Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75663.t1 | XP_003601693.1 | 98.2 | 387 | 7 | 0 | 1 | 387 | 98 | 484 | 1.00E-230 | 808.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75663.t1 | Q84R16 | 57.0 | 388 | 163 | 3 | 1 | 387 | 128 | 512 | 3.9e-130 | 466.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75663.t1 | G7JAS7 | 98.2 | 387 | 7 | 0 | 1 | 387 | 98 | 484 | 7.3e-231 | 808.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050807 | MS.gene75663 | 0.819045 | 1.43E-52 | -1.69E-46 |
| MS.gene050959 | MS.gene75663 | 0.810129 | 1.34E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene75663 | 0.815451 | 9.19E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene75663 | 0.801803 | 7.58E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene75663 | 0.806235 | 9.08E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene75663 | 0.816164 | 6.37E-52 | -1.69E-46 |
| MS.gene052732 | MS.gene75663 | 0.82299 | 1.76E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene75663 | 0.829622 | 4.64E-55 | -1.69E-46 |
| MS.gene054550 | MS.gene75663 | 0.800855 | 1.19E-48 | -1.69E-46 |
| MS.gene054584 | MS.gene75663 | 0.82943 | 5.17E-55 | -1.69E-46 |
| MS.gene055465 | MS.gene75663 | 0.803424 | 3.51E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene75663 | 0.800887 | 1.17E-48 | -1.69E-46 |
| MS.gene055468 | MS.gene75663 | 0.803561 | 3.29E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene75663 | 0.804791 | 1.82E-49 | -1.69E-46 |
| MS.gene055890 | MS.gene75663 | 0.81357 | 2.39E-51 | -1.69E-46 |
| MS.gene055891 | MS.gene75663 | 0.811516 | 6.73E-51 | -1.69E-46 |
| MS.gene059154 | MS.gene75663 | 0.818293 | 2.11E-52 | -1.69E-46 |
| MS.gene060587 | MS.gene75663 | 0.804096 | 2.55E-49 | -1.69E-46 |
| MS.gene060884 | MS.gene75663 | 0.803455 | 3.46E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026309 | MS.gene75663 | PPI |
| MS.gene75663 | MS.gene041562 | PPI |
| MS.gene75663 | MS.gene32945 | PPI |
| MS.gene001404 | MS.gene75663 | PPI |
| MS.gene035337 | MS.gene75663 | PPI |
| MS.gene58506 | MS.gene75663 | PPI |
| MS.gene32944 | MS.gene75663 | PPI |
| MS.gene75663 | MS.gene036481 | PPI |
| MS.gene75663 | MS.gene067185 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75663.t1 | MTR_3g084400 | 98.191 | 387 | 7 | 0 | 1 | 387 | 98 | 484 | 0.0 | 799 |
| MS.gene75663.t1 | MTR_7g098650 | 55.039 | 387 | 169 | 3 | 1 | 386 | 110 | 492 | 2.39e-160 | 461 |
