Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79900.t1 | XP_003601693.1 | 98.2 | 387 | 7 | 0 | 1 | 387 | 98 | 484 | 1.00E-230 | 808.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79900.t1 | Q84R16 | 57.0 | 388 | 163 | 3 | 1 | 387 | 128 | 512 | 3.9e-130 | 466.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79900.t1 | G7JAS7 | 98.2 | 387 | 7 | 0 | 1 | 387 | 98 | 484 | 7.3e-231 | 808.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050807 | MS.gene79900 | 0.814811 | 1.27E-51 | -1.69E-46 |
| MS.gene050959 | MS.gene79900 | 0.814519 | 1.48E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene79900 | 0.823122 | 1.64E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene79900 | 0.811728 | 6.06E-51 | -1.69E-46 |
| MS.gene052732 | MS.gene79900 | 0.818672 | 1.73E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene79900 | 0.826352 | 2.84E-54 | -1.69E-46 |
| MS.gene053174 | MS.gene79900 | 0.80199 | 6.94E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene79900 | 0.807568 | 4.74E-50 | -1.69E-46 |
| MS.gene054550 | MS.gene79900 | 0.803886 | 2.81E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene79900 | 0.814365 | 1.60E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene79900 | 0.814242 | 1.70E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene79900 | 0.815311 | 9.86E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene79900 | 0.816058 | 6.73E-52 | -1.69E-46 |
| MS.gene055890 | MS.gene79900 | 0.811644 | 6.32E-51 | -1.69E-46 |
| MS.gene055891 | MS.gene79900 | 0.813846 | 2.08E-51 | -1.69E-46 |
| MS.gene056584 | MS.gene79900 | 0.808036 | 3.77E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene79900 | 0.805908 | 1.06E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene79900 | 0.800964 | 1.13E-48 | -1.69E-46 |
| MS.gene060884 | MS.gene79900 | 0.809654 | 1.70E-50 | -1.69E-46 |
| MS.gene060886 | MS.gene79900 | 0.804364 | 2.24E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene58506 | MS.gene79900 | PPI |
| MS.gene79900 | MS.gene026309 | PPI |
| MS.gene035337 | MS.gene79900 | PPI |
| MS.gene79900 | MS.gene041562 | PPI |
| MS.gene79900 | MS.gene32944 | PPI |
| MS.gene79900 | MS.gene32945 | PPI |
| MS.gene79900 | MS.gene036481 | PPI |
| MS.gene79900 | MS.gene067185 | PPI |
| MS.gene79900 | MS.gene001404 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79900.t1 | MTR_3g084400 | 98.191 | 387 | 7 | 0 | 1 | 387 | 98 | 484 | 0.0 | 799 |
