Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02628.t1 | XP_013461353.1 | 96.2 | 260 | 10 | 0 | 1 | 260 | 1 | 260 | 1.50E-137 | 498.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02628.t1 | Q54GN8 | 73.1 | 260 | 70 | 0 | 1 | 260 | 1 | 260 | 1.5e-106 | 387.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02628.t1 | I3STA8 | 96.2 | 260 | 10 | 0 | 1 | 260 | 1 | 260 | 1.1e-137 | 498.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07704 | MS.gene02628 | PPI |
| MS.gene02628 | MS.gene07405 | PPI |
| MS.gene02628 | MS.gene85577 | PPI |
| MS.gene67460 | MS.gene02628 | PPI |
| MS.gene02628 | MS.gene004882 | PPI |
| MS.gene02628 | MS.gene64789 | PPI |
| MS.gene02628 | MS.gene89672 | PPI |
| MS.gene02628 | MS.gene012127 | PPI |
| MS.gene017622 | MS.gene02628 | PPI |
| MS.gene02628 | MS.gene064459 | PPI |
| MS.gene68079 | MS.gene02628 | PPI |
| MS.gene02628 | MS.gene59485 | PPI |
| MS.gene02628 | MS.gene44230 | PPI |
| MS.gene051451 | MS.gene02628 | PPI |
| MS.gene02628 | MS.gene062254 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02628.t1 | MTR_3g088865 | 96.154 | 260 | 10 | 0 | 1 | 260 | 1 | 260 | 0.0 | 521 |
| MS.gene02628.t1 | MTR_0508s0010 | 91.154 | 260 | 23 | 0 | 1 | 260 | 1 | 260 | 2.44e-179 | 493 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02628.t1 | AT5G06360 | 86.154 | 260 | 36 | 0 | 1 | 260 | 1 | 260 | 5.47e-171 | 472 |
Find 71 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGTTCCTGCATATCTTT+TGG | 0.216509 | 3.3:-74889037 | MS.gene02628:CDS |
| GGAACAGTCCCTTGGTATTA+AGG | 0.237262 | 3.3:-74889737 | MS.gene02628:intron |
| ACATTCAATCTAGAAATTAT+TGG | 0.300648 | 3.3:-74888043 | MS.gene02628:CDS |
| GAAGGAGAAGGCTGGGAAAT+GGG | 0.301706 | 3.3:-74888865 | MS.gene02628:CDS |
| GGAAGGAGAAGGCTGGGAAA+TGG | 0.307698 | 3.3:-74888866 | MS.gene02628:CDS |
| CAGGTAAATGTTAGCGAACT+TGG | 0.326690 | 3.3:-74887800 | MS.gene02628:CDS |
| TTTCTGGGTTGTTGGTAACC+TGG | 0.337046 | 3.3:+74887644 | None:intergenic |
| TTGAATGTGCATTTAAGTTC+AGG | 0.355975 | 3.3:+74888058 | None:intergenic |
| CGAATGAACCGCTCATACTT+TGG | 0.366876 | 3.3:+74888121 | None:intergenic |
| AGGTGTACATAGGGCCATTA+GGG | 0.368687 | 3.3:+74888008 | None:intergenic |
| GAGGTGTACATAGGGCCATT+AGG | 0.373392 | 3.3:+74888007 | None:intergenic |
| CCTCTCTTGGTGTCATTACC+AGG | 0.375954 | 3.3:-74887988 | MS.gene02628:CDS |
| AACCATCCTCTTCCATTGCT+TGG | 0.381373 | 3.3:+74888186 | None:intergenic |
| CAAGGCTGATGATAATGTTC+AGG | 0.418037 | 3.3:-74889064 | MS.gene02628:CDS |
| AAATGTTAGCGAACTTGGTT+TGG | 0.420710 | 3.3:-74887795 | MS.gene02628:CDS |
| TTCTGGGTTGTTGGTAACCT+GGG | 0.421246 | 3.3:+74887645 | None:intergenic |
| GAGCGGTTCATTCGACCTAC+TGG | 0.434653 | 3.3:-74888112 | MS.gene02628:CDS |
| AGCTCACAAGCACTCTAAAC+AGG | 0.437905 | 3.3:-74889858 | MS.gene02628:CDS |
| TTACCAAAGCTACGTTTGTT+GGG | 0.448001 | 3.3:-74888165 | MS.gene02628:CDS |
| GGCCCTATGTACACCTCTCT+TGG | 0.470350 | 3.3:-74888001 | MS.gene02628:CDS |
| GAACAGTCCCTTGGTATTAA+GGG | 0.470500 | 3.3:-74889736 | MS.gene02628:intron |
| AAAGCTACGTTTGTTGGGCC+TGG | 0.474081 | 3.3:-74888160 | MS.gene02628:CDS |
| CTTGGTTTGGTTACACCGGC+AGG | 0.474888 | 3.3:-74887782 | MS.gene02628:CDS |
| CTAGCCGCAAAATGAGCATA+TGG | 0.475469 | 3.3:-74889951 | MS.gene02628:intron |
| AGGCCCAACAAACGTAGCTT+TGG | 0.479383 | 3.3:+74888162 | None:intergenic |
| GTTACCAAAGCTACGTTTGT+TGG | 0.484389 | 3.3:-74888166 | MS.gene02628:CDS |
