Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58506.t1 | XP_003609665.1 | 90.8 | 455 | 42 | 0 | 1 | 455 | 1 | 455 | 4.80E-248 | 866.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58506.t1 | Q9SUW1 | 67.8 | 404 | 122 | 2 | 45 | 448 | 40 | 435 | 1.6e-167 | 590.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58506.t1 | G7JLG7 | 90.8 | 455 | 42 | 0 | 1 | 455 | 1 | 455 | 3.5e-248 | 866.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050556 | MS.gene58506 | 0.801342 | 9.42E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene58506 | 0.801938 | 7.11E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene58506 | 0.806736 | 7.12E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene58506 | 0.838009 | 3.71E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene58506 | 0.825807 | 3.83E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene58506 | MS.gene77538 | PPI |
| MS.gene58506 | MS.gene001404 | PPI |
| MS.gene58506 | MS.gene79900 | PPI |
| MS.gene58506 | MS.gene067185 | PPI |
| MS.gene58506 | MS.gene026309 | PPI |
| MS.gene58506 | MS.gene75663 | PPI |
| MS.gene58506 | MS.gene32944 | PPI |
| MS.gene58506 | MS.gene045350 | PPI |
| MS.gene58506 | MS.gene32945 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58506.t1 | MTR_4g119810 | 97.149 | 456 | 11 | 2 | 1 | 455 | 1 | 455 | 0.0 | 914 |
| MS.gene58506.t1 | MTR_3g084400 | 37.995 | 429 | 230 | 11 | 31 | 446 | 53 | 458 | 2.68e-85 | 270 |
| MS.gene58506.t1 | MTR_7g098650 | 38.971 | 408 | 224 | 10 | 42 | 444 | 79 | 466 | 6.03e-85 | 271 |
| MS.gene58506.t1 | MTR_1g069460 | 38.038 | 418 | 234 | 10 | 32 | 444 | 144 | 541 | 4.59e-84 | 270 |
| MS.gene58506.t1 | MTR_5g055350 | 38.609 | 417 | 216 | 11 | 42 | 444 | 52 | 442 | 2.99e-82 | 261 |
| MS.gene58506.t1 | MTR_4g129930 | 37.273 | 440 | 241 | 10 | 20 | 446 | 46 | 463 | 4.87e-81 | 258 |
| MS.gene58506.t1 | MTR_1g102430 | 35.308 | 422 | 244 | 7 | 36 | 449 | 94 | 494 | 5.00e-78 | 251 |
| MS.gene58506.t1 | MTR_5g095940 | 35.377 | 424 | 241 | 8 | 42 | 453 | 94 | 496 | 1.47e-76 | 248 |
| MS.gene58506.t1 | MTR_5g010370 | 31.461 | 445 | 275 | 9 | 2 | 444 | 126 | 542 | 3.10e-74 | 243 |
| MS.gene58506.t1 | MTR_3g007840 | 33.183 | 443 | 240 | 8 | 21 | 451 | 1 | 399 | 2.75e-72 | 234 |
| MS.gene58506.t1 | MTR_5g010350 | 32.594 | 451 | 273 | 10 | 2 | 450 | 102 | 523 | 1.70e-71 | 235 |
| MS.gene58506.t1 | MTR_1g035730 | 35.768 | 397 | 227 | 10 | 47 | 439 | 77 | 449 | 2.19e-70 | 230 |
| MS.gene58506.t1 | MTR_5g095950 | 29.688 | 448 | 249 | 12 | 18 | 451 | 41 | 436 | 2.05e-53 | 186 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58506.t1 | AT4G22580 | 65.753 | 438 | 142 | 2 | 11 | 448 | 6 | 435 | 0.0 | 597 |
| MS.gene58506.t1 | AT4G13990 | 38.695 | 429 | 234 | 9 | 24 | 444 | 77 | 484 | 3.39e-91 | 286 |
| MS.gene58506.t1 | AT4G13990 | 38.695 | 429 | 234 | 9 | 24 | 444 | 77 | 484 | 3.39e-91 | 286 |
| MS.gene58506.t1 | AT2G29040 | 38.389 | 422 | 235 | 9 | 36 | 450 | 293 | 696 | 4.15e-89 | 286 |
| MS.gene58506.t1 | AT2G32750 | 36.136 | 440 | 244 | 13 | 20 | 444 | 59 | 476 | 7.52e-86 | 272 |
