Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026236.t1 | KEH40903.1 | 95.5 | 1415 | 41 | 1 | 1 | 1392 | 1 | 1415 | 0.00E+00 | 2608.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026236.t1 | A4L9P7 | 24.3 | 1244 | 799 | 34 | 76 | 1271 | 78 | 1226 | 4.0e-68 | 261.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026236.t1 | A0A072VHM7 | 95.5 | 1415 | 41 | 1 | 1 | 1392 | 1 | 1415 | 0.0e+00 | 2608.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026236 | MS.gene043645 | PPI |
| MS.gene026236 | MS.gene77911 | PPI |
| MS.gene026236 | MS.gene045232 | PPI |
| MS.gene026236 | MS.gene035828 | PPI |
| MS.gene026236 | MS.gene46640 | PPI |
| MS.gene026236 | MS.gene73093 | PPI |
| MS.gene026236 | MS.gene95527 | PPI |
| MS.gene026236 | MS.gene035826 | PPI |
| MS.gene026236 | MS.gene035825 | PPI |
| MS.gene026236 | MS.gene045235 | PPI |
| MS.gene026236 | MS.gene043643 | PPI |
| MS.gene026236 | MS.gene064353 | PPI |
| MS.gene026236 | MS.gene045233 | PPI |
| MS.gene026236 | MS.gene99872 | PPI |
| MS.gene026236 | MS.gene043595 | PPI |
| MS.gene026236 | MS.gene79130 | PPI |
| MS.gene026236 | MS.gene064351 | PPI |
| MS.gene026236 | MS.gene92710 | PPI |
| MS.gene026236 | MS.gene043593 | PPI |
| MS.gene026236 | MS.gene067033 | PPI |
| MS.gene026236 | MS.gene75575 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026236.t1 | MTR_1g037280 | 95.477 | 1415 | 41 | 1 | 1 | 1392 | 1 | 1415 | 0.0 | 2757 |
| MS.gene026236.t1 | MTR_1g037280 | 95.406 | 1415 | 41 | 2 | 1 | 1392 | 1 | 1414 | 0.0 | 2751 |
| MS.gene026236.t1 | MTR_1g037280 | 94.996 | 1399 | 42 | 2 | 1 | 1371 | 1 | 1399 | 0.0 | 2706 |
| MS.gene026236.t1 | MTR_4g134080 | 34.099 | 1176 | 670 | 26 | 6 | 1161 | 14 | 1104 | 0.0 | 607 |
| MS.gene026236.t1 | MTR_4g134080 | 34.099 | 1176 | 670 | 26 | 6 | 1161 | 14 | 1104 | 0.0 | 606 |
| MS.gene026236.t1 | MTR_4g134080 | 34.099 | 1176 | 670 | 26 | 6 | 1161 | 14 | 1104 | 0.0 | 606 |
| MS.gene026236.t1 | MTR_2g027090 | 33.728 | 1183 | 677 | 28 | 9 | 1169 | 9 | 1106 | 1.10e-177 | 573 |
| MS.gene026236.t1 | MTR_1g014270 | 38.012 | 171 | 106 | 0 | 61 | 231 | 53 | 223 | 6.07e-33 | 139 |
| MS.gene026236.t1 | MTR_1g014300 | 32.367 | 207 | 130 | 1 | 25 | 231 | 39 | 235 | 1.80e-32 | 127 |
| MS.gene026236.t1 | MTR_3g106100 | 37.059 | 170 | 107 | 0 | 62 | 231 | 54 | 223 | 1.32e-31 | 134 |
| MS.gene026236.t1 | MTR_4g006875 | 35.583 | 163 | 105 | 0 | 69 | 231 | 26 | 188 | 1.10e-28 | 124 |
| MS.gene026236.t1 | MTR_4g006875 | 31.878 | 229 | 144 | 2 | 4 | 231 | 9 | 226 | 1.13e-28 | 125 |
| MS.gene026236.t1 | MTR_4g030130 | 29.630 | 135 | 83 | 2 | 2 | 135 | 13 | 136 | 1.46e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026236.t1 | AT1G77600 | 43.157 | 1191 | 567 | 15 | 1 | 1158 | 1 | 1114 | 0.0 | 898 |
| MS.gene026236.t1 | AT1G77600 | 43.157 | 1191 | 567 | 15 | 1 | 1158 | 1 | 1114 | 0.0 | 898 |
| MS.gene026236.t1 | AT1G77600 | 42.656 | 1205 | 567 | 16 | 1 | 1158 | 1 | 1128 | 0.0 | 887 |
| MS.gene026236.t1 | AT5G47690 | 33.967 | 1157 | 645 | 22 | 23 | 1151 | 22 | 1087 | 0.0 | 598 |
| MS.gene026236.t1 | AT5G47690 | 33.967 | 1157 | 645 | 22 | 23 | 1151 | 22 | 1087 | 0.0 | 598 |
| MS.gene026236.t1 | AT5G47690 | 33.967 | 1157 | 645 | 22 | 23 | 1151 | 22 | 1087 | 0.0 | 598 |
| MS.gene026236.t1 | AT5G47690 | 33.521 | 1068 | 607 | 25 | 109 | 1151 | 1 | 990 | 1.65e-154 | 506 |
| MS.gene026236.t1 | AT4G31880 | 40.116 | 172 | 102 | 1 | 60 | 231 | 52 | 222 | 7.77e-38 | 154 |
