AlfalfaGEDB | MS.gene33768

M. sativa cultivar XinJiangDaYe / MS.gene33768

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33768.t1	XP_013457073.1	93.1	523	34	2	1	523	1	521	4.60E-279	969.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33768.t1	P37117	53.7	484	218	4	38	519	26	505	1.7e-144	514.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33768.t1	A0A072UMT0	93.1	523	34	2	1	523	1	521	3.3e-279	969.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene33768	0.850897	1.26E-60	-1.69E-46
MS.gene049171	MS.gene33768	0.900673	5.79E-78	-1.69E-46
MS.gene049173	MS.gene33768	0.842129	3.12E-58	-1.69E-46
MS.gene049217	MS.gene33768	0.867375	1.43E-65	-1.69E-46
MS.gene049222	MS.gene33768	0.89678	2.66E-76	-1.69E-46
MS.gene049232	MS.gene33768	0.879366	1.32E-69	-1.69E-46
MS.gene049285	MS.gene33768	0.899302	2.27E-77	-1.69E-46
MS.gene049320	MS.gene33768	0.898008	8.08E-77	-1.69E-46
MS.gene04939	MS.gene33768	0.800454	1.43E-48	-1.69E-46
MS.gene049396	MS.gene33768	0.843064	1.76E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene00056	MS.gene33768	PPI
MS.gene008145	MS.gene33768	PPI
MS.gene008451	MS.gene33768	PPI
MS.gene008464	MS.gene33768	PPI
MS.gene008474	MS.gene33768	PPI
MS.gene008653	MS.gene33768	PPI
MS.gene008654	MS.gene33768	PPI
MS.gene017540	MS.gene33768	PPI
MS.gene017541	MS.gene33768	PPI
MS.gene022558	MS.gene33768	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33768.t1	MTR_4g089030	93.117	523	34	2	1	523	1	521	0.0	999
MS.gene33768.t1	MTR_4g089025	80.835	527	92	5	1	523	1	522	0.0	878
MS.gene33768.t1	MTR_4g089020	79.960	504	93	3	19	522	1	496	0.0	843
MS.gene33768.t1	MTR_4g089055	77.609	527	106	6	1	523	1	519	0.0	828
MS.gene33768.t1	MTR_4g104610	60.990	505	189	5	20	521	1	500	0.0	644
MS.gene33768.t1	MTR_0022s0290	59.417	515	199	8	13	519	5	517	0.0	620
MS.gene33768.t1	MTR_4g104550	61.396	487	179	5	36	521	17	495	0.0	620
MS.gene33768.t1	MTR_4g104540	61.416	438	161	3	83	520	1	430	0.0	568
MS.gene33768.t1	MTR_3g076530	47.714	503	246	5	21	519	14	503	8.76e-167	482
MS.gene33768.t1	MTR_4g104660	44.269	506	274	5	10	512	7	507	1.41e-151	444

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33768.t1	AT3G48280	50.405	494	227	5	27	519	12	488	0.0	523
MS.gene33768.t1	AT3G48270	51.599	469	211	4	50	517	33	486	0.0	521
MS.gene33768.t1	AT3G48310	51.064	470	214	4	49	517	33	487	1.07e-178	512
MS.gene33768.t1	AT3G48290	51.915	470	210	5	49	517	34	488	5.58e-178	510
MS.gene33768.t1	AT3G48300	51.386	469	208	6	50	517	31	480	1.18e-173	499
MS.gene33768.t1	AT3G48300	51.386	469	208	6	50	517	33	482	1.27e-173	499
MS.gene33768.t1	AT3G48290	49.194	496	210	6	49	517	34	514	7.33e-172	495
MS.gene33768.t1	AT3G48320	48.310	503	241	5	16	517	3	487	2.98e-168	485
MS.gene33768.t1	AT4G13310	48.542	480	234	5	42	517	25	495	6.41e-164	474
MS.gene33768.t1	AT5G24950	46.541	477	242	5	40	513	24	490	5.09e-157	457