| MS.gene58506.t1 | AT2G32750 | 36.136 | 440 | 244 | 13 | 20 | 444 | 57 | 474 | 7.94e-86 | 272 |
| MS.gene58506.t1 | AT2G20370 | 37.264 | 424 | 240 | 11 | 32 | 450 | 141 | 543 | 9.96e-84 | 270 |
| MS.gene58506.t1 | AT2G31990 | 37.767 | 421 | 232 | 11 | 36 | 444 | 66 | 468 | 1.20e-83 | 265 |
| MS.gene58506.t1 | AT2G31990 | 37.767 | 421 | 232 | 11 | 36 | 444 | 74 | 476 | 1.48e-83 | 265 |
| MS.gene58506.t1 | AT2G31990 | 37.767 | 421 | 232 | 11 | 36 | 444 | 112 | 514 | 4.41e-83 | 265 |
| MS.gene58506.t1 | AT2G32740 | 34.452 | 447 | 256 | 13 | 12 | 444 | 37 | 460 | 2.83e-79 | 254 |
| MS.gene58506.t1 | AT5G62220 | 35.252 | 417 | 241 | 7 | 39 | 447 | 115 | 510 | 1.81e-78 | 253 |
| MS.gene58506.t1 | AT5G41250 | 33.827 | 405 | 241 | 9 | 42 | 444 | 177 | 556 | 1.99e-74 | 244 |
| MS.gene58506.t1 | AT1G63450 | 33.911 | 404 | 244 | 7 | 42 | 444 | 279 | 660 | 8.20e-72 | 239 |
| MS.gene58506.t1 | AT1G68470 | 31.746 | 441 | 264 | 12 | 13 | 448 | 43 | 451 | 5.52e-71 | 232 |
Find 108 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATACTCCGCCGGATATT+TGG | 0.193332 | 8.4:+12115766 | None:intergenic |
| ATTGGTTTCATAAACCTAAT+TGG | 0.213187 | 8.4:+12115634 | None:intergenic |
| GAATGACGGTTCCATATTTC+AGG | 0.213906 | 8.4:+12116081 | None:intergenic |
| GATTCTCTCCGTTATCTTTA+CGG | 0.217974 | 8.4:-12116171 | MS.gene58506:CDS |
| AGTAGATCTAGGTTGAATTT+TGG | 0.239963 | 8.4:+12116411 | None:intergenic |
| GAGAATGAGGGAGAAAGTTT+TGG | 0.240822 | 8.4:-12115365 | MS.gene58506:CDS |
| AAGAAAATCACCCTGAAATA+TGG | 0.260817 | 8.4:-12116092 | MS.gene58506:CDS |
| GGTCGGTTCGGTACCAACTA+TGG | 0.275660 | 8.4:+12116301 | None:intergenic |
| TGGATAATGATCCTCATCTT+TGG | 0.279722 | 8.4:-12116002 | MS.gene58506:CDS |
| ACCAACTATGGGAACGGTTA+TGG | 0.308107 | 8.4:+12116313 | None:intergenic |
| GGATAATGATCCTCATCTTT+GGG | 0.312571 | 8.4:-12116001 | MS.gene58506:CDS |
| TGATTCCTGGAGTTGTTTAT+AGG | 0.323772 | 8.4:-12115339 | MS.gene58506:CDS |
| GCAGTATTCGTGGCATTTAC+CGG | 0.328562 | 8.4:-12115494 | MS.gene58506:CDS |
| CCAACTATGGGAACGGTTAT+GGG | 0.331615 | 8.4:+12116314 | None:intergenic |
| TAGGCTTCAAGAACTTGATT+TGG | 0.343749 | 8.4:-12115233 | MS.gene58506:CDS |
| GAAACTGTTGATTGTTCTAA+TGG | 0.345989 | 8.4:-12115673 | MS.gene58506:CDS |
| TGTTCACTGGAGTTATATTC+AGG | 0.365262 | 8.4:+12116147 | None:intergenic |
| AATGTGAATGGGAATTCATT+TGG | 0.374128 | 8.4:-12115712 | MS.gene58506:CDS |
| TTGGGATTTCTCTCAGCCTT+TGG | 0.379568 | 8.4:-12116022 | MS.gene58506:CDS |
| TTGTTATGGCCCGACCCGCT+TGG | 0.380292 | 8.4:-12116041 | MS.gene58506:CDS |
| TGAAATATGGAACCGTCATT+CGG | 0.384570 | 8.4:-12116079 | MS.gene58506:CDS |
| GAGGAGGAAGATAGTGATGA+TGG | 0.390746 | 8.4:+12116533 | None:intergenic |
| TACTTAGCAAACCACGGTTT+GGG | 0.399109 | 8.4:-12116345 | MS.gene58506:CDS |
| TGTTATGGCCCGACCCGCTT+GGG | 0.405707 | 8.4:-12116040 | MS.gene58506:CDS |
| TTTGTGAGCATGATCCAATT+AGG | 0.409212 | 8.4:-12115648 | MS.gene58506:CDS |
| AGAGAAATCCCAAGCGGGTC+GGG | 0.410850 | 8.4:+12116032 | None:intergenic |