| MS.gene026236.t1 | AT4G31880 | 40.116 | 172 | 102 | 1 | 60 | 231 | 52 | 222 | 7.81e-38 | 154 |
| MS.gene026236.t1 | AT1G80810 | 35.683 | 227 | 135 | 3 | 7 | 233 | 12 | 227 | 3.68e-33 | 138 |
| MS.gene026236.t1 | AT1G15940 | 39.645 | 169 | 102 | 0 | 62 | 230 | 58 | 226 | 6.05e-33 | 139 |
| MS.gene026236.t1 | AT1G80810 | 39.884 | 173 | 104 | 0 | 60 | 232 | 2 | 174 | 9.80e-33 | 137 |
| MS.gene026236.t1 | AT1G80810 | 39.884 | 173 | 104 | 0 | 60 | 232 | 2 | 174 | 1.05e-32 | 137 |
| MS.gene026236.t1 | AT1G80810 | 39.884 | 173 | 104 | 0 | 60 | 232 | 2 | 174 | 1.05e-32 | 137 |
| MS.gene026236.t1 | AT1G80810 | 35.841 | 226 | 134 | 3 | 7 | 232 | 12 | 226 | 1.06e-32 | 138 |
Find 228 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGATGACGGTGGATTTA+AGG | 0.152329 | 1.1:+21822209 | MS.gene026236:CDS |
| CTTACTGCAAATATTCATTT+TGG | 0.158706 | 1.1:-21832944 | None:intergenic |
| AAGAGATGCCACTTGTTTAT+TGG | 0.186396 | 1.1:+21833179 | MS.gene026236:CDS |
| AATAGCAGAGACTGCAAATT+TGG | 0.210284 | 1.1:-21824178 | None:intergenic |
| GTCTATGTGGCGAATCCTTT+TGG | 0.212959 | 1.1:+21818699 | MS.gene026236:CDS |
| AAAGGCACTGAATACTATTT+TGG | 0.215599 | 1.1:+21819496 | MS.gene026236:CDS |
| TAAACAAGTGGCATCTCTTT+TGG | 0.230720 | 1.1:-21833175 | None:intergenic |
| TATTGGTTTGTTTGCGGATC+TGG | 0.235562 | 1.1:+21817164 | MS.gene026236:CDS |
| CAATTACTTGAATCATCTTT+TGG | 0.252795 | 1.1:-21824884 | None:intergenic |
| GTTTGATCAGATGGAGTATT+TGG | 0.256294 | 1.1:+21825493 | MS.gene026236:intron |
| TCAATCAGCTTGTCATTTAC+AGG | 0.257752 | 1.1:-21822996 | None:intergenic |
| GTATCTTTGAAGTTGTTTCT+AGG | 0.258326 | 1.1:-21833249 | None:intergenic |
| CAATGCTCTGTTTCAGATCT+TGG | 0.264682 | 1.1:+21825306 | MS.gene026236:CDS |
| CATACGAAGCAGAACATTAA+TGG | 0.265409 | 1.1:+21827548 | MS.gene026236:CDS |
| CAAGTGCCTCCGTCTGATTC+TGG | 0.266339 | 1.1:+21833066 | MS.gene026236:CDS |
| TGTTTATCAGATGGAGTCTT+TGG | 0.268530 | 1.1:+21825013 | MS.gene026236:intron |
| GGACAACGATGTTCCCTCTT+TGG | 0.272284 | 1.1:-21835349 | None:intergenic |
| TGAAAGACTTAGGGATAAAA+AGG | 0.284745 | 1.1:+21819046 | MS.gene026236:CDS |
| GAATGAGATGATAAACTATT+TGG | 0.286082 | 1.1:+21819608 | MS.gene026236:CDS |
| GGCAATACGGAAGAAATTAA+AGG | 0.286256 | 1.1:+21819629 | MS.gene026236:CDS |
| TCGGTTAAAAGCTGTTAATT+TGG | 0.290729 | 1.1:+21818545 | MS.gene026236:CDS |
| ATGGTGAAGCGGAAAATTTC+TGG | 0.291898 | 1.1:-21829983 | None:intergenic |
| GATGTATTTAAACTCATTAT+TGG | 0.292432 | 1.1:+21817147 | MS.gene026236:CDS |
| CCCAACCATTATGCGAAATC+TGG | 0.294391 | 1.1:+21824794 | MS.gene026236:CDS |
| ACATATGGCAGAGTTTATTA+AGG | 0.299383 | 1.1:+21831916 | MS.gene026236:CDS |
| CAAGTACTTGAATAATCTTC+TGG | 0.303160 | 1.1:-21825362 | None:intergenic |
| AGCTGAACACCCTAGTTTGC+AGG | 0.303496 | 1.1:+21818220 | MS.gene026236:CDS |
| ACAAGTTATTATCTTTGATT+TGG | 0.303962 | 1.1:-21820961 | None:intergenic |
| CAAAGATACATGTGGCTCTA+AGG | 0.312039 | 1.1:+21833263 | MS.gene026236:CDS |
| CTCAAACTCATCTCCGATAT+CGG | 0.315949 | 1.1:+21815631 | MS.gene026236:CDS |
| TAGAAATAACAGCGGTTTAA+TGG | 0.317091 | 1.1:+21835498 | MS.gene026236:CDS |
| TCAAGAATGCTACGGGAAAA+TGG | 0.318391 | 1.1:+21827587 | MS.gene026236:CDS |
| ACCTGAGCAGCTTCTGTTGA+AGG | 0.332104 | 1.1:+21818912 | MS.gene026236:intron |
| CTTCTTTCTCCTGCAGGCAT+TGG | 0.334133 | 1.1:+21832202 | MS.gene026236:CDS |
| TTACAAACTACATACTTTGA+TGG | 0.335176 | 1.1:-21821035 | None:intergenic |