| ATGAACCGCTCATACTTTGG+AGG | 0.495101 | 3.3:+74888124 | None:intergenic |
| AACATTTCATCTTCAGCCAC+AGG | 0.498226 | 3.3:+74888661 | None:intergenic |
| GCAACACCATTAAGCAAAAG+AGG | 0.504420 | 3.3:-74888887 | MS.gene02628:CDS |
| AAAAGAGGAAGGAGAAGGCT+GGG | 0.512948 | 3.3:-74888872 | MS.gene02628:CDS |
| ATTCCACTGGAACAGTCCCT+TGG | 0.512987 | 3.3:-74889745 | MS.gene02628:intron |
| TACCTCAATTATAGATCCCC+TGG | 0.514336 | 3.3:+74887970 | None:intergenic |
| GCACTCTAAACAGGCCCAGC+AGG | 0.517478 | 3.3:-74889849 | MS.gene02628:intron |
| CCCCACACAACTTTCCCTGC+CGG | 0.519424 | 3.3:+74887767 | None:intergenic |
| CAAAAGAGGAAGGAGAAGGC+TGG | 0.524008 | 3.3:-74888873 | MS.gene02628:CDS |
| CGCAATCTCACCTTAGGTAG+AGG | 0.525741 | 3.3:+74888837 | None:intergenic |
| TCATTCGACCTACTGGATTG+AGG | 0.528388 | 3.3:-74888105 | MS.gene02628:CDS |
| TCACGATCCAAAAGATATGC+AGG | 0.530672 | 3.3:+74889030 | None:intergenic |
| CACCGGCAGGGAAAGTTGTG+TGG | 0.551474 | 3.3:-74887769 | MS.gene02628:CDS |
| TTGCAGCCAAGCAATGGAAG+AGG | 0.553612 | 3.3:-74888192 | MS.gene02628:intron |
| CACCAAGAGAGGTGTACATA+GGG | 0.554572 | 3.3:+74887999 | None:intergenic |
| ATGGGATGTTCCTCTACCTA+AGG | 0.559228 | 3.3:-74888847 | MS.gene02628:intron |
| ACACCAAGAGAGGTGTACAT+AGG | 0.561851 | 3.3:+74887998 | None:intergenic |
| ACCAACAACCCAGAAAATGA+TGG | 0.563594 | 3.3:-74887637 | MS.gene02628:CDS |
| ACCGGCAGGGAAAGTTGTGT+GGG | 0.567026 | 3.3:-74887768 | MS.gene02628:CDS |
| TGATTTGAATTAAACCTGCT+GGG | 0.569811 | 3.3:+74889835 | None:intergenic |
| ATGTTCAAAGTGGTCCGCAC+CGG | 0.580559 | 3.3:-74888643 | MS.gene02628:CDS |
| GGCTGATGATAATGTTCAGG+AGG | 0.580998 | 3.3:-74889061 | MS.gene02628:CDS |
| TACCAGGGGATCTATAATTG+AGG | 0.588901 | 3.3:-74887972 | MS.gene02628:intron |
| TGAGAACACAACACGAGCAA+AGG | 0.595295 | 3.3:-74889010 | MS.gene02628:intron |
| CTCTCTTGGTGTCATTACCA+GGG | 0.600053 | 3.3:-74887987 | MS.gene02628:CDS |
| CACCATTAAGCAAAAGAGGA+AGG | 0.600141 | 3.3:-74888883 | MS.gene02628:CDS |
| CGAACTTGGTTTGGTTACAC+CGG | 0.600179 | 3.3:-74887786 | MS.gene02628:CDS |
| GAATGCAGGTAAATATGCCC+AGG | 0.602897 | 3.3:-74887662 | MS.gene02628:intron |
| ATTTCCTTAGGTACGTCCTG+TGG | 0.610316 | 3.3:-74888677 | MS.gene02628:intron |
| AGATGTTGACTCATCATGCA+TGG | 0.617671 | 3.3:+74889092 | None:intergenic |
| TGCATGATGAGTCAACATCT+AGG | 0.617897 | 3.3:-74889089 | MS.gene02628:CDS |
| TCTCTTGGTGTCATTACCAG+GGG | 0.619690 | 3.3:-74887986 | MS.gene02628:CDS |
| TAAGCAAAAGAGGAAGGAGA+AGG | 0.630601 | 3.3:-74888877 | MS.gene02628:CDS |
| TCATCTTACCCTTAATACCA+AGG | 0.634675 | 3.3:+74889728 | None:intergenic |
| TTGGTTTGGTTACACCGGCA+GGG | 0.636596 | 3.3:-74887781 | MS.gene02628:CDS |
| CATCTTACCCTTAATACCAA+GGG | 0.636802 | 3.3:+74889729 | None:intergenic |
| TTAGTGAACCTCAATCCAGT+AGG | 0.646142 | 3.3:+74888097 | None:intergenic |
| TGAGTCAACATCTAGGCGCA+AGG | 0.649808 | 3.3:-74889082 | MS.gene02628:CDS |
| AGCCAAGCAATGGAAGAGGA+TGG | 0.659521 | 3.3:-74888188 | MS.gene02628:CDS |
| CCTGGTAATGACACCAAGAG+AGG | 0.664047 | 3.3:+74887988 | None:intergenic |
| GCTGATGATAATGTTCAGGA+GGG | 0.669436 | 3.3:-74889060 | MS.gene02628:CDS |
| GAAAACCTCCAAAGTATGAG+CGG | 0.683082 | 3.3:-74888129 | MS.gene02628:CDS |
| TTTCTTCGTGATCCAAACGG+CGG | 0.696050 | 3.3:+74889906 | None:intergenic |
| TGAAGATGAAATGTTCAAAG+TGG | 0.707953 | 3.3:-74888653 | MS.gene02628:CDS |
