AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026309

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026309.t1 MTR_1g035730 95.690 348 15 0 1 348 103 450 0.0 707
MS.gene026309.t1 MTR_1g069460 46.197 355 182 3 1 348 185 537 7.01e-107 326
MS.gene026309.t1 MTR_7g098650 45.352 355 185 3 1 348 110 462 2.81e-105 320
MS.gene026309.t1 MTR_5g055350 43.094 362 186 5 1 348 83 438 2.15e-96 294
MS.gene026309.t1 MTR_3g084400 42.162 370 199 4 1 358 98 464 1.18e-95 293
MS.gene026309.t1 MTR_4g129930 42.618 359 192 4 1 348 102 457 2.10e-95 292
MS.gene026309.t1 MTR_5g095940 42.222 360 195 3 1 348 125 483 2.16e-90 280
MS.gene026309.t1 MTR_5g010370 40.113 354 200 9 1 348 191 538 2.94e-86 271
MS.gene026309.t1 MTR_3g007840 40.000 360 180 4 1 348 53 388 1.24e-83 260
MS.gene026309.t1 MTR_1g102430 40.997 361 192 10 2 348 132 485 1.05e-82 260
MS.gene026309.t1 MTR_5g010350 39.266 354 203 9 1 348 167 514 1.10e-81 258
MS.gene026309.t1 MTR_4g119810 35.310 371 212 11 1 347 73 439 2.98e-64 211
MS.gene026309.t1 MTR_5g095950 34.444 360 192 4 1 348 98 425 1.65e-63 210
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026309.t1 AT1G68470 64.205 352 119 3 1 350 99 445 2.63e-173 490
MS.gene026309.t1 AT2G20370 45.352 355 185 3 1 348 182 534 6.39e-103 316
MS.gene026309.t1 AT2G29040 45.787 356 183 6 1 348 330 683 3.54e-102 317
MS.gene026309.t1 AT4G13990 43.697 357 188 6 1 348 128 480 9.25e-97 297
MS.gene026309.t1 AT4G13990 43.697 357 188 6 1 348 128 480 9.25e-97 297
MS.gene026309.t1 AT2G31990 41.713 362 194 9 1 348 106 464 6.87e-91 281
MS.gene026309.t1 AT2G31990 41.713 362 194 9 1 348 114 472 8.40e-91 281
MS.gene026309.t1 AT2G31990 41.713 362 194 9 1 348 152 510 2.60e-90 281
MS.gene026309.t1 AT5G62220 42.276 369 190 12 2 355 150 510 6.08e-90 280
MS.gene026309.t1 AT2G32750 40.000 360 195 8 1 345 114 467 9.67e-87 271
MS.gene026309.t1 AT2G32750 40.000 360 195 8 1 345 116 469 1.04e-86 271
MS.gene026309.t1 AT2G32740 38.798 366 198 9 2 348 98 456 1.45e-85 266
MS.gene026309.t1 AT5G41250 38.418 354 203 8 1 348 208 552 1.93e-82 261
MS.gene026309.t1 AT1G63450 39.093 353 204 9 1 348 310 656 1.61e-79 256
MS.gene026309.t1 AT4G22580 36.043 369 206 13 1 348 68 427 3.45e-65 213
MS.gene026309.t1 AT1G67410 26.515 264 134 10 25 264 103 330 2.41e-12 68.2

