% |
| ! | ACTTTACAAATAGCATCAAA+TGG | + | chr7.1:1078188-1078207 | MS.gene025927:intron | 25.0% |
| ! | AGAAACATAATATGGAAAAG+AGG | - | chr7.1:1077889-1077908 | None:intergenic | 25.0% |
| ! | ATATAATCGAGAGAGAAAAA+AGG | - | chr7.1:1076797-1076816 | None:intergenic | 25.0% |
| ! | CACAAATAGATCAACAAAAT+AGG | - | chr7.1:1077077-1077096 | None:intergenic | 25.0% |
| ! | CAGTACATAGAAACATAATA+TGG | - | chr7.1:1077897-1077916 | None:intergenic | 25.0% |
| ! | GAAACATAATATGGAAAAGA+GGG | - | chr7.1:1077888-1077907 | None:intergenic | 25.0% |
| ! | GTCTTGATATAAGTTAGAAT+TGG | + | chr7.1:1077034-1077053 | MS.gene025927:intron | 25.0% |
| ! | GTTGTATAATGTACACAAAA+TGG | - | chr7.1:1077671-1077690 | None:intergenic | 25.0% |
| ! | TATAATCGAGAGAGAAAAAA+GGG | - | chr7.1:1076796-1076815 | None:intergenic | 25.0% |
| ! | TATTATTATCCAACTGATGT+GGG | - | chr7.1:1078533-1078552 | None:intergenic | 25.0% |
| ! | TGTAAATTGAATGTTGGATT+AGG | + | chr7.1:1078618-1078637 | MS.gene025927:intron | 25.0% |
| ! | TGTCATTGTAAATTGAATGT+TGG | + | chr7.1:1078612-1078631 | MS.gene025927:intron | 25.0% |
| ! | TTGAAAATAGAGTTCTTTCA+TGG | - | chr7.1:1077415-1077434 | None:intergenic | 25.0% |
| !! | AAATATTGTCTCAATGGATT+GGG | + | chr7.1:1078335-1078354 | MS.gene025927:intron | 25.0% |
| !! | ATTTTCAGATTGTGGTTTTT+TGG | + | chr7.1:1078491-1078510 | MS.gene025927:intron | 25.0% |
| !! | TAATGAGAAGTTAGATTTTG+TGG | - | chr7.1:1077486-1077505 | None:intergenic | 25.0% |
| !! | TACCTTTTCATACATTTTGA+TGG | - | chr7.1:1077119-1077138 | None:intergenic | 25.0% |
| !! | TATAAAGTTGTAATTGGTTC+AGG | + | chr7.1:1078392-1078411 | MS.gene025927:intron | 25.0% |
| !!! | ATTGTAAAAGCACTAATAAG+AGG | - | chr7.1:1077835-1077854 | None:intergenic | 25.0% |
| !!! | TTGTAAAAGCACTAATAAGA+GGG | - | chr7.1:1077834-1077853 | None:intergenic | 25.0% |
| AAAATAGAGTTCTTTCATGG+TGG | - | chr7.1:1077412-1077431 | None:intergenic | 30.0% | |
| ACAAACAACATTAAGAACGA+AGG | - | chr7.1:1076658-1076677 | None:intergenic | 30.0% | |
| ACATACAGAATCATCAAGTA+GGG | + | chr7.1:1077190-1077209 | MS.gene025927:intron | 30.0% | |
| AGCCATCAAAATGTATGAAA+AGG | + | chr7.1:1077114-1077133 | MS.gene025927:CDS | 30.0% | |
| ATAATCGAGAGAGAAAAAAG+GGG | - | chr7.1:1076795-1076814 | None:intergenic | 30.0% | |
| CACTTAATGACTTTCTCAAT+GGG | - | chr7.1:1077728-1077747 | None:intergenic | 30.0% | |
| GAAATATTGTCTCAATGGAT+TGG | + | chr7.1:1078334-1078353 | MS.gene025927:intron | 30.0% | |
| GAGATGAAATATTGTCTCAA+TGG | + | chr7.1:1078329-1078348 | MS.gene025927:intron | 30.0% | |
| GTATTATTATCCAACTGATG+TGG | - | chr7.1:1078534-1078553 | None:intergenic | 30.0% | |
| TAAGAATTAGCATGAAGATG+AGG | - | chr7.1:1077221-1077240 | None:intergenic | 30.0% | |