| CCGGCAGGGAAAGTTGTGTG+GGG | 0.732167 | 3.3:-74887767 | MS.gene02628:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAATTTATCAAATGA+TGG | - | chr3.3:74889331-74889350 | MS.gene02628:intron | 10.0% |
| !!! | AGTTAATTATAACTTTAAAA+AGG | + | chr3.3:74888964-74888983 | None:intergenic | 10.0% |
| !!! | ATTTTAATTTATCAAATGAT+GGG | - | chr3.3:74889332-74889351 | MS.gene02628:intron | 10.0% |
| !! | AAATTATAAGAGAAACTATT+AGG | - | chr3.3:74888250-74888269 | MS.gene02628:intron | 15.0% |
| !!! | ATATTTTCATAAATCTAACT+GGG | - | chr3.3:74887899-74887918 | MS.gene02628:intron | 15.0% |
| !!! | TATATTTTCATAAATCTAAC+TGG | - | chr3.3:74887898-74887917 | MS.gene02628:intron | 15.0% |
| !! | AAACAAAGAAAAACATAAAC+AGG | + | chr3.3:74887656-74887675 | None:intergenic | 20.0% |
| !! | ACATTCAATCTAGAAATTAT+TGG | - | chr3.3:74889634-74889653 | MS.gene02628:intron | 20.0% |
| !! | ATTTCTTGTTCTTATAATTG+AGG | - | chr3.3:74889735-74889754 | MS.gene02628:intron | 20.0% |
| !! | TTTCTTGTTCTTATAATTGA+GGG | - | chr3.3:74889736-74889755 | MS.gene02628:intron | 20.0% |
| !!! | AATCAAGCACAAATTTTTAT+TGG | + | chr3.3:74888126-74888145 | None:intergenic | 20.0% |
| !!! | ATATTTTCTCAGTTCTTTAA+AGG | - | chr3.3:74889249-74889268 | MS.gene02628:intron | 20.0% |
| !!! | GTTTCTCTTATAATTTTTCA+AGG | + | chr3.3:74888246-74888265 | None:intergenic | 20.0% |
| !!! | TATTTTTGTGACTTGTATTT+TGG | - | chr3.3:74889938-74889957 | MS.gene02628:CDS | 20.0% |
| ! | AAACTTACAAGAATATGCAA+GGG | + | chr3.3:74888736-74888755 | None:intergenic | 25.0% |
| ! | ATAAGAGAAACTATTAGGAA+AGG | - | chr3.3:74888255-74888274 | MS.gene02628:intron | 25.0% |
| ! | ATGATCATTTCCTTTCTAAA+GGG | + | chr3.3:74888913-74888932 | None:intergenic | 25.0% |
| ! | GTTATAATTAACTGTATGTG+TGG | - | chr3.3:74888971-74888990 | MS.gene02628:intron | 25.0% |
| ! | GTTGTTGTATTTCTTCAATA+TGG | - | chr3.3:74888450-74888469 | MS.gene02628:intron | 25.0% |
| ! | TAAACTTACAAGAATATGCA+AGG | + | chr3.3:74888737-74888756 | None:intergenic | 25.0% |
| ! | TATATCCATAAACAATAGGA+GGG | + | chr3.3:74889217-74889236 | None:intergenic | 25.0% |
| ! | TATTAGGAAAGGTTTATGAT+AGG | - | chr3.3:74888266-74888285 | MS.gene02628:intron | 25.0% |
| ! | TTCTTGTTCTTATAATTGAG+GGG | - | chr3.3:74889737-74889756 | MS.gene02628:intron | 25.0% |
| ! | TTTAGAAAGGAAATGATCAT+CGG | - | chr3.3:74888913-74888932 | MS.gene02628:intron | 25.0% |
| !! | ATACTTACTCTTTCTTTTAC+CGG | + | chr3.3:74889056-74889075 | None:intergenic | 25.0% |
| !! | TAATACATCCATCATTTTCT+GGG | + | chr3.3:74890051-74890070 | None:intergenic | 25.0% |
| !! | TTAATACATCCATCATTTTC+TGG | + | chr3.3:74890052-74890071 | None:intergenic | 25.0% |
| !! | TTGTTATTATCACAACTTGT+TGG | - | chr3.3:74889830-74889849 | MS.gene02628:intron | 25.0% |
| !!! | TTTTTCGGCATAATTTTTCT+TGG | + | chr3.3:74887978-74887997 | None:intergenic | 25.0% |
| AAACAGAATCAGAAAAAGCA+TGG | + | chr3.3:74887685-74887704 | None:intergenic | 30.0% | |
| AGAAAAAATTCGGAAGAAAG+AGG | - | chr3.3:74887789-74887808 | MS.gene02628:CDS | 30.0% | |
| AGGTTTATGATAGGTCATTA+TGG | - | chr3.3:74888275-74888294 | MS.gene02628:intron | 30.0% | |
| AGTATCACATTTATTGCTTC+TGG | - | chr3.3:74889071-74889090 | MS.gene02628:CDS | 30.0% | |
| ATTAACGCATTTCAATCATG+TGG | + | chr3.3:74889136-74889155 | None:intergenic | 30.0% | |
| CTATATCCATAAACAATAGG+AGG | + | chr3.3:74889218-74889237 | None:intergenic | 30.0% | |
| CTGAGAAAATATAGATTTCC+TGG | + | chr3.3:74889241-74889260 | None:intergenic | 30.0% | |