| MS.gene79900.t1 | MTR_7g098650 | 55.039 | 387 | 169 | 3 | 1 | 386 | 110 | 492 | 2.39e-160 | 461 |
| MS.gene79900.t1 | MTR_1g069460 | 53.230 | 387 | 176 | 3 | 1 | 386 | 185 | 567 | 3.17e-156 | 453 |
| MS.gene79900.t1 | MTR_4g129930 | 55.890 | 365 | 158 | 2 | 1 | 363 | 102 | 465 | 3.68e-154 | 443 |
| MS.gene79900.t1 | MTR_5g055350 | 52.432 | 370 | 163 | 4 | 1 | 363 | 83 | 446 | 1.40e-145 | 420 |
| MS.gene79900.t1 | MTR_5g095940 | 52.151 | 372 | 172 | 3 | 1 | 367 | 125 | 495 | 1.96e-139 | 406 |
| MS.gene79900.t1 | MTR_3g007840 | 50.000 | 376 | 159 | 4 | 1 | 371 | 53 | 404 | 1.50e-131 | 384 |
| MS.gene79900.t1 | MTR_5g095950 | 46.809 | 376 | 163 | 4 | 1 | 371 | 98 | 441 | 2.98e-119 | 355 |
| MS.gene79900.t1 | MTR_1g035730 | 42.340 | 359 | 194 | 3 | 1 | 356 | 103 | 451 | 9.73e-95 | 291 |
| MS.gene79900.t1 | MTR_1g102430 | 42.779 | 367 | 194 | 9 | 2 | 360 | 132 | 490 | 1.74e-90 | 281 |
| MS.gene79900.t1 | MTR_5g010370 | 39.674 | 368 | 205 | 7 | 2 | 364 | 192 | 547 | 1.95e-88 | 277 |
| MS.gene79900.t1 | MTR_5g010350 | 40.379 | 369 | 201 | 8 | 2 | 364 | 168 | 523 | 1.48e-83 | 264 |
| MS.gene79900.t1 | MTR_4g119810 | 38.281 | 384 | 204 | 10 | 1 | 361 | 73 | 446 | 5.81e-79 | 250 |
| MS.gene79900.t1 | MTR_4g077920 | 23.630 | 292 | 184 | 12 | 89 | 370 | 155 | 417 | 4.91e-11 | 64.3 |
| MS.gene79900.t1 | MTR_4g077920 | 23.630 | 292 | 184 | 12 | 89 | 370 | 213 | 475 | 5.89e-11 | 64.3 |
| MS.gene79900.t1 | MTR_4g077920 | 27.174 | 184 | 117 | 7 | 89 | 269 | 213 | 382 | 9.94e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79900.t1 | AT4G13990 | 66.237 | 388 | 127 | 3 | 1 | 387 | 128 | 512 | 0.0 | 548 |
| MS.gene79900.t1 | AT4G13990 | 66.237 | 388 | 127 | 3 | 1 | 387 | 128 | 512 | 0.0 | 548 |
| MS.gene79900.t1 | AT2G20370 | 53.230 | 387 | 177 | 2 | 1 | 386 | 182 | 565 | 3.92e-158 | 459 |
| MS.gene79900.t1 | AT2G32750 | 53.600 | 375 | 168 | 3 | 1 | 371 | 114 | 486 | 2.11e-149 | 432 |
| MS.gene79900.t1 | AT2G32750 | 53.600 | 375 | 168 | 3 | 1 | 371 | 116 | 488 | 2.25e-149 | 432 |
| MS.gene79900.t1 | AT2G29040 | 53.213 | 389 | 171 | 4 | 1 | 384 | 330 | 712 | 5.54e-145 | 429 |
| MS.gene79900.t1 | AT2G31990 | 52.561 | 371 | 164 | 7 | 1 | 363 | 114 | 480 | 3.11e-139 | 405 |
| MS.gene79900.t1 | AT2G31990 | 52.561 | 371 | 164 | 7 | 1 | 363 | 106 | 472 | 3.75e-139 | 405 |
| MS.gene79900.t1 | AT2G31990 | 52.547 | 373 | 161 | 8 | 1 | 363 | 152 | 518 | 1.17e-138 | 405 |
| MS.gene79900.t1 | AT2G32740 | 50.000 | 364 | 175 | 4 | 2 | 359 | 98 | 460 | 3.59e-131 | 384 |