| MS.gene75663.t1 | MTR_1g069460 | 53.230 | 387 | 176 | 3 | 1 | 386 | 185 | 567 | 3.17e-156 | 453 |
| MS.gene75663.t1 | MTR_4g129930 | 55.890 | 365 | 158 | 2 | 1 | 363 | 102 | 465 | 3.68e-154 | 443 |
| MS.gene75663.t1 | MTR_5g055350 | 52.432 | 370 | 163 | 4 | 1 | 363 | 83 | 446 | 1.40e-145 | 420 |
| MS.gene75663.t1 | MTR_5g095940 | 52.151 | 372 | 172 | 3 | 1 | 367 | 125 | 495 | 1.96e-139 | 406 |
| MS.gene75663.t1 | MTR_3g007840 | 50.000 | 376 | 159 | 4 | 1 | 371 | 53 | 404 | 1.50e-131 | 384 |
| MS.gene75663.t1 | MTR_5g095950 | 46.809 | 376 | 163 | 4 | 1 | 371 | 98 | 441 | 2.98e-119 | 355 |
| MS.gene75663.t1 | MTR_1g035730 | 42.340 | 359 | 194 | 3 | 1 | 356 | 103 | 451 | 9.73e-95 | 291 |
| MS.gene75663.t1 | MTR_1g102430 | 42.779 | 367 | 194 | 9 | 2 | 360 | 132 | 490 | 1.74e-90 | 281 |
| MS.gene75663.t1 | MTR_5g010370 | 39.674 | 368 | 205 | 7 | 2 | 364 | 192 | 547 | 1.95e-88 | 277 |
| MS.gene75663.t1 | MTR_5g010350 | 40.379 | 369 | 201 | 8 | 2 | 364 | 168 | 523 | 1.48e-83 | 264 |
| MS.gene75663.t1 | MTR_4g119810 | 38.281 | 384 | 204 | 10 | 1 | 361 | 73 | 446 | 5.81e-79 | 250 |
| MS.gene75663.t1 | MTR_4g077920 | 23.630 | 292 | 184 | 12 | 89 | 370 | 155 | 417 | 4.91e-11 | 64.3 |
| MS.gene75663.t1 | MTR_4g077920 | 23.630 | 292 | 184 | 12 | 89 | 370 | 213 | 475 | 5.89e-11 | 64.3 |
| MS.gene75663.t1 | MTR_4g077920 | 27.174 | 184 | 117 | 7 | 89 | 269 | 213 | 382 | 9.94e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75663.t1 | AT4G13990 | 66.237 | 388 | 127 | 3 | 1 | 387 | 128 | 512 | 0.0 | 548 |
| MS.gene75663.t1 | AT4G13990 | 66.237 | 388 | 127 | 3 | 1 | 387 | 128 | 512 | 0.0 | 548 |
| MS.gene75663.t1 | AT2G20370 | 53.230 | 387 | 177 | 2 | 1 | 386 | 182 | 565 | 3.92e-158 | 459 |
| MS.gene75663.t1 | AT2G32750 | 53.600 | 375 | 168 | 3 | 1 | 371 | 114 | 486 | 2.11e-149 | 432 |
| MS.gene75663.t1 | AT2G32750 | 53.600 | 375 | 168 | 3 | 1 | 371 | 116 | 488 | 2.25e-149 | 432 |
| MS.gene75663.t1 | AT2G29040 | 53.213 | 389 | 171 | 4 | 1 | 384 | 330 | 712 | 5.54e-145 | 429 |
| MS.gene75663.t1 | AT2G31990 | 52.561 | 371 | 164 | 7 | 1 | 363 | 114 | 480 | 3.11e-139 | 405 |
| MS.gene75663.t1 | AT2G31990 | 52.561 | 371 | 164 | 7 | 1 | 363 | 106 | 472 | 3.75e-139 | 405 |
| MS.gene75663.t1 | AT2G31990 | 52.547 | 373 | 161 | 8 | 1 | 363 | 152 | 518 | 1.17e-138 | 405 |
| MS.gene75663.t1 | AT2G32740 | 50.000 | 364 | 175 | 4 | 2 | 359 | 98 | 460 | 3.59e-131 | 384 |
| MS.gene75663.t1 | AT5G41250 | 41.989 | 362 | 194 | 6 | 1 | 359 | 208 | 556 | 3.69e-96 | 298 |