| GATGATCATTTCCTTTCTAA+AGG | + | chr3.3:74888914-74888933 | None:intergenic | 30.0% | |
| GTGTTAGATAATGATTAGCA+CGG | - | chr3.3:74888505-74888524 | MS.gene02628:intron | 30.0% | |
| TATGTTCATTAAAGAGTTGC+TGG | - | chr3.3:74888479-74888498 | MS.gene02628:intron | 30.0% | |
| TATTGTTTATGGATATAGCC+AGG | - | chr3.3:74889220-74889239 | MS.gene02628:intron | 30.0% | |
| TGAAGATGAAATGTTCAAAG+TGG | - | chr3.3:74889024-74889043 | MS.gene02628:CDS | 30.0% | |
| TGATTTGAATTAAACCTGCT+GGG | + | chr3.3:74887845-74887864 | None:intergenic | 30.0% | |
| TGGATCACGAAGAAAAAATT+CGG | - | chr3.3:74887779-74887798 | MS.gene02628:CDS | 30.0% | |
| TGGCTATATCCATAAACAAT+AGG | + | chr3.3:74889221-74889240 | None:intergenic | 30.0% | |
| TGTGCTTGATTTCTTGAATA+TGG | - | chr3.3:74888135-74888154 | MS.gene02628:CDS | 30.0% | |
| TGTTATCATGCAGAATTGAA+AGG | - | chr3.3:74888692-74888711 | MS.gene02628:intron | 30.0% | |
| TTTAGGTGATATTGATGCAT+TGG | - | chr3.3:74889977-74889996 | MS.gene02628:intron | 30.0% | |
| ! | AACAGAATCAGAAAAAGCAT+GGG | + | chr3.3:74887684-74887703 | None:intergenic | 30.0% |
| ! | AGAACGTATCAGTATTGAAA+AGG | + | chr3.3:74889810-74889829 | None:intergenic | 30.0% |
| ! | ATCAGTATTGAAAAGGTCAA+AGG | + | chr3.3:74889803-74889822 | None:intergenic | 30.0% |
| ! | TCAGTATTGAAAAGGTCAAA+GGG | + | chr3.3:74889802-74889821 | None:intergenic | 30.0% |
| ! | TCTTGAATATGGTGGAAAAT+AGG | - | chr3.3:74888146-74888165 | MS.gene02628:CDS | 30.0% |
| ! | TTGAATGTGCATTTAAGTTC+AGG | + | chr3.3:74889622-74889641 | None:intergenic | 30.0% |
| !! | ATCAAATGATGGGTTTGTAA+GGG | - | chr3.3:74889342-74889361 | MS.gene02628:intron | 30.0% |
| !! | TATCAAATGATGGGTTTGTA+AGG | - | chr3.3:74889341-74889360 | MS.gene02628:intron | 30.0% |
| !!! | ATCTTGTTTTGTCAACAGTT+TGG | - | chr3.3:74888562-74888581 | MS.gene02628:intron | 30.0% |
| !!! | TGCTTTTTTTCCCTTTAGAA+AGG | - | chr3.3:74888900-74888919 | MS.gene02628:intron | 30.0% |
| !!! | TTTTTTCTTCGTGATCCAAA+CGG | + | chr3.3:74887777-74887796 | None:intergenic | 30.0% |
| AAATGTTAGCGAACTTGGTT+TGG | - | chr3.3:74889882-74889901 | MS.gene02628:CDS | 35.0% | |
| AATACTATGAGATCTGCTTC+TGG | + | chr3.3:74889453-74889472 | None:intergenic | 35.0% | |
| AATTTCCGTGACTTAAGAGT+TGG | + | chr3.3:74889315-74889334 | None:intergenic | 35.0% | |
| AGGGAAAAAAAGCAGCATAA+TGG | + | chr3.3:74888894-74888913 | None:intergenic | 35.0% | |
| AGTAAGGAGAGTAAATCAGA+TGG | - | chr3.3:74888213-74888232 | MS.gene02628:intron | 35.0% | |
| AGTTCCTTGTTAGCATGTTA+CGG | - | chr3.3:74889394-74889413 | MS.gene02628:intron | 35.0% | |
| CATCTTACCCTTAATACCAA+GGG | + | chr3.3:74887951-74887970 | None:intergenic | 35.0% | |
| GAAGCAGATCTCATAGTATT+TGG | - | chr3.3:74889453-74889472 | MS.gene02628:intron | 35.0% | |
| GACGTGTATAATCTGTAGTA+AGG | - | chr3.3:74888197-74888216 | MS.gene02628:intron | 35.0% | |
| GCTTGATTTCTTGAATATGG+TGG | - | chr3.3:74888138-74888157 | MS.gene02628:CDS | 35.0% | |
| GGGAAAAAAAGCAGCATAAT+GGG | + | chr3.3:74888893-74888912 | None:intergenic | 35.0% | |
| GTGATTTGAATTAAACCTGC+TGG | + | chr3.3:74887846-74887865 | None:intergenic | 35.0% | |
| TACCTGAAATTACAGTAAGC+AGG | + | chr3.3:74889863-74889882 | None:intergenic | 35.0% | |
| TAGATAATGATTAGCACGGT+AGG | - | chr3.3:74888509-74888528 | MS.gene02628:intron | 35.0% | |
| TCATCTTACCCTTAATACCA+AGG | + | chr3.3:74887952-74887971 | None:intergenic | 35.0% | |