Find 84 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCAAGTGGGTCCGATTT+TGG 0.211507 1.4:-20191839 MS.gene026309:CDS
GGAGGTGTTAATGGGAATTA+AGG 0.251312 1.4:-20191273 MS.gene026309:CDS
TAGAATAGAATTGCTTGATT+TGG 0.259412 1.4:+20192040 None:intergenic
TTGCACTTCAAGGAATTTCT+AGG 0.273213 1.4:-20191145 MS.gene026309:CDS
TATGATTGAGGAGGTGTTAA+TGG 0.285044 1.4:-20191282 MS.gene026309:CDS
ATGGAAGTGATGTTGGGTTT+AGG 0.291151 1.4:-20191181 MS.gene026309:CDS
TGGAAGTGATGTTGGGTTTA+GGG 0.307951 1.4:-20191180 MS.gene026309:CDS
TTGTGATTGGTTTGATCCCT+AGG 0.352787 1.4:-20191223 MS.gene026309:CDS
AAATCATTTCTGCTAAGAAT+TGG 0.356315 1.4:+20192104 None:intergenic
GGAAGTGCTTAGTGTTATAA+TGG 0.363737 1.4:-20191498 MS.gene026309:CDS
AAGCCATTGTTCTTCACATA+AGG 0.363823 1.4:+20192166 None:intergenic
TTTATTGGTGGGAAAAGAAA+AGG 0.364765 1.4:-20191629 MS.gene026309:CDS
TAAGGAGAAAGATACTTATT+CGG 0.369735 1.4:-20191342 MS.gene026309:CDS
TAATATGTTGGCTCCAAAAT+CGG 0.397853 1.4:+20191826 None:intergenic
CTTTGCAAGTTGGTTGATTG+TGG 0.403002 1.4:-20191551 MS.gene026309:CDS
ACCCAACATCACTTCCATTC+GGG 0.422139 1.4:+20191186 None:intergenic
TTTGCAAGTTGGTTGATTGT+GGG 0.424528 1.4:-20191550 MS.gene026309:CDS
TAAGCACTTCCATTGGTTGA+TGG 0.433760 1.4:+20191510 None:intergenic
AACCCAACATCACTTCCATT+CGG 0.447585 1.4:+20191185 None:intergenic
AACAGTTGAACGACAACCTT+GGG 0.449885 1.4:-20191768 MS.gene026309:CDS
GAATAAGTATCTTTCTCCTT+AGG 0.450856 1.4:+20191344 None:intergenic
GGTGGGAAAAGAAAAGGGTT+AGG 0.452157 1.4:-20191623 MS.gene026309:CDS
GCTGTTGATGTTGCACTTCA+AGG 0.452646 1.4:-20191155 MS.gene026309:CDS
ATGATTGAGGAGGTGTTAAT+GGG 0.454804 1.4:-20191281 MS.gene026309:CDS
ACCCGAATGGAAGTGATGTT+GGG 0.466760 1.4:-20191187 MS.gene026309:CDS
AAAGAAGAGTAATATGATTG+AGG 0.481487 1.4:-20191294 MS.gene026309:CDS
AGCCATTGTTCTTCACATAA+GGG 0.484383 1.4:+20192167 None:intergenic
AAAATGCGTGAGGTTGTGAT+TGG 0.487547 1.4:-20191236 MS.gene026309:CDS
TTATTGGTGGGAAAAGAAAA+GGG 0.491095 1.4:-20191628 MS.gene026309:CDS
GGATGAAAATACGACGGGTA+AGG 0.495809 1.4:+20191722 None:intergenic
TGCAAGTTGGTTGATTGTGG+GGG 0.509533 1.4:-20191548 MS.gene026309:CDS
TGTGATTGGTTTGATCCCTA+GGG 0.510208 1.4:-20191222 MS.gene026309:CDS
CACCCGAATGGAAGTGATGT+TGG 0.518128 1.4:-20191188 MS.gene026309:CDS
CTATTCTACATACCATTCTA+CGG 0.525739 1.4:-20192025 MS.gene026309:CDS
GATTTCATGCGGTCCTCAAG+TGG 0.526085 1.4:-20191851 MS.gene026309:CDS