| MS.gene75663.t1 | AT1G68470 | 41.274 | 361 | 196 | 5 | 1 | 358 | 99 | 446 | 6.59e-95 | 291 |
| MS.gene75663.t1 | AT5G62220 | 40.437 | 366 | 204 | 8 | 2 | 360 | 150 | 508 | 1.65e-90 | 282 |
| MS.gene75663.t1 | AT1G63450 | 42.000 | 350 | 194 | 7 | 15 | 359 | 315 | 660 | 3.21e-87 | 278 |
| MS.gene75663.t1 | AT4G22580 | 39.037 | 374 | 203 | 10 | 1 | 359 | 68 | 431 | 8.50e-81 | 254 |
Find 73 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGATGATTTGGCTTATT+GGG | 0.218270 | 3.3:+70699924 | MS.gene75663:CDS |
| AATTTGATGATTTGGCTTAT+TGG | 0.229453 | 3.3:+70699923 | MS.gene75663:CDS |
| TAGAAGACAATTTGATGATT+TGG | 0.240067 | 3.3:+70699915 | MS.gene75663:CDS |
| GTGTTCTCTTTGCAACCTTC+TGG | 0.263061 | 3.3:+70700282 | MS.gene75663:CDS |
| CTTATTGGGGTAGTAAGTTT+AGG | 0.286674 | 3.3:+70699938 | MS.gene75663:CDS |
| AACACCTTCATAACATTAAC+AGG | 0.333473 | 3.3:-70700249 | None:intergenic |
| TTATTTCTGGAAGAATTTCT+TGG | 0.334479 | 3.3:+70699887 | MS.gene75663:CDS |
| GTAGCATACCAAGTATTGTT+TGG | 0.367244 | 3.3:-70699631 | None:intergenic |
| ATAAACAGAATACTTAGTTC+TGG | 0.368563 | 3.3:-70700415 | None:intergenic |
| TAGCATACCAAGTATTGTTT+GGG | 0.381452 | 3.3:-70699630 | None:intergenic |
| GTTAATGTTATGAAGGTGTT+TGG | 0.381876 | 3.3:+70700252 | MS.gene75663:CDS |
| AAATAACCTCCAACAGAAAC+TGG | 0.384297 | 3.3:-70699657 | None:intergenic |
| TTGAAAGGATTGAGAATGTA+AGG | 0.389756 | 3.3:+70700625 | MS.gene75663:CDS |
| AACTTCATTTCATCCTTCAA+TGG | 0.405756 | 3.3:+70700041 | MS.gene75663:CDS |
| TATTTCTGGAAGAATTTCTT+GGG | 0.408231 | 3.3:+70699888 | MS.gene75663:CDS |
| AAATTCATTGATTGTAGTTA+TGG | 0.414533 | 3.3:+70700207 | MS.gene75663:CDS |
| ATTGACATATTCATAGATTC+AGG | 0.419427 | 3.3:-70699967 | None:intergenic |
| TACATGGACAACATGGGTTT+AGG | 0.430952 | 3.3:+70699568 | MS.gene75663:CDS |
| GTAAGGGAAACAATGAGAAA+AGG | 0.431105 | 3.3:+70700642 | MS.gene75663:CDS |
| AAAACATCATTATCCATTGA+AGG | 0.431263 | 3.3:-70700054 | None:intergenic |
| TTCTTGTCCCAAACAATACT+TGG | 0.433179 | 3.3:+70699623 | MS.gene75663:CDS |
| GTAAAATTAGACATCAAAAG+AGG | 0.433677 | 3.3:+70700088 | MS.gene75663:CDS |
| CATTGAAAGGGATGCTTGAA+AGG | 0.434984 | 3.3:+70700610 | MS.gene75663:CDS |
| TAGCAGTTGAAGGTAGTTCA+TGG | 0.438552 | 3.3:+70699992 | MS.gene75663:CDS |
| TAAGGGAAACAATGAGAAAA+GGG | 0.440498 | 3.3:+70700643 | MS.gene75663:CDS |
| CTGAAAATGAAGATTCACTT+AGG | 0.454464 | 3.3:+70700145 | MS.gene75663:CDS |
| ATTGCAATAACCTCCTTCTC+TGG | 0.454824 | 3.3:-70700498 | None:intergenic |