| TGCTTCTGGTATTATGATCT+TGG | - | chr3.3:74889085-74889104 | MS.gene02628:CDS | 35.0% | |
| TTACCAAAGCTACGTTTGTT+GGG | - | chr3.3:74889512-74889531 | MS.gene02628:intron | 35.0% | |
| TTCATTAAAGAGTTGCTGGT+TGG | - | chr3.3:74888483-74888502 | MS.gene02628:intron | 35.0% | |
| TTCCTGCTTACTGTAATTTC+AGG | - | chr3.3:74889858-74889877 | MS.gene02628:CDS | 35.0% | |
| ! | ACTTTTGCACTCGCAATTTA+AGG | - | chr3.3:74889762-74889781 | MS.gene02628:intron | 35.0% |
| ! | AGTATTGAAAAGGTCAAAGG+GGG | + | chr3.3:74889800-74889819 | None:intergenic | 35.0% |
| ! | ATATGGTGGAAAATAGGCTT+AGG | - | chr3.3:74888152-74888171 | MS.gene02628:CDS | 35.0% |
| ! | CAGTATTGAAAAGGTCAAAG+GGG | + | chr3.3:74889801-74889820 | None:intergenic | 35.0% |
| ! | GTTGTCATGGCTGAAATTTT+AGG | - | chr3.3:74889960-74889979 | MS.gene02628:intron | 35.0% |
| ! | TGAGCTGCTTGAATTTTTGT+GGG | - | chr3.3:74889273-74889292 | MS.gene02628:intron | 35.0% |
| ! | TTGAGCTGCTTGAATTTTTG+TGG | - | chr3.3:74889272-74889291 | MS.gene02628:intron | 35.0% |
| !! | ATCTTGGTGTCACATGTATT+AGG | - | chr3.3:74889101-74889120 | MS.gene02628:intron | 35.0% |
| !! | GGGTTTCTTTTTAATTCCAC+TGG | - | chr3.3:74887919-74887938 | MS.gene02628:intron | 35.0% |
| !! | TCTTGGTGTCACATGTATTA+GGG | - | chr3.3:74889102-74889121 | MS.gene02628:intron | 35.0% |
| !! | TTTTTGTTTGCCATGAATGC+AGG | - | chr3.3:74890001-74890020 | MS.gene02628:intron | 35.0% |
| !!! | GACTTGTATTTTGGTTGTCA+TGG | - | chr3.3:74889947-74889966 | MS.gene02628:CDS | 35.0% |
| AAACGCCAACTCTTAAGTCA+CGG | - | chr3.3:74889307-74889326 | MS.gene02628:intron | 40.0% | |
| AACATTTCATCTTCAGCCAC+AGG | + | chr3.3:74889019-74889038 | None:intergenic | 40.0% | |
| AAGGAGAGTAAATCAGATGG+AGG | - | chr3.3:74888216-74888235 | MS.gene02628:intron | 40.0% | |
| ACCAACAACCCAGAAAATGA+TGG | - | chr3.3:74890040-74890059 | MS.gene02628:intron | 40.0% | |
| ATTGAACGCAATCTCACCTT+AGG | + | chr3.3:74888849-74888868 | None:intergenic | 40.0% | |
| CACCATTAAGCAAAAGAGGA+AGG | - | chr3.3:74888794-74888813 | MS.gene02628:intron | 40.0% | |
| CAGGTAAATGTTAGCGAACT+TGG | - | chr3.3:74889877-74889896 | MS.gene02628:CDS | 40.0% | |
| CGTAATTTGATCCATGTAGC+CGG | - | chr3.3:74888298-74888317 | MS.gene02628:intron | 40.0% | |
| GAAAACCTCCAAAGTATGAG+CGG | - | chr3.3:74889548-74889567 | MS.gene02628:intron | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | - | chr3.3:74888160-74888179 | MS.gene02628:CDS | 40.0% | |
| GAAAGGAAATGATCATCGGA+AGG | - | chr3.3:74888917-74888936 | MS.gene02628:intron | 40.0% | |
| GAACAGTCCCTTGGTATTAA+GGG | - | chr3.3:74887941-74887960 | MS.gene02628:intron | 40.0% | |
| GAGCGTCACCTTAAAAAGTA+TGG | - | chr3.3:74887748-74887767 | MS.gene02628:intron | 40.0% | |
| GCAACACCATTAAGCAAAAG+AGG | - | chr3.3:74888790-74888809 | MS.gene02628:intron | 40.0% | |
| GGAGTGAAGAAAAACCCTAA+TGG | - | chr3.3:74889655-74889674 | MS.gene02628:intron | 40.0% | |
| GGCATATTTACCTGCATTCA+TGG | + | chr3.3:74890014-74890033 | None:intergenic | 40.0% | |
| GTTACCAAAGCTACGTTTGT+TGG | - | chr3.3:74889511-74889530 | MS.gene02628:intron | 40.0% | |
| GTTCCTTGTTAGCATGTTAC+GGG | - | chr3.3:74889395-74889414 | MS.gene02628:intron | 40.0% | |
| TAAGCAAAAGAGGAAGGAGA+AGG | - | chr3.3:74888800-74888819 | MS.gene02628:intron | 40.0% | |
| TACCAGGGGATCTATAATTG+AGG | - | chr3.3:74889705-74889724 | MS.gene02628:CDS | 40.0% | |
| TACCTCAATTATAGATCCCC+TGG | + | chr3.3:74889710-74889729 | None:intergenic | 40.0% | |
