AlfalfaGEDB | MS.gene031398

M. sativa cultivar XinJiangDaYe / MS.gene031398

KEGG: -
GO: -
PFAM: PF00415.21 PF13540.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031398.t1	XP_013464729.1	96.9	491	15	0	1	491	1	491	5.10E-280	973

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031398.t1	Q9FN03	30.9	353	229	8	116	464	20	361	1.1e-36	156.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031398.t1	A0A072V9P3	96.9	491	15	0	1	491	1	491	3.7e-280	973.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene008145	MS.gene031398	PPI
MS.gene016104	MS.gene031398	PPI
MS.gene023978	MS.gene031398	PPI
MS.gene026210	MS.gene031398	PPI
MS.gene031398	MS.gene052506	PPI
MS.gene031398	MS.gene052822	PPI
MS.gene031398	MS.gene058470	PPI
MS.gene031398	MS.gene63294	PPI
MS.gene031398	MS.gene052510	PPI
MS.gene031398	MS.gene48305	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031398.t1	MTR_2g079610	96.945	491	15	0	1	491	1	491	0.0	981
MS.gene031398.t1	MTR_3g086300	34.016	488	287	15	17	480	57	533	1.11e-62	213
MS.gene031398.t1	MTR_8g094410	31.044	364	239	7	116	477	18	371	2.32e-41	153
MS.gene031398.t1	MTR_8g094410	28.571	259	178	5	115	372	122	374	1.20e-24	106
MS.gene031398.t1	MTR_8g094410	33.333	156	99	2	324	478	14	165	5.19e-15	77.4
MS.gene031398.t1	MTR_8g094410	26.442	208	146	3	274	480	18	219	1.15e-14	76.3
MS.gene031398.t1	MTR_8g094410	28.177	181	123	4	114	291	224	400	7.46e-11	64.3
MS.gene031398.t1	MTR_8g094410	31.044	364	239	7	116	477	18	371	3.64e-41	153
MS.gene031398.t1	MTR_8g094410	29.008	262	173	6	115	372	122	374	2.31e-24	105
MS.gene031398.t1	MTR_8g094410	33.333	156	99	2	324	478	14	165	4.31e-15	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031398.t1	AT3G15430	69.729	479	144	1	1	479	1	478	0.0	704
MS.gene031398.t1	AT3G15430	69.729	479	144	1	1	479	1	478	0.0	704
MS.gene031398.t1	AT3G15430	69.729	479	144	1	1	479	1	478	0.0	704
MS.gene031398.t1	AT3G15430	69.729	479	144	1	1	479	1	478	0.0	704
MS.gene031398.t1	AT3G15430	69.729	479	144	1	1	479	1	478	0.0	704
MS.gene031398.t1	AT3G15430	69.729	479	144	1	1	479	1	478	0.0	704
MS.gene031398.t1	AT3G26100	32.909	471	284	13	17	466	54	513	1.32e-60	207
MS.gene031398.t1	AT3G26100	31.169	154	102	2	330	481	150	301	4.86e-15	78.2
MS.gene031398.t1	AT3G26100	32.909	471	284	13	17	466	54	513	1.32e-60	207
MS.gene031398.t1	AT3G26100	31.169	154	102	2	330	481	150	301	4.86e-15	78.2