| CAGATCCCAGAGCATGGAAT+TGG | 0.335494 | 1.1:+21819379 | MS.gene026236:intron |
| GTTTGTTCCCTTGAAACTAA+TGG | 0.338281 | 1.1:+21819013 | MS.gene026236:CDS |
| TTCCTCGCTCTCATTCAAAA+TGG | 0.348716 | 1.1:-21817748 | None:intergenic |
| AAACTTGAAAGATAATTTCA+TGG | 0.351251 | 1.1:-21818302 | None:intergenic |
| GAAGAACCAACTTTCACAAT+TGG | 0.354302 | 1.1:+21821007 | MS.gene026236:CDS |
| CTGTTCGCGGCTGAGGAGAC+TGG | 0.364886 | 1.1:-21816816 | None:intergenic |
| CGATATTTCTTCAATTAAGC+TGG | 0.368701 | 1.1:-21818361 | None:intergenic |
| GACAGAGACGCCGTGGGCTG+CGG | 0.369037 | 1.1:+21818264 | MS.gene026236:CDS |
| CTTAAATCCACCGTCATCAT+TGG | 0.371498 | 1.1:-21822208 | None:intergenic |
| ACCTGCTCGCAAGGGTCAAC+AGG | 0.371549 | 1.1:+21832909 | MS.gene026236:CDS |
| GCAACCCAGATTTCGCATAA+TGG | 0.372429 | 1.1:-21824799 | None:intergenic |
| ATAAGGATTGCAAGGAGTTC+AGG | 0.374450 | 1.1:+21819278 | MS.gene026236:CDS |
| AGGAGCATAAACTACCTATC+AGG | 0.377054 | 1.1:+21831391 | MS.gene026236:CDS |
| TTCAACCAGAGAACCCTTAC+AGG | 0.379583 | 1.1:-21833130 | None:intergenic |
| TTTGATGCTTTGCTATGATA+AGG | 0.381462 | 1.1:+21819261 | MS.gene026236:CDS |
| CAGCTTAATTGAAGAAATAT+CGG | 0.383625 | 1.1:+21818362 | MS.gene026236:CDS |
| CTGCACAAGCTGGTTGAAAT+TGG | 0.386106 | 1.1:+21832425 | MS.gene026236:CDS |
| ATCCAATTTGTAGGCTGATC+AGG | 0.387190 | 1.1:+21818515 | MS.gene026236:intron |
| TCTCTACTTGGGAAACTGTC+TGG | 0.389430 | 1.1:-21832988 | None:intergenic |
| TCCACTCTTCTTTCTCCTGC+AGG | 0.391465 | 1.1:+21832196 | MS.gene026236:CDS |
| GTATTTGTTATTTCTCTACT+TGG | 0.391575 | 1.1:-21833000 | None:intergenic |
| CGACAACCTTCTTCTGTTGA+AGG | 0.394170 | 1.1:+21831962 | MS.gene026236:CDS |
| GATGGACTTCTTGTAAAGAT+TGG | 0.395454 | 1.1:+21822084 | MS.gene026236:CDS |
| CTAGAGAGAATGTGCTTACA+TGG | 0.396271 | 1.1:+21824141 | MS.gene026236:CDS |
| TGATTACCCTGCATATGTTT+TGG | 0.397914 | 1.1:+21831994 | MS.gene026236:CDS |
| AAGTGTATGCTGACATTTGT+AGG | 0.399605 | 1.1:+21832077 | MS.gene026236:CDS |
| CACTGAATTATTTCGAATCA+AGG | 0.401173 | 1.1:+21816963 | MS.gene026236:CDS |
| CAAGAACCAATTCCATGCTC+TGG | 0.401194 | 1.1:-21819385 | None:intergenic |
| CCCAGAGATTGCAAAATTGT+TGG | 0.404532 | 1.1:-21825273 | None:intergenic |
| CTGATAGATGCTGTGGTTTG+TGG | 0.404803 | 1.1:+21816886 | MS.gene026236:CDS |
| AGCATGTCAAAGACTCTACT+TGG | 0.410443 | 1.1:-21832732 | None:intergenic |
| GTGGCGGTCTTCTTCAGCAT+GGG | 0.414521 | 1.1:+21816905 | MS.gene026236:CDS |
| CTCCGAGCCTTTCAGCATTG+AGG | 0.415607 | 1.1:-21822940 | None:intergenic |
| CAGCAAATCTTGTCAATTGA+AGG | 0.416739 | 1.1:+21825556 | MS.gene026236:CDS |
| TCCGAGCCTTTCAGCATTGA+GGG | 0.420202 | 1.1:-21822939 | None:intergenic |
| TATCTTTGAAGTTGTTTCTA+GGG | 0.420430 | 1.1:-21833248 | None:intergenic |
| TTGTCTTCAAAAGGAGGTTC+AGG | 0.420758 | 1.1:-21816988 | None:intergenic |
| CTGAAGTCTCTGAAAGACTT+AGG | 0.422787 | 1.1:+21819036 | MS.gene026236:CDS |
| CTGGATCAGTTGAAAGAAAC+CGG | 0.422819 | 1.1:+21833085 | MS.gene026236:CDS |
| AAAATGGTGGTTCTGTTGAT+AGG | 0.423982 | 1.1:+21827603 | MS.gene026236:CDS |
| ACCCCTCAGCGCAGAAAACT+TGG | 0.425590 | 1.1:+21825065 | MS.gene026236:CDS |
| TTTCAGTCCTCTTCATGAAA+AGG | 0.425682 | 1.1:+21819478 | MS.gene026236:CDS |
| GACTTCAGCCATTAGTTTCA+AGG | 0.429451 | 1.1:-21819021 | None:intergenic |
| AGGCTGATCAGGTTGATATT+CGG | 0.431025 | 1.1:+21818526 | MS.gene026236:intron |
| AGCGAGTTGAGTTCCGATAT+CGG | 0.431457 | 1.1:-21815644 | None:intergenic |
| TGTGACCTGTAAGGGTTCTC+TGG | 0.434003 | 1.1:+21833125 | MS.gene026236:CDS |
