AlfalfaGEDB | MS.gene052510

M. sativa cultivar XinJiangDaYe / MS.gene052510

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052510.t1	RHN62463.1	89.4	501	22	1	1	470	19	519	7.40E-252	879.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052510.t1	P37118	48.3	495	218	7	6	464	11	503	3.3e-123	443.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052510.t1	A0A396ICF0	89.4	501	22	1	1	470	19	519	5.3e-252	879.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050432	MS.gene052510	0.827349	1.64E-54	-1.69E-46
MS.gene050593	MS.gene052510	0.812792	3.55E-51	-1.69E-46
MS.gene050686	MS.gene052510	0.80258	5.24E-49	-1.69E-46
MS.gene050772	MS.gene052510	0.80476	1.85E-49	-1.69E-46
MS.gene052508	MS.gene052510	0.977928	9.01E-145	-1.69E-46
MS.gene052510	MS.gene053207	0.81176	5.96E-51	-1.69E-46
MS.gene052510	MS.gene054376	0.801736	7.82E-49	-1.69E-46
MS.gene052510	MS.gene055722	0.821809	3.31E-53	-1.69E-46
MS.gene052510	MS.gene05592	0.839138	1.90E-57	-1.69E-46
MS.gene052510	MS.gene057331	0.860861	1.54E-63	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene00056	MS.gene052510	PPI
MS.gene008145	MS.gene052510	PPI
MS.gene008451	MS.gene052510	PPI
MS.gene008464	MS.gene052510	PPI
MS.gene008474	MS.gene052510	PPI
MS.gene008653	MS.gene052510	PPI
MS.gene008654	MS.gene052510	PPI
MS.gene017540	MS.gene052510	PPI
MS.gene017541	MS.gene052510	PPI
MS.gene022558	MS.gene052510	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052510.t1	MTR_4g089055	88.822	501	25	1	1	470	19	519	0.0	902
MS.gene052510.t1	MTR_4g089020	78.400	500	73	3	1	469	1	496	0.0	794
MS.gene052510.t1	MTR_4g089025	74.059	505	95	5	1	470	19	522	0.0	749
MS.gene052510.t1	MTR_4g089030	73.373	507	94	7	1	470	19	521	0.0	739
MS.gene052510.t1	MTR_0022s0290	54.743	506	181	7	9	466	12	517	0.0	539
MS.gene052510.t1	MTR_4g104610	54.365	504	181	9	2	464	1	496	0.0	530
MS.gene052510.t1	MTR_4g104550	54.316	475	178	6	26	464	20	491	0.0	517
MS.gene052510.t1	MTR_4g104540	56.944	432	172	5	40	466	7	429	7.30e-180	510
MS.gene052510.t1	MTR_3g076530	43.215	479	229	5	25	466	31	503	1.29e-134	398
MS.gene052510.t1	MTR_4g104660	40.365	493	253	7	4	459	19	507	5.87e-127	379

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052510.t1	AT3G48280	45.127	472	219	5	28	466	24	488	2.84e-149	435
MS.gene052510.t1	AT3G48270	45.396	467	214	5	31	464	28	486	1.71e-148	432
MS.gene052510.t1	AT3G48290	45.684	475	213	8	25	464	24	488	1.25e-146	428
MS.gene052510.t1	AT3G48310	44.968	467	216	6	31	464	29	487	1.34e-146	428
MS.gene052510.t1	AT3G48300	46.104	462	204	7	36	464	31	480	2.70e-142	417
MS.gene052510.t1	AT3G48300	46.104	462	204	7	36	464	33	482	2.88e-142	417
MS.gene052510.t1	AT3G48290	43.313	501	213	9	25	464	24	514	1.06e-140	414
MS.gene052510.t1	AT3G48320	43.496	492	231	7	9	464	7	487	8.53e-139	408
MS.gene052510.t1	AT4G13310	42.977	477	226	6	28	464	25	495	1.08e-134	398
MS.gene052510.t1	AT2G30770	42.616	474	227	6	29	464	28	494	8.43e-131	388