| ATCTAGCGTTGTTGGATTCG+TGG | 0.415701 | 8.4:-12115861 | MS.gene58506:CDS |
| TAATGTAACCGCGTTAACTT+TGG | 0.420643 | 8.4:-12115947 | MS.gene58506:CDS |
| TTTAACAATCGACGGTACTT+TGG | 0.421402 | 8.4:-12115269 | MS.gene58506:CDS |
| TTTCTGCTACGCCAAATATC+CGG | 0.426952 | 8.4:-12115777 | MS.gene58506:CDS |
| TTACTTAGCAAACCACGGTT+TGG | 0.429313 | 8.4:-12116346 | MS.gene58506:CDS |
| GAAATATGGAACCGTCATTC+GGG | 0.432157 | 8.4:-12116078 | MS.gene58506:CDS |
| GGATGAAACGACGTTGGATA+AGG | 0.439139 | 8.4:+12115889 | None:intergenic |
| TCCACCGAATCTAGCGTTGT+TGG | 0.444512 | 8.4:-12115869 | MS.gene58506:CDS |
| TAGGTTTATGAAACCAATGT+TGG | 0.446642 | 8.4:-12115629 | MS.gene58506:CDS |
| CTTTGGATAAGATTCGATCT+AGG | 0.452162 | 8.4:-12115252 | MS.gene58506:CDS |
| TGGAATCTCGTGCTTGGCCG+TGG | 0.453321 | 8.4:-12115927 | MS.gene58506:CDS |
| AAGAGCAAGAGAAGATCTCT+TGG | 0.457230 | 8.4:+12115819 | None:intergenic |
| AGGAAGCATAATAGTTCTCC+TGG | 0.459426 | 8.4:-12115319 | MS.gene58506:CDS |
| CCCATAACCGTTCCCATAGT+TGG | 0.463878 | 8.4:-12116314 | MS.gene58506:CDS |
| TGCAAGAATCGCGTCAAAAG+TGG | 0.464262 | 8.4:+12115558 | None:intergenic |
| AACAATAGCAGTAATGTGAA+TGG | 0.464376 | 8.4:-12115724 | MS.gene58506:CDS |
| GAATCCAACAACGCTAGATT+CGG | 0.468029 | 8.4:+12115865 | None:intergenic |
| CTGCTAAATCGCAGTATTCG+TGG | 0.470634 | 8.4:-12115504 | MS.gene58506:CDS |
| TTGAAAACAACATCCTCCTT+AGG | 0.471381 | 8.4:+12115439 | None:intergenic |
| GAATCAAAGGCAGCGTAGTA+AGG | 0.474977 | 8.4:+12116189 | None:intergenic |
| GTTAGAATATCCATGCTTAA+CGG | 0.477590 | 8.4:-12116244 | MS.gene58506:CDS |
| AACAATTTGAGAGTAGATCT+AGG | 0.479430 | 8.4:+12116400 | None:intergenic |
| TCCTGGTTTGAGAAATAAGA+AGG | 0.481589 | 8.4:-12115302 | MS.gene58506:CDS |
| GAATACCTAGAGCTAGGGTT+AGG | 0.482401 | 8.4:-12115387 | MS.gene58506:CDS |
| TAACTTTGGAATCTCGTGCT+TGG | 0.483729 | 8.4:-12115933 | MS.gene58506:CDS |
| AAACTATCAAATTCAATCTC+CGG | 0.484033 | 8.4:+12115475 | None:intergenic |
| CAGAAATTTGCACCCAACAT+TGG | 0.489289 | 8.4:+12115616 | None:intergenic |
| AGGTTTATGAAACCAATGTT+GGG | 0.491816 | 8.4:-12115628 | MS.gene58506:CDS |
| ATGAACACCGTGTTGTTCAC+TGG | 0.496549 | 8.4:+12116134 | None:intergenic |
| GAAGATAGTGATGATGGAGA+TGG | 0.504939 | 8.4:+12116539 | None:intergenic |
| ACAATAGCAGTAATGTGAAT+GGG | 0.507436 | 8.4:-12115723 | MS.gene58506:CDS |
| GAGCTAGGGTTAGGAGAATG+AGG | 0.508653 | 8.4:-12115378 | MS.gene58506:CDS |
| TATCCGGCGGAGTATAAGAA+TGG | 0.511989 | 8.4:-12115761 | MS.gene58506:CDS |
| TCCTTCTTATTTCTCAAACC+AGG | 0.512916 | 8.4:+12115301 | None:intergenic |
| AAACCGTGGTTTGCTAAGTA+AGG | 0.519190 | 8.4:+12116348 | None:intergenic |
| CAAGCATGGATGGGTCGGTT+CGG | 0.522247 | 8.4:+12116289 | None:intergenic |
| TGCTTCCTATAAACAACTCC+AGG | 0.522766 | 8.4:+12115334 | None:intergenic |
| CGGATTTGGTTGGATTCAAG+AGG | 0.523835 | 8.4:+12116514 | None:intergenic |
| AAAATGAGTTCAAGCATGGA+TGG | 0.536172 | 8.4:+12116279 | None:intergenic |
| GCATTTGATTTAACAATCGA+CGG | 0.546377 | 8.4:-12115277 | MS.gene58506:CDS |