| TGAAAATGAAGATTCACTTA+GGG | 0.470090 | 3.3:+70700146 | MS.gene75663:CDS |
| CATTCTTTCACATCCTTCAC+AGG | 0.472787 | 3.3:-70700441 | None:intergenic |
| TACAAACCAGTTTCTGTTGG+AGG | 0.472878 | 3.3:+70699651 | MS.gene75663:CDS |
| TTGAACAGTGTCGTGGTTCG+AGG | 0.476726 | 3.3:+70700178 | MS.gene75663:CDS |
| GTGTCCGTACATGGACAACA+TGG | 0.477539 | 3.3:+70699561 | MS.gene75663:CDS |
| ATGTCAATGTTAGCAGTTGA+AGG | 0.477882 | 3.3:+70699982 | MS.gene75663:CDS |
| ACCAAACATGTGTCCGTACA+TGG | 0.478151 | 3.3:+70699552 | None:intergenic |
| CTTACTGTGAGAGATTCATC+TGG | 0.479511 | 3.3:+70699796 | MS.gene75663:CDS |
| GGATGAAATGAAGTTGGATA+AGG | 0.492206 | 3.3:-70700033 | None:intergenic |
| GCATTTGATTTAGCATTGAA+AGG | 0.493200 | 3.3:+70700597 | MS.gene75663:CDS |
| TGATCTTGAGAAGGTGTTGT+TGG | 0.496751 | 3.3:+70700470 | MS.gene75663:CDS |
| ATTGAAGGATGAAATGAAGT+TGG | 0.497621 | 3.3:-70700039 | None:intergenic |
| CATTTGATTTAGCATTGAAA+GGG | 0.501892 | 3.3:+70700598 | MS.gene75663:CDS |
| TTCATTGATTGTAGTTATGG+TGG | 0.506008 | 3.3:+70700210 | MS.gene75663:CDS |
| AAATAGTTTATGCAGATCCT+AGG | 0.507340 | 3.3:+70700550 | MS.gene75663:CDS |
| TGCTACAAACCAGTTTCTGT+TGG | 0.515202 | 3.3:+70699648 | MS.gene75663:CDS |
| AAACCCATGTTGTCCATGTA+CGG | 0.517484 | 3.3:-70699565 | None:intergenic |
| GAAAATGAAGATTCACTTAG+GGG | 0.522755 | 3.3:+70700147 | MS.gene75663:CDS |
| CTGTGAAGGATGTGAAAGAA+TGG | 0.525377 | 3.3:+70700442 | MS.gene75663:CDS |
| CAGCTTATTCACAATATAAG+TGG | 0.534716 | 3.3:+70700379 | MS.gene75663:CDS |
| TTCTGTTTATATACCTGTGA+AGG | 0.538892 | 3.3:+70700428 | MS.gene75663:CDS |
| GGTTATTGCAATGAGAGAAG+AGG | 0.546024 | 3.3:+70700509 | MS.gene75663:CDS |
| AACCTGAGTGGAAGAAAATG+TGG | 0.546802 | 3.3:+70699848 | MS.gene75663:CDS |
| AGTGGAAGAAAATGTGGGGT+AGG | 0.554745 | 3.3:+70699854 | MS.gene75663:CDS |
| AAATTATCTAACTTAGACCT+AGG | 0.558142 | 3.3:-70700567 | None:intergenic |
| AAAGGGAAAGATCCTAGTGT+TGG | 0.565330 | 3.3:+70700660 | MS.gene75663:CDS |
| GTTGTTGGCAATTCCAGAGA+AGG | 0.568274 | 3.3:+70700485 | MS.gene75663:CDS |
| TAAAATTAGACATCAAAAGA+GGG | 0.575852 | 3.3:+70700089 | MS.gene75663:CDS |
| GTGGAAGAAAATGTGGGGTA+GGG | 0.579581 | 3.3:+70699855 | MS.gene75663:CDS |
| GTGAATAAGCTGTACCAGGA+TGG | 0.582028 | 3.3:-70700368 | None:intergenic |
| ATATCAAGACCAATATAAGA+AGG | 0.583352 | 3.3:-70699748 | None:intergenic |
| TGATCCTGTTAATGTTATGA+AGG | 0.583549 | 3.3:+70700245 | MS.gene75663:CDS |
