AlfalfaGEDB | MS.gene39430

M. sativa cultivar XinJiangDaYe / MS.gene39430

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39430.t1	RHN62458.1	95.4	517	23	1	1	517	1	516	6.60E-286	992.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39430.t1	P37117	53.1	480	218	5	41	513	26	505	7.0e-143	508.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39430.t1	A0A396ICD9	95.4	517	23	1	1	517	1	516	4.8e-286	992.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049230	MS.gene39430	0.822658	2.11E-53	-1.69E-46
MS.gene049378	MS.gene39430	0.832502	9.11E-56	-1.69E-46
MS.gene049669	MS.gene39430	0.802116	6.54E-49	-1.69E-46
MS.gene050227	MS.gene39430	0.80008	1.70E-48	-1.69E-46
MS.gene050228	MS.gene39430	0.806709	7.21E-50	-1.69E-46
MS.gene050442	MS.gene39430	0.805074	1.59E-49	-1.69E-46
MS.gene050605	MS.gene39430	0.811028	8.59E-51	-1.69E-46
MS.gene050642	MS.gene39430	0.806513	7.93E-50	-1.69E-46
MS.gene050680	MS.gene39430	0.800901	1.16E-48	-1.69E-46
MS.gene050750	MS.gene39430	0.83016	3.43E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene008464	MS.gene39430	PPI
MS.gene02752	MS.gene39430	PPI
MS.gene049552	MS.gene39430	PPI
MS.gene049562	MS.gene39430	PPI
MS.gene049563	MS.gene39430	PPI
MS.gene052501	MS.gene39430	PPI
MS.gene052820	MS.gene39430	PPI
MS.gene052823	MS.gene39430	PPI
MS.gene052825	MS.gene39430	PPI
MS.gene05753	MS.gene39430	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39430.t1	MTR_4g089020	95.976	497	20	0	21	517	1	497	0.0	996
MS.gene39430.t1	MTR_4g089055	81.154	520	92	2	1	516	1	518	0.0	880
MS.gene39430.t1	MTR_4g089030	79.693	522	98	4	1	516	1	520	0.0	867
MS.gene39430.t1	MTR_4g089025	76.527	524	112	7	1	516	1	521	0.0	820
MS.gene39430.t1	MTR_4g104610	59.325	504	191	6	22	515	1	500	0.0	628
MS.gene39430.t1	MTR_4g104550	58.799	483	190	6	38	515	17	495	0.0	602
MS.gene39430.t1	MTR_0022s0290	56.324	506	208	5	21	513	12	517	0.0	602
MS.gene39430.t1	MTR_4g104540	58.391	435	171	4	85	514	1	430	0.0	537
MS.gene39430.t1	MTR_3g076530	45.674	497	257	5	23	513	14	503	8.76e-159	461
MS.gene39430.t1	MTR_4g104660	45.328	503	267	6	10	506	7	507	2.11e-154	451

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39430.t1	AT3G48280	49.197	498	239	6	18	513	3	488	3.14e-180	515
MS.gene39430.t1	AT3G48270	49.893	467	224	4	47	511	28	486	3.86e-177	508
MS.gene39430.t1	AT3G48290	50.636	472	223	5	42	511	25	488	5.04e-176	504
MS.gene39430.t1	AT3G48310	50.321	467	222	4	47	511	29	487	5.04e-175	502
MS.gene39430.t1	AT3G48300	50.866	462	213	6	52	511	31	480	1.34e-170	491
MS.gene39430.t1	AT3G48300	50.866	462	213	6	52	511	33	482	1.43e-170	491
MS.gene39430.t1	AT3G48290	47.992	498	223	6	42	511	25	514	6.45e-170	490
MS.gene39430.t1	AT3G48320	48.790	496	239	7	19	511	4	487	2.86e-168	485
MS.gene39430.t1	AT4G13310	47.934	484	235	7	38	511	19	495	1.25e-161	468
MS.gene39430.t1	AT5G24950	45.493	477	247	5	42	511	24	494	5.93e-156	454