| ATTCAGGACCGTAAAGATAA+CGG | 0.546502 | 8.4:+12116163 | None:intergenic |
| AATGACGGTTCCATATTTCA+GGG | 0.548354 | 8.4:+12116082 | None:intergenic |
| AGCATGGATATTCTAACATA+CGG | 0.550288 | 8.4:+12116250 | None:intergenic |
| TGCAGAGAATACCTAGAGCT+AGG | 0.553397 | 8.4:-12115393 | MS.gene58506:CDS |
| TTCTGTTACTATACCTAAGG+AGG | 0.554561 | 8.4:-12115452 | MS.gene58506:CDS |
| ATTCCATTCTTATACTCCGC+CGG | 0.557044 | 8.4:+12115758 | None:intergenic |
| TTAGGATCTTCCGTTAAGCA+TGG | 0.563213 | 8.4:+12116234 | None:intergenic |
| GATAATGATCCTCATCTTTG+GGG | 0.563491 | 8.4:-12116000 | MS.gene58506:CDS |
| ATTCTCCTAACCCTAGCTCT+AGG | 0.569970 | 8.4:+12115382 | None:intergenic |
| AGTAAGGACATAAATCGTCT+AGG | 0.570315 | 8.4:+12116364 | None:intergenic |
| AGGAAGATAAACTGCGTTAG+CGG | 0.574038 | 8.4:+12116209 | None:intergenic |
| AATTTCTGTTTACAACCACC+AGG | 0.574716 | 8.4:-12115601 | MS.gene58506:CDS |
| AAGATAACGGAGAGAATCAA+AGG | 0.575689 | 8.4:+12116176 | None:intergenic |
| GTCGGTTCGGTACCAACTAT+GGG | 0.577292 | 8.4:+12116302 | None:intergenic |
| TCCAACAACGCTAGATTCGG+TGG | 0.582112 | 8.4:+12115868 | None:intergenic |
| GCAGAGAATACCTAGAGCTA+GGG | 0.583042 | 8.4:-12115392 | MS.gene58506:CDS |
| GAGTTCAAGCATGGATGGGT+CGG | 0.586601 | 8.4:+12116284 | None:intergenic |
| AAAATGAGTGCGAACAACGT+TGG | 0.589102 | 8.4:-12116455 | MS.gene58506:CDS |
| GAGAGAAATCCCAAGCGGGT+CGG | 0.590735 | 8.4:+12116031 | None:intergenic |
| GGCTGAGAGAAATCCCAAGC+GGG | 0.599255 | 8.4:+12116027 | None:intergenic |
| ATGGAAAATGAGTTCAAGCA+TGG | 0.601996 | 8.4:+12116275 | None:intergenic |
| TCAAAAGTGGATTTACGCGT+AGG | 0.603942 | 8.4:+12115571 | None:intergenic |
| AACGAAGTTCCCCAAAGATG+AGG | 0.606107 | 8.4:+12115991 | None:intergenic |
| ATTTGGTTGGATTCAAGAGG+AGG | 0.608161 | 8.4:+12116517 | None:intergenic |
| AAATGAGTTCAAGCATGGAT+GGG | 0.612671 | 8.4:+12116280 | None:intergenic |
| AATGATCATGACCCGAATGA+CGG | 0.613212 | 8.4:+12116067 | None:intergenic |
| AGCTAGGGTTAGGAGAATGA+GGG | 0.619880 | 8.4:-12115377 | MS.gene58506:CDS |
| TTCGGTGGATGAAACGACGT+TGG | 0.620909 | 8.4:+12115883 | None:intergenic |
| TTCGGTACCAACTATGGGAA+CGG | 0.621276 | 8.4:+12116307 | None:intergenic |
| GGAACAGCATGTTCTTGCCA+CGG | 0.628694 | 8.4:+12115910 | None:intergenic |
| GATATTCTAACATACGGCGA+TGG | 0.630625 | 8.4:+12116256 | None:intergenic |
| CGCGTAGGAGTATCCCCTGG+TGG | 0.639296 | 8.4:+12115586 | None:intergenic |
| AGATGAGGATCATTATCCAA+AGG | 0.639572 | 8.4:+12116006 | None:intergenic |
| TTTCTGTTTACAACCACCAG+GGG | 0.640332 | 8.4:-12115599 | MS.gene58506:CDS |
| TGTCCTTACTTAGCAAACCA+CGG | 0.646035 | 8.4:-12116351 | MS.gene58506:CDS |
| CTGCTACGCCAAATATCCGG+CGG | 0.662754 | 8.4:-12115774 | MS.gene58506:CDS |
| TTACGCGTAGGAGTATCCCC+TGG | 0.680611 | 8.4:+12115583 | None:intergenic |
| ATTTCTGTTTACAACCACCA+GGG | 0.682776 | 8.4:-12115600 | MS.gene58506:CDS |
| GAGATGGAGATGTAGATGTG+TGG | 0.694825 | 8.4:+12116555 | None:intergenic |
| ACGAGATTCCAAAGTTAACG+CGG | 0.729351 | 8.4:+12115939 | None:intergenic |
| TATAACTCCAGTGAACAACA+CGG | 0.729772 | 8.4:-12116141 | MS.gene58506:CDS |