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Find 104 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAATGAGGAATAG+TGG	0.437413	4.3:+23689561	None:intergenic
AAAAGATACCGTGATGAAGG+TGG	0.632424	4.3:-23689019	MS.gene052510:CDS
AAATTGCCTGATGGAGTAGA+AGG	0.459986	4.3:-23687615	MS.gene052510:CDS
AACAGTTCAATAGATTATAA+AGG	0.357003	4.3:-23687753	MS.gene052510:CDS
AAGATAGTGAAGAAAAGCAT+AGG	0.492921	4.3:+23689585	None:intergenic
AATTCTTCGCCTTCACCTCC+CGG	0.466141	4.3:-23687931	MS.gene052510:CDS
AATTGATAGAACTGCAATTA+AGG	0.209450	4.3:-23688729	MS.gene052510:CDS
AATTGGTTGGGTAAGGTTAA+TGG	0.221128	4.3:-23688920	MS.gene052510:CDS
ACAGGTAATCGTCAATGCTT+GGG	0.503263	4.3:-23687838	MS.gene052510:CDS
ACCTTGTTCATCAATTTGAT+TGG	0.342909	4.3:-23687638	MS.gene052510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAGAAATGAGGAATAG+TGG	+	chr4.3:23687545-23687564	None:intergenic	30.0%
ACCTTGTTCATCAATTTGAT+TGG	-	chr4.3:23689465-23689484	MS.gene052510:intron	30.0%
AGAAAAAGTAGCCAAACATA+TGG	-	chr4.3:23688221-23688240	MS.gene052510:intron	30.0%
AGTAATGAAAACTCATGACT+CGG	-	chr4.3:23687786-23687805	MS.gene052510:CDS	30.0%
ATAGGATATGTTGGTACTAT+AGG	+	chr4.3:23688893-23688912	None:intergenic	30.0%
ATGGAAGATATCAAACTAGA+GGG	-	chr4.3:23689221-23689240	MS.gene052510:CDS	30.0%
ATTACATACCTTCGCTTAAT+TGG	-	chr4.3:23688166-23688185	MS.gene052510:intron	30.0%
CAGAAGAATTGTTGGAATTA+TGG	+	chr4.3:23687586-23687605	None:intergenic	30.0%
TAGGATATGTTGGTACTATA+GGG	+	chr4.3:23688892-23688911	None:intergenic	30.0%
TATGGAAGATATCAAACTAG+AGG	-	chr4.3:23689220-23689239	MS.gene052510:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	23687521	23689604	23687521	ID=MS.gene052510
chr4.3	mRNA	23687521	23689604	23687521	ID=MS.gene052510.t1;Parent=MS.gene052510
chr4.3	exon	23689472	23689604	23689472	ID=MS.gene052510.t1.exon1;Parent=MS.gene052510.t1
chr4.3	CDS	23689472	23689604	23689472	ID=cds.MS.gene052510.t1;Parent=MS.gene052510.t1
chr4.3	exon	23688718	23689379	23688718	ID=MS.gene052510.t1.exon2;Parent=MS.gene052510.t1
chr4.3	CDS	23688718	23689379	23688718	ID=cds.MS.gene052510.t1;Parent=MS.gene052510.t1
chr4.3	exon	23687521	23688138	23687521	ID=MS.gene052510.t1.exon3;Parent=MS.gene052510.t1
chr4.3	CDS	23687521	23688138	23687521	ID=cds.MS.gene052510.t1;Parent=MS.gene052510.t1