| TCACGATCCAAAAGATATGC+AGG | + | chr3.3:74888650-74888669 | None:intergenic | 40.0% | |
| TGCATGATGAGTCAACATCT+AGG | - | chr3.3:74888588-74888607 | MS.gene02628:intron | 40.0% | |
| TGTCACATGTATTAGGGTCT+TGG | - | chr3.3:74889108-74889127 | MS.gene02628:intron | 40.0% | |
| TTAGTGAACCTCAATCCAGT+AGG | + | chr3.3:74889583-74889602 | None:intergenic | 40.0% | |
| TTCCTTGTTAGCATGTTACG+GGG | - | chr3.3:74889396-74889415 | MS.gene02628:intron | 40.0% | |
| TTGCTCCCTCCTATTGTTTA+TGG | - | chr3.3:74889209-74889228 | MS.gene02628:intron | 40.0% | |
| ! | AAAAGCCTTATCCCACTAAG+TGG | + | chr3.3:74888326-74888345 | None:intergenic | 40.0% |
| ! | AAAGCCTTATCCCACTAAGT+GGG | + | chr3.3:74888325-74888344 | None:intergenic | 40.0% |
| ! | ACTTAGTGGGATAAGGCTTT+TGG | - | chr3.3:74888325-74888344 | MS.gene02628:intron | 40.0% |
| ! | AGCTGTTCCTGCATATCTTT+TGG | - | chr3.3:74888640-74888659 | MS.gene02628:CDS | 40.0% |
| ! | CAAGGCTGATGATAATGTTC+AGG | - | chr3.3:74888613-74888632 | MS.gene02628:intron | 40.0% |
| ! | CTCCTTCCTCTTTTGCTTAA+TGG | + | chr3.3:74888799-74888818 | None:intergenic | 40.0% |
| ! | GCTGATGATAATGTTCAGGA+GGG | - | chr3.3:74888617-74888636 | MS.gene02628:intron | 40.0% |
| ! | GTGTGGCTTTTCATTTCCTT+AGG | - | chr3.3:74888988-74889007 | MS.gene02628:intron | 40.0% |
| ! | TACTCTTTCTTTTACCGGTG+CGG | + | chr3.3:74889051-74889070 | None:intergenic | 40.0% |
| ! | TCCATCATTTTCTGGGTTGT+TGG | + | chr3.3:74890044-74890063 | None:intergenic | 40.0% |
| !! | AGATGTTGACTCATCATGCA+TGG | + | chr3.3:74888588-74888607 | None:intergenic | 40.0% |
| !! | CTCATACTTTGGAGGTTTTC+TGG | + | chr3.3:74889548-74889567 | None:intergenic | 40.0% |
| AAAAGAGGAAGGAGAAGGCT+GGG | - | chr3.3:74888805-74888824 | MS.gene02628:intron | 45.0% | |
| AACCATCCTCTTCCATTGCT+TGG | + | chr3.3:74889494-74889513 | None:intergenic | 45.0% | |
| AGCTCACAAGCACTCTAAAC+AGG | - | chr3.3:74887819-74887838 | MS.gene02628:intron | 45.0% | |
| AGGTGTACATAGGGCCATTA+GGG | + | chr3.3:74889672-74889691 | None:intergenic | 45.0% | |
| ATGAACCGCTCATACTTTGG+AGG | + | chr3.3:74889556-74889575 | None:intergenic | 45.0% | |
| ATGGGATGTTCCTCTACCTA+AGG | - | chr3.3:74888830-74888849 | MS.gene02628:intron | 45.0% | |
| ATTTCCTTAGGTACGTCCTG+TGG | - | chr3.3:74889000-74889019 | MS.gene02628:intron | 45.0% | |
| CGAATGAACCGCTCATACTT+TGG | + | chr3.3:74889559-74889578 | None:intergenic | 45.0% | |
| CTAGCCGCAAAATGAGCATA+TGG | - | chr3.3:74887726-74887745 | MS.gene02628:intron | 45.0% | |
| CTTATCCCAGTAAGTGAGGT+CGG | + | chr3.3:74888377-74888396 | None:intergenic | 45.0% | |
| GAATGCAGGTAAATATGCCC+AGG | - | chr3.3:74890015-74890034 | MS.gene02628:intron | 45.0% | |
| GGAACAGTCCCTTGGTATTA+AGG | - | chr3.3:74887940-74887959 | MS.gene02628:intron | 45.0% | |
| TACCCCGTAACATGCTAACA+AGG | + | chr3.3:74889401-74889420 | None:intergenic | 45.0% | |
| TCATTCGACCTACTGGATTG+AGG | - | chr3.3:74889572-74889591 | MS.gene02628:intron | 45.0% | |
| TCCATTGCTTGGCTGCAAAA+TGG | + | chr3.3:74889483-74889502 | None:intergenic | 45.0% | |
| TGAGAACACAACACGAGCAA+AGG | - | chr3.3:74888667-74888686 | MS.gene02628:CDS | 45.0% | |
| TGGTGGAAAATAGGCTTAGG+TGG | - | chr3.3:74888155-74888174 | MS.gene02628:CDS | 45.0% | |
| TTTCTTCGTGATCCAAACGG+CGG | + | chr3.3:74887774-74887793 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr3.3:74888324-74888343 | None:intergenic | 45.0% |