| AGGCTGAGAGAAATCCCAAG+CGG | 0.735314 | 8.4:+12116026 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAGGTTTTCATTTTCTT+CGG | + | chr8.4:12115304-12115323 | None:intergenic | 20.0% |
| ! | AAACTATCAAATTCAATCTC+CGG | + | chr8.4:12116323-12116342 | None:intergenic | 25.0% |
| !! | ATTGGTTTCATAAACCTAAT+TGG | + | chr8.4:12116164-12116183 | None:intergenic | 25.0% |
| !! | TCATGATCATTTTCTTGTTA+TGG | - | chr8.4:12115740-12115759 | MS.gene58506:CDS | 25.0% |
| !! | TTTTTCTGTTACTATACCTA+AGG | - | chr8.4:12116340-12116359 | MS.gene58506:CDS | 25.0% |
| AACAATAGCAGTAATGTGAA+TGG | - | chr8.4:12116071-12116090 | MS.gene58506:CDS | 30.0% | |
| AACAATTTGAGAGTAGATCT+AGG | + | chr8.4:12115398-12115417 | None:intergenic | 30.0% | |
| AAGAAAATCACCCTGAAATA+TGG | - | chr8.4:12115703-12115722 | MS.gene58506:CDS | 30.0% | |
| AATGTGAATGGGAATTCATT+TGG | - | chr8.4:12116083-12116102 | MS.gene58506:CDS | 30.0% | |
| ACAATAGCAGTAATGTGAAT+GGG | - | chr8.4:12116072-12116091 | MS.gene58506:CDS | 30.0% | |
| AGCATGGATATTCTAACATA+CGG | + | chr8.4:12115548-12115567 | None:intergenic | 30.0% | |
| AGGTTTATGAAACCAATGTT+GGG | - | chr8.4:12116167-12116186 | MS.gene58506:CDS | 30.0% | |
| GTTAGAATATCCATGCTTAA+CGG | - | chr8.4:12115551-12115570 | MS.gene58506:CDS | 30.0% | |
| TAGGTTTATGAAACCAATGT+TGG | - | chr8.4:12116166-12116185 | MS.gene58506:CDS | 30.0% | |
| ! | GAAACTGTTGATTGTTCTAA+TGG | - | chr8.4:12116122-12116141 | MS.gene58506:CDS | 30.0% |
| ! | GCATTTGATTTAACAATCGA+CGG | - | chr8.4:12116518-12116537 | MS.gene58506:CDS | 30.0% |
| ! | GTTTTCATTTTCTTCGGATT+TGG | + | chr8.4:12115298-12115317 | None:intergenic | 30.0% |
| ! | TATTTCAGGGTGATTTTCTT+TGG | + | chr8.4:12115703-12115722 | None:intergenic | 30.0% |
| !! | AGTAGATCTAGGTTGAATTT+TGG | + | chr8.4:12115387-12115406 | None:intergenic | 30.0% |
| AAAATGAGTTCAAGCATGGA+TGG | + | chr8.4:12115519-12115538 | None:intergenic | 35.0% | |
| AAATGAGTTCAAGCATGGAT+GGG | + | chr8.4:12115518-12115537 | None:intergenic | 35.0% | |
| AATGACGGTTCCATATTTCA+GGG | + | chr8.4:12115716-12115735 | None:intergenic | 35.0% | |
| AATTTCTGTTTACAACCACC+AGG | - | chr8.4:12116194-12116213 | MS.gene58506:CDS | 35.0% | |
| AGATGAGGATCATTATCCAA+AGG | + | chr8.4:12115792-12115811 | None:intergenic | 35.0% | |
| AGTAAGGACATAAATCGTCT+AGG | + | chr8.4:12115434-12115453 | None:intergenic | 35.0% | |
| ATGGAAAATGAGTTCAAGCA+TGG | + | chr8.4:12115523-12115542 | None:intergenic | 35.0% | |
| ATTCAGGACCGTAAAGATAA+CGG | + | chr8.4:12115635-12115654 | None:intergenic | 35.0% | |
| ATTTCTGTTTACAACCACCA+GGG | - | chr8.4:12116195-12116214 | MS.gene58506:CDS | 35.0% | |
| CTTTGGATAAGATTCGATCT+AGG | - | chr8.4:12116543-12116562 | MS.gene58506:CDS | 35.0% | |
| GATAAATCCTCGAAAAACAC+AGG | + | chr8.4:12116272-12116291 | None:intergenic | 35.0% | |
| GATAATGATCCTCATCTTTG+GGG | - | chr8.4:12115795-12115814 | MS.gene58506:CDS | 35.0% | |
| GATTCTCTCCGTTATCTTTA+CGG | - | chr8.4:12115624-12115643 | MS.gene58506:CDS | 35.0% | |