| MS.gene79900.t1 | AT5G41250 | 41.989 | 362 | 194 | 6 | 1 | 359 | 208 | 556 | 3.69e-96 | 298 |
| MS.gene79900.t1 | AT1G68470 | 41.274 | 361 | 196 | 5 | 1 | 358 | 99 | 446 | 6.59e-95 | 291 |
| MS.gene79900.t1 | AT5G62220 | 40.437 | 366 | 204 | 8 | 2 | 360 | 150 | 508 | 1.65e-90 | 282 |
| MS.gene79900.t1 | AT1G63450 | 42.000 | 350 | 194 | 7 | 15 | 359 | 315 | 660 | 3.21e-87 | 278 |
| MS.gene79900.t1 | AT4G22580 | 39.037 | 374 | 203 | 10 | 1 | 359 | 68 | 431 | 8.50e-81 | 254 |
Find 73 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGATGATTTGGCTTATT+GGG | 0.218270 | 3.1:-65328250 | MS.gene79900:CDS |
| AATTTGATGATTTGGCTTAT+TGG | 0.229453 | 3.1:-65328251 | MS.gene79900:CDS |
| TAGAAGACAATTTGATGATT+TGG | 0.240067 | 3.1:-65328259 | MS.gene79900:CDS |
| GTGTTCTCTTTGCAACCTTC+TGG | 0.263061 | 3.1:-65327892 | MS.gene79900:CDS |
| CTTATTGGGGTAGTAAGTTT+AGG | 0.286674 | 3.1:-65328236 | MS.gene79900:CDS |
| AACACCTTCATAACATTAAC+AGG | 0.333473 | 3.1:+65327925 | None:intergenic |
| TTATTTCTGGAAGAATTTCT+TGG | 0.334479 | 3.1:-65328287 | MS.gene79900:CDS |
| GTAGCATACCAAGTATTGTT+TGG | 0.367244 | 3.1:+65328543 | None:intergenic |
| ATAAACAGAATACTTAGTTC+TGG | 0.368563 | 3.1:+65327759 | None:intergenic |
| TAGCATACCAAGTATTGTTT+GGG | 0.381452 | 3.1:+65328544 | None:intergenic |
| GTTAATGTTATGAAGGTGTT+TGG | 0.381876 | 3.1:-65327922 | MS.gene79900:CDS |
| AAATAACCTCCAACAGAAAC+TGG | 0.384297 | 3.1:+65328517 | None:intergenic |
| TTGAAAGGATTGAGAATGTA+AGG | 0.389756 | 3.1:-65327549 | MS.gene79900:CDS |
| AACTTCATTTCATCCTTCAA+TGG | 0.405756 | 3.1:-65328133 | MS.gene79900:CDS |
| TATTTCTGGAAGAATTTCTT+GGG | 0.408231 | 3.1:-65328286 | MS.gene79900:CDS |
| AAATTCATTGATTGTAGTTA+TGG | 0.414533 | 3.1:-65327967 | MS.gene79900:CDS |
| ATTGACATATTCATAGATTC+AGG | 0.419427 | 3.1:+65328207 | None:intergenic |
| TACATGGACAACATGGGTTT+AGG | 0.430952 | 3.1:-65328606 | MS.gene79900:CDS |
| GTAAGGGAAACAATGAGAAA+AGG | 0.431105 | 3.1:-65327532 | MS.gene79900:CDS |
| AAAACATCATTATCCATTGA+AGG | 0.431263 | 3.1:+65328120 | None:intergenic |
| TTCTTGTCCCAAACAATACT+TGG | 0.433179 | 3.1:-65328551 | MS.gene79900:CDS |
| GTAAAATTAGACATCAAAAG+AGG | 0.433677 | 3.1:-65328086 | MS.gene79900:CDS |
| CATTGAAAGGGATGCTTGAA+AGG | 0.434984 | 3.1:-65327564 | MS.gene79900:CDS |
| TAGCAGTTGAAGGTAGTTCA+TGG | 0.438552 | 3.1:-65328182 | MS.gene79900:CDS |
| TAAGGGAAACAATGAGAAAA+GGG | 0.440498 | 3.1:-65327531 | MS.gene79900:CDS |
| CTGAAAATGAAGATTCACTT+AGG | 0.454464 | 3.1:-65328029 | MS.gene79900:CDS |