| TACCAGTTAGAGAAGAAAAA+AGG | + | chr7.1:1077256-1077275 | MS.gene025927:intron | 30.0% | |
| TAGGTTCAAAGCATAAAACA+CGG | - | chr7.1:1078223-1078242 | None:intergenic | 30.0% | |
| TGACATTTGTAAAACGAAGA+AGG | - | chr7.1:1076568-1076587 | None:intergenic | 30.0% | |
| TGTTATCTAAAAAACACCGT+AGG | - | chr7.1:1077774-1077793 | None:intergenic | 30.0% | |
| ! | AAGTCTGTGTCACTATTTAT+TGG | + | chr7.1:1078835-1078854 | MS.gene025927:intron | 30.0% |
| ! | GAGAAGATTCATTAGTTTCT+TGG | - | chr7.1:1076946-1076965 | None:intergenic | 30.0% |
| ! | GCTTTGAACCTATTAAACAT+AGG | + | chr7.1:1078231-1078250 | MS.gene025927:intron | 30.0% |
| ! | TACCCAAGTTTTTAAACAGA+CGG | - | chr7.1:1077602-1077621 | None:intergenic | 30.0% |
| ! | TCTTATTTGACATCTTAGCT+TGG | + | chr7.1:1078705-1078724 | MS.gene025927:intron | 30.0% |
| ! | TGAGATATGAATGAAAGCAT+TGG | - | chr7.1:1077933-1077952 | None:intergenic | 30.0% |
| ! | TGCTATTTAAGCTTACTTTC+TGG | + | chr7.1:1077997-1078016 | MS.gene025927:intron | 30.0% |
| !! | AATACCATTGAGTTGAGAAA+CGG | - | chr7.1:1076625-1076644 | None:intergenic | 30.0% |
| !! | AGATATGAATGAAAGCATTG+GGG | - | chr7.1:1077931-1077950 | None:intergenic | 30.0% |
| !! | GAGATATGAATGAAAGCATT+GGG | - | chr7.1:1077932-1077951 | None:intergenic | 30.0% |
| !! | GATTTTTCAACATGTTAGCT+TGG | - | chr7.1:1077441-1077460 | None:intergenic | 30.0% |
| !! | TTTTCATACATTTTGATGGC+TGG | - | chr7.1:1077115-1077134 | None:intergenic | 30.0% |
| !!! | ACTTTTTAGCTTATTTCTGC+TGG | + | chr7.1:1077645-1077664 | MS.gene025927:intron | 30.0% |
| !!! | TACCTTTTTTCTTCTCTAAC+TGG | - | chr7.1:1077261-1077280 | None:intergenic | 30.0% |
| ACTTACTGTAACCCATGATA+TGG | - | chr7.1:1076760-1076779 | None:intergenic | 35.0% | |
| AGCACTAATAAGAGGGTAAA+AGG | - | chr7.1:1077827-1077846 | None:intergenic | 35.0% | |
| ATACAGAATCATCAAGTAGG+GGG | + | chr7.1:1077192-1077211 | MS.gene025927:intron | 35.0% | |
| ATGACTTTCTCAATGGGATA+AGG | - | chr7.1:1077722-1077741 | None:intergenic | 35.0% | |
| ATGCCGTCTGTTTAAAAACT+TGG | + | chr7.1:1077596-1077615 | MS.gene025927:intron | 35.0% | |
| CATACAGAATCATCAAGTAG+GGG | + | chr7.1:1077191-1077210 | MS.gene025927:intron | 35.0% | |
| CATTTCAGATTCTGTCAGAA+AGG | + | chr7.1:1077155-1077174 | MS.gene025927:intron | 35.0% | |
| GACATACAGAATCATCAAGT+AGG | + | chr7.1:1077189-1077208 | MS.gene025927:intron | 35.0% | |
| GCACTTAATGACTTTCTCAA+TGG | - | chr7.1:1077729-1077748 | None:intergenic | 35.0% | |
| GTAGTTATGGGTAAAGTTGA+GGG | + | chr7.1:1076849-1076868 | MS.gene025927:intron | 35.0% | |
| GTCTGTTTAAAAACTTGGGT+AGG | + | chr7.1:1077601-1077620 | MS.gene025927:intron | 35.0% | |
| TAATCGAGAGAGAAAAAAGG+GGG | - | chr7.1:1076794-1076813 | None:intergenic | 35.0% | |