TGAGTCATCTCTTTGCAAGT+TGG 0.526643 1.4:-20191561 MS.gene026309:CDS
ATCGATTAGATCAACGGCTA+GGG 0.530004 1.4:+20191949 None:intergenic
TATTCGGTTTATATTGAAGA+GGG 0.531841 1.4:-20191326 MS.gene026309:CDS
GTTAGTTATGCGCACCCGAA+TGG 0.531970 1.4:-20191200 MS.gene026309:CDS
TCCAAAATCGGACCCACTTG+AGG 0.536553 1.4:+20191838 None:intergenic
TATGTGAAGAACAATGGCTT+AGG 0.537393 1.4:-20192163 MS.gene026309:CDS
GCGTGTAGTCCACCGTAGAA+TGG 0.538340 1.4:+20192013 None:intergenic
ATAACACTAAGCACTTCCAT+TGG 0.539587 1.4:+20191503 None:intergenic
ATACCATTGGTATTTGCCTA+AGG 0.541550 1.4:-20191360 MS.gene026309:CDS
TTCGGTTTATATTGAAGAGG+GGG 0.546993 1.4:-20191324 MS.gene026309:CDS
ATGTACAAAGTCTACCTTGG+TGG 0.552088 1.4:-20191925 MS.gene026309:CDS
TTTCTCTGGGAAGGACCGCA+TGG 0.552309 1.4:-20191874 MS.gene026309:CDS
TACATGATCGATTAGATCAA+CGG 0.552809 1.4:+20191943 None:intergenic
AAAATCACGTGTGTCGCACG+TGG 0.553844 1.4:-20192066 MS.gene026309:CDS
TCTCCTTAGGCAAATACCAA+TGG 0.555859 1.4:+20191357 None:intergenic
GTGGGAAAAGAAAAGGGTTA+GGG 0.560862 1.4:-20191622 MS.gene026309:CDS
TGGGAAGGTTATAATCAAAA+CGG 0.566648 1.4:-20191749 MS.gene026309:CDS
TTGCAAGTTGGTTGATTGTG+GGG 0.567948 1.4:-20191549 MS.gene026309:CDS
TTCTCTGGGAAGGACCGCAT+GGG 0.570266 1.4:-20191873 MS.gene026309:CDS
TAACAGTTGAACGACAACCT+TGG 0.570721 1.4:-20191769 MS.gene026309:CDS
GTTAATGGGAATTAAGGAGG+TGG 0.571636 1.4:-20191267 MS.gene026309:CDS
ATAAAATGAGACAAAACGAC+AGG 0.573735 1.4:-20191667 MS.gene026309:CDS
GATCGATTAGATCAACGGCT+AGG 0.575788 1.4:+20191948 None:intergenic
TGGTAGGTTTAATAATATGT+TGG 0.579142 1.4:+20191814 None:intergenic
CAGCGTATACGCAATACCAT+TGG 0.583630 1.4:-20191373 MS.gene026309:CDS
GAAGAGTAATATGATTGAGG+AGG 0.587479 1.4:-20191291 MS.gene026309:CDS
GGGTGCGCATAACTAACCCT+AGG 0.588239 1.4:+20191206 None:intergenic
TAGTAAATGCCATCAACCAA+TGG 0.589401 1.4:-20191519 MS.gene026309:CDS
CAAAAGAAGAAATGCTGACG+TGG 0.592552 1.4:-20191694 MS.gene026309:CDS
TCGGTTTATATTGAAGAGGG+GGG 0.595261 1.4:-20191323 MS.gene026309:CDS
ATTTCATGCGGTCCTCAAGT+GGG 0.605471 1.4:-20191850 MS.gene026309:CDS
ATCATGTACAAAGTCTACCT+TGG 0.607581 1.4:-20191928 MS.gene026309:CDS
CTTCTAGTAAAAGAATCACC+TGG 0.626474 1.4:+20191452 None:intergenic
GGTGCGCATAACTAACCCTA+GGG 0.632069 1.4:+20191207 None:intergenic
ATTCGGTTTATATTGAAGAG+GGG 0.633941 1.4:-20191325 MS.gene026309:CDS