| TAATGATTCTGTGACCTGTA+AGG | 0.439134 | 1.1:+21833116 | MS.gene026236:CDS |
| AAAGTGTTGCTTATTAATGC+TGG | 0.439806 | 1.1:+21817248 | MS.gene026236:CDS |
| CCAGAGATTGCAAAATTGTT+GGG | 0.444162 | 1.1:-21825272 | None:intergenic |
| ATGTTCCCTCTTTGGCTGCT+AGG | 0.444275 | 1.1:-21835341 | None:intergenic |
| CTCAAATGCTTGTCTTCAAA+AGG | 0.444732 | 1.1:-21816997 | None:intergenic |
| TCTTTGGCTGTTCGCGGCTG+AGG | 0.447594 | 1.1:-21816823 | None:intergenic |
| AAGCAAACTACTGCTACAAC+AGG | 0.447619 | 1.1:+21835315 | MS.gene026236:CDS |
| TCTTCTTCAGCATGGGGATA+AGG | 0.449335 | 1.1:+21816912 | MS.gene026236:CDS |
| AAGAATTAGTGCTTTACAAT+GGG | 0.450594 | 1.1:+21818668 | MS.gene026236:CDS |
| TTAAAAGCTGTTAATTTGGT+GGG | 0.450596 | 1.1:+21818549 | MS.gene026236:CDS |
| GGTCATCAAAGTCAAATAAT+CGG | 0.453439 | 1.1:-21818935 | None:intergenic |
| GCTGAAAGGCTCGGAGAAGC+TGG | 0.453836 | 1.1:+21822947 | MS.gene026236:CDS |
| AAAATATATCTTCAGAGAAA+AGG | 0.454729 | 1.1:+21833037 | MS.gene026236:CDS |
| TCCTGTTGACCCTTGCGAGC+AGG | 0.456837 | 1.1:-21832910 | None:intergenic |
| CATTAATGTTCTGCTTCGTA+TGG | 0.458692 | 1.1:-21827547 | None:intergenic |
| GCAGAACATTAATGGACTCT+TGG | 0.460649 | 1.1:+21827556 | MS.gene026236:CDS |
| ACTCATTATTGGTTTGTTTG+CGG | 0.461013 | 1.1:+21817158 | MS.gene026236:CDS |
| CTCGGAGAAGCTGGTTCAAA+TGG | 0.463737 | 1.1:+21822956 | MS.gene026236:CDS |
| AGTTGTCTCAAAATTATTTG+AGG | 0.464264 | 1.1:+21824224 | MS.gene026236:CDS |
| TCAGGTGTCTGTTAGGAAGA+AGG | 0.466388 | 1.1:+21819138 | MS.gene026236:intron |
| CAAAGCATCAAAACTTTACA+TGG | 0.467743 | 1.1:-21819250 | None:intergenic |
| TCAAGTGATTCTCTCCCAAA+AGG | 0.468765 | 1.1:-21818714 | None:intergenic |
| TGTGGCGGTCTTCTTCAGCA+TGG | 0.469195 | 1.1:+21816904 | MS.gene026236:CDS |
| AAAGCACAAGCAAACCTGAT+AGG | 0.470813 | 1.1:-21831405 | None:intergenic |
| GTTTCAAGGGAACAAACATC+AGG | 0.472840 | 1.1:-21819007 | None:intergenic |
| ATTCTAGAACTATAAACATA+TGG | 0.473223 | 1.1:+21831901 | MS.gene026236:intron |
| CCCAGATTTCGCATAATGGT+TGG | 0.473713 | 1.1:-21824795 | None:intergenic |
| CCAGATTTCGCATAATGGTT+GGG | 0.477679 | 1.1:-21824794 | None:intergenic |
| ACAGAGACGCCGTGGGCTGC+GGG | 0.477918 | 1.1:+21818265 | MS.gene026236:CDS |
| CAGAAAACTTGGTCAATTGA+AGG | 0.480101 | 1.1:+21825076 | MS.gene026236:CDS |
| GTTTGTCCAATTGTGAAAGT+TGG | 0.481602 | 1.1:-21821013 | None:intergenic |
| TTTACTTCTTTGGCTGTTCG+CGG | 0.482036 | 1.1:-21816829 | None:intergenic |
| AAGTACACCAAAACATATGC+AGG | 0.482688 | 1.1:-21832001 | None:intergenic |
| ATTCGCCACATAGACAGCTT+TGG | 0.483791 | 1.1:-21818691 | None:intergenic |
| TAAAACTCAGAAATTGTTGA+AGG | 0.485738 | 1.1:+21831371 | MS.gene026236:CDS |
| TTCGTATGGTTCCCTTGGTA+AGG | 0.485766 | 1.1:-21827533 | None:intergenic |
| TTGACGATGAAGTCTTTGTT+CGG | 0.485867 | 1.1:-21815679 | None:intergenic |
| TGAAGTCTCTGAAAGACTTA+GGG | 0.486997 | 1.1:+21819037 | MS.gene026236:CDS |
| CCCCTCAATGCTGAAAGGCT+CGG | 0.487251 | 1.1:+21822938 | MS.gene026236:CDS |
| CTCTCGAACCTATGCACCTA+AGG | 0.487804 | 1.1:+21832770 | MS.gene026236:CDS |
| TTTCTCCTAACAAAAGAAGA+AGG | 0.488174 | 1.1:-21831339 | None:intergenic |
| TCTGCTTCGTATGGTTCCCT+TGG | 0.491114 | 1.1:-21827538 | None:intergenic |
| GAAGGCCTCACAGAAGTTGA+TGG | 0.491941 | 1.1:+21819156 | MS.gene026236:CDS |
| GACGATCTGACATCCTTGTA+TGG | 0.492020 | 1.1:+21825041 | MS.gene026236:CDS |
| TGATTTGGTTTAACTTGTGA+AGG | 0.492234 | 1.1:-21820946 | None:intergenic |