| GCGGTTACATTAAAAAAGTG+TGG | + | chr8.4:12115840-12115859 | None:intergenic | 35.0% | |
| GGATAATGATCCTCATCTTT+GGG | - | chr8.4:12115794-12115813 | MS.gene58506:CDS | 35.0% | |
| TAATGTAACCGCGTTAACTT+TGG | - | chr8.4:12115848-12115867 | MS.gene58506:CDS | 35.0% | |
| TAGGCTTCAAGAACTTGATT+TGG | - | chr8.4:12116562-12116581 | MS.gene58506:CDS | 35.0% | |
| TATAACTCCAGTGAACAACA+CGG | - | chr8.4:12115654-12115673 | MS.gene58506:CDS | 35.0% | |
| TGAAATATGGAACCGTCATT+CGG | - | chr8.4:12115716-12115735 | MS.gene58506:CDS | 35.0% | |
| TGATTCCTGGAGTTGTTTAT+AGG | - | chr8.4:12116456-12116475 | MS.gene58506:CDS | 35.0% | |
| TGGATAATGATCCTCATCTT+TGG | - | chr8.4:12115793-12115812 | MS.gene58506:CDS | 35.0% | |
| TGTTCACTGGAGTTATATTC+AGG | + | chr8.4:12115651-12115670 | None:intergenic | 35.0% | |
| TTCTGTTACTATACCTAAGG+AGG | - | chr8.4:12116343-12116362 | MS.gene58506:CDS | 35.0% | |
| TTGAAAACAACATCCTCCTT+AGG | + | chr8.4:12116359-12116378 | None:intergenic | 35.0% | |
| TTTAACAATCGACGGTACTT+TGG | - | chr8.4:12116526-12116545 | MS.gene58506:CDS | 35.0% | |
| TTTGTGAGCATGATCCAATT+AGG | - | chr8.4:12116147-12116166 | MS.gene58506:CDS | 35.0% | |
| ! | TCCTGGTTTGAGAAATAAGA+AGG | - | chr8.4:12116493-12116512 | MS.gene58506:CDS | 35.0% |
| ! | TCCTTCTTATTTCTCAAACC+AGG | + | chr8.4:12116497-12116516 | None:intergenic | 35.0% |
| ! | TTGTATACCTGTGTTTTTCG+AGG | - | chr8.4:12116262-12116281 | MS.gene58506:CDS | 35.0% |
| !! | AAGATAACGGAGAGAATCAA+AGG | + | chr8.4:12115622-12115641 | None:intergenic | 35.0% |
| !! | AGATCTAGGTTGAATTTTGG+TGG | + | chr8.4:12115384-12115403 | None:intergenic | 35.0% |
| !! | TCATTTTCTTCGGATTTGGT+TGG | + | chr8.4:12115294-12115313 | None:intergenic | 35.0% |
| !! | TTGGTGGTAGTTTTCTTATG+TGG | + | chr8.4:12115368-12115387 | None:intergenic | 35.0% |
| !!! | AAAGTTTTGGAGTTGATTCC+TGG | - | chr8.4:12116443-12116462 | MS.gene58506:CDS | 35.0% |
| !!! | AAGGAGGATGTTGTTTTCAA+GGG | - | chr8.4:12116359-12116378 | MS.gene58506:CDS | 35.0% |
| !!! | ATGTAGATGTGTGGTTTTGA+TGG | + | chr8.4:12115234-12115253 | None:intergenic | 35.0% |
| !!! | CTGTTGTTGTTGTCGTTTTA+AGG | + | chr8.4:12115320-12115339 | None:intergenic | 35.0% |
| !!! | TAAGGAGGATGTTGTTTTCA+AGG | - | chr8.4:12116358-12116377 | MS.gene58506:CDS | 35.0% |
| AAAATGAGTGCGAACAACGT+TGG | - | chr8.4:12115340-12115359 | MS.gene58506:CDS | 40.0% | |
| AAGAGCAAGAGAAGATCTCT+TGG | + | chr8.4:12115979-12115998 | None:intergenic | 40.0% | |
| AATGATCATGACCCGAATGA+CGG | + | chr8.4:12115731-12115750 | None:intergenic | 40.0% | |
| ACGAGATTCCAAAGTTAACG+CGG | + | chr8.4:12115859-12115878 | None:intergenic | 40.0% | |
| AGGAAGATAAACTGCGTTAG+CGG | + | chr8.4:12115589-12115608 | None:intergenic | 40.0% | |
| ATTCCATTCTTATACTCCGC+CGG | + | chr8.4:12116040-12116059 | None:intergenic | 40.0% | |
| ATTTGGTTGGATTCAAGAGG+AGG | + | chr8.4:12115281-12115300 | None:intergenic | 40.0% | |
| CAGAAATTTGCACCCAACAT+TGG | + | chr8.4:12116182-12116201 | None:intergenic | 40.0% | |
| GAAATATGGAACCGTCATTC+GGG | - | chr8.4:12115717-12115736 | MS.gene58506:CDS | 40.0% | |