| ! | AAGCCTTATCCCAGTAAGTG+AGG | + | chr3.3:74888381-74888400 | None:intergenic | 45.0% |
| ! | ACACCAAGAGAGGTGTACAT+AGG | + | chr3.3:74889682-74889701 | None:intergenic | 45.0% |
| ! | ACCATTTTGCAGCCAAGCAA+TGG | - | chr3.3:74889479-74889498 | MS.gene02628:intron | 45.0% |
| ! | CACCAAGAGAGGTGTACATA+GGG | + | chr3.3:74889681-74889700 | None:intergenic | 45.0% |
| ! | CGCTCCATATGCTCATTTTG+CGG | + | chr3.3:74887733-74887752 | None:intergenic | 45.0% |
| ! | GCTGCTTGAATTTTTGTGGG+TGG | - | chr3.3:74889276-74889295 | MS.gene02628:intron | 45.0% |
| ! | GGCTGATGATAATGTTCAGG+AGG | - | chr3.3:74888616-74888635 | MS.gene02628:intron | 45.0% |
| ! | TAAAAAGTATGGCCGCCGTT+TGG | - | chr3.3:74887759-74887778 | MS.gene02628:intron | 45.0% |
| !! | AACGGCGGCCATACTTTTTA+AGG | + | chr3.3:74887759-74887778 | None:intergenic | 45.0% |
| !! | CCTCTTCATCTGCGCTTTTT+CGG | + | chr3.3:74887993-74888012 | None:intergenic | 45.0% |
| !! | CGAACTTGGTTTGGTTACAC+CGG | - | chr3.3:74889891-74889910 | MS.gene02628:CDS | 45.0% |
| !! | CTCTCTTGGTGTCATTACCA+GGG | - | chr3.3:74889690-74889709 | MS.gene02628:CDS | 45.0% |
| !! | GGAGGTTTTCTGGTAAAACC+AGG | + | chr3.3:74889538-74889557 | None:intergenic | 45.0% |
| !! | TCTCTTGGTGTCATTACCAG+GGG | - | chr3.3:74889691-74889710 | MS.gene02628:CDS | 45.0% |
| !! | TTCTGGGTTGTTGGTAACCT+GGG | + | chr3.3:74890035-74890054 | None:intergenic | 45.0% |
| !! | TTTCTGGGTTGTTGGTAACC+TGG | + | chr3.3:74890036-74890055 | None:intergenic | 45.0% |
| AGCCAAGCAATGGAAGAGGA+TGG | - | chr3.3:74889489-74889508 | MS.gene02628:intron | 50.0% | |
| AGGCCCAACAAACGTAGCTT+TGG | + | chr3.3:74889518-74889537 | None:intergenic | 50.0% | |
| ATACCAAGGGACTGTTCCAG+TGG | + | chr3.3:74887938-74887957 | None:intergenic | 50.0% | |
| ATGTAGCCGACCTCACTTAC+TGG | - | chr3.3:74888368-74888387 | MS.gene02628:intron | 50.0% | |
| ATGTTCAAAGTGGTCCGCAC+CGG | - | chr3.3:74889034-74889053 | MS.gene02628:CDS | 50.0% | |
| ATTCCACTGGAACAGTCCCT+TGG | - | chr3.3:74887932-74887951 | MS.gene02628:intron | 50.0% | |
| CAAAAGAGGAAGGAGAAGGC+TGG | - | chr3.3:74888804-74888823 | MS.gene02628:intron | 50.0% | |
| CGACCTCACTTACTGGGATA+AGG | - | chr3.3:74888375-74888394 | MS.gene02628:intron | 50.0% | |
| CGCAATCTCACCTTAGGTAG+AGG | + | chr3.3:74888843-74888862 | None:intergenic | 50.0% | |
| GAAGGAGAAGGCTGGGAAAT+GGG | - | chr3.3:74888812-74888831 | MS.gene02628:intron | 50.0% | |
| GAGGTGTACATAGGGCCATT+AGG | + | chr3.3:74889673-74889692 | None:intergenic | 50.0% | |
| GGAAATGATCATCGGAAGGC+AGG | - | chr3.3:74888921-74888940 | MS.gene02628:intron | 50.0% | |
| TGAGTCAACATCTAGGCGCA+AGG | - | chr3.3:74888595-74888614 | MS.gene02628:intron | 50.0% | |
| TGTAGCCGACCTCACTTACT+GGG | - | chr3.3:74888369-74888388 | MS.gene02628:intron | 50.0% | |
| TTGCAGCCAAGCAATGGAAG+AGG | - | chr3.3:74889485-74889504 | MS.gene02628:intron | 50.0% | |
| ! | AAAGCTACGTTTGTTGGGCC+TGG | - | chr3.3:74889517-74889536 | MS.gene02628:intron | 50.0% |
| ! | CCGAAAAAGCGCAGATGAAG+AGG | - | chr3.3:74887990-74888009 | MS.gene02628:CDS | 50.0% |
| ! | CCTGGTAATGACACCAAGAG+AGG | + | chr3.3:74889692-74889711 | None:intergenic | 50.0% |
| !! | CCTCTCTTGGTGTCATTACC+AGG | - | chr3.3:74889689-74889708 | MS.gene02628:CDS | 50.0% |
| !! | TTGGTTTGGTTACACCGGCA+GGG | - | chr3.3:74889896-74889915 | MS.gene02628:CDS | 50.0% |
| ACCGGCAGGGAAAGTTGTGT+GGG | - | chr3.3:74889909-74889928 | MS.gene02628:CDS | 55.0% | |