| TTCTTCTGTAAATCTTCTGC+TGG | 0.497573 | 1.1:+21822233 | MS.gene026236:CDS |
| CTGAGAGAAGAATGCTCACT+AGG | 0.498678 | 1.1:-21835285 | None:intergenic |
| ACTTCATAAACCTGCTCGCA+AGG | 0.499606 | 1.1:+21832900 | MS.gene026236:CDS |
| GCGCTGAGGGGTTCCATACA+AGG | 0.500389 | 1.1:-21825054 | None:intergenic |
| ATTGCTCCTTCAACAGAAGA+AGG | 0.501511 | 1.1:-21831968 | None:intergenic |
| TATTTGTTATTTCTCTACTT+GGG | 0.504147 | 1.1:-21832999 | None:intergenic |
| ACTTTAAATGCATTAAGTCC+CGG | 0.504333 | 1.1:+21832455 | MS.gene026236:CDS |
| TTGTGATACAGAAATTTCTC+CGG | 0.506491 | 1.1:-21832474 | None:intergenic |
| GTTAAAAGCTGTTAATTTGG+TGG | 0.508129 | 1.1:+21818548 | MS.gene026236:CDS |
| TCCCGAGCATCTTTCTGTTG+CGG | 0.509417 | 1.1:+21819421 | MS.gene026236:CDS |
| TCAGTAATGCTGATTGTCAC+CGG | 0.509657 | 1.1:+21832231 | MS.gene026236:CDS |
| TTCTTTAAGCCCGCAGCCCA+CGG | 0.512103 | 1.1:-21818274 | None:intergenic |
| GATATTTCTTCAATTAAGCT+GGG | 0.517070 | 1.1:-21818360 | None:intergenic |
| TGTGATACAGAAATTTCTCC+GGG | 0.519497 | 1.1:-21832473 | None:intergenic |
| CGACCGCCTGCATCCTCACT+CGG | 0.523449 | 1.1:-21818956 | None:intergenic |
| TGATAAACTATTTGGCAATA+CGG | 0.526283 | 1.1:+21819616 | MS.gene026236:CDS |
| TCCGCAACAGAAAGATGCTC+GGG | 0.527111 | 1.1:-21819422 | None:intergenic |
| GAAATAATTCAGTGACGCAA+AGG | 0.528935 | 1.1:-21816954 | None:intergenic |
| TTTATTCTTTCAATAGACAA+TGG | 0.529012 | 1.1:+21824766 | MS.gene026236:CDS |
| AATGATTCTGTGACCTGTAA+GGG | 0.529595 | 1.1:+21833117 | MS.gene026236:CDS |
| CCAACCATTATGCGAAATCT+GGG | 0.532326 | 1.1:+21824795 | MS.gene026236:CDS |
| GTAACGTTTCTTTCAATCTG+AGG | 0.534340 | 1.1:+21823039 | MS.gene026236:CDS |
| CAGAATCATTAGATGAAAGC+CGG | 0.534379 | 1.1:-21833104 | None:intergenic |
| TAAGAATTAGTGCTTTACAA+TGG | 0.534544 | 1.1:+21818667 | MS.gene026236:CDS |
| ATGACTGCAAGAAGCATATG+AGG | 0.537120 | 1.1:-21818336 | None:intergenic |
| TTCCGCAACAGAAAGATGCT+CGG | 0.542585 | 1.1:-21819423 | None:intergenic |
| TCTTCGTCTTGCTAAGAAGT+GGG | 0.543407 | 1.1:+21829946 | MS.gene026236:CDS |
| ACTTCAGCCATTAGTTTCAA+GGG | 0.543546 | 1.1:-21819020 | None:intergenic |
| CTGTGCATCAACAGAATCCT+CGG | 0.544516 | 1.1:-21832312 | None:intergenic |
| GATTATCTTTCCAATGATGA+CGG | 0.544905 | 1.1:+21822198 | MS.gene026236:CDS |
| AAATAATTCAGTGACGCAAA+GGG | 0.548105 | 1.1:-21816953 | None:intergenic |
| AAGAACCAATTCCATGCTCT+GGG | 0.548415 | 1.1:-21819384 | None:intergenic |
| GAAGCTGGTTCAAATGGTGT+TGG | 0.548698 | 1.1:+21822962 | MS.gene026236:CDS |
| TAAAAGCTGTTAATTTGGTG+GGG | 0.550474 | 1.1:+21818550 | MS.gene026236:CDS |
| CAAATATACCTTAGGTGCAT+AGG | 0.550768 | 1.1:-21832778 | None:intergenic |
| TGATATCAACCAATGCCTGC+AGG | 0.551132 | 1.1:-21832211 | None:intergenic |
| TGTGTAGGCACGATTTCCAC+TGG | 0.553949 | 1.1:+21834441 | MS.gene026236:intron |
| TTCTTCGTCTTGCTAAGAAG+TGG | 0.555741 | 1.1:+21829945 | MS.gene026236:CDS |
| TACTGTAAGAAATGTTGTGA+AGG | 0.558571 | 1.1:+21819193 | MS.gene026236:CDS |
| TATTTGCAGTAAGCTCGACT+TGG | 0.560768 | 1.1:+21832954 | MS.gene026236:CDS |
| AGTTGATAAGAAGCACAAGT+TGG | 0.564113 | 1.1:-21818159 | None:intergenic |
| CGTTGAACATCTCGAGAACA+AGG | 0.565812 | 1.1:-21817287 | None:intergenic |
| TGATGACCGAGTGAGGATGC+AGG | 0.565959 | 1.1:+21818950 | MS.gene026236:CDS |
| TTGCGGAAAGGACAAAGCAC+TGG | 0.567584 | 1.1:+21819438 | MS.gene026236:CDS |
| TTGCTATGATAAGGATTGCA+AGG | 0.568868 | 1.1:+21819270 | MS.gene026236:CDS |