| TACATACAGTTTCAGTGAGA+TGG | - | chr7.1:1076598-1076617 | None:intergenic | 35.0% | |
| TAGTTATGGGTAAAGTTGAG+GGG | + | chr7.1:1076850-1076869 | MS.gene025927:intron | 35.0% | |
| TGAGAGGAATCTCAATCAAA+CGG | + | chr7.1:1077333-1077352 | MS.gene025927:intron | 35.0% | |
| TGCCGTCTGTTTAAAAACTT+GGG | + | chr7.1:1077597-1077616 | MS.gene025927:intron | 35.0% | |
| TGTAGTTATGGGTAAAGTTG+AGG | + | chr7.1:1076848-1076867 | MS.gene025927:intron | 35.0% | |
| ! | TATTATTCTGGGGAAGAAGA+TGG | + | chr7.1:1078756-1078775 | MS.gene025927:CDS | 35.0% |
| ! | TGGTCTGATTTTGCAAACAA+CGG | + | chr7.1:1078458-1078477 | MS.gene025927:intron | 35.0% |
| ! | TGTAATTGGTTCAGGTGATT+TGG | + | chr7.1:1078400-1078419 | MS.gene025927:intron | 35.0% |
| !! | CTTCACTTTTCACAAGAAGT+CGG | + | chr7.1:1078279-1078298 | MS.gene025927:intron | 35.0% |
| ACTACCGTTTCTCAACTCAA+TGG | + | chr7.1:1076618-1076637 | MS.gene025927:intron | 40.0% | |
| AGTGCTACGCTATTATTCTG+GGG | + | chr7.1:1078746-1078765 | MS.gene025927:CDS | 40.0% | |
| ATAGAGTTCTTTCATGGTGG+AGG | - | chr7.1:1077409-1077428 | None:intergenic | 40.0% | |
| CGACTTCTTGTGAAAAGTGA+AGG | - | chr7.1:1078281-1078300 | None:intergenic | 40.0% | |
| CTAAAAAACACCGTAGGACA+AGG | - | chr7.1:1077768-1077787 | None:intergenic | 40.0% | |
| CTTAGTCAGATAAGGCTTGA+TGG | + | chr7.1:1078088-1078107 | MS.gene025927:intron | 40.0% | |
| GAGAGGAATCTCAATCAAAC+GGG | + | chr7.1:1077334-1077353 | MS.gene025927:intron | 40.0% | |
| GAGTGCTACGCTATTATTCT+GGG | + | chr7.1:1078745-1078764 | MS.gene025927:CDS | 40.0% | |
| GGTTGTAGTGTTCTACTTCA+TGG | + | chr7.1:1077355-1077374 | MS.gene025927:intron | 40.0% | |
| GTAACCCATGATATGGTTAC+CGG | - | chr7.1:1076753-1076772 | None:intergenic | 40.0% | |
| GTTATCTCGATTGCATTGAG+AGG | + | chr7.1:1077317-1077336 | MS.gene025927:intron | 40.0% | |
| TAACCCATGATATGGTTACC+GGG | - | chr7.1:1076752-1076771 | None:intergenic | 40.0% | |
| TAATTGTTGCCTGCGATACT+CGG | - | chr7.1:1076922-1076941 | None:intergenic | 40.0% | |
| TAGTCGTACTCTAACTCATC+AGG | - | chr7.1:1078955-1078974 | None:intergenic | 40.0% | |
| TTACTTTGTCCCACATCAGT+TGG | + | chr7.1:1078521-1078540 | MS.gene025927:intron | 40.0% | |
| TTTCTCAATGGGATAAGGCT+TGG | - | chr7.1:1077717-1077736 | None:intergenic | 40.0% | |
| ! | AAGCCTTATCTGACTAAGTG+GGG | - | chr7.1:1078086-1078105 | None:intergenic | 40.0% |
| ! | ACAAACAAAGCCTTGTCCTA+CGG | + | chr7.1:1077755-1077774 | MS.gene025927:intron | 40.0% |
| ! | CAAGCCTTATCTGACTAAGT+GGG | - | chr7.1:1078087-1078106 | None:intergenic | 40.0% |
| ! | TAGAGTTCTTTCATGGTGGA+GGG | - | chr7.1:1077408-1077427 | None:intergenic | 40.0% |
| ! | TCAAGCCTTATCTGACTAAG+TGG | - | chr7.1:1078088-1078107 | None:intergenic | 40.0% |