TTATTCGGTTTATATTGAAG+AGG 0.635875 1.4:-20191327 MS.gene026309:CDS
GTTGAACGACAACCTTGGGA+AGG 0.641260 1.4:-20191764 MS.gene026309:CDS
CCTTGGTGGAATCGTCACAA+TGG 0.642551 1.4:-20191911 MS.gene026309:CDS
GGTGTTAATGGGAATTAAGG+AGG 0.648081 1.4:-20191270 MS.gene026309:CDS
GGAGAGTGTGATTCGCCTCG+CGG 0.649710 1.4:+20191978 None:intergenic
TATTGCGTATACGCTGTATG+TGG 0.654666 1.4:+20191380 None:intergenic
CGCTTCAAGCATGTTCCGCG+AGG 0.663884 1.4:-20191993 MS.gene026309:CDS
AAATCACGTGTGTCGCACGT+GGG 0.664225 1.4:-20192065 MS.gene026309:CDS
GGACCGCATGGGATTTCATG+CGG 0.671183 1.4:-20191862 MS.gene026309:CDS
TGCCCTTATGTGAAGAACAA+TGG 0.674537 1.4:-20192169 MS.gene026309:CDS
TTCTACATACCATTCTACGG+TGG 0.700629 1.4:-20192022 MS.gene026309:CDS
CCATTGTGACGATTCCACCA+AGG 0.717299 1.4:+20191911 None:intergenic
GATCAACGGCTAGGGCATCG+CGG 0.732029 1.4:+20191957 None:intergenic
GGACCGCATGAAATCCCATG+CGG 0.771513 1.4:+20191859 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CCAATAAATGAAAACAAAAA+CGG + chr1.4:20191646-20191665 None:intergenic 20.0%
!!! AAAGATCATTTTATTTCTCT+GGG - chr1.4:20191400-20191419 MS.gene026309:CDS 20.0%
!!! TAAAGATCATTTTATTTCTC+TGG - chr1.4:20191399-20191418 MS.gene026309:CDS 20.0%
!!! TTTTGTTTTCATTTATTGGT+GGG - chr1.4:20191647-20191666 MS.gene026309:CDS 20.0%
!!! TTTTTGTTTTCATTTATTGG+TGG - chr1.4:20191646-20191665 MS.gene026309:CDS 20.0%
! AAAGAAGAGTAATATGATTG+AGG - chr1.4:20191993-20192012 MS.gene026309:CDS 25.0%
! AAATCATTTCTGCTAAGAAT+TGG + chr1.4:20191186-20191205 None:intergenic 25.0%
! TAAGGAGAAAGATACTTATT+CGG - chr1.4:20191945-20191964 MS.gene026309:CDS 25.0%
! TAGAATAGAATTGCTTGATT+TGG + chr1.4:20191250-20191269 None:intergenic 25.0%
! TATTCGGTTTATATTGAAGA+GGG - chr1.4:20191961-20191980 MS.gene026309:CDS 25.0%
! TGGTAGGTTTAATAATATGT+TGG + chr1.4:20191476-20191495 None:intergenic 25.0%
! TTATTCGGTTTATATTGAAG+AGG - chr1.4:20191960-20191979 MS.gene026309:CDS 25.0%
!!! AGCATTTCTTCTTTTGTTTT+TGG + chr1.4:20191589-20191608 None:intergenic 25.0%
!!! CCGTTTTTGTTTTCATTTAT+TGG - chr1.4:20191643-20191662 MS.gene026309:CDS 25.0%
ATAAAATGAGACAAAACGAC+AGG - chr1.4:20191620-20191639 MS.gene026309:CDS 30.0%
ATTCGGTTTATATTGAAGAG+GGG - chr1.4:20191962-20191981 MS.gene026309:CDS 30.0%
CTATTCTACATACCATTCTA+CGG - chr1.4:20191262-20191281 MS.gene026309:CDS 30.0%
GAATAAGTATCTTTCTCCTT+AGG + chr1.4:20191946-20191965 None:intergenic 30.0%