| GAAGGCAGCAAAATTTGTCG+TGG | 0.573201 | 1.1:-21832500 | None:intergenic |
| AATTAGTACTTGTGCGCATG+AGG | 0.574053 | 1.1:+21818194 | MS.gene026236:CDS |
| TGTGTGCAGTGAAAACGATA+AGG | 0.574858 | 1.1:+21829892 | MS.gene026236:intron |
| CTTCACCATGTTGATTGCAA+AGG | 0.575229 | 1.1:+21829997 | MS.gene026236:CDS |
| AGCATCTTTCTGTTGCGGAA+AGG | 0.576447 | 1.1:+21819426 | MS.gene026236:CDS |
| TGGCGGTCTTCTTCAGCATG+GGG | 0.578280 | 1.1:+21816906 | MS.gene026236:CDS |
| AAGGCAGCAAAATTTGTCGT+GGG | 0.578769 | 1.1:-21832499 | None:intergenic |
| CAGTAATGCTGATTGTCACC+GGG | 0.583107 | 1.1:+21832232 | MS.gene026236:CDS |
| ATTGAGATTATAGCGATGGC+AGG | 0.584614 | 1.1:+21823014 | MS.gene026236:CDS |
| AAATGCTTGTCTTCAAAAGG+AGG | 0.585800 | 1.1:-21816994 | None:intergenic |
| CCGAGCCTTTCAGCATTGAG+GGG | 0.585990 | 1.1:-21822938 | None:intergenic |
| AGCTGAAACAGAGCATTGTA+CGG | 0.587266 | 1.1:-21824823 | None:intergenic |
| GGATGCCTAGCAGCCAAAGA+GGG | 0.591116 | 1.1:+21835336 | MS.gene026236:CDS |
| CAGCATCATTAACAAGCTCC+CGG | 0.592343 | 1.1:-21832250 | None:intergenic |
| GAAATGTTGTGAAGGAAGCA+TGG | 0.592659 | 1.1:+21819201 | MS.gene026236:CDS |
| GTTTGAACTGCAAATATCAC+AGG | 0.593650 | 1.1:-21818985 | None:intergenic |
| GAATTTCAGATCCCAGAGCA+TGG | 0.595894 | 1.1:+21819373 | MS.gene026236:intron |
| TATCTTTCCAATGATGACGG+TGG | 0.597073 | 1.1:+21822201 | MS.gene026236:CDS |
| AACTGAATGTTCAGAACTCG+AGG | 0.602101 | 1.1:-21824205 | None:intergenic |
| GCTGATTGAGATTATAGCGA+TGG | 0.603646 | 1.1:+21823010 | MS.gene026236:CDS |
| TCAAGCAATTAGAAAAGCCG+AGG | 0.611545 | 1.1:+21832295 | MS.gene026236:CDS |
| TATTTATGACAGAGACGCCG+TGG | 0.613388 | 1.1:+21818257 | MS.gene026236:CDS |
| GGTTATCATAATAGAAGACA+TGG | 0.614977 | 1.1:-21817727 | None:intergenic |
| TTGCAATCAACATGGTGAAG+CGG | 0.624952 | 1.1:-21829994 | None:intergenic |
| AGCATTCTCCAATAAACAAG+TGG | 0.626337 | 1.1:-21833187 | None:intergenic |
| AGGATGCCTAGCAGCCAAAG+AGG | 0.626376 | 1.1:+21835335 | MS.gene026236:CDS |
| CTGAGAGCATTGATGATCTG+AGG | 0.628017 | 1.1:+21831442 | MS.gene026236:CDS |
| ATGGGCCAAAGCTGTCTATG+TGG | 0.634153 | 1.1:+21818686 | MS.gene026236:CDS |
| AATGCAGAAGCTGCACAAGC+TGG | 0.634189 | 1.1:+21832415 | MS.gene026236:intron |
| AGGCAGCAAAATTTGTCGTG+GGG | 0.635854 | 1.1:-21832498 | None:intergenic |
| GGTTAAAGTATTGGATACTG+TGG | 0.641308 | 1.1:+21817218 | MS.gene026236:CDS |
| TTGTTTGAAACATCTGCCAG+TGG | 0.641328 | 1.1:-21834457 | None:intergenic |
| CTTCATAAACCTGCTCGCAA+GGG | 0.644216 | 1.1:+21832901 | MS.gene026236:CDS |
| GAAGCCACTGATAGATGCTG+TGG | 0.646591 | 1.1:+21816879 | MS.gene026236:CDS |
| ATAGATGCTGTGGTTTGTGG+CGG | 0.653066 | 1.1:+21816889 | MS.gene026236:CDS |
| CTTAGGTGCATAGGTTCGAG+AGG | 0.655245 | 1.1:-21832769 | None:intergenic |
| CATGAAACTTCTGTGCAACA+TGG | 0.656236 | 1.1:-21818596 | None:intergenic |
| TTGACTTTGATGACCGAGTG+AGG | 0.656661 | 1.1:+21818943 | MS.gene026236:CDS |
| AGTACACCAAAACATATGCA+GGG | 0.657650 | 1.1:-21832000 | None:intergenic |
| GCCTGCAGGAGAAAGAAGAG+TGG | 0.659028 | 1.1:-21832197 | None:intergenic |
| TCAACTGATCCAGAATCAGA+CGG | 0.659939 | 1.1:-21833075 | None:intergenic |
| AACAACTTCAAAGATACATG+TGG | 0.665571 | 1.1:+21833255 | MS.gene026236:CDS |
| TTTGAGCGAGGTGAGATCCA+TGG | 0.668375 | 1.1:-21815614 | None:intergenic |
| GTGTTGCTTATTAATGCTGG+AGG | 0.670131 | 1.1:+21817251 | MS.gene026236:CDS |
| ACATACCTTTGCAATCAACA+TGG | 0.676644 | 1.1:-21830002 | None:intergenic |
| ATTTATGACAGAGACGCCGT+GGG | 0.679070 | 1.1:+21818258 | MS.gene026236:CDS |
