AlfalfaGEDB | MS.gene026212

M. sativa cultivar XinJiangDaYe / MS.gene026212

KEGG: K15402
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026212.t1	XP_013466879.1	83	489	80	2	1	487	72	559	4.20E-234	820.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026212.t1	Q9FMY1	68.2	481	147	3	1	480	70	545	3.6e-189	662.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026212.t1	A0A072VS41	83.0	489	80	2	1	487	72	559	3.1e-234	820.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene005079	MS.gene026212	PPI
MS.gene008145	MS.gene026212	PPI
MS.gene022558	MS.gene026212	PPI
MS.gene026212	MS.gene052822	PPI
MS.gene026212	MS.gene63294	PPI
MS.gene026212	MS.gene48305	PPI
MS.gene026212	MS.gene91810	PPI
MS.gene026212	MS.gene059957	PPI
MS.gene026212	MS.gene39425	PPI
MS.gene026212	MS.gene62175	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026212.t1	MTR_1g037550	85.093	483	69	2	1	481	72	553	0.0	853
MS.gene026212.t1	MTR_1g037560	83.368	481	77	1	1	481	72	549	0.0	842
MS.gene026212.t1	MTR_4g075110	75.468	481	114	2	1	481	79	555	0.0	758
MS.gene026212.t1	MTR_7g406990	78.857	350	66	3	1	350	55	396	0.0	561
MS.gene026212.t1	MTR_7g406990	50.538	93	30	2	389	481	364	440	6.16e-16	80.5
MS.gene026212.t1	MTR_8g030590	47.609	481	236	8	2	475	39	510	1.53e-149	438
MS.gene026212.t1	MTR_8g098435	46.875	480	236	8	2	475	39	505	3.33e-146	429
MS.gene026212.t1	MTR_5g070010	48.292	439	210	4	40	475	84	508	7.08e-141	415
MS.gene026212.t1	MTR_3g463060	44.742	485	230	9	2	475	45	502	1.91e-137	406
MS.gene026212.t1	MTR_7g033580	42.348	477	255	6	1	476	38	495	1.52e-134	398

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026212.t1	AT5G23190	68.399	481	146	3	1	480	70	545	0.0	688
MS.gene026212.t1	AT5G08250	67.975	484	142	5	1	480	71	545	0.0	686
MS.gene026212.t1	AT5G08250	67.975	484	142	5	1	480	9	483	0.0	685
MS.gene026212.t1	AT1G24540	48.447	483	228	6	1	475	51	520	8.04e-166	479
MS.gene026212.t1	AT1G13140	46.526	475	235	6	10	476	62	525	2.54e-158	460
MS.gene026212.t1	AT3G26125	46.526	475	239	5	12	476	64	533	2.52e-157	458
MS.gene026212.t1	AT1G13150	45.842	469	243	6	12	476	57	518	3.67e-151	442
MS.gene026212.t1	AT1G13140	45.610	467	225	6	10	476	62	499	9.76e-151	440
MS.gene026212.t1	AT1G63710	47.292	480	236	8	2	475	39	507	9.78e-149	435
MS.gene026212.t1	AT5G58860	45.603	489	235	7	2	478	42	511	3.68e-148	433