TACATGATCGATTAGATCAA+CGG + chr1.4:20191347-20191366 None:intergenic 30.0%
TGGGAAGGTTATAATCAAAA+CGG - chr1.4:20191538-20191557 MS.gene026309:CDS 30.0%
TTATTGGTGGGAAAAGAAAA+GGG - chr1.4:20191659-20191678 MS.gene026309:CDS 30.0%
TTTATTGGTGGGAAAAGAAA+AGG - chr1.4:20191658-20191677 MS.gene026309:CDS 30.0%
! TTTTTGGATGAAAATACGAC+GGG + chr1.4:20191573-20191592 None:intergenic 30.0%
!! ATCATTTTATTTCTCTGGGA+AGG - chr1.4:20191404-20191423 MS.gene026309:CDS 30.0%
!! GTTTTTGGATGAAAATACGA+CGG + chr1.4:20191574-20191593 None:intergenic 30.0%
!! TAATATGTTGGCTCCAAAAT+CGG + chr1.4:20191464-20191483 None:intergenic 30.0%
!! TTTTGATTATAACCTTCCCA+AGG + chr1.4:20191538-20191557 None:intergenic 30.0%
AAGCCATTGTTCTTCACATA+AGG + chr1.4:20191124-20191143 None:intergenic 35.0%
AGCCATTGTTCTTCACATAA+GGG + chr1.4:20191123-20191142 None:intergenic 35.0%
ATAACACTAAGCACTTCCAT+TGG + chr1.4:20191787-20191806 None:intergenic 35.0%
ATACCATTGGTATTTGCCTA+AGG - chr1.4:20191927-20191946 MS.gene026309:CDS 35.0%
ATCATGTACAAAGTCTACCT+TGG - chr1.4:20191359-20191378 MS.gene026309:CDS 35.0%
CTTCTAGTAAAAGAATCACC+TGG + chr1.4:20191838-20191857 None:intergenic 35.0%
GAAGAGTAATATGATTGAGG+AGG - chr1.4:20191996-20192015 MS.gene026309:CDS 35.0%
GTATGTGGAGAGAAAAATAC+AGG + chr1.4:20191895-20191914 None:intergenic 35.0%
TAGTAAATGCCATCAACCAA+TGG - chr1.4:20191768-20191787 MS.gene026309:CDS 35.0%
TATGTGAAGAACAATGGCTT+AGG - chr1.4:20191124-20191143 MS.gene026309:CDS 35.0%
TTCGGTTTATATTGAAGAGG+GGG - chr1.4:20191963-20191982 MS.gene026309:CDS 35.0%
TTGCACTTCAAGGAATTTCT+AGG - chr1.4:20192142-20192161 MS.gene026309:CDS 35.0%
! CAGAAATGATTTTCCATGCT+AGG - chr1.4:20191194-20191213 MS.gene026309:CDS 35.0%
! CAGGTGATTCTTTTACTAGA+AGG - chr1.4:20191836-20191855 MS.gene026309:CDS 35.0%
!! AATTTCTAGGCTTTTGTTCG+AGG - chr1.4:20192155-20192174 MS.gene026309:CDS 35.0%
!! ACTTTTGACTCTATACTTGC+TGG - chr1.4:20191862-20191881 MS.gene026309:CDS 35.0%
!! ATGATTGAGGAGGTGTTAAT+GGG - chr1.4:20192006-20192025 MS.gene026309:CDS 35.0%
!! GGAAGTGCTTAGTGTTATAA+TGG - chr1.4:20191789-20191808 MS.gene026309:CDS 35.0%
!! GTACCATGATGTTTTTGAGA+GGG + chr1.4:20191155-20191174 None:intergenic 35.0%
!! TACCATGATGTTTTTGAGAG+GGG + chr1.4:20191154-20191173 None:intergenic 35.0%
!! TATGATTGAGGAGGTGTTAA+TGG - chr1.4:20192005-20192024 MS.gene026309:CDS 35.0%