| ATTGCAATAACCTCCTTCTC+TGG | 0.454824 | 3.1:+65327676 | None:intergenic |
| TGAAAATGAAGATTCACTTA+GGG | 0.470090 | 3.1:-65328028 | MS.gene79900:CDS |
| CATTCTTTCACATCCTTCAC+AGG | 0.472787 | 3.1:+65327733 | None:intergenic |
| TACAAACCAGTTTCTGTTGG+AGG | 0.472878 | 3.1:-65328523 | MS.gene79900:CDS |
| TTGAACAGTGTCGTGGTTCG+AGG | 0.476726 | 3.1:-65327996 | MS.gene79900:CDS |
| GTGTCCGTACATGGACAACA+TGG | 0.477539 | 3.1:-65328613 | MS.gene79900:CDS |
| ATGTCAATGTTAGCAGTTGA+AGG | 0.477882 | 3.1:-65328192 | MS.gene79900:CDS |
| ACCAAACATGTGTCCGTACA+TGG | 0.478151 | 3.1:-65328622 | None:intergenic |
| CTTACTGTGAGAGATTCATC+TGG | 0.479511 | 3.1:-65328378 | MS.gene79900:CDS |
| GGATGAAATGAAGTTGGATA+AGG | 0.492206 | 3.1:+65328141 | None:intergenic |
| GCATTTGATTTAGCATTGAA+AGG | 0.493200 | 3.1:-65327577 | MS.gene79900:CDS |
| TGATCTTGAGAAGGTGTTGT+TGG | 0.496751 | 3.1:-65327704 | MS.gene79900:CDS |
| ATTGAAGGATGAAATGAAGT+TGG | 0.497621 | 3.1:+65328135 | None:intergenic |
| CATTTGATTTAGCATTGAAA+GGG | 0.501892 | 3.1:-65327576 | MS.gene79900:CDS |
| TTCATTGATTGTAGTTATGG+TGG | 0.506008 | 3.1:-65327964 | MS.gene79900:CDS |
| AAATAGTTTATGCAGATCCT+AGG | 0.507340 | 3.1:-65327624 | MS.gene79900:CDS |
| TGCTACAAACCAGTTTCTGT+TGG | 0.515202 | 3.1:-65328526 | MS.gene79900:CDS |
| AAACCCATGTTGTCCATGTA+CGG | 0.517484 | 3.1:+65328609 | None:intergenic |
| GAAAATGAAGATTCACTTAG+GGG | 0.522755 | 3.1:-65328027 | MS.gene79900:CDS |
| CTGTGAAGGATGTGAAAGAA+TGG | 0.525377 | 3.1:-65327732 | MS.gene79900:CDS |
| CAGCTTATTCACAATATAAG+TGG | 0.534716 | 3.1:-65327795 | MS.gene79900:CDS |
| TTCTGTTTATATACCTGTGA+AGG | 0.538892 | 3.1:-65327746 | MS.gene79900:CDS |
| GGTTATTGCAATGAGAGAAG+AGG | 0.546024 | 3.1:-65327665 | MS.gene79900:CDS |
| AACCTGAGTGGAAGAAAATG+TGG | 0.546802 | 3.1:-65328326 | MS.gene79900:CDS |
| AGTGGAAGAAAATGTGGGGT+AGG | 0.554745 | 3.1:-65328320 | MS.gene79900:CDS |
| AAATTATCTAACTTAGACCT+AGG | 0.558142 | 3.1:+65327607 | None:intergenic |
| AAAGGGAAAGATCCTAGTGT+TGG | 0.565330 | 3.1:-65327514 | MS.gene79900:CDS |
| GTTGTTGGCAATTCCAGAGA+AGG | 0.568274 | 3.1:-65327689 | MS.gene79900:CDS |
| TAAAATTAGACATCAAAAGA+GGG | 0.575852 | 3.1:-65328085 | MS.gene79900:CDS |
| GTGGAAGAAAATGTGGGGTA+GGG | 0.579581 | 3.1:-65328319 | MS.gene79900:CDS |
| GTGAATAAGCTGTACCAGGA+TGG | 0.582028 | 3.1:+65327806 | None:intergenic |
| ATATCAAGACCAATATAAGA+AGG | 0.583352 | 3.1:+65328426 | None:intergenic |
| TGATCCTGTTAATGTTATGA+AGG | 0.583549 | 3.1:-65327929 | MS.gene79900:CDS |