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Find 105 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAATCTTGGAGGTGA+AGG	0.571592	4.2:+21965546	None:intergenic
AAAGGATGTTCCCAACTTGA+AGG	0.463954	4.2:+21964073	None:intergenic
AAATCTTGGAGTGATCTGTG+AGG	0.718248	4.2:+21965492	None:intergenic
AAATGGTTGGGTAAGGTTAA+TGG	0.219506	4.2:-21964988	MS.gene39430:CDS
AAATTGCCTGATGGAATAGC+AGG	0.494543	4.2:-21963887	MS.gene39430:CDS
AACAGAAGAGAAAGTAAGAG+TGG	0.470103	4.2:+21965618	None:intergenic
AACGGCTATGACATTGAAGC+TGG	0.527947	4.2:-21964136	MS.gene39430:CDS
AAGATACTAAAGAAAAGCAT+AGG	0.507251	4.2:+21965642	None:intergenic
AAGGATGTTCCCAACTTGAA+GGG	0.591317	4.2:+21964074	None:intergenic
AATAGTTCAATAGATTTCAA+AGG	0.515652	4.2:-21964025	MS.gene39430:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGATATGGTGAAAAAGG+TGG	-	chr4.2:21964405-21964424	MS.gene39430:intron	30.0%
AAAGATATGGTGAAAAAGGT+GGG	-	chr4.2:21964406-21964425	MS.gene39430:intron	30.0%
AAGGTATAGGGAATTTAGTA+TGG	-	chr4.2:21965037-21965056	MS.gene39430:CDS	30.0%
ACAGGTAATAATCAATGCTT+GGG	-	chr4.2:21965382-21965401	MS.gene39430:CDS	30.0%
ACCTTGTTCATCAATATGAT+TGG	-	chr4.2:21965582-21965601	MS.gene39430:CDS	30.0%
AGAAAAAGTGGCTAAACATT+TGG	-	chr4.2:21964542-21964561	MS.gene39430:intron	30.0%
ATAGGGAATTTAGTATGGTT+TGG	-	chr4.2:21965042-21965061	MS.gene39430:CDS	30.0%
ATTTATTATTCAGCTCACGT+AGG	-	chr4.2:21964903-21964922	MS.gene39430:CDS	30.0%
CATATTTGTGAGCTAAATCT+TGG	+	chr4.2:21964017-21964036	None:intergenic	30.0%
GAACTATTCATAAACCTTTC+TGG	+	chr4.2:21965455-21965474	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	21963793	21965721	21963793	ID=MS.gene39430
chr4.2	mRNA	21963793	21965721	21963793	ID=MS.gene39430.t1;Parent=MS.gene39430
chr4.2	exon	21964786	21965721	21964786	ID=MS.gene39430.t1.exon1;Parent=MS.gene39430.t1
chr4.2	CDS	21964786	21965721	21964786	ID=cds.MS.gene39430.t1;Parent=MS.gene39430.t1
chr4.2	exon	21963793	21964410	21963793	ID=MS.gene39430.t1.exon2;Parent=MS.gene39430.t1
chr4.2	CDS	21963793	21964410	21963793	ID=cds.MS.gene39430.t1;Parent=MS.gene39430.t1