!! TGTACCATGATGTTTTTGAG+AGG + chr1.4:20191156-20191175 None:intergenic 35.0%
!! TTTGCAAGTTGGTTGATTGT+GGG - chr1.4:20191737-20191756 MS.gene026309:CDS 35.0%
AAAATGCGTGAGGTTGTGAT+TGG - chr1.4:20192051-20192070 MS.gene026309:CDS 40.0%
AACAGTTGAACGACAACCTT+GGG - chr1.4:20191519-20191538 MS.gene026309:CDS 40.0%
AACCCAACATCACTTCCATT+CGG + chr1.4:20192105-20192124 None:intergenic 40.0%
AACCCCTCTCAAAAACATCA+TGG - chr1.4:20191149-20191168 MS.gene026309:CDS 40.0%
ACCACCTGTCAAAAACATGT+CGG - chr1.4:20191492-20191511 MS.gene026309:CDS 40.0%
ATCGATTAGATCAACGGCTA+GGG + chr1.4:20191341-20191360 None:intergenic 40.0%
ATGGAAGTGATGTTGGGTTT+AGG - chr1.4:20192106-20192125 MS.gene026309:CDS 40.0%
ATGTACAAAGTCTACCTTGG+TGG - chr1.4:20191362-20191381 MS.gene026309:CDS 40.0%
CAAAAGAAGAAATGCTGACG+TGG - chr1.4:20191593-20191612 MS.gene026309:CDS 40.0%
GGAAGTTGAAAAAATGCGTG+AGG - chr1.4:20192041-20192060 MS.gene026309:CDS 40.0%
GGTGTTAATGGGAATTAAGG+AGG - chr1.4:20192017-20192036 MS.gene026309:CDS 40.0%
GTGGGAAAAGAAAAGGGTTA+GGG - chr1.4:20191665-20191684 MS.gene026309:CDS 40.0%
GTTAATGGGAATTAAGGAGG+TGG - chr1.4:20192020-20192039 MS.gene026309:CDS 40.0%
TAACAGTTGAACGACAACCT+TGG - chr1.4:20191518-20191537 MS.gene026309:CDS 40.0%
TATTGCGTATACGCTGTATG+TGG + chr1.4:20191910-20191929 None:intergenic 40.0%
TCGGTTTATATTGAAGAGGG+GGG - chr1.4:20191964-20191983 MS.gene026309:CDS 40.0%
TCTCCTTAGGCAAATACCAA+TGG + chr1.4:20191933-20191952 None:intergenic 40.0%
TGAGTCATCTCTTTGCAAGT+TGG - chr1.4:20191726-20191745 MS.gene026309:CDS 40.0%
TGCCCTTATGTGAAGAACAA+TGG - chr1.4:20191118-20191137 MS.gene026309:CDS 40.0%
TGGAAGTGATGTTGGGTTTA+GGG - chr1.4:20192107-20192126 MS.gene026309:CDS 40.0%
TTCTACATACCATTCTACGG+TGG - chr1.4:20191265-20191284 MS.gene026309:CDS 40.0%
! CGTGATTTTCTAACCTAGCA+TGG + chr1.4:20191210-20191229 None:intergenic 40.0%
! TAAGCACTTCCATTGGTTGA+TGG + chr1.4:20191780-20191799 None:intergenic 40.0%
!! ACATGTTTTTGACAGGTGGT+AGG + chr1.4:20191492-20191511 None:intergenic 40.0%
!! CTTTGCAAGTTGGTTGATTG+TGG - chr1.4:20191736-20191755 MS.gene026309:CDS 40.0%
!! GGAGGTGTTAATGGGAATTA+AGG - chr1.4:20192014-20192033 MS.gene026309:CDS 40.0%
!! TGTGATTGGTTTGATCCCTA+GGG - chr1.4:20192065-20192084 MS.gene026309:CDS 40.0%
!! TTGCAAGTTGGTTGATTGTG+GGG - chr1.4:20191738-20191757 MS.gene026309:CDS 40.0%