| TTTGATGATTTGGCTTATTG+GGG | 0.583833 | 3.1:-65328249 | MS.gene79900:CDS |
| ACCTGAGTGGAAGAAAATGT+GGG | 0.590852 | 3.1:-65328325 | MS.gene79900:CDS |
| GTTGGCAATTCCAGAGAAGG+AGG | 0.593293 | 3.1:-65327686 | MS.gene79900:CDS |
| TATTGTGAATAAGCTGTACC+AGG | 0.602648 | 3.1:+65327802 | None:intergenic |
| CAACATGGGTTTAGGTCCTG+AGG | 0.604586 | 3.1:-65328598 | MS.gene79900:CDS |
| TCATCTGCAAAACCAACACT+AGG | 0.607957 | 3.1:+65327502 | None:intergenic |
| TGAAAGGATTGAGAATGTAA+GGG | 0.616462 | 3.1:-65327548 | MS.gene79900:CDS |
| AAAATTATTGAACAGTGTCG+TGG | 0.616891 | 3.1:-65328003 | MS.gene79900:CDS |
| CTTGTGTATGAATCACCAGA+AGG | 0.625417 | 3.1:+65327877 | None:intergenic |
| ATGGAATGTTGATCTTGAGA+AGG | 0.656630 | 3.1:-65327713 | MS.gene79900:CDS |
| AAAATGAAGATTCACTTAGG+GGG | 0.656953 | 3.1:-65328026 | MS.gene79900:CDS |
| TGTCCGTACATGGACAACAT+GGG | 0.661617 | 3.1:-65328612 | MS.gene79900:CDS |
| TTACTTTCACTGGAGCACCA+AGG | 0.715571 | 3.1:-65328053 | MS.gene79900:CDS |
| CCTGAGTGGAAGAAAATGTG+GGG | 0.730427 | 3.1:-65328324 | MS.gene79900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGTTAAAAATCAAAACTTTA+AGG | - | chr3.1:65327512-65327531 | MS.gene79900:CDS | 20.0% |
| !! | TAAAATTAGACATCAAAAGA+GGG | - | chr3.1:65328004-65328023 | MS.gene79900:CDS | 20.0% |
| !!! | AAATTCATTGATTGTAGTTA+TGG | - | chr3.1:65328122-65328141 | MS.gene79900:CDS | 20.0% |
| !!! | ATTTTTGATTCAATTTTAGC+TGG | - | chr3.1:65328242-65328261 | MS.gene79900:CDS | 20.0% |
| ! | AAAACATCATTATCCATTGA+AGG | + | chr3.1:65327972-65327991 | None:intergenic | 25.0% |
| ! | AAATTATCTAACTTAGACCT+AGG | + | chr3.1:65328485-65328504 | None:intergenic | 25.0% |
| ! | ATAAACAGAATACTTAGTTC+TGG | + | chr3.1:65328333-65328352 | None:intergenic | 25.0% |
| ! | ATATCAAGACCAATATAAGA+AGG | + | chr3.1:65327666-65327685 | None:intergenic | 25.0% |
| ! | ATTGACATATTCATAGATTC+AGG | + | chr3.1:65327885-65327904 | None:intergenic | 25.0% |
| ! | GTAAAATTAGACATCAAAAG+AGG | - | chr3.1:65328003-65328022 | MS.gene79900:CDS | 25.0% |
| ! | TGAAAATGAAGATTCACTTA+GGG | - | chr3.1:65328061-65328080 | MS.gene79900:CDS | 25.0% |
| !! | AATTTGATGATTTGGCTTAT+TGG | - | chr3.1:65327838-65327857 | MS.gene79900:CDS | 25.0% |
| !! | ATTTGATGATTTGGCTTATT+GGG | - | chr3.1:65327839-65327858 | MS.gene79900:CDS | 25.0% |
| !! | CATTTGATTTAGCATTGAAA+GGG | - | chr3.1:65328513-65328532 | MS.gene79900:CDS | 25.0% |
| !! | GTTTTTGTTCCTTCTTATAT+TGG | - | chr3.1:65327654-65327673 | MS.gene79900:CDS | 25.0% |