Gene Sequence

>MS.gene052510

ATGCTTTTCTTCACTATCTTTCCACTATTCCTCATTTCTCTTTTTGCCATCATAAAATATTGCCATAATTCCAACAATTCTTCTGCCACCAAAAAAAACTTACCTCCTTCACCTCCAAGAATTCCTCTACTTGGTAACCTCCATCAACTTGGCTTATTCCCTCATTGTACTCTCCAAAATCTAGCTCACAAATATGGCCCTTTAATGCTTCTTTATTTTGGTAAGGTGCCGGTGTTGTAGTTTCCTCTGCTGATGCAGCAAGAGAAGTAATGAAAACTCATGACTCGGTCTTTGCTGATAGGCCACATCGTAAAATCTTTGATATCCTTTTTTACGGTTCCAAAGATGTGGCAAGTTGTGGATATGGTGAGTATTGGAAACAAGTAAGGAGTCTTAGTGTATTAAACCTTCTGAGTAACAAAAGAGTTCAATCTTATCGTCATGTTAGAGAGGAAGAAACTGCAAAAATGATGCAAAGTATTCAACAGAAGAATACTGCTGTGAATTTAACAGAGTTGTGTTCTACGGTTACTAATGATATAACATGCAGGGTGGTTCTAGGCAAAAGATACCGTGATGAAGGTGGAGTGCTTCCGGAGTTAATGTTGGAGTTTGGAGAGTTATTGGTTATTTTCTTTATAGGAGATTACATACCTTCGCTTAATTGGTTGGGTAAGGTTAATGGTTTTTATAGTAAGGCAGAAAAAGTAGCCAAACATATGGATGCATTTTTTGAAAAAGTTATTGATGAGCACATCATTGGTAGCAGATCTGATGGCCATGTTGGTGAAGGAAACAGTGATTTTGTGGACGTTTTGCTTTCAGTTCAAAAGAGGAATGCTGCTGGCTTCTCAATTGATAGAACTGCAATTAAGGGTTTGTTACTGGTAAGAATATCATTGTTTTTCCCTTTTAGTTATGTCACTTACAAACAAATTTTGTGCATTAAGTTCTATGAAATTGATTCCCAGACCAGAAGCATAAAATTCATTTTGATATGTTTGCCTCTTATGCAATAAAATTGATGTTGTTTCCATAAAATTGAGTGTATTTTTGGATGAGCGGTTAATTTGTCAAAATCACAGCGTCATCATGATTTTGTTCAAGCTCTCAAGTGTACTTTTCAACAAAATCGTGGTGGCTCACCGTAATTTGAAGCTCTCAAGTGTACTTGTCAATCCTACCCTCAATCCAAACACGCAACAGTCACTCTAACTGAATCTAAAATTTGAAGCTTCTACATCAAAATGTAATTTTTTTTATTTGAAAGTTATTGTTTGGCTCACTTTTAGGTGAATGCTTTAACGCGAATCATTTTTATGCTGTCTTACTGTTAGCCAGCATCAATTAATTTATATCAATTTCCGTCCCTATAGTACCAACATATCCTATGTATCATAAGATTTAGTGAAATTAGTAAGGTTTGGTAGCTACATGGTATAAACTAAATTGTACTTTCTCTGCAGGACATGTTTATTGCAGGTACCGATACTACCTACACAGTCCTAGAATGGGCAATGACAGAACTACTAAGACACCAAACTGTGATGCATAAATTGCAAGATGAGGTGAGAACTGTGGTTGGTAATAGAACTCATGTAACTGAAGAGGATTTGGTTAACATGAACTACTTGAAGGCTGTGATCAAAGAAATTCTTCGCCTTCACCTCCCGGTTCCCTTATTAGTCCCTCGGAAATCTATGGAAGATATCAAACTAGAGGGCTATGACATTGCAGCTGGTACACAGGTAATCGTCAATGCTTGGGCAATTGCAAGAGACTCTTCAATTTGGGAACAACCTCTAGAATTTAAACCAGAAAGGTTTATGAACAGTTCAATAGATTATAAAGGATTGGATTTTGAACTTATCCCATTTGGAGCAGGAAGGAGAGGTTGTCCTGGAGTGTTGTTTGCTCTTTCTATCAATGAATTGGTTTTAGCAAACCTTGTTCATCAATTTGATTGGAAATTGCCTGATGGAGTAGAAGGAAAGGATTTGGACATGTCTGAAACTAATGGCCTTACTTGTCGTAGAAAATACCCTCTACTTGCAGTTGCTACCAAATATGACAGAAATGAATAA

Protein sequence

>MS.gene052510.t1

MLFFTIFPLFLISLFAIIKYCHNSNNSSATKKNLPPSPPRIPLLGAGVVVSSADAAREVMKTHDSVFADRPHRKIFDILFYGSKDVASCGYGEYWKQVRSLSVLNLLSNKRVQSYRHVREEETAKMMQSIQQKNTAVNLTELCSTVTNDITCRVVLGKRYRDEGGVLPELMLEFGELLVIFFIGDYIPSLNWLGKVNGFYSKAEKVAKHMDAFFEKVIDEHIIGSRSDGHVGEGNSDFVDVLLSVQKRNAAGFSIDRTAIKGLLLDMFIAGTDTTYTVLEWAMTELLRHQTVMHKLQDEVRTVVGNRTHVTEEDLVNMNYLKAVIKEILRLHLPVPLLVPRKSMEDIKLEGYDIAAGTQVIVNAWAIARDSSIWEQPLEFKPERFMNSSIDYKGLDFELIPFGAGRRGCPGVLFALSINELVLANLVHQFDWKLPDGVEGKDLDMSETNGLTCRRKYPLLAVATKYDRNE