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Find 109 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAGAAATGAAGAT+TGG	0.467092	4.4:+23675862	None:intergenic
AAAAGATACCGTGAAGGAAG+AGG	0.525851	4.4:-23675319	MS.gene33768:CDS
AAAATAGTGAAGAAAAGCAT+AGG	0.523425	4.4:+23675886	None:intergenic
AAAGATACCGTGAAGGAAGA+GGG	0.604883	4.4:-23675318	MS.gene33768:CDS
AAATAGTGAAGAAAAGCATA+GGG	0.572409	4.4:+23675887	None:intergenic
AAATCTTGGAGTGATCTGTG+AGG	0.718248	4.4:+23675736	None:intergenic
AACAGTTCAATAGATTTCAA+AGG	0.530471	4.4:-23674206	MS.gene33768:CDS
AAGAATGATGGAATATATTA+AGG	0.256944	4.4:-23675431	MS.gene33768:CDS
AAGAGAACTTGGCAGAAAGG+TGG	0.637502	4.4:+23675933	None:intergenic
AATCTTGGAGTGATCTGTGA+GGG	0.594859	4.4:+23675737	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAGTGGCCAAACAAT+TGG	-	chr4.4:23674732-23674751	MS.gene33768:intron	30.0%
ACAAGTAATAGTCAATGCTT+GGG	-	chr4.4:23675620-23675639	MS.gene33768:CDS	30.0%
ACCTTGTTCATCAATTTGAT+TGG	-	chr4.4:23675820-23675839	MS.gene33768:CDS	30.0%
ATTTCATGTGAAAGAGAACT+TGG	+	chr4.4:23673992-23674011	None:intergenic	30.0%
CATATTTGTGAGCTAAATCT+TGG	+	chr4.4:23674192-23674211	None:intergenic	30.0%
GCACAATTCTGTTAAATTCA+AGG	+	chr4.4:23674530-23674549	None:intergenic	30.0%
GTACAGTATTATTATTTGGC+TGG	-	chr4.4:23674958-23674977	MS.gene33768:intron	30.0%
TCATGTAACTGAAGAAGATT+TGG	-	chr4.4:23675470-23675489	MS.gene33768:CDS	30.0%
TCCAATCAAATTGATGAACA+AGG	+	chr4.4:23675824-23675843	None:intergenic	30.0%
TTACCAAGTATAGGATATCT+TGG	+	chr4.4:23674133-23674152	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	23673974	23675959	23673974	ID=MS.gene33768
chr4.4	mRNA	23673974	23675959	23673974	ID=MS.gene33768.t1;Parent=MS.gene33768
chr4.4	exon	23675006	23675959	23675006	ID=MS.gene33768.t1.exon1;Parent=MS.gene33768.t1
chr4.4	CDS	23675006	23675959	23675006	ID=cds.MS.gene33768.t1;Parent=MS.gene33768.t1
chr4.4	exon	23673974	23674591	23673974	ID=MS.gene33768.t1.exon2;Parent=MS.gene33768.t1
chr4.4	CDS	23673974	23674591	23673974	ID=cds.MS.gene33768.t1;Parent=MS.gene33768.t1