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Find 107 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGACCTTGTCTGGTG+AGG	0.626951	2.1:+20367086	None:intergenic
AAAGGGGATTCCTTGCAAGC+AGG	0.536653	2.1:-20370337	MS.gene031398:intron
AACTCCTCGGTCTATTCTTG+CGG	0.533588	2.1:-20370762	MS.gene031398:CDS
AAGGGATATTGTGGAGCTTT+AGG	0.324554	2.1:-20366622	MS.gene031398:CDS
AAGTAAATTCCAAAGAAACA+AGG	0.633546	2.1:+20371542	None:intergenic
AATGAGTTGTATGATAGATG+TGG	0.688441	2.1:-20371397	MS.gene031398:CDS
AATGTCTCTCAGGTTTCAGC+AGG	0.470243	2.1:-20367127	MS.gene031398:intron
ACAAGACGTGGCCTGAAAAT+TGG	0.336669	2.1:+20370369	None:intergenic
ACAGTCTTCCTCACCAGACA+AGG	0.617222	2.1:-20367094	MS.gene031398:CDS
ACATGCGGAAGCAACTCGCA+TGG	0.645263	2.1:-20367061	MS.gene031398:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAACATGAATGTCTCTC+AGG	-	chr2.1:20370156-20370175	MS.gene031398:intron	30.0%
AAATTAGCTAGCTATGAAAG+GGG	-	chr2.1:20369193-20369212	MS.gene031398:intron	30.0%
AATGAAAAACCAAGCATACT+AGG	-	chr2.1:20368263-20368282	MS.gene031398:intron	30.0%
AATGAGTTGTATGATAGATG+TGG	-	chr2.1:20365896-20365915	MS.gene031398:CDS	30.0%
ACATGTGAATACCTGAAAAT+TGG	+	chr2.1:20366859-20366878	None:intergenic	30.0%
ACCTTAAAACAGTTCTTCTA+AGG	+	chr2.1:20369082-20369101	None:intergenic	30.0%
AGATAGAAAACTGATAGCAA+AGG	+	chr2.1:20369794-20369813	None:intergenic	30.0%
ATAAGAAGTGAAAGGAATAC+AGG	-	chr2.1:20369870-20369889	MS.gene031398:intron	30.0%
ATGAAAAACCAAGCATACTA+GGG	-	chr2.1:20368264-20368283	MS.gene031398:intron	30.0%
ATGAAATAAACCAAGTTGCT+TGG	+	chr2.1:20367834-20367853	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	20365659	20371656	20365659	ID=MS.gene031398
chr2.1	mRNA	20365659	20371656	20365659	ID=MS.gene031398.t1;Parent=MS.gene031398
chr2.1	exon	20371318	20371656	20371318	ID=MS.gene031398.t1.exon1;Parent=MS.gene031398.t1
chr2.1	CDS	20371318	20371656	20371318	ID=cds.MS.gene031398.t1;Parent=MS.gene031398.t1
chr2.1	exon	20370617	20370826	20370617	ID=MS.gene031398.t1.exon2;Parent=MS.gene031398.t1
chr2.1	CDS	20370617	20370826	20370617	ID=cds.MS.gene031398.t1;Parent=MS.gene031398.t1
chr2.1	exon	20370338	20370448	20370338	ID=MS.gene031398.t1.exon3;Parent=MS.gene031398.t1
chr2.1	CDS	20370338	20370448	20370338	ID=cds.MS.gene031398.t1;Parent=MS.gene031398.t1
chr2.1	exon	20366769	20367137	20366769	ID=MS.gene031398.t1.exon4;Parent=MS.gene031398.t1
chr2.1	CDS	20366769	20367137	20366769	ID=cds.MS.gene031398.t1;Parent=MS.gene031398.t1
chr2.1	exon	20366552	20366659	20366552	ID=MS.gene031398.t1.exon5;Parent=MS.gene031398.t1
chr2.1	CDS	20366552	20366659	20366552	ID=cds.MS.gene031398.t1;Parent=MS.gene031398.t1
chr2.1	exon	20365659	20365997	20365659	ID=MS.gene031398.t1.exon6;Parent=MS.gene031398.t1
chr2.1	CDS	20365659	20365997	20365659	ID=cds.MS.gene031398.t1;Parent=MS.gene031398.t1