| GAATCCAACAACGCTAGATT+CGG | + | chr8.4:12115933-12115952 | None:intergenic | 40.0% | |
| GAATGACGGTTCCATATTTC+AGG | + | chr8.4:12115717-12115736 | None:intergenic | 40.0% | |
| GATATTCTAACATACGGCGA+TGG | + | chr8.4:12115542-12115561 | None:intergenic | 40.0% | |
| TACTTAGCAAACCACGGTTT+GGG | - | chr8.4:12115450-12115469 | MS.gene58506:CDS | 40.0% | |
| TGCTTCCTATAAACAACTCC+AGG | + | chr8.4:12116464-12116483 | None:intergenic | 40.0% | |
| TGTCCTTACTTAGCAAACCA+CGG | - | chr8.4:12115444-12115463 | MS.gene58506:CDS | 40.0% | |
| TTACTTAGCAAACCACGGTT+TGG | - | chr8.4:12115449-12115468 | MS.gene58506:CDS | 40.0% | |
| TTAGGATCTTCCGTTAAGCA+TGG | + | chr8.4:12115564-12115583 | None:intergenic | 40.0% | |
| TTTCTGCTACGCCAAATATC+CGG | - | chr8.4:12116018-12116037 | MS.gene58506:CDS | 40.0% | |
| TTTCTGTTTACAACCACCAG+GGG | - | chr8.4:12116196-12116215 | MS.gene58506:CDS | 40.0% | |
| ! | AGGAAGCATAATAGTTCTCC+TGG | - | chr8.4:12116476-12116495 | MS.gene58506:CDS | 40.0% |
| ! | GAGAATGAGGGAGAAAGTTT+TGG | - | chr8.4:12116430-12116449 | MS.gene58506:CDS | 40.0% |
| ! | TAAACTGCGTTAGCGGTTTT+AGG | + | chr8.4:12115582-12115601 | None:intergenic | 40.0% |
| ! | TCAAAAGTGGATTTACGCGT+AGG | + | chr8.4:12116227-12116246 | None:intergenic | 40.0% |
| ! | TCTTCTCTTGCTCTTTTTGC+AGG | - | chr8.4:12115984-12116003 | MS.gene58506:CDS | 40.0% |
| !! | AAACCGTGGTTTGCTAAGTA+AGG | + | chr8.4:12115450-12115469 | None:intergenic | 40.0% |
| !! | GAAGATAGTGATGATGGAGA+TGG | + | chr8.4:12115259-12115278 | None:intergenic | 40.0% |
| !! | TAACTTTGGAATCTCGTGCT+TGG | - | chr8.4:12115862-12115881 | MS.gene58506:CDS | 40.0% |
| AACGAAGTTCCCCAAAGATG+AGG | + | chr8.4:12115807-12115826 | None:intergenic | 45.0% | |
| ACCAACTATGGGAACGGTTA+TGG | + | chr8.4:12115485-12115504 | None:intergenic | 45.0% | |
| AGCTAGGGTTAGGAGAATGA+GGG | - | chr8.4:12116418-12116437 | MS.gene58506:CDS | 45.0% | |
| ATCTAGCGTTGTTGGATTCG+TGG | - | chr8.4:12115934-12115953 | MS.gene58506:CDS | 45.0% | |
| CCAACTATGGGAACGGTTAT+GGG | + | chr8.4:12115484-12115503 | None:intergenic | 45.0% | |
| CTGCTAAATCGCAGTATTCG+TGG | - | chr8.4:12116291-12116310 | MS.gene58506:CDS | 45.0% | |
| CTTATACTCCGCCGGATATT+TGG | + | chr8.4:12116032-12116051 | None:intergenic | 45.0% | |
| GAATACCTAGAGCTAGGGTT+AGG | - | chr8.4:12116408-12116427 | MS.gene58506:CDS | 45.0% | |
| GAATCAAAGGCAGCGTAGTA+AGG | + | chr8.4:12115609-12115628 | None:intergenic | 45.0% | |
| GAGATGGAGATGTAGATGTG+TGG | + | chr8.4:12115243-12115262 | None:intergenic | 45.0% | |
| GAGGAGGAAGATAGTGATGA+TGG | + | chr8.4:12115265-12115284 | None:intergenic | 45.0% | |
| GCAGAGAATACCTAGAGCTA+GGG | - | chr8.4:12116403-12116422 | MS.gene58506:CDS | 45.0% | |
| GCAGTATTCGTGGCATTTAC+CGG | - | chr8.4:12116301-12116320 | MS.gene58506:CDS | 45.0% | |
| GGATGAAACGACGTTGGATA+AGG | + | chr8.4:12115909-12115928 | None:intergenic | 45.0% | |
| TATCCGGCGGAGTATAAGAA+TGG | - | chr8.4:12116034-12116053 | MS.gene58506:CDS | 45.0% | |