| !! | TAGAAGACAATTTGATGATT+TGG | - | chr3.1:65327830-65327849 | MS.gene79900:CDS | 25.0% |
| !!! | AAGTTTTGATTTTTAACCTC+AGG | + | chr3.1:65327510-65327529 | None:intergenic | 25.0% |
| !!! | GAATTTTTGTTTACTTTCAC+TGG | - | chr3.1:65328026-65328045 | MS.gene79900:CDS | 25.0% |
| !!! | TATTTCTGGAAGAATTTCTT+GGG | - | chr3.1:65327803-65327822 | MS.gene79900:CDS | 25.0% |
| !!! | TGATATTAGTCGTTTTCTTT+GGG | - | chr3.1:65327680-65327699 | MS.gene79900:CDS | 25.0% |
| !!! | TTATTTCTGGAAGAATTTCT+TGG | - | chr3.1:65327802-65327821 | MS.gene79900:CDS | 25.0% |
| !!! | TTGATATTAGTCGTTTTCTT+TGG | - | chr3.1:65327679-65327698 | MS.gene79900:CDS | 25.0% |
| !!! | TTTTGAACTTGTTAATTGGT+TGG | - | chr3.1:65327734-65327753 | MS.gene79900:CDS | 25.0% |
| AAAATGAAGATTCACTTAGG+GGG | - | chr3.1:65328063-65328082 | MS.gene79900:CDS | 30.0% | |
| AAAATTATTGAACAGTGTCG+TGG | - | chr3.1:65328086-65328105 | MS.gene79900:CDS | 30.0% | |
| AAATAGTTTATGCAGATCCT+AGG | - | chr3.1:65328465-65328484 | MS.gene79900:CDS | 30.0% | |
| AACACCTTCATAACATTAAC+AGG | + | chr3.1:65328167-65328186 | None:intergenic | 30.0% | |
| AACTTCATTTCATCCTTCAA+TGG | - | chr3.1:65327956-65327975 | MS.gene79900:CDS | 30.0% | |
| ATTGAAGGATGAAATGAAGT+TGG | + | chr3.1:65327957-65327976 | None:intergenic | 30.0% | |
| CAGCTTATTCACAATATAAG+TGG | - | chr3.1:65328294-65328313 | MS.gene79900:CDS | 30.0% | |
| CTGAAAATGAAGATTCACTT+AGG | - | chr3.1:65328060-65328079 | MS.gene79900:CDS | 30.0% | |
| GAAAATGAAGATTCACTTAG+GGG | - | chr3.1:65328062-65328081 | MS.gene79900:CDS | 30.0% | |
| TAAGGGAAACAATGAGAAAA+GGG | - | chr3.1:65328558-65328577 | MS.gene79900:CDS | 30.0% | |
| TGAAAGGATTGAGAATGTAA+GGG | - | chr3.1:65328541-65328560 | MS.gene79900:CDS | 30.0% | |
| TGATCCTGTTAATGTTATGA+AGG | - | chr3.1:65328160-65328179 | MS.gene79900:CDS | 30.0% | |
| TTCTGTTTATATACCTGTGA+AGG | - | chr3.1:65328343-65328362 | MS.gene79900:CDS | 30.0% | |
| TTGAAAGGATTGAGAATGTA+AGG | - | chr3.1:65328540-65328559 | MS.gene79900:CDS | 30.0% | |
| ! | CTAAGTGAATCTTCATTTTC+AGG | + | chr3.1:65328062-65328081 | None:intergenic | 30.0% |
| ! | GCATTTGATTTAGCATTGAA+AGG | - | chr3.1:65328512-65328531 | MS.gene79900:CDS | 30.0% |
| ! | GGATCTGCATAAACTATTTT+TGG | + | chr3.1:65328464-65328483 | None:intergenic | 30.0% |
| ! | TAGCATACCAAGTATTGTTT+GGG | + | chr3.1:65327548-65327567 | None:intergenic | 30.0% |
| ! | TGGATAATGATGTTTTGCAA+TGG | - | chr3.1:65327976-65327995 | MS.gene79900:CDS | 30.0% |