| TTTGATGATTTGGCTTATTG+GGG | 0.583833 | 3.3:+70699925 | MS.gene75663:CDS |
| ACCTGAGTGGAAGAAAATGT+GGG | 0.590852 | 3.3:+70699849 | MS.gene75663:CDS |
| GTTGGCAATTCCAGAGAAGG+AGG | 0.593293 | 3.3:+70700488 | MS.gene75663:CDS |
| TATTGTGAATAAGCTGTACC+AGG | 0.602648 | 3.3:-70700372 | None:intergenic |
| CAACATGGGTTTAGGTCCTG+AGG | 0.604586 | 3.3:+70699576 | MS.gene75663:CDS |
| TCATCTGCAAAACCAACACT+AGG | 0.607957 | 3.3:-70700672 | None:intergenic |
| TGAAAGGATTGAGAATGTAA+GGG | 0.616462 | 3.3:+70700626 | MS.gene75663:CDS |
| AAAATTATTGAACAGTGTCG+TGG | 0.616891 | 3.3:+70700171 | MS.gene75663:CDS |
| CTTGTGTATGAATCACCAGA+AGG | 0.625417 | 3.3:-70700297 | None:intergenic |
| ATGGAATGTTGATCTTGAGA+AGG | 0.656630 | 3.3:+70700461 | MS.gene75663:CDS |
| AAAATGAAGATTCACTTAGG+GGG | 0.656953 | 3.3:+70700148 | MS.gene75663:CDS |
| TGTCCGTACATGGACAACAT+GGG | 0.661617 | 3.3:+70699562 | MS.gene75663:CDS |
| TTACTTTCACTGGAGCACCA+AGG | 0.715571 | 3.3:+70700121 | MS.gene75663:CDS |
| CCTGAGTGGAAGAAAATGTG+GGG | 0.730427 | 3.3:+70699850 | MS.gene75663:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGTTAAAAATCAAAACTTTA+AGG | + | chr3.3:70699597-70699616 | MS.gene75663:CDS | 20.0% |
| !! | TAAAATTAGACATCAAAAGA+GGG | + | chr3.3:70700089-70700108 | MS.gene75663:CDS | 20.0% |
| !!! | AAATTCATTGATTGTAGTTA+TGG | + | chr3.3:70700207-70700226 | MS.gene75663:CDS | 20.0% |
| !!! | ATTTTTGATTCAATTTTAGC+TGG | + | chr3.3:70700327-70700346 | MS.gene75663:CDS | 20.0% |
| ! | AAAACATCATTATCCATTGA+AGG | - | chr3.3:70700057-70700076 | None:intergenic | 25.0% |
| ! | AAATTATCTAACTTAGACCT+AGG | - | chr3.3:70700570-70700589 | None:intergenic | 25.0% |
| ! | ATAAACAGAATACTTAGTTC+TGG | - | chr3.3:70700418-70700437 | None:intergenic | 25.0% |
| ! | ATATCAAGACCAATATAAGA+AGG | - | chr3.3:70699751-70699770 | None:intergenic | 25.0% |
| ! | ATTGACATATTCATAGATTC+AGG | - | chr3.3:70699970-70699989 | None:intergenic | 25.0% |
| ! | GTAAAATTAGACATCAAAAG+AGG | + | chr3.3:70700088-70700107 | MS.gene75663:CDS | 25.0% |
| ! | TGAAAATGAAGATTCACTTA+GGG | + | chr3.3:70700146-70700165 | MS.gene75663:CDS | 25.0% |
| !! | AATTTGATGATTTGGCTTAT+TGG | + | chr3.3:70699923-70699942 | MS.gene75663:CDS | 25.0% |
| !! | ATTTGATGATTTGGCTTATT+GGG | + | chr3.3:70699924-70699943 | MS.gene75663:CDS | 25.0% |
| !! | CATTTGATTTAGCATTGAAA+GGG | + | chr3.3:70700598-70700617 | MS.gene75663:CDS | 25.0% |
| !! | GTTTTTGTTCCTTCTTATAT+TGG | + | chr3.3:70699739-70699758 | MS.gene75663:CDS | 25.0% |
