AlfalfaGEDB | MS.gene39425

M. sativa cultivar XinJiangDaYe / MS.gene39425

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39425.t1	RHN62463.1	93.6	519	33	0	1	519	1	519	4.90E-281	976.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39425.t1	P37118	53.5	467	212	4	52	513	37	503	5.2e-138	492.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39425.t1	A0A396ICF0	93.6	519	33	0	1	519	1	519	3.5e-281	976.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050301	MS.gene39425	0.802718	4.91E-49	-1.69E-46
MS.gene050432	MS.gene39425	0.820219	7.70E-53	-1.69E-46
MS.gene050767	MS.gene39425	0.827035	1.95E-54	-1.69E-46
MS.gene050770	MS.gene39425	0.827402	1.60E-54	-1.69E-46
MS.gene052508	MS.gene39425	0.865816	4.49E-65	-1.69E-46
MS.gene052510	MS.gene39425	0.850528	1.60E-60	-1.69E-46
MS.gene053209	MS.gene39425	0.808179	3.52E-50	-1.69E-46
MS.gene054376	MS.gene39425	0.834686	2.60E-56	-1.69E-46
MS.gene055277	MS.gene39425	0.820417	6.94E-53	-1.69E-46
MS.gene055390	MS.gene39425	0.815288	9.98E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene00054	MS.gene39425	PPI
MS.gene00055	MS.gene39425	PPI
MS.gene00056	MS.gene39425	PPI
MS.gene003430	MS.gene39425	PPI
MS.gene008145	MS.gene39425	PPI
MS.gene008451	MS.gene39425	PPI
MS.gene008452	MS.gene39425	PPI
MS.gene008464	MS.gene39425	PPI
MS.gene008465	MS.gene39425	PPI
MS.gene008470	MS.gene39425	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39425.t1	MTR_4g089055	94.798	519	27	0	1	519	1	519	0.0	1019
MS.gene39425.t1	MTR_4g089020	84.400	500	74	2	19	518	1	496	0.0	875
MS.gene39425.t1	MTR_4g089030	79.048	525	100	5	1	519	1	521	0.0	850
MS.gene39425.t1	MTR_4g089025	78.967	523	105	4	1	519	1	522	0.0	846
MS.gene39425.t1	MTR_0022s0290	58.140	516	199	6	17	515	2	517	0.0	602
MS.gene39425.t1	MTR_4g104610	58.929	504	189	8	20	513	1	496	0.0	598
MS.gene39425.t1	MTR_4g104550	57.676	482	192	6	37	513	17	491	0.0	573
MS.gene39425.t1	MTR_4g104540	57.143	434	176	4	87	515	1	429	0.0	518
MS.gene39425.t1	MTR_3g076530	45.294	510	258	6	12	515	9	503	4.10e-155	452
MS.gene39425.t1	MTR_4g104660	43.611	493	268	6	22	508	19	507	9.74e-147	431

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39425.t1	AT3G48270	49.679	467	225	4	49	513	28	486	3.36e-171	493
MS.gene39425.t1	AT3G48280	48.941	472	232	4	46	515	24	488	2.76e-170	490
MS.gene39425.t1	AT3G48290	49.684	475	225	6	43	513	24	488	9.20e-170	489
MS.gene39425.t1	AT3G48310	49.036	467	228	5	49	513	29	487	2.60e-167	483
MS.gene39425.t1	AT3G48300	50.540	463	213	7	54	513	31	480	8.94e-164	473
MS.gene39425.t1	AT3G48300	50.540	463	213	7	54	513	33	482	9.57e-164	473
MS.gene39425.t1	AT3G48290	47.106	501	225	7	43	513	24	514	1.98e-163	474
MS.gene39425.t1	AT3G48320	47.358	492	243	6	27	513	7	487	8.18e-161	466
MS.gene39425.t1	AT4G13310	46.960	477	238	5	46	513	25	495	8.24e-157	456
MS.gene39425.t1	AT2G30770	46.921	471	236	5	47	510	28	491	3.32e-155	452