| !! | AAAGCATTGGGGACATAGTT+AGG | - | chr7.1:1077920-1077939 | None:intergenic | 40.0% |
| AACCCATGATATGGTTACCG+GGG | - | chr7.1:1076751-1076770 | None:intergenic | 45.0% | |
| AATTGTTGCCTGCGATACTC+GGG | - | chr7.1:1076921-1076940 | None:intergenic | 45.0% | |
| AGGTCGTTTAAGAGGGATGA+CGG | - | chr7.1:1078926-1078945 | None:intergenic | 45.0% | |
| CGAGTGCTACGCTATTATTC+TGG | + | chr7.1:1078744-1078763 | MS.gene025927:CDS | 45.0% | |
| GAGTGACAGGTCGTTTAAGA+GGG | - | chr7.1:1078933-1078952 | None:intergenic | 45.0% | |
| TCTAACTCATCAGGAGTGAC+AGG | - | chr7.1:1078946-1078965 | None:intergenic | 45.0% | |
| TGCTAGGTAGGTCATGTAGA+AGG | - | chr7.1:1076696-1076715 | None:intergenic | 45.0% | |
| ! | CGTAATCTGGAATTGCAAGC+TGG | + | chr7.1:1078433-1078452 | MS.gene025927:intron | 45.0% |
| ! | TCTGGAATTGCAAGCTGGTT+TGG | + | chr7.1:1078438-1078457 | MS.gene025927:intron | 45.0% |
| ! | TCTGGGGAAGAAGATGGATT+GGG | + | chr7.1:1078762-1078781 | MS.gene025927:CDS | 45.0% |
| ! | TGGCTAGTTCATGCGTAATC+TGG | + | chr7.1:1078420-1078439 | MS.gene025927:intron | 45.0% |
| ! | TTCTGGGGAAGAAGATGGAT+TGG | + | chr7.1:1078761-1078780 | MS.gene025927:CDS | 45.0% |
| !! | GGAAGAAGATGGATTGGGTA+TGG | + | chr7.1:1078767-1078786 | MS.gene025927:intron | 45.0% |
| !! | GTAGGACAAGGCTTTGTTTG+TGG | - | chr7.1:1077756-1077775 | None:intergenic | 45.0% |
| !! | ATAATAATACAATTAAATTA+AGG | + | chr7.1:1078544-1078563 | MS.gene025927:intron | 5.0% |
| !! | TAATAATACAATTAAATTAA+GGG | + | chr7.1:1078545-1078564 | MS.gene025927:intron | 5.0% |
| ACATGACCTACCTAGCACGA+TGG | + | chr7.1:1076699-1076718 | MS.gene025927:CDS | 50.0% | |
| AGAGGGCAGAGTCTCAACTT+AGG | - | chr7.1:1077871-1077890 | None:intergenic | 50.0% | |
| ATGGGTAAAGTTGAGGGGCA+AGG | + | chr7.1:1076855-1076874 | MS.gene025927:CDS | 50.0% | |
| CGACCCCACTTAGTCAGATA+AGG | + | chr7.1:1078080-1078099 | MS.gene025927:intron | 50.0% | |
| GAGGGTAACATCACAGGGAA+CGG | - | chr7.1:1077390-1077409 | None:intergenic | 50.0% | |
| GCAGCTACCATACTCCAAGA+TGG | - | chr7.1:1077542-1077561 | None:intergenic | 50.0% | |
| GCTACCATACTCCAAGATGG+TGG | - | chr7.1:1077539-1077558 | None:intergenic | 50.0% | |
| GGAGTGACAGGTCGTTTAAG+AGG | - | chr7.1:1078934-1078953 | None:intergenic | 50.0% | |
| TGGTGGAGGGTAACATCACA+GGG | - | chr7.1:1077395-1077414 | None:intergenic | 50.0% | |
| TTGAGGGGCAAGGAGAATCT+TGG | + | chr7.1:1076865-1076884 | MS.gene025927:CDS | 50.0% | |
| TTGGGCGAGGTGGAAATAGT+CGG | - | chr7.1:1076726-1076745 | None:intergenic | 50.0% | |
| ! | ACCATACTCCAAGATGGTGG+TGG | - | chr7.1:1077536-1077555 | None:intergenic | 50.0% |
| ! | ATGGTGGAGGGTAACATCAC+AGG | - | chr7.1:1077396-1077415 | None:intergenic | 50.0% |