| ! | TTCATTGATTGTAGTTATGG+TGG | - | chr3.1:65328125-65328144 | MS.gene79900:CDS | 30.0% |
| ! | TTTGATGATTTGGCTTATTG+GGG | - | chr3.1:65327840-65327859 | MS.gene79900:CDS | 30.0% |
| !! | AGGGATCATTTTCTTATTTC+TGG | - | chr3.1:65327789-65327808 | MS.gene79900:CDS | 30.0% |
| !! | GTTAATGTTATGAAGGTGTT+TGG | - | chr3.1:65328167-65328186 | MS.gene79900:CDS | 30.0% |
| !!! | CTGGTTTTGAACTTGTTAAT+TGG | - | chr3.1:65327730-65327749 | MS.gene79900:CDS | 30.0% |
| !!! | GAATACTTAGTTCTGGTTTT+TGG | + | chr3.1:65328326-65328345 | None:intergenic | 30.0% |
| !!! | TGGAGGTTATTTTTCACAAT+AGG | - | chr3.1:65327583-65327602 | MS.gene79900:CDS | 30.0% |
| AAATAACCTCCAACAGAAAC+TGG | + | chr3.1:65327575-65327594 | None:intergenic | 35.0% | |
| ATGGAATGTTGATCTTGAGA+AGG | - | chr3.1:65328376-65328395 | MS.gene79900:CDS | 35.0% | |
| ATGTCAATGTTAGCAGTTGA+AGG | - | chr3.1:65327897-65327916 | MS.gene79900:CDS | 35.0% | |
| CTTATTGGGGTAGTAAGTTT+AGG | - | chr3.1:65327853-65327872 | MS.gene79900:CDS | 35.0% | |
| GGATGAAATGAAGTTGGATA+AGG | + | chr3.1:65327951-65327970 | None:intergenic | 35.0% | |
| GTAAGGGAAACAATGAGAAA+AGG | - | chr3.1:65328557-65328576 | MS.gene79900:CDS | 35.0% | |
| TATTGTGAATAAGCTGTACC+AGG | + | chr3.1:65328290-65328309 | None:intergenic | 35.0% | |
| TTCTTGTCCCAAACAATACT+TGG | - | chr3.1:65327538-65327557 | MS.gene79900:CDS | 35.0% | |
| ! | GTAGCATACCAAGTATTGTT+TGG | + | chr3.1:65327549-65327568 | None:intergenic | 35.0% |
| AAACCCATGTTGTCCATGTA+CGG | + | chr3.1:65327483-65327502 | None:intergenic | 40.0% | |
| AAAGGGAAAGATCCTAGTGT+TGG | - | chr3.1:65328575-65328594 | MS.gene79900:CDS | 40.0% | |
| AACCTGAGTGGAAGAAAATG+TGG | - | chr3.1:65327763-65327782 | MS.gene79900:CDS | 40.0% | |
| ACCTGAGTGGAAGAAAATGT+GGG | - | chr3.1:65327764-65327783 | MS.gene79900:CDS | 40.0% | |
| ATTGCAATAACCTCCTTCTC+TGG | + | chr3.1:65328416-65328435 | None:intergenic | 40.0% | |
| CATTCTTTCACATCCTTCAC+AGG | + | chr3.1:65328359-65328378 | None:intergenic | 40.0% | |
| CATTGAAAGGGATGCTTGAA+AGG | - | chr3.1:65328525-65328544 | MS.gene79900:CDS | 40.0% | |
| CTGTGAAGGATGTGAAAGAA+TGG | - | chr3.1:65328357-65328376 | MS.gene79900:CDS | 40.0% | |
| CTTACTGTGAGAGATTCATC+TGG | - | chr3.1:65327711-65327730 | MS.gene79900:CDS | 40.0% | |
| CTTGTGTATGAATCACCAGA+AGG | + | chr3.1:65328215-65328234 | None:intergenic | 40.0% | |
| GGTTATTGCAATGAGAGAAG+AGG | - | chr3.1:65328424-65328443 | MS.gene79900:CDS | 40.0% | |