!! TTGTGATTGGTTTGATCCCT+AGG - chr1.4:20192064-20192083 MS.gene026309:CDS 40.0%
ACCCAACATCACTTCCATTC+GGG + chr1.4:20192104-20192123 None:intergenic 45.0%
ACCCGAATGGAAGTGATGTT+GGG - chr1.4:20192100-20192119 MS.gene026309:CDS 45.0%
ATTTCATGCGGTCCTCAAGT+GGG - chr1.4:20191437-20191456 MS.gene026309:CDS 45.0%
CAGCGTATACGCAATACCAT+TGG - chr1.4:20191914-20191933 MS.gene026309:CDS 45.0%
GATCGATTAGATCAACGGCT+AGG + chr1.4:20191342-20191361 None:intergenic 45.0%
GCTGTTGATGTTGCACTTCA+AGG - chr1.4:20192132-20192151 MS.gene026309:CDS 45.0%
GGATGAAAATACGACGGGTA+AGG + chr1.4:20191568-20191587 None:intergenic 45.0%
GGTGGGAAAAGAAAAGGGTT+AGG - chr1.4:20191664-20191683 MS.gene026309:CDS 45.0%
! CGTTTTTGTCTTCAAGCACC+AGG - chr1.4:20191817-20191836 MS.gene026309:CDS 45.0%
! TATATTGAAGAGGGGGGTGT+AGG - chr1.4:20191970-20191989 MS.gene026309:CDS 45.0%
!! ACCGACATGTTTTTGACAGG+TGG + chr1.4:20191496-20191515 None:intergenic 45.0%
!! TGCAAGTTGGTTGATTGTGG+GGG - chr1.4:20191739-20191758 MS.gene026309:CDS 45.0%
!!! AGCACCGACATGTTTTTGAC+AGG + chr1.4:20191499-20191518 None:intergenic 45.0%
AAAATCACGTGTGTCGCACG+TGG - chr1.4:20191221-20191240 MS.gene026309:CDS 50.0%
AAATCACGTGTGTCGCACGT+GGG - chr1.4:20191222-20191241 MS.gene026309:CDS 50.0%
AGTTGGTTGATTGTGGGGGT+GGG - chr1.4:20191743-20191762 MS.gene026309:CDS 50.0%
CACCCGAATGGAAGTGATGT+TGG - chr1.4:20192099-20192118 MS.gene026309:CDS 50.0%
CCATTGTGACGATTCCACCA+AGG + chr1.4:20191379-20191398 None:intergenic 50.0%
CCTTGGTGGAATCGTCACAA+TGG - chr1.4:20191376-20191395 MS.gene026309:CDS 50.0%
GATTTCATGCGGTCCTCAAG+TGG - chr1.4:20191436-20191455 MS.gene026309:CDS 50.0%
GGTGCGCATAACTAACCCTA+GGG + chr1.4:20192083-20192102 None:intergenic 50.0%
GTTAGTTATGCGCACCCGAA+TGG - chr1.4:20192087-20192106 MS.gene026309:CDS 50.0%
GTTGAACGACAACCTTGGGA+AGG - chr1.4:20191523-20191542 MS.gene026309:CDS 50.0%
TCCAAAATCGGACCCACTTG+AGG + chr1.4:20191452-20191471 None:intergenic 50.0%
! AAGTTGGTTGATTGTGGGGG+TGG - chr1.4:20191742-20191761 MS.gene026309:CDS 50.0%
! TCCTCAAGTGGGTCCGATTT+TGG - chr1.4:20191448-20191467 MS.gene026309:CDS 50.0%
GCGTGTAGTCCACCGTAGAA+TGG + chr1.4:20191277-20191296 None:intergenic 55.0%
GGACCGCATGAAATCCCATG+CGG + chr1.4:20191431-20191450 None:intergenic 55.0%
GGACCGCATGGGATTTCATG+CGG - chr1.4:20191425-20191444 MS.gene026309:CDS 55.0%