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Find 118 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAATGAGGAATAG+TGG	0.437413	4.2:+21921587	None:intergenic
AAAAGATACCGTGATGAAGG+TGG	0.632424	4.2:-21921044	MS.gene39425:CDS
AAATCTTGGAGTGTGCAATG+AGG	0.647247	4.2:+21921449	None:intergenic
AAATTGCCTGATGGAGTAGA+AGG	0.459986	4.2:-21919640	MS.gene39425:CDS
AACAGTTCAATAGATTATAA+AGG	0.357003	4.2:-21919778	MS.gene39425:CDS
AAGAGAACTTTGTAGAAAGG+TGG	0.567470	4.2:+21921658	None:intergenic
AAGATAGTGAAGAAAAGCAT+AGG	0.492921	4.2:+21921611	None:intergenic
AATCTTGGAGTGTGCAATGA+GGG	0.564618	4.2:+21921450	None:intergenic
AATTCTTCGCCTTCACCTCC+CGG	0.466141	4.2:-21919956	MS.gene39425:CDS
AATTGATAGAACTGCAATTA+AGG	0.209450	4.2:-21920754	MS.gene39425:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAGAAATGAGGAATAG+TGG	+	chr4.2:21919624-21919643	None:intergenic	30.0%
ACCTTGTTCATCAATTTGAT+TGG	-	chr4.2:21921545-21921564	MS.gene39425:CDS	30.0%
AGAAAAAGTAGCCAAACATA+TGG	-	chr4.2:21920301-21920320	MS.gene39425:intron	30.0%
ATAGGATATGTTGGTACTAT+AGG	+	chr4.2:21920973-21920992	None:intergenic	30.0%
ATGGAAGATATCAAACTAGA+GGG	-	chr4.2:21921301-21921320	MS.gene39425:CDS	30.0%
ATTACATACCTTCGCTTAAT+TGG	-	chr4.2:21920246-21920265	MS.gene39425:intron	30.0%
CATATTTGTGAGCTAAATCT+TGG	+	chr4.2:21919776-21919795	None:intergenic	30.0%
TAGGATATGTTGGTACTATA+GGG	+	chr4.2:21920972-21920991	None:intergenic	30.0%
TATGGAAGATATCAAACTAG+AGG	-	chr4.2:21921300-21921319	MS.gene39425:CDS	30.0%
TCCAATCAAATTGATGAACA+AGG	+	chr4.2:21921549-21921568	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	21919546	21921684	21919546	ID=MS.gene39425
chr4.2	mRNA	21919546	21921684	21919546	ID=MS.gene39425.t1;Parent=MS.gene39425
chr4.2	exon	21920743	21921684	21920743	ID=MS.gene39425.t1.exon1;Parent=MS.gene39425.t1
chr4.2	CDS	21920743	21921684	21920743	ID=cds.MS.gene39425.t1;Parent=MS.gene39425.t1
chr4.2	exon	21919546	21920163	21919546	ID=MS.gene39425.t1.exon2;Parent=MS.gene39425.t1
chr4.2	CDS	21919546	21920163	21919546	ID=cds.MS.gene39425.t1;Parent=MS.gene39425.t1