| AATAGTCGGGCCATCGTGCT+AGG | - | chr7.1:1076712-1076731 | None:intergenic | 55.0% | |
| AGGCCCCGGTAACCATATCA+TGG | + | chr7.1:1076745-1076764 | MS.gene025927:CDS | 55.0% | |
| GACTATTTCCACCTCGCCCA+AGG | + | chr7.1:1076725-1076744 | MS.gene025927:CDS | 55.0% | |
| GAGAACTGCCACCACCATCT+TGG | + | chr7.1:1077525-1077544 | MS.gene025927:intron | 55.0% | |
| GATATGGTTACCGGGGCCTT+GGG | - | chr7.1:1076744-1076763 | None:intergenic | 55.0% | |
| GCCACCACCATCTTGGAGTA+TGG | + | chr7.1:1077532-1077551 | MS.gene025927:intron | 55.0% | |
| GGCCCCGGTAACCATATCAT+GGG | + | chr7.1:1076746-1076765 | MS.gene025927:CDS | 55.0% | |
| GGGCAAGGAGAATCTTGGCA+TGG | + | chr7.1:1076870-1076889 | MS.gene025927:CDS | 55.0% | |
| TGATATGGTTACCGGGGCCT+TGG | - | chr7.1:1076745-1076764 | None:intergenic | 55.0% | |
| TGGGCGAGGTGGAAATAGTC+GGG | - | chr7.1:1076725-1076744 | None:intergenic | 55.0% | |
| ! | CTGTTGCTCCCGAGTATCGC+AGG | + | chr7.1:1076910-1076929 | MS.gene025927:CDS | 60.0% |
| GTCGGGCCATCGTGCTAGGT+AGG | - | chr7.1:1076708-1076727 | None:intergenic | 65.0% | |
| TTCCACCTCGCCCAAGGCCC+CGG | + | chr7.1:1076731-1076750 | MS.gene025927:CDS | 70.0% | |
| GGTTACCGGGGCCTTGGGCG+AGG | - | chr7.1:1076739-1076758 | None:intergenic | 75.0% | |
| TACCGGGGCCTTGGGCGAGG+TGG | - | chr7.1:1076736-1076755 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 1076533 | 1078975 | 1076533 | ID=MS.gene025927 |
| chr7.1 | mRNA | 1076533 | 1078975 | 1076533 | ID=MS.gene025927.t1;Parent=MS.gene025927 |
| chr7.1 | exon | 1076533 | 1076610 | 1076533 | ID=MS.gene025927.t1.exon1;Parent=MS.gene025927.t1 |
| chr7.1 | CDS | 1076533 | 1076610 | 1076533 | ID=cds.MS.gene025927.t1;Parent=MS.gene025927.t1 |
| chr7.1 | exon | 1076683 | 1076773 | 1076683 | ID=MS.gene025927.t1.exon2;Parent=MS.gene025927.t1 |
| chr7.1 | CDS | 1076683 | 1076773 | 1076683 | ID=cds.MS.gene025927.t1;Parent=MS.gene025927.t1 |
| chr7.1 | exon | 1076853 | 1076985 | 1076853 | ID=MS.gene025927.t1.exon3;Parent=MS.gene025927.t1 |
| chr7.1 | CDS | 1076853 | 1076985 | 1076853 | ID=cds.MS.gene025927.t1;Parent=MS.gene025927.t1 |
| chr7.1 | exon | 1077066 | 1077135 | 1077066 | ID=MS.gene025927.t1.exon4;Parent=MS.gene025927.t1 |
| chr7.1 | CDS | 1077066 | 1077135 | 1077066 | ID=cds.MS.gene025927.t1;Parent=MS.gene025927.t1 |
| chr7.1 | exon | 1078723 | 1078783 | 1078723 | ID=MS.gene025927.t1.exon5;Parent=MS.gene025927.t1 |
| chr7.1 | CDS | 1078723 | 1078783 | 1078723 | ID=cds.MS.gene025927.t1;Parent=MS.gene025927.t1 |
| chr7.1 | exon | 1078884 | 1078975 | 1078884 | ID=MS.gene025927.t1.exon6;Parent=MS.gene025927.t1 |
| chr7.1 | CDS | 1078884 | 1078975 | 1078884 | ID=cds.MS.gene025927.t1;Parent=MS.gene025927.t1 |
| Gene Sequence |
| Protein sequence |