GGGTGCGCATAACTAACCCT+AGG + chr1.4:20192084-20192103 None:intergenic 55.0%
! TTCTCTGGGAAGGACCGCAT+GGG - chr1.4:20191414-20191433 MS.gene026309:CDS 55.0%
! TTTCTCTGGGAAGGACCGCA+TGG - chr1.4:20191413-20191432 MS.gene026309:CDS 55.0%
CGCTTCAAGCATGTTCCGCG+AGG - chr1.4:20191294-20191313 MS.gene026309:CDS 60.0%
! GGAGAGTGTGATTCGCCTCG+CGG + chr1.4:20191312-20191331 None:intergenic 60.0%
!! GATCAACGGCTAGGGCATCG+CGG + chr1.4:20191333-20191352 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 20191115 20192194 20191115 ID=MS.gene026309
chr1.4 mRNA 20191115 20192194 20191115 ID=MS.gene026309.t1;Parent=MS.gene026309
chr1.4 exon 20191115 20192194 20191115 ID=MS.gene026309.t1.exon1;Parent=MS.gene026309.t1
chr1.4 CDS 20191115 20192194 20191115 ID=cds.MS.gene026309.t1;Parent=MS.gene026309.t1
Gene Sequence

>MS.gene026309

ATGTGCCCTTATGTGAAGAACAATGGCTTAGGTCAACCCCTCTCAAAAACATCATGGTACACAACACACCAATTCTTAGCAGAAATGATTTTCCATGCTAGGTTAGAAAATCACGTGTGTCGCACGTGGGATCCAAATCAAGCAATTCTATTCTACATACCATTCTACGGTGGACTACACGCTTCAAGCATGTTCCGCGAGGCGAATCACACTCTCCGCGATGCCCTAGCCGTTGATCTAATCGATCATGTACAAAGTCTACCTTGGTGGAATCGTCACAATGGTAAAGATCATTTTATTTCTCTGGGAAGGACCGCATGGGATTTCATGCGGTCCTCAAGTGGGTCCGATTTTGGAGCCAACATATTATTAAACCTACCACCTGTCAAAAACATGTCGGTGCTAACAGTTGAACGACAACCTTGGGAAGGTTATAATCAAAACGGCATACCTTACCCGTCGTATTTTCATCCAAAAACAAAAGAAGAAATGCTGACGTGGCAGAATAAAATGAGACAAAACGACAGGCCGTTTTTGTTTTCATTTATTGGTGGGAAAAGAAAAGGGTTAGGGAAAGCAAAGATTCGTGATGAGTTGTTTAAACAATGTAATGAGTCATCTCTTTGCAAGTTGGTTGATTGTGGGGGTGGGAATAGTAAATGCCATCAACCAATGGAAGTGCTTAGTGTTATAATGGAGTCACGTTTTTGTCTTCAAGCACCAGGTGATTCTTTTACTAGAAGGTCAACTTTTGACTCTATACTTGCTGGTTGTATACCTGTATTTTTCTCTCCACATACAGCGTATACGCAATACCATTGGTATTTGCCTAAGGAGAAAGATACTTATTCGGTTTATATTGAAGAGGGGGGTGTAGGAAAGAAGAGTAATATGATTGAGGAGGTGTTAATGGGAATTAAGGAGGTGGAAGTTGAAAAAATGCGTGAGGTTGTGATTGGTTTGATCCCTAGGGTTAGTTATGCGCACCCGAATGGAAGTGATGTTGGGTTTAGGGATGCTGTTGATGTTGCACTTCAAGGAATTTCTAGGCTTTTGTTCGAGGAAACATTGAGATTGTAG
Protein sequence

>MS.gene026309.t1

MCPYVKNNGLGQPLSKTSWYTTHQFLAEMIFHARLENHVCRTWDPNQAILFYIPFYGGLHASSMFREANHTLRDALAVDLIDHVQSLPWWNRHNGKDHFISLGRTAWDFMRSSSGSDFGANILLNLPPVKNMSVLTVERQPWEGYNQNGIPYPSYFHPKTKEEMLTWQNKMRQNDRPFLFSFIGGKRKGLGKAKIRDELFKQCNESSLCKLVDCGGGNSKCHQPMEVLSVIMESRFCLQAPGDSFTRRSTFDSILAGCIPVFFSPHTAYTQYHWYLPKEKDTYSVYIEEGGVGKKSNMIEEVLMGIKEVEVEKMREVVIGLIPRVSYAHPNGSDVGFRDAVDVALQGISRLLFEETLRL