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Find 76 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATTAGAAGAGATTTGT+AGG	0.372175	1.2:-23318021	MS.gene026212:CDS
AAATGAAGTTGTAAACAACC+AGG	0.662400	1.2:+23318445	None:intergenic
AAATGCAGTGAATTTGTAGG+CGG	0.621756	1.2:+23316856	None:intergenic
AAATTCACTGCATTTAATGG+AGG	0.612469	1.2:-23316848	MS.gene026212:CDS
AAATTGAAATTAATGAACCA+TGG	0.650410	1.2:+23318811	None:intergenic
AAGAAAGCTTAGGAACAACA+TGG	0.689931	1.2:+23316726	None:intergenic
AAGAAGAGAGGAAGTATCTT+TGG	0.395819	1.2:-23318248	MS.gene026212:CDS
AAGTTCACTATTTACCCTAA+AGG	0.504648	1.2:-23318742	MS.gene026212:CDS
AATATTAGAAGAGATTTGTA+GGG	0.483355	1.2:-23318020	MS.gene026212:CDS
AATGTTTGTATGATAGCTTT+TGG	0.477452	1.2:-23318475	MS.gene026212:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAAGTTGTAAACAACC+AGG	+	chr1.2:23317102-23317121	None:intergenic	30.0%
AAATTCACTGCATTTAATGG+AGG	-	chr1.2:23318696-23318715	MS.gene026212:CDS	30.0%
AAGTTCACTATTTACCCTAA+AGG	-	chr1.2:23316802-23316821	MS.gene026212:CDS	30.0%
AGATGATGATAAGCGAAAAT+CGG	-	chr1.2:23317332-23317351	MS.gene026212:intron	30.0%
ATGAGGCTTAAAGATAAGAA+TGG	-	chr1.2:23317372-23317391	MS.gene026212:intron	30.0%
ATTACCTCTTTATGATCCAA+AGG	+	chr1.2:23317681-23317700	None:intergenic	30.0%
ATTATATCCTTCTGTTCCTT+TGG	-	chr1.2:23317662-23317681	MS.gene026212:intron	30.0%
CATATTTCGTTACCATGTTA+AGG	-	chr1.2:23318782-23318801	MS.gene026212:CDS	30.0%
GAAAGATGGTTAACTAAAGA+TGG	-	chr1.2:23318648-23318667	MS.gene026212:CDS	30.0%
TAAAGAGTCAAAGAAAGCTT+AGG	+	chr1.2:23318831-23318850	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	23316637	23318929	23316637	ID=MS.gene026212
chr1.2	mRNA	23316637	23318929	23316637	ID=MS.gene026212.t1;Parent=MS.gene026212
chr1.2	exon	23317871	23318929	23317871	ID=MS.gene026212.t1.exon1;Parent=MS.gene026212.t1
chr1.2	CDS	23317871	23318929	23317871	ID=cds.MS.gene026212.t1;Parent=MS.gene026212.t1
chr1.2	exon	23316637	23317044	23316637	ID=MS.gene026212.t1.exon2;Parent=MS.gene026212.t1
chr1.2	CDS	23316637	23317044	23316637	ID=cds.MS.gene026212.t1;Parent=MS.gene026212.t1