Gene Sequence

>MS.gene031398

ATGGGAGATCATTATAGAGCTGTTTCTTTTGAGGAGTTACCTTCACATTTGATATTGGAAATTCTGTGCTCAGGGAAGCTCAGTGCAATGGACCTTGTTTCTTTGGAATTTACTTCAAAAACTTTTGGTGCTAGAAATGGCATATACCCTTTAAAGTTTAAGTCATTGGTAGACTTTGCTGCATTTCAGTTGTGTAGTTCTCATGCCATCTTTTCCCAGATGTGTTTGAATTCTCAGAATGAGTTGTATGATAGATGTGGCAGAAATTGGAAGCGAGTTTTGAGGTTCTTGCAGTCTTTGGAACAATCATCTGATATGGTTGAGACATCATTAGGAAATGTACTATTTATTTCACTATACAAACCATTGTGTTTTATTGTTATGTTTGTTGCCTTTCGAATTATGAGTTGCCGTTTTTTCTGTTTTTATTTTGTATTAAGTTTCTTAACATTGGTGATGTTTTATGTTTTTCACTTTGCTTTTCAACTCCAAGATGTTTAATGTTTCACTTTGCTCTATGTCACCATTGTACATTTATAATAACTGATGTAATAATGCATTTGTGCAATAATTAGAACAGCGAAAAGAAAAGGAAATGGATTTGGAATATTTAATGTTGTATAATGATTGTTTAAAAAATTTCATAATTTGGATAATTATTCATTGCTATTTTTTCTTGTGTCATCGTGCATGTGTCAGTACGACACTGACACGTTGCCATCGGAACTGTGAGTGCTGCATAGACTTTTTCTTGCTTGTCTGTACTATTCTTATTGTTCTTTTATAAGAAGTGGAGTTGGAACTTATGATGATTGGCATTTAATTGGCAGATGCAAATTACGACAGGCAAGTATCACACCTTGGCAATCAGAAACTCCTCGGTCTATTCTTGCGGTTCTAGTTTGTGTGGTGTACTTGGTCAAGGGTCTGAAACAACACAGCGTACGGCGTTTACGCGAATTAGTTTCCCAACTTTGGCGCGCGTGGCACATGTTTCGGCCTCATATAACCATGCAGCTTTGGTTATGGAATCTGGAGAGGTTTGTAAATGCTTAACCTTTATTCAATTAGTTATGACTCATTAGCATGTCATTAATCTGGAATAAATTACTATGCATGTTTCATTATTGCTTTATGTTCTTGGAATTGAAACCAATGGTTTTAGATCGTAAAATGATTAATAATTGTTTCCGTCGACCAATTTTCAGGTATTCACATGTGGAGATAATTCATCTTTTTGTTGTGGTCATAAAGATACAAATCGACCAATTTTCAGGCCACGTCTTGTTGAATCCTTAAAGGGGATTCCTTGCAAGCAGGTAAAAACAGAATACCAATTACTCTGCTTCTATTATTTTTACTCTGTTTTCTTTTGATCTTGGTCTGATATATTTTTAAATTAGCTATTTAGTCGTTTCACGAAGTTTGCAATAAGATACATTTTGTAGTTCCAATCATAGTCACATAATTTCCAGAAGTATATAGGGAACTGCTAAATGGTTTGCATGAACCAATTTGCGGTGATTTTCCGAATTGATTTGTCAAATTCTCAGTGAATTCATAAAAAGCCGTAAACCTAAAAGACGGAAGAGTAAACGTTTTGGAGAACAGGGTAGTGGCAGCCACAGGAAGGTAAGGGGTTTTCGCGTGGGAGAGAAAGAGGACTTAGCAAAGTAGAGAATGCTATTTAATGTAATGAATGTTAATTTATAATAGAGCTTGATGTTTCTCTGATAACCAAGATTCTGGAACGTGAGTTTTTAAATGAATGCTAAAAACTAATAACTCTTCTGAATAAAAAAAATGTGACACCTGAAATAACAAATACTAGTTAATTTTGAAAATAGTGAAATCTTTTCTAAATTAAAAAGCTAATAATTTACTAACTAATTATTATATTTAAGATTGAAGATGTGAAATTCTCTGATGGTCTTTCAAATTTGTCTTTAATCCTACAATTTATTTATGTTTAGTATATGTATTTTAATTTTAATATTTCATGTTAATTTTTTTTTTTTTTGGCTTTCGCACCGGTTTCCAACCCACCAAAGGTGGGCGACTAATCTGGCTCATGCGTAGAGGCATGCGCACTAGCCAAGTGTTGTTCCCCCTGGGAATCGAACCCGGTATTCCCCGGGTACGTCCTTGGAAGGAGCTCCTTGCCACTGGAGCCCAAGCAACTTGGTTTATTTCATGTTAATTTTCATTGATGATATTTGATATATTTTTTCCATGTAATTTTTAGTTTATAATTAGGTAAACAAATTTGATTGATAGCGTACTCGTAGCATGTACCGAAGATAATTGCGAACCTGGTGAATATGGTTCCAATTTCTTACGAAGTTATTTTGAGGAGGTTATTATCCCTTTCATAAAGGTGGTTCGTCATATCCTATTCTATGTTAACTGTTCTAACTAGTATGGACCCTCTCGCATACGCTCCATTTATTGATCATCAGTTCTAGTCATTGGGCATATCAGTATTTTAGTAAACAATTTAGATTTTTTATTGGGTACCTCAATTTTGAGAAGTTCCAAAATTTGTTGTTGGTCCTTTTGTTTCCATTGAATACATCATCCTGGGTTGAGACACCGATTAGTTGAAATGAAAAACCAAGCATACTAGGGTTCTGAGAATTGGAGATGGTGCTAGGGCAAAAAGCAACGGGCTAGCAATGAAGACAATGTGGTTCACCTCGTTCTGAGAGCTGGGTGTCATCAGGGGTAAGGATCGATGGGTGCTTGGAGTAACCAGTCCATTGAGGTAAGGAGGTTGTGAAGTAAGGGAGGAAAGTGAAGTTCAAGAATTGATAACGGCTTCCCCTTCTTATTATTGTGATATTTTTTTTTTCTATTCAGTTTTTATTTGAGTGGAGATTGGTGAAAATGATTCGGGGAGTTATTCCTTTATTTTGCAAGGATTCCACTTGGATATGGATTGTTGGTAGAAGTGTGATGCAAAAACAAGCGCCTTCTTCATCCCTGGTTACTTAGCTTTTTCACTCTTGTTTTTATTTTGAGATTCAGCAAAGCTTGCAATAGGAAAGATTTGTCTATCCTTTCACACTTTCTTTATTAAAGTTGGTATTTGCGATGAAGATGAAGAAGATAGGATGTGTTGATTTGAGAAAACATAGTGGTTTTCATGATTGATCAAGGGATATCTTGACTGACTTGATGAAGGGGGAGATGGCCAATCTTGACTAACTTGTTGAAGGGGGAGATGGCCAATCTAATGACTTAATTGGGGATTGATTTTCAATTTTAAACAAATTAGATTCTTCCTATAAAAAGAGTCGGTTAATAATAACCTATGCTGTGTGTGAAAATGGTAGTCTGGGTGGACCACGTGTTTAATAAGTGGTTCTTCTCGGTCAGCATTTTATGTCACGGTTTTCCTAACATGTGCAATGTTGTACACCTTAGAAGAACTGTTTTAAGGTAATATAAATCTAAATTCTCATTGGATGACTAATATCACTTTAGTCTAAATATCCTGATAAACAATCAGGCACTTGGGGAACCTTCCCTTAAAAATTAGCTAGCTATGAAAGGGGGAAAACCAATCCACAATACCGAAGTTCCTATCTGATCCCAAAGCTCCCTTTGATTCAAATATTTATAATGTTTTCTACCTTGCAATATGTTTTGATATTTGATTTATATATTTTGAAGAAGTCTGTACCAAAGCATTTTGTGGTTTTAATTCATTTCCAAGTTATTTGAAGGGGGTTCTTGTCTCTTCGATGAAAATGTTGTAGTTTTGTCATATATTTGAAATATCATTTGTTGTTCCAAGTTACACGATAACAAATCTTGAGTCTAAACAACTGTCCATTCCAATTGGCATAAGATGTTCCACCAGTTTTCTGTGATGTATGTGCTCAGTATTATTTTGGGTATCCGTGAAGGCATTAACTCCTCAAAGTTAAAAATTTTAAGCCAATTTATACTTCTAGTCCTTTAAATTAATTTTAGGTTTCACTTTGGTACCTTACTTTTTTTTTTCCGTTCCATTTTGGTCCCTAAGTTACTAATGTTGGACATTTCGGTCCTTTTCTATCAGTTTTCTATCTGAGTCCATCAAAATGTTCTGTATGTAGCATTACGTTTGTTGTTTAGGTCTGACTCACCTTTGCTATCAGTTTTCTATCTGAGTCCATCAAAATGTTCTGTATGTAGCATTACGTTTGTTGTTTAGGTCTGACTCAATAAGAAGTGAAAGGAATACAGGAAACATTTGACGGATTTTTAACGGAAAACTGACATAAAGGACAAAGAACATTTATAAATTATGAGACCAAAATGCAACGGAAAAAACTTAACGGACCAAAGTGTCTAAATTTTGTAACTCAAGGGACCAAAGTCGAACAAAAAAAACATAAGGGACCAAAGTGAAACATAATTATAACTTATGGGATCAAAAGTGTAATTTGTCCATTATTATTATTATTATTCAATGAAGCCTATTTTGCAAGGTTTTCTCAAAAAGATATGAAATAACATGAATGTCTCTCAGGTTTCAGCAGGGCTAAACTTCACAGTCTTCCTCACCAGACAAGGTCATGTTTATACATGCGGAAGCAACTCGCATGGCCAACTTGGTCACAGTGACACTCAGGACAGACCAATCCCCAAAAAGATTGAAGTTCTTGGTAGTATAGGCCGTATTGCTCAAGTTGCTGCTGGACCAAACTATATCTTATCTGTAACAGAAGGTGGATCAGTATACTCTTTTGGATCAGGTTCTAATTTCTGTCTTGGCCATGGTGAGCAACATGACGAGTTACTGCCACGCTGCATACAGAAATTTAGAAGAAATGGTATTCATGTTGTCCGTGTATCTGCTGGGGATGAGCATGCAGCGGCGCTTGATTCAAATGGATTTGTGAGTTTCATTGGACAAAATAAATTTTCAATTTTAATTGTCACACTTGATTTGGGCTTTTGATGTACGTGTGAGAATAGTTTTTAAGTTTCTATTATTGATGTTTCAGGTATATACATGGGGCAAGGGATATTGTGGAGCTTTAGGCCATGGAGATGAGATTGAAAAGACAAGACCAGAGTTGTTGTCTAGTCTCAAACATCACTTAGTCGTTCAGGTATTATATCTAATGGTTTACGATGAAATTTTTGCGTTATAGGATCCATCTTTTCATTTGTTGTTTTCACTATAAGTAATAAAATTGCCACCTTGTTTTCACTTCTATCTATGGACTATTATCAAAACAATGATTCAGTGAGACATTGTAATTTTGTTTTCCTGCCAAATACCTTTCTTTACCATTACTAGTTCTTTCCCGCTTCTAAAATTTGTAGAGGAAACATAAAAAGTTGTTTTTAGTATTTCATGTACAAATCTTTTAATCTACAAAACAAAGTAAAAGCAATTATTTTTTTTTTTTTGTAATTAAAAGTGTAAAGAAGAAATATAAACAGAAAACATTTACTCGAACCAAATAAAGGTGTGTCTGGTGTTCGAGGTGCCGGACACCAACAACGCACTCTGTATTTTTCATATTATAACTGGTGTTGTCATGTTAGACTCAATGTCATGTCTGTGTTATTAGTGTTCATAGCGTTTTCGTCCTATTATTAAGATTTATAATGAGACTGCTCATTCCTATTCTATTCACATTATTATTGGTATTTGTAGGTGTGTGCAAAAAAGAGAAAAACCTTTGTGCTAGTTGATTCAGGTTTGGTCTATGGCTTTGGCTCCATGGCATTTGGAAGCCTAGGATTTCCGGACGTCAGAAGGTTAACTAATAAAATCTTGAAGCCTAGAATCTTATGCACATTAAGAACTCACCATGTTTCTCAAATTAGCACTGGCTTGTACCACACTGTGGTAGTCACTAACCGTGGAAAAATACTCGGCTTTGGAGACAATGAAAGAGCTCAACTTGGTCATGATACATTGAGACATTGCCTTGAGCCTACTGAAATCTTCATAGAAAATTCATCATCTGAAGATGTTGATCCTATGTTATAA

Protein sequence

>MS.gene031398.t1

MGDHYRAVSFEELPSHLILEILCSGKLSAMDLVSLEFTSKTFGARNGIYPLKFKSLVDFAAFQLCSSHAIFSQMCLNSQNELYDRCGRNWKRVLRFLQSLEQSSDMVETSLGNMQITTGKYHTLAIRNSSVYSCGSSLCGVLGQGSETTQRTAFTRISFPTLARVAHVSASYNHAALVMESGEVFTCGDNSSFCCGHKDTNRPIFRPRLVESLKGIPCKQVSAGLNFTVFLTRQGHVYTCGSNSHGQLGHSDTQDRPIPKKIEVLGSIGRIAQVAAGPNYILSVTEGGSVYSFGSGSNFCLGHGEQHDELLPRCIQKFRRNGIHVVRVSAGDEHAAALDSNGFVYTWGKGYCGALGHGDEIEKTRPELLSSLKHHLVVQVCAKKRKTFVLVDSGLVYGFGSMAFGSLGFPDVRRLTNKILKPRILCTLRTHHVSQISTGLYHTVVVTNRGKILGFGDNERAQLGHDTLRHCLEPTEIFIENSSSEDVDPML