| CTTATCCCACTAAGTGGGGC+CGG | + | chr3.3:74888320-74888339 | None:intergenic | 55.0% | |
| GAGCGGTTCATTCGACCTAC+TGG | - | chr3.3:74889565-74889584 | MS.gene02628:intron | 55.0% | |
| GATCATCGGAAGGCAGGAAG+TGG | - | chr3.3:74888927-74888946 | MS.gene02628:intron | 55.0% | |
| GGAAGGAGAAGGCTGGGAAA+TGG | - | chr3.3:74888811-74888830 | MS.gene02628:intron | 55.0% | |
| GGCCCTATGTACACCTCTCT+TGG | - | chr3.3:74889676-74889695 | MS.gene02628:intron | 55.0% | |
| TCAGCCACAGGACGTACCTA+AGG | + | chr3.3:74889007-74889026 | None:intergenic | 55.0% | |
| !! | CTTGGTTTGGTTACACCGGC+AGG | - | chr3.3:74889895-74889914 | MS.gene02628:CDS | 55.0% |
| ACTAAGTGGGGCCGGCTACA+TGG | + | chr3.3:74888312-74888331 | None:intergenic | 60.0% | |
| ATGTAGCCGGCCCCACTTAG+TGG | - | chr3.3:74888311-74888330 | MS.gene02628:intron | 60.0% | |
| CACCGGCAGGGAAAGTTGTG+TGG | - | chr3.3:74889908-74889927 | MS.gene02628:CDS | 60.0% | |
| CCCCACACAACTTTCCCTGC+CGG | + | chr3.3:74889913-74889932 | None:intergenic | 60.0% | |
| CCGGCAGGGAAAGTTGTGTG+GGG | - | chr3.3:74889910-74889929 | MS.gene02628:CDS | 60.0% | |
| CGGCCCCACTTAGTGGGATA+AGG | - | chr3.3:74888318-74888337 | MS.gene02628:intron | 60.0% | |
| GCACTCTAAACAGGCCCAGC+AGG | - | chr3.3:74887828-74887847 | MS.gene02628:intron | 60.0% | |
| TGTAGCCGGCCCCACTTAGT+GGG | - | chr3.3:74888312-74888331 | MS.gene02628:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 74887609 | 74890090 | 74887609 | ID=MS.gene02628 |
| chr3.3 | mRNA | 74887609 | 74890090 | 74887609 | ID=MS.gene02628.t1;Parent=MS.gene02628 |
| chr3.3 | exon | 74890088 | 74890090 | 74890088 | ID=MS.gene02628.t1.exon1;Parent=MS.gene02628.t1 |
| chr3.3 | CDS | 74890088 | 74890090 | 74890088 | ID=cds.MS.gene02628.t1;Parent=MS.gene02628.t1 |
| chr3.3 | exon | 74889850 | 74889969 | 74889850 | ID=MS.gene02628.t1.exon2;Parent=MS.gene02628.t1 |
| chr3.3 | CDS | 74889850 | 74889969 | 74889850 | ID=cds.MS.gene02628.t1;Parent=MS.gene02628.t1 |
| chr3.3 | exon | 74889685 | 74889752 | 74889685 | ID=MS.gene02628.t1.exon3;Parent=MS.gene02628.t1 |
| chr3.3 | CDS | 74889685 | 74889752 | 74889685 | ID=cds.MS.gene02628.t1;Parent=MS.gene02628.t1 |
| chr3.3 | exon | 74889011 | 74889119 | 74889011 | ID=MS.gene02628.t1.exon4;Parent=MS.gene02628.t1 |
| chr3.3 | CDS | 74889011 | 74889119 | 74889011 | ID=cds.MS.gene02628.t1;Parent=MS.gene02628.t1 |
| chr3.3 | exon | 74888848 | 74888916 | 74888848 | ID=MS.gene02628.t1.exon5;Parent=MS.gene02628.t1 |
| chr3.3 | CDS | 74888848 | 74888916 | 74888848 | ID=cds.MS.gene02628.t1;Parent=MS.gene02628.t1 |
| chr3.3 | exon | 74888632 | 74888689 | 74888632 | ID=MS.gene02628.t1.exon6;Parent=MS.gene02628.t1 |
| chr3.3 | CDS | 74888632 | 74888689 | 74888632 | ID=cds.MS.gene02628.t1;Parent=MS.gene02628.t1 |
| chr3.3 | exon | 74887973 | 74888208 | 74887973 | ID=MS.gene02628.t1.exon7;Parent=MS.gene02628.t1 |
| chr3.3 | CDS | 74887973 | 74888208 | 74887973 | ID=cds.MS.gene02628.t1;Parent=MS.gene02628.t1 |
| chr3.3 | exon | 74887768 | 74887819 | 74887768 | ID=MS.gene02628.t1.exon8;Parent=MS.gene02628.t1 |
| chr3.3 | CDS | 74887768 | 74887819 | 74887768 | ID=cds.MS.gene02628.t1;Parent=MS.gene02628.t1 |
| chr3.3 | exon | 74887609 | 74887676 | 74887609 | ID=MS.gene02628.t1.exon9;Parent=MS.gene02628.t1 |
| chr3.3 | CDS | 74887609 | 74887676 | 74887609 | ID=cds.MS.gene02628.t1;Parent=MS.gene02628.t1 |
| Gene Sequence |
| Protein sequence |