Gene Sequence

>MS.gene026212

ATGCTACCTTCCTTAATCATAGGACTCAAAACCAACTTCTATGAATGGATGACCAATATGCTTAAAAATCAAAATGGAACCTTTATTTTCAAAGGACCATGGTTCATTAATTTCAATTTCGTCATAACCTCAAAACCTCAAAATATAGAACATCTTCTCAAAACAAAGTTCACTATTTACCCTAAAGGAAACTTCTTCAAAGACACACTTTTTGATTTACTTGGAGATGGTATTTTCAATGCTGATAATGAAACATGGCTGAAACAAAGGAAAATCGCGAGTATCGAGTTTCATTCAACAAAGTTTAGGAAATTAACAATTGATTCATTGTTTGAGCTTGTGAATAATAGGCTCATACCTGTGTTAGAATCTTCTGTAAGGAAATCTGTTTCTATAGATCTTCAAGATATTTTGTTGAGACTCACTTTTGATAATGTTTGTATGATAGCTTTTGGTGTTGATCCTGGTTGTTTACAACTTCATTTACCTGAAATCCCTTTTGCTACAGCATTTGAGGATGCAACAGAAACTAGTGTAATCCGATTCCTTGCGTCGGGTTATGTATGGAAGGCTATGAGGTTTCTGAACTTAGGTATGGAGAGAAAGTTGAAGAAATCAATACAAAAAGTTGATGAATTTGCTGAGAATATTATTAGGGCAAGAAGAGAGGAAGTATCTTTGGAAAATGAAGAAGAAGATGATGATAAGCGAAAATCGGATTTGTTAACTGTGTTTATGAGGCTTAAAGATAAGAATGGAAAGTCTTATTCAGACAAGTTTTTGAGGGATATATGTGTAAATTTCATATTAGCTGGGAGAGACACTTCTTCAGTTGCTTTAAGTTGGTTTTTCTGGTTGGTTGATCAGAATCATGAAGTTGAGGAGAAAATATTAGAAGAGATTTGTAGGGTTGTGAGTGAGAGGGAGGATATCAAGAAGAAAGTGTTGAATGATTCTCTGAGATTCAAGGCTGAGGAGATTAAGAAGATGGATTATTTGCATGCAGCTCTTTCAGAAGCTCTTAGATTATATCCTTCTGTTCCTTTGGATCATAAAGAGGTAATAACAGTTCAATTTTAGCTATTTGTTTGTCTTTTCATCATTGGCATTCCTCATGTTTTTCATATTGATCTTCATTTTCTAAGTGATTAGGCGTAAGTGATTAATGAGAAGTAAACGATCATTTTGATCCTTAAATGTGAGACGTTAGGTTCATTCGGTGTAGTATAGTTTATTTAAACAGTTTATAGTGATTGTACTCAAATTACTTTTGAAATAATATTCAGAACTATTCTACAATATGTCTAAATGTGACTTTCATCGGTTAGTAATTTTTCTTCGGATGTGTCTTTCGTTGATTAATTTGGTTCTCAATTTGTTTCATAAAATTACTACTAAAAGACACATTTGATGAGTATTGTCTTTGAATATTTTTGTAATAATTTCAATTCATTTTGGGGCTATAGTGATAACACCTCACACATTTACCAAAATCATTGTTTACTCTATTTATTGTCAGTTGGTTTTGGTAGAATTCCAGTTTAAACCATGATTGAAGAAATTTTTGTCATGCTTTAAGAAAACTATTGTGTATGCTCATTTCAAAATAAAATAATCTCTTTGGAAAAAAAATTCTTATAATATAATAGGAGGTTAATTAAAAACTATTTACTATAACATATAGAGACGTTGAAATATCAATAATATTGTTGAAAAATTGCACCCAAAAATAAAAATATTGTTGAAAAATAATAATTAATATTTTGTAATAATTTTGCAATATGCTATACTTGACACCTAATATAATCAAATAAAGAGAGTAATTGAATTCAACTTTCAATTATTGATGATTGAAGCTCATATTCATTAAAAATTTCCTTATAAGGTGTTGGAAGACGACACATTCCCAGATGGAACAAAACTAAAAAAAGGAACAAAAGTGATATATGCAATATATTCAATGGGAAGAATGAAAAGCATATGGGGAAAAGATTGCTTGGAGTTCAAGCCAGAAAGATGGTTAACTAAAGATGGTCATTTCATGAGCGAATCCGCCTACAAATTCACTGCATTTAATGGAGGACCAAGGTTGTGTTTAGGCAAAGATTTTGCATACTATCAAATGAAATATGTTGCAGCTAGCATCATATTTCGTTACCATGTTAAGGTTGTTGAGAATCACCATGTTGTTCCTAAGCTTTCTTTGACTCTTTACATGAAACATGGATTGAAAGTTACCCTTCATAGACGTAGTGATGTAGAAATTCATAATTTGAAGTTTGTTTCAAAATGA

Protein sequence

>MS.gene026212.t1

MLPSLIIGLKTNFYEWMTNMLKNQNGTFIFKGPWFINFNFVITSKPQNIEHLLKTKFTIYPKGNFFKDTLFDLLGDGIFNADNETWLKQRKIASIEFHSTKFRKLTIDSLFELVNNRLIPVLESSVRKSVSIDLQDILLRLTFDNVCMIAFGVDPGCLQLHLPEIPFATAFEDATETSVIRFLASGYVWKAMRFLNLGMERKLKKSIQKVDEFAENIIRARREEVSLENEEEDDDKRKSDLLTVFMRLKDKNGKSYSDKFLRDICVNFILAGRDTSSVALSWFFWLVDQNHEVEEKILEEICRVVSEREDIKKKVLNDSLRFKAEEIKKMDYLHAALSEALRLYPSVPLDHKEVLEDDTFPDGTKLKKGTKVIYAIYSMGRMKSIWGKDCLEFKPERWLTKDGHFMSESAYKFTAFNGGPRLCLGKDFAYYQMKYVAASIIFRYHVKVVENHHVVPKLSLTLYMKHGLKVTLHRRSDVEIHNLKFVSK