| !! | TAGAAGACAATTTGATGATT+TGG | + | chr3.3:70699915-70699934 | MS.gene75663:CDS | 25.0% |
| !!! | AAGTTTTGATTTTTAACCTC+AGG | - | chr3.3:70699595-70699614 | None:intergenic | 25.0% |
| !!! | GAATTTTTGTTTACTTTCAC+TGG | + | chr3.3:70700111-70700130 | MS.gene75663:CDS | 25.0% |
| !!! | TATTTCTGGAAGAATTTCTT+GGG | + | chr3.3:70699888-70699907 | MS.gene75663:CDS | 25.0% |
| !!! | TGATATTAGTCGTTTTCTTT+GGG | + | chr3.3:70699765-70699784 | MS.gene75663:CDS | 25.0% |
| !!! | TTATTTCTGGAAGAATTTCT+TGG | + | chr3.3:70699887-70699906 | MS.gene75663:CDS | 25.0% |
| !!! | TTGATATTAGTCGTTTTCTT+TGG | + | chr3.3:70699764-70699783 | MS.gene75663:CDS | 25.0% |
| !!! | TTTTGAACTTGTTAATTGGT+TGG | + | chr3.3:70699819-70699838 | MS.gene75663:CDS | 25.0% |
| AAAATGAAGATTCACTTAGG+GGG | + | chr3.3:70700148-70700167 | MS.gene75663:CDS | 30.0% | |
| AAAATTATTGAACAGTGTCG+TGG | + | chr3.3:70700171-70700190 | MS.gene75663:CDS | 30.0% | |
| AAATAGTTTATGCAGATCCT+AGG | + | chr3.3:70700550-70700569 | MS.gene75663:CDS | 30.0% | |
| AACACCTTCATAACATTAAC+AGG | - | chr3.3:70700252-70700271 | None:intergenic | 30.0% | |
| AACTTCATTTCATCCTTCAA+TGG | + | chr3.3:70700041-70700060 | MS.gene75663:CDS | 30.0% | |
| ATTGAAGGATGAAATGAAGT+TGG | - | chr3.3:70700042-70700061 | None:intergenic | 30.0% | |
| CAGCTTATTCACAATATAAG+TGG | + | chr3.3:70700379-70700398 | MS.gene75663:CDS | 30.0% | |
| CTGAAAATGAAGATTCACTT+AGG | + | chr3.3:70700145-70700164 | MS.gene75663:CDS | 30.0% | |
| GAAAATGAAGATTCACTTAG+GGG | + | chr3.3:70700147-70700166 | MS.gene75663:CDS | 30.0% | |
| TAAGGGAAACAATGAGAAAA+GGG | + | chr3.3:70700643-70700662 | MS.gene75663:CDS | 30.0% | |
| TGAAAGGATTGAGAATGTAA+GGG | + | chr3.3:70700626-70700645 | MS.gene75663:CDS | 30.0% | |
| TGATCCTGTTAATGTTATGA+AGG | + | chr3.3:70700245-70700264 | MS.gene75663:CDS | 30.0% | |
| TTCTGTTTATATACCTGTGA+AGG | + | chr3.3:70700428-70700447 | MS.gene75663:CDS | 30.0% | |
| TTGAAAGGATTGAGAATGTA+AGG | + | chr3.3:70700625-70700644 | MS.gene75663:CDS | 30.0% | |
| ! | CTAAGTGAATCTTCATTTTC+AGG | - | chr3.3:70700147-70700166 | None:intergenic | 30.0% |
| ! | GCATTTGATTTAGCATTGAA+AGG | + | chr3.3:70700597-70700616 | MS.gene75663:CDS | 30.0% |
| ! | GGATCTGCATAAACTATTTT+TGG | - | chr3.3:70700549-70700568 | None:intergenic | 30.0% |
| ! | TAGCATACCAAGTATTGTTT+GGG | - | chr3.3:70699633-70699652 | None:intergenic | 30.0% |
| ! | TGGATAATGATGTTTTGCAA+TGG | + | chr3.3:70700061-70700080 | MS.gene75663:CDS | 30.0% |
| ! | TTCATTGATTGTAGTTATGG+TGG | + | chr3.3:70700210-70700229 | MS.gene75663:CDS | 30.0% |
| ! | TTTGATGATTTGGCTTATTG+GGG | + | chr3.3:70699925-70699944 | MS.gene75663:CDS | 30.0% |
| !! | AGGGATCATTTTCTTATTTC+TGG | + | chr3.3:70699874-70699893 | MS.gene75663:CDS | 30.0% |
| !! | GTTAATGTTATGAAGGTGTT+TGG | + | chr3.3:70700252-70700271 | MS.gene75663:CDS | 30.0% |
| !!! | CTGGTTTTGAACTTGTTAAT+TGG | + | chr3.3:70699815-70699834 | MS.gene75663:CDS | 30.0% |
| !!! | GAATACTTAGTTCTGGTTTT+TGG | - | chr3.3:70700411-70700430 | None:intergenic | 30.0% |
| !!! | TGGAGGTTATTTTTCACAAT+AGG | + | chr3.3:70699668-70699687 | MS.gene75663:CDS | 30.0% |
| AAATAACCTCCAACAGAAAC+TGG | - | chr3.3:70699660-70699679 | None:intergenic | 35.0% | |
| ATGGAATGTTGATCTTGAGA+AGG | + | chr3.3:70700461-70700480 | MS.gene75663:CDS | 35.0% | |
| ATGTCAATGTTAGCAGTTGA+AGG | + | chr3.3:70699982-70700001 | MS.gene75663:CDS | 35.0% | |
| CTTATTGGGGTAGTAAGTTT+AGG | + | chr3.3:70699938-70699957 | MS.gene75663:CDS | 35.0% | |
| GGATGAAATGAAGTTGGATA+AGG | - | chr3.3:70700036-70700055 | None:intergenic | 35.0% | |
| GTAAGGGAAACAATGAGAAA+AGG | + | chr3.3:70700642-70700661 | MS.gene75663:CDS | 35.0% | |
| TATTGTGAATAAGCTGTACC+AGG | - | chr3.3:70700375-70700394 | None:intergenic | 35.0% | |
| TTCTTGTCCCAAACAATACT+TGG | + | chr3.3:70699623-70699642 | MS.gene75663:CDS | 35.0% | |
| ! | GTAGCATACCAAGTATTGTT+TGG | - | chr3.3:70699634-70699653 | None:intergenic | 35.0% |
| AAACCCATGTTGTCCATGTA+CGG | - | chr3.3:70699568-70699587 | None:intergenic | 40.0% | |
| AAAGGGAAAGATCCTAGTGT+TGG | + | chr3.3:70700660-70700679 | MS.gene75663:CDS | 40.0% | |
| AACCTGAGTGGAAGAAAATG+TGG | + | chr3.3:70699848-70699867 | MS.gene75663:CDS | 40.0% | |
| ACCTGAGTGGAAGAAAATGT+GGG | + | chr3.3:70699849-70699868 | MS.gene75663:CDS | 40.0% | |
| ATTGCAATAACCTCCTTCTC+TGG | - | chr3.3:70700501-70700520 | None:intergenic | 40.0% | |
| CATTCTTTCACATCCTTCAC+AGG | - | chr3.3:70700444-70700463 | None:intergenic | 40.0% | |
| CATTGAAAGGGATGCTTGAA+AGG | + | chr3.3:70700610-70700629 | MS.gene75663:CDS | 40.0% | |
| CTGTGAAGGATGTGAAAGAA+TGG | + | chr3.3:70700442-70700461 | MS.gene75663:CDS | 40.0% | |
| CTTACTGTGAGAGATTCATC+TGG | + | chr3.3:70699796-70699815 | MS.gene75663:CDS | 40.0% | |
| CTTGTGTATGAATCACCAGA+AGG | - | chr3.3:70700300-70700319 | None:intergenic | 40.0% | |
| GGTTATTGCAATGAGAGAAG+AGG | + | chr3.3:70700509-70700528 | MS.gene75663:CDS | 40.0% | |