Gene Sequence

>MS.gene33768

ATGTCCACCTTTCTGCCAAGTTCTCTTTCACATGAAATCTTCTCTTCATTCCCTATGCTTTTCTTCACTATTTTACCAATCTTCATTTCTCTTCTTTTCATCATCAAATGGTATTCCAACAATTCTGCCACCCAAAAATACTTACCTCCTTCACCTCCAAGATATCCTATACTTGGTAATCTTCACCAAATTGGTGTGTCCCCTCACAGATCACTCCAAGATTTAGCTCACAAATATGGCCCTTTAATGATTCTTTCTTTTGGGAAGGTTCCAGTACTTGTTGTTTCCTCTGCTGATGCAGCAAGAAAAGTAATGAAAACTCATGACTTAGTCTTCTCTGATAGGCCACAACTTAAAATCTTTGATATCCTTTTATACAGTTTCAAAGATGTAGCAAGTTGTGCATATGGTGAGTATTGGAGACAAGTAAGGAGTCTAAGTGTGTTACACCTTCTAAGTAACAAAAGAGTTCGATCTTACCGTCGTGTTAGAGAGGAAGAAACTTTAAGAATGATGGAATATATTAAGGAGGTTTCTTTTTCTAACTCGTCACCCTTGAATTTAACAGAATTGTGCTCTACAATTACTAATGATATAGTATGCAGGGTGGCTCTGGGAAAAAGATACCGTGAAGGAAGAGGGATTAAATTTCAGGAAGTGTTATTGGAGTTTGGGGAGTTATTAGGCACTGTATGTATAGGAGACTATATACCTTGGCTTGATTGGTTGGGAAAAATTAATGGTTTTTATAGCAAAGCAAAAAAAGTGGCCAAACAATTGGATGAATTTTTTGAGGAAGTAATTGAGGAGCACATTAGTGGTGGTAGATCTAATGGAGATGTTGGTGCTGAAAATGAAGAGCATAGTGATTTTGTGGATGTTTTGCTTTCGCTTCAAAAGACCAATGCTATGGGATTCCCAATTGATAGAACTTCAATCAAGGCTTTGATACTGGTAAGTAACAATATTCATTCACATTTTACAGTACAGTATTATTATTTGGCTGGGACTGTTTTTCTGAGGTGTCTTCCTTTCTACTATATATTTTTTTGTGCATATATATAAATTACTGTATATGTCGCTCTACCATATTCTAGAATTTGCTGCTCAACATTCTAACTTTTGTAAATTTCTGATACATAATTTGTTTATATATTTACTTTGTGGAATTACTGAGGCTTGGTAGCTGTTACAACTATAAGGTGTTAGTTAAATTTTGATACATGGTCAGATTACAATTTAATAGCATTATGATTTTAGAAGTAGTTACAATCTTGTCAAAAACAAAAGCGGTTAAGATTTAAGTCAAGTATTTTTAATAATGTGACGATCACAATTGATTGACACTTAATATTTTCTCGTATGTAGGACATGTTTGCTGCAGGTACTGATGCTACCTACACAGTTCTAGAATGGGCAATGACAGAACTTTTAAGAGACCAAACTGTGATGCATAAATTGCAAGATGAGGTGAGAACTGTGGTTGGTAACAGAACTCATGTAACTGAAGAAGATTTGGTTAACATGAACTACTTGAAAGCTGTGATCAAAGAAACTCTTCGCCTCCATGCACCAGTTCCGTTGTTAGTCCCTCGAAAATCAATGGAAGATATCAAAATAAATGGCTATGACATTGCAGCTGGTACACAAGTAATAGTCAATGCTTGGGCTATTTCTAGAGATCCTTCAATTTGGGAAGAACCTCTAGAGTTTAAACCAGAAAGGTTTATGAACAGTTCAATAGATTTCAAAGGATTGGATTTTGAACTTATTCCATTTGGAGCAGGAAGGAGAGGTTGTCCTGGAGTGTTGTTTGCTGTTGCTGTGAATGAATTGGTGCTAGCAAACCTTGTTCATCAATTTGATTGGAAATTGCCTGATGGAGTTGCTGAGAAGGATTTGGACATGTCTGAAACTAATGGCCTTAGTTGCCATAGAAAATACCCTCTCCTTGCAGTAGCTACTAAATATGAGAAAAATGAATGA

Protein sequence

>MS.gene33768.t1

MSTFLPSSLSHEIFSSFPMLFFTILPIFISLLFIIKWYSNNSATQKYLPPSPPRYPILGNLHQIGVSPHRSLQDLAHKYGPLMILSFGKVPVLVVSSADAARKVMKTHDLVFSDRPQLKIFDILLYSFKDVASCAYGEYWRQVRSLSVLHLLSNKRVRSYRRVREEETLRMMEYIKEVSFSNSSPLNLTELCSTITNDIVCRVALGKRYREGRGIKFQEVLLEFGELLGTVCIGDYIPWLDWLGKINGFYSKAKKVAKQLDEFFEEVIEEHISGGRSNGDVGAENEEHSDFVDVLLSLQKTNAMGFPIDRTSIKALILDMFAAGTDATYTVLEWAMTELLRDQTVMHKLQDEVRTVVGNRTHVTEEDLVNMNYLKAVIKETLRLHAPVPLLVPRKSMEDIKINGYDIAAGTQVIVNAWAISRDPSIWEEPLEFKPERFMNSSIDFKGLDFELIPFGAGRRGCPGVLFAVAVNELVLANLVHQFDWKLPDGVAEKDLDMSETNGLSCHRKYPLLAVATKYEKNE