Gene Sequence

>MS.gene39425

ATGTCCACCTTTCTACAAAGTTCTCTTTCAAATGAAATCTTCTCTTCATTCCCTATGCTTTTCTTCACTATCTTTCCACTATTCCTCATTTCTCTTTTTGCCATCATAAAATACTGGCATAATTCCAACAATTCTTCTGCCACCAAAATAAACTTACCTCCTTCACCTCCAAGATTTCCTCTACTTGGCAATCTCCATCAACTTGGCTTATTCCCTCATTGCACACTCCAAGATTTAGCTCACAAATATGGCCCTTTAATGCTTCTTTATTTTGGTAAGGTACCAGTGGTTGTAGTTTCCTCTGCTGATGCAGCAAGTAAAGTAATGAAAACTCACGACTCGGTCTTTTGTGATAGACCACATCGTAAAATCTTTGATATCCTTTTCTACGGTTCCAAAGATGTGGCAAGTTGTGGATATGGTGAGTACTGGAAACAAGTAAGGAGCCTCAGTGTATTAAACCTTCTGAGTAACAAAAGAGTTCAATCTTATCGTCGTGTTAGAGAGGAAGAAACTGCAAAAATGATGCAAAGTATTCAACAGAAGAATACTTCTGTGAATCTAACAGAGTTGTGTTCTACAGTTACTAATGATATAACATGCAGGGTGGTTCTAGGCAAAAGATACCGTGATGAAGGTGGAGTGCTTCCGGAGTTAATGTTGGAGTTTGGAGAGTTATTGGTTATTTTCTTTATAGGAGATTACATACCTTCGCTTAATTGGTTGGGTAAGGTTAATGGTTTTTATAGTAAGGCAGAAAAAGTAGCCAAACATATGGATGCATTTTTTGAAAAAGTTATTGATGAGCACATCATTGGTAGCAGATCTGATGGCCATGTTGGTGAAGGAAACAGTGATTTTGTGGACGTTTTGCTTTCAGTTCAAAAGAGCAATGCTGCTGGCTTCTCAATTGATAGAACTGCAATTAAGGGTTTGTTACTGGTAAGAATATTATTGTTTTTCCCTTTTAGTTATGTCACTTACAAACAAATTTTGTGCATTAAGTTCTATGAAATTGATTCCCAGACCAGAAGCATAAAATTCATTTTGATATGTTTGCCTCTTATGCAATAAAATTGATGTTGTTTCCATAAAATTGAGTGTATTTTTGGATGAGCGGTTAATTTGTCAAAATCACAGCGTCATCATGATTTTGTTCAAGCTCTCAAGTGTACTTTTCAACAAAATCGTGGTGGCTCACCGTAATTTGAAGCTCTCAAGTGTACTTGTCAATCCTACCCTCAATCCAAACACGCAACAGTCACTCTAACTGAATCTAAAATTTGAAGCTTCTACATCAAAATGTAATTTTTTTTATTTGAAAGTTATTGTTTGGCTCACTTTTAGGTGAATGCTTTAACGCGAATCATTTTTATGCTGTCTTACTGTTAGCCAGCATCAATTAATTTATATCAATTTCCGTCCCTATAGTACCAACATATCCTATGAATCATAAGATTTAGTGAAATTAGTAAGGTTTGGTAGCTACATGGTATAAACTAAATTGTACTTTCTCTGCAGGACATGTTTATTGCAGGTACCGATACTACCTACACAGTCCTAGAATGGGCAATGACAGAACTACTAAGACACCAAACTGTGATGCATAAATTGCAAGATGAGGTGAGAACTGTGGTTGGTAATAGAACTCATGTAACTGAAGAGGATTTGGTTAACATGAACTACTTGAAGGCTGTGATCAAAGAAATTCTTCGCCTTCACCTCCCGGTTCCCTTATTAGTCCCTCGGAAATCTATGGAAGATATCAAACTAGAGGGCTATGACATTGCAGCTGGTACACAGGTAATCGTCAATGCTTGGGCAATTGCAAGAGACTCTTCAATTTGGGAACAACCTCTAGCATTTAAACCAGAAAGGTTTATGAACAGTTCAATAGATTATAAAGGATTGGATTTTGAACTTATCCCATTTGGAGCAGGAAGGAGAGGTTGTCCTGGAGTGTTGTTTGCTCTTTCTATCAATGAATTGGTTTTAGCAAACCTTGTTCATCAATTTGATTGGAAATTGCCTGATGGAGTAGAAGGAAAGGATTTGGACATGTCTGAAACTAATGGCCTTACTTGTCGTAGAAAATACCCTCTACTTGCAGTTGCTACCAAATATGACAGAAATGAATAA

Protein sequence

>MS.gene39425.t1

MSTFLQSSLSNEIFSSFPMLFFTIFPLFLISLFAIIKYWHNSNNSSATKINLPPSPPRFPLLGNLHQLGLFPHCTLQDLAHKYGPLMLLYFGKVPVVVVSSADAASKVMKTHDSVFCDRPHRKIFDILFYGSKDVASCGYGEYWKQVRSLSVLNLLSNKRVQSYRRVREEETAKMMQSIQQKNTSVNLTELCSTVTNDITCRVVLGKRYRDEGGVLPELMLEFGELLVIFFIGDYIPSLNWLGKVNGFYSKAEKVAKHMDAFFEKVIDEHIIGSRSDGHVGEGNSDFVDVLLSVQKSNAAGFSIDRTAIKGLLLDMFIAGTDTTYTVLEWAMTELLRHQTVMHKLQDEVRTVVGNRTHVTEEDLVNMNYLKAVIKEILRLHLPVPLLVPRKSMEDIKLEGYDIAAGTQVIVNAWAIARDSSIWEQPLAFKPERFMNSSIDYKGLDFELIPFGAGRRGCPGVLFALSINELVLANLVHQFDWKLPDGVEGKDLDMSETNGLTCRRKYPLLAVATKYDRNE