| ATCGGAGATGAGTTTGAGCG+AGG | 0.686621 | 1.1:-21815626 | None:intergenic |
| TATTTCCATCAACTTCTGTG+AGG | 0.695527 | 1.1:-21819161 | None:intergenic |
| CTCGCTCTATACAATGACGA+AGG | 0.699081 | 1.1:-21832518 | None:intergenic |
| ATTTGTGCTAGAAATAACAG+CGG | 0.705981 | 1.1:+21835490 | MS.gene026236:CDS |
| CAAACCACAGCATCTATCAG+TGG | 0.707630 | 1.1:-21816883 | None:intergenic |
| CTGAGATGTATCATGCAATG+AGG | 0.731981 | 1.1:-21825531 | None:intergenic |
| AGAATGCTACGGGAAAATGG+TGG | 0.732930 | 1.1:+21827590 | MS.gene026236:CDS |
| AAAGATAATCTAAAACACAG+TGG | 0.737618 | 1.1:-21822185 | None:intergenic |
| GTATAGAGCGAGTCTCACGA+AGG | 0.749587 | 1.1:+21832529 | MS.gene026236:CDS |
| ACTGATCCAGAATCAGACGG+AGG | 0.753799 | 1.1:-21833072 | None:intergenic |
| TGACCGAGTGAGGATGCAGG+CGG | 0.755478 | 1.1:+21818953 | MS.gene026236:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 21815616 | 21835546 | 21815616 | ID=MS.gene026236 |
| chr1.1 | mRNA | 21815616 | 21835546 | 21815616 | ID=MS.gene026236.t1;Parent=MS.gene026236 |
| chr1.1 | exon | 21815616 | 21815711 | 21815616 | ID=MS.gene026236.t1.exon1;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21815616 | 21815711 | 21815616 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21816787 | 21817020 | 21816787 | ID=MS.gene026236.t1.exon2;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21816787 | 21817020 | 21816787 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21817147 | 21817328 | 21817147 | ID=MS.gene026236.t1.exon3;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21817147 | 21817328 | 21817147 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21817698 | 21817824 | 21817698 | ID=MS.gene026236.t1.exon4;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21817698 | 21817824 | 21817698 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21818156 | 21818383 | 21818156 | ID=MS.gene026236.t1.exon5;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21818156 | 21818383 | 21818156 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21818528 | 21818744 | 21818528 | ID=MS.gene026236.t1.exon6;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21818528 | 21818744 | 21818528 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21818922 | 21819067 | 21818922 | ID=MS.gene026236.t1.exon7;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21818922 | 21819067 | 21818922 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21819142 | 21819299 | 21819142 | ID=MS.gene026236.t1.exon8;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21819142 | 21819299 | 21819142 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21819382 | 21819531 | 21819382 | ID=MS.gene026236.t1.exon9;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21819382 | 21819531 | 21819382 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21819602 | 21819650 | 21819602 | ID=MS.gene026236.t1.exon10;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21819602 | 21819650 | 21819602 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21820854 | 21821042 | 21820854 | ID=MS.gene026236.t1.exon11;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21820854 | 21821042 | 21820854 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21822084 | 21822254 | 21822084 | ID=MS.gene026236.t1.exon12;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21822084 | 21822254 | 21822084 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21822921 | 21823060 | 21822921 | ID=MS.gene026236.t1.exon13;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21822921 | 21823060 | 21822921 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21824125 | 21824245 | 21824125 | ID=MS.gene026236.t1.exon14;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21824125 | 21824245 | 21824125 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21824759 | 21824899 | 21824759 | ID=MS.gene026236.t1.exon15;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21824759 | 21824899 | 21824759 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21825023 | 21825097 | 21825023 | ID=MS.gene026236.t1.exon16;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21825023 | 21825097 | 21825023 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21825264 | 21825377 | 21825264 | ID=MS.gene026236.t1.exon17;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21825264 | 21825377 | 21825264 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21825503 | 21825577 | 21825503 | ID=MS.gene026236.t1.exon18;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21825503 | 21825577 | 21825503 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21827497 | 21827624 | 21827497 | ID=MS.gene026236.t1.exon19;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21827497 | 21827624 | 21827497 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21829901 | 21830018 | 21829901 | ID=MS.gene026236.t1.exon20;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21829901 | 21830018 | 21829901 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21831336 | 21831470 | 21831336 | ID=MS.gene026236.t1.exon21;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21831336 | 21831470 | 21831336 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21831908 | 21832098 | 21831908 | ID=MS.gene026236.t1.exon22;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21831908 | 21832098 | 21831908 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21832196 | 21832343 | 21832196 | ID=MS.gene026236.t1.exon23;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21832196 | 21832343 | 21832196 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21832422 | 21832556 | 21832422 | ID=MS.gene026236.t1.exon24;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21832422 | 21832556 | 21832422 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21832690 | 21832791 | 21832690 | ID=MS.gene026236.t1.exon25;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21832690 | 21832791 | 21832690 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21832889 | 21833284 | 21832889 | ID=MS.gene026236.t1.exon26;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21832889 | 21833284 | 21832889 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21834448 | 21834497 | 21834448 | ID=MS.gene026236.t1.exon27;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21834448 | 21834497 | 21834448 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21835281 | 21835378 | 21835281 | ID=MS.gene026236.t1.exon28;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21835281 | 21835378 | 21835281 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| chr1.1 | exon | 21835482 | 21835546 | 21835482 | ID=MS.gene026236.t1.exon29;Parent=MS.gene026236.t1 |
| chr1.1 | CDS | 21835482 | 21835546 | 21835482 | ID=cds.MS.gene026236.t1;Parent=MS.gene026236.t1 |
| Gene Sequence |
| Protein sequence |