| TACAAACCAGTTTCTGTTGG+AGG | - | chr3.1:65327566-65327585 | MS.gene79900:CDS | 40.0% | |
| TACATGGACAACATGGGTTT+AGG | - | chr3.1:65327483-65327502 | MS.gene79900:CDS | 40.0% | |
| TAGCAGTTGAAGGTAGTTCA+TGG | - | chr3.1:65327907-65327926 | MS.gene79900:CDS | 40.0% | |
| TCATCTGCAAAACCAACACT+AGG | + | chr3.1:65328590-65328609 | None:intergenic | 40.0% | |
| TGCTACAAACCAGTTTCTGT+TGG | - | chr3.1:65327563-65327582 | MS.gene79900:CDS | 40.0% | |
| ! | ATTCCTGTGTTTTTCCATCC+TGG | - | chr3.1:65328269-65328288 | MS.gene79900:CDS | 40.0% |
| !! | GAATCTTCATTTTCAGGCCT+TGG | + | chr3.1:65328056-65328075 | None:intergenic | 40.0% |
| !! | TGATCTTGAGAAGGTGTTGT+TGG | - | chr3.1:65328385-65328404 | MS.gene79900:CDS | 40.0% |
| AGTGGAAGAAAATGTGGGGT+AGG | - | chr3.1:65327769-65327788 | MS.gene79900:CDS | 45.0% | |
| CCTGAGTGGAAGAAAATGTG+GGG | - | chr3.1:65327765-65327784 | MS.gene79900:CDS | 45.0% | |
| GTACCAGGATGGAAAAACAC+AGG | + | chr3.1:65328275-65328294 | None:intergenic | 45.0% | |
| GTGAATAAGCTGTACCAGGA+TGG | + | chr3.1:65328286-65328305 | None:intergenic | 45.0% | |
| GTGGAAGAAAATGTGGGGTA+GGG | - | chr3.1:65327770-65327789 | MS.gene79900:CDS | 45.0% | |
| GTGTTCTCTTTGCAACCTTC+TGG | - | chr3.1:65328197-65328216 | MS.gene79900:CDS | 45.0% | |
| GTTGTTGGCAATTCCAGAGA+AGG | - | chr3.1:65328400-65328419 | MS.gene79900:CDS | 45.0% | |
| TGTCCGTACATGGACAACAT+GGG | - | chr3.1:65327477-65327496 | MS.gene79900:CDS | 45.0% | |
| ! | GGTTGGTTGAAAAACCTGAG+TGG | - | chr3.1:65327751-65327770 | MS.gene79900:CDS | 45.0% |
| ! | TTACTTTCACTGGAGCACCA+AGG | - | chr3.1:65328036-65328055 | MS.gene79900:CDS | 45.0% |
| CAACATGGGTTTAGGTCCTG+AGG | - | chr3.1:65327491-65327510 | MS.gene79900:CDS | 50.0% | |
| GTGTCCGTACATGGACAACA+TGG | - | chr3.1:65327476-65327495 | MS.gene79900:CDS | 50.0% | |
| GTTGGCAATTCCAGAGAAGG+AGG | - | chr3.1:65328403-65328422 | MS.gene79900:CDS | 50.0% | |
| TTGAACAGTGTCGTGGTTCG+AGG | - | chr3.1:65328093-65328112 | MS.gene79900:CDS | 50.0% | |
| ! | CCCCACATTTTCTTCCACTC+AGG | + | chr3.1:65327768-65327787 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 65327474 | 65328637 | 65327474 | ID=MS.gene79900 |
| chr3.1 | mRNA | 65327474 | 65328637 | 65327474 | ID=MS.gene79900.t1;Parent=MS.gene79900 |
| chr3.1 | exon | 65327474 | 65328637 | 65327474 | ID=MS.gene79900.t1.exon1;Parent=MS.gene79900.t1 |
| chr3.1 | CDS | 65327474 | 65328637 | 65327474 | ID=cds.MS.gene79900.t1;Parent=MS.gene79900.t1 |
| Gene Sequence |
| Protein sequence |