Gene Sequence

>MS.gene39430

ATGTCAACTTTTCTGCCAAGTTCTCTTTCACATGAAAGCTTATATTATTCATTACTCCCTATGCTTTTCTTTAGTATCTTTCCACTCTTACTTTCTCTTCTGTTCATCATCAAATGGTACTTCAACAATTCTGCCACCAAAAAACACATACCACCTTCACCTCCAAGATTTCCTTTACTTGGTAATCTCCATCAAGTTAGCTTATTCCCTCACAGATCACTCCAAGATTTAGCTCACAAATATGGTCCTTTAATGCTTCTTTATTTAGGGAAGATACCAGTGGTTGTAGTTTCCTCAGCTGATGCAGCAAGTCAGGTAATGAAAACTCATGACTTGATCTTCTCTGATAGGCCACAGCGTAAAATCTTTGATATCATGTTGTATGGTTCCAAAGATGTAGCAAGTTGTGCATATGGTGAGTATTGGAGACAAGTAAGGAGTCTCAGTGTGTTACACCTTTTGAGTAACAAAAGGGTTCAATCTTATCGTCGTGTTAGAGAGGAAGAAACTGCAAAAATGATGCAAAATATTCAAGAGAAGAGTTCTTGTGTGAATTTAACAGAATTGTGTTCTACAATTACTAATGATATAACATGTAGGGTGGCTCTAGGAAAAAGATATGGTGAAAAAGGTGGGGTATTGCCGGAGCTGATGTTGGAGTTTGGAGAGTTATTGGGTTCATTCTTTATAGGAGATTATATACCTTGGCTTAAATGGTTGGGTAAGGTTAATGGTTTCTATAGCAAGGCAGAAAAAGTGGCTAAACATTTGGATGAGTTTTTTGAGAAAGTTATTGAGGAGCACATCAGTGGTAGTAGATCTGATGGACATGTTGGTGAGGGAACCAGTGATTTTGTGGACATTTTGCTTTCAGTTCAAAAGAGCAATGCTGCTGGCTTCTCAATTGATAGAACTGCAATTAAGGGTTTGTTACTGGTAAGAATAACATTTTTTTCCCTTTCCTTTTAGTTATATATTACTTGCTAAATATATTCTGTAAATTAGATAGTACTGTAAATTTGATTTTGATATATTTTCTTATATTCGAGTAGAAATGATTTTGTATCAGATTTGTATCTTCTCTATCCAAACATAACTATTCAAATTGAAATTTATTATTCAGCTCACGTAGGCGTGAATCCATACATAAATAATTTTACATTATATTTGACTCACTTTTAACCATAATCAGTTCATTCAAATAATTTTTTGTCACTATAGTATCAACACACACCAAGTGTCCTAAGGTATAGGGAATTTAGTATGGTTTGGTAACTACATGGTGTAACTAAAACTGTACTTTCTCTGCAGGACATGTTTGCTGCAGGTACTGATACTACCTACACAGTTCTAGAATGGGCAATGACAGAACTTTTAAGAGACCAAACTGTGATGCATAAATTGCAAGATGAGGTGAGAACTGTGGTTGGTAATAGGACTCATGTAACTGAAGAGGATTTGGTTAACTTGAACTACTTGAAAGCTGTGATTAAAGAAACTCTTCGCTTGCATGTCCCGATTCCATTATTAGTCCCTCGGAAATCAATGGAAGATATCAAACTAAACGGCTATGACATTGAAGCTGGAACACAGGTAATAATCAATGCTTGGGCTATTGCAAGAGACCCTTCAAGTTGGGAACATCCTTTAGAGTTTAAACCAGAAAGGTTTATGAATAGTTCAATAGATTTCAAAGGATTTGATTTTGAACTTATTCCATTTGGAGCAGGAAGGAGAGGTTGTCCTGGAGTGTTGTTTGCTGTTGCTGTGAATGAATTGGTGTTAGCAAACCTTGTTCATCAATATGATTGGAAATTGCCTGATGGAATAGCAGGGAAAGATTTGGACATGTCTGAAGTTGTTAGCTTTACTTGTCATAGAAAATACCCTCTCATTGCAATAGCCACCAAATATGAGAAAAATGTATAA

Protein sequence

>MS.gene39430.t1

MSTFLPSSLSHESLYYSLLPMLFFSIFPLLLSLLFIIKWYFNNSATKKHIPPSPPRFPLLGNLHQVSLFPHRSLQDLAHKYGPLMLLYLGKIPVVVVSSADAASQVMKTHDLIFSDRPQRKIFDIMLYGSKDVASCAYGEYWRQVRSLSVLHLLSNKRVQSYRRVREEETAKMMQNIQEKSSCVNLTELCSTITNDITCRVALGKRYGEKGGVLPELMLEFGELLGSFFIGDYIPWLKWLGKVNGFYSKAEKVAKHLDEFFEKVIEEHISGSRSDGHVGEGTSDFVDILLSVQKSNAAGFSIDRTAIKGLLLDMFAAGTDTTYTVLEWAMTELLRDQTVMHKLQDEVRTVVGNRTHVTEEDLVNLNYLKAVIKETLRLHVPIPLLVPRKSMEDIKLNGYDIEAGTQVIINAWAIARDPSSWEHPLEFKPERFMNSSIDFKGFDFELIPFGAGRRGCPGVLFAVAVNELVLANLVHQYDWKLPDGIAGKDLDMSEVVSFTCHRKYPLIAIATKYEKNV