| TACAAACCAGTTTCTGTTGG+AGG | + | chr3.3:70699651-70699670 | MS.gene75663:CDS | 40.0% | |
| TACATGGACAACATGGGTTT+AGG | + | chr3.3:70699568-70699587 | MS.gene75663:CDS | 40.0% | |
| TAGCAGTTGAAGGTAGTTCA+TGG | + | chr3.3:70699992-70700011 | MS.gene75663:CDS | 40.0% | |
| TCATCTGCAAAACCAACACT+AGG | - | chr3.3:70700675-70700694 | None:intergenic | 40.0% | |
| TGCTACAAACCAGTTTCTGT+TGG | + | chr3.3:70699648-70699667 | MS.gene75663:CDS | 40.0% | |
| ! | ATTCCTGTGTTTTTCCATCC+TGG | + | chr3.3:70700354-70700373 | MS.gene75663:CDS | 40.0% |
| !! | GAATCTTCATTTTCAGGCCT+TGG | - | chr3.3:70700141-70700160 | None:intergenic | 40.0% |
| !! | TGATCTTGAGAAGGTGTTGT+TGG | + | chr3.3:70700470-70700489 | MS.gene75663:CDS | 40.0% |
| AGTGGAAGAAAATGTGGGGT+AGG | + | chr3.3:70699854-70699873 | MS.gene75663:CDS | 45.0% | |
| CCTGAGTGGAAGAAAATGTG+GGG | + | chr3.3:70699850-70699869 | MS.gene75663:CDS | 45.0% | |
| GTACCAGGATGGAAAAACAC+AGG | - | chr3.3:70700360-70700379 | None:intergenic | 45.0% | |
| GTGAATAAGCTGTACCAGGA+TGG | - | chr3.3:70700371-70700390 | None:intergenic | 45.0% | |
| GTGGAAGAAAATGTGGGGTA+GGG | + | chr3.3:70699855-70699874 | MS.gene75663:CDS | 45.0% | |
| GTGTTCTCTTTGCAACCTTC+TGG | + | chr3.3:70700282-70700301 | MS.gene75663:CDS | 45.0% | |
| GTTGTTGGCAATTCCAGAGA+AGG | + | chr3.3:70700485-70700504 | MS.gene75663:CDS | 45.0% | |
| TGTCCGTACATGGACAACAT+GGG | + | chr3.3:70699562-70699581 | MS.gene75663:CDS | 45.0% | |
| ! | GGTTGGTTGAAAAACCTGAG+TGG | + | chr3.3:70699836-70699855 | MS.gene75663:CDS | 45.0% |
| ! | TTACTTTCACTGGAGCACCA+AGG | + | chr3.3:70700121-70700140 | MS.gene75663:CDS | 45.0% |
| CAACATGGGTTTAGGTCCTG+AGG | + | chr3.3:70699576-70699595 | MS.gene75663:CDS | 50.0% | |
| GTGTCCGTACATGGACAACA+TGG | + | chr3.3:70699561-70699580 | MS.gene75663:CDS | 50.0% | |
| GTTGGCAATTCCAGAGAAGG+AGG | + | chr3.3:70700488-70700507 | MS.gene75663:CDS | 50.0% | |
| TTGAACAGTGTCGTGGTTCG+AGG | + | chr3.3:70700178-70700197 | MS.gene75663:CDS | 50.0% | |
| ! | CCCCACATTTTCTTCCACTC+AGG | - | chr3.3:70699853-70699872 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 70699559 | 70700722 | 70699559 | ID=MS.gene75663 |
| chr3.3 | mRNA | 70699559 | 70700722 | 70699559 | ID=MS.gene75663.t1;Parent=MS.gene75663 |
| chr3.3 | exon | 70699559 | 70700722 | 70699559 | ID=MS.gene75663.t1.exon1;Parent=MS.gene75663.t1 |
| chr3.3 | CDS | 70699559 | 70700722 | 70699559 | ID=cds.MS.gene75663.t1;Parent=MS.gene75663.t1 |
| Gene Sequence |
| Protein sequence |