| TGCAAGAATCGCGTCAAAAG+TGG | + | chr8.4:12116240-12116259 | None:intergenic | 45.0% | |
| TGCAGAGAATACCTAGAGCT+AGG | - | chr8.4:12116402-12116421 | MS.gene58506:CDS | 45.0% | |
| TTCGGTACCAACTATGGGAA+CGG | + | chr8.4:12115491-12115510 | None:intergenic | 45.0% | |
| TTGGGATTTCTCTCAGCCTT+TGG | - | chr8.4:12115773-12115792 | MS.gene58506:CDS | 45.0% | |
| ! | ACTTTTGACGCGATTCTTGC+AGG | - | chr8.4:12116239-12116258 | MS.gene58506:CDS | 45.0% |
| ! | ATGAACACCGTGTTGTTCAC+TGG | + | chr8.4:12115664-12115683 | None:intergenic | 45.0% |
| ! | ATTCTCCTAACCCTAGCTCT+AGG | + | chr8.4:12116416-12116435 | None:intergenic | 45.0% |
| ! | CGGATTTGGTTGGATTCAAG+AGG | + | chr8.4:12115284-12115303 | None:intergenic | 45.0% |
| ! | TCTCTTGCTCTTTTTGCAGG+TGG | - | chr8.4:12115987-12116006 | MS.gene58506:CDS | 45.0% |
| AGGCTGAGAGAAATCCCAAG+CGG | + | chr8.4:12115772-12115791 | None:intergenic | 50.0% | |
| CCCATAACCGTTCCCATAGT+TGG | - | chr8.4:12115481-12115500 | MS.gene58506:CDS | 50.0% | |
| GAGCTAGGGTTAGGAGAATG+AGG | - | chr8.4:12116417-12116436 | MS.gene58506:CDS | 50.0% | |
| GAGTTCAAGCATGGATGGGT+CGG | + | chr8.4:12115514-12115533 | None:intergenic | 50.0% | |
| GGAACAGCATGTTCTTGCCA+CGG | + | chr8.4:12115888-12115907 | None:intergenic | 50.0% | |
| TCCAACAACGCTAGATTCGG+TGG | + | chr8.4:12115930-12115949 | None:intergenic | 50.0% | |
| TCCACCGAATCTAGCGTTGT+TGG | - | chr8.4:12115926-12115945 | MS.gene58506:CDS | 50.0% | |
| TTCGGTGGATGAAACGACGT+TGG | + | chr8.4:12115915-12115934 | None:intergenic | 50.0% | |
| ! | CTTGCTCTTTTTGCAGGTGG+TGG | - | chr8.4:12115990-12116009 | MS.gene58506:CDS | 50.0% |
| !! | GTCGGTTCGGTACCAACTAT+GGG | + | chr8.4:12115496-12115515 | None:intergenic | 50.0% |
| !!! | GGGTTTTTTGACCCAAACCG+TGG | + | chr8.4:12115464-12115483 | None:intergenic | 50.0% |
| AGAGAAATCCCAAGCGGGTC+GGG | + | chr8.4:12115766-12115785 | None:intergenic | 55.0% | |
| CAAGCATGGATGGGTCGGTT+CGG | + | chr8.4:12115509-12115528 | None:intergenic | 55.0% | |
| CTGCTACGCCAAATATCCGG+CGG | - | chr8.4:12116021-12116040 | MS.gene58506:CDS | 55.0% | |
| GAGAGAAATCCCAAGCGGGT+CGG | + | chr8.4:12115767-12115786 | None:intergenic | 55.0% | |
| GGCTGAGAGAAATCCCAAGC+GGG | + | chr8.4:12115771-12115790 | None:intergenic | 55.0% | |
| !! | GCTCTTTTTGCAGGTGGTGG+TGG | - | chr8.4:12115993-12116012 | MS.gene58506:CDS | 55.0% |
| !! | GGTCGGTTCGGTACCAACTA+TGG | + | chr8.4:12115497-12115516 | None:intergenic | 55.0% |
| !! | TTACGCGTAGGAGTATCCCC+TGG | + | chr8.4:12116215-12116234 | None:intergenic | 55.0% |
| TGGAATCTCGTGCTTGGCCG+TGG | - | chr8.4:12115868-12115887 | MS.gene58506:CDS | 60.0% | |
| TGTTATGGCCCGACCCGCTT+GGG | - | chr8.4:12115755-12115774 | MS.gene58506:CDS | 60.0% | |
| TTGTTATGGCCCGACCCGCT+TGG | - | chr8.4:12115754-12115773 | MS.gene58506:CDS | 60.0% | |
| !! | CGCGTAGGAGTATCCCCTGG+TGG | + | chr8.4:12116212-12116231 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 12115225 | 12116592 | 12115225 | ID=MS.gene58506 |
| chr8.4 | mRNA | 12115225 | 12116592 | 12115225 | ID=MS.gene58506.t1;Parent=MS.gene58506 |
| chr8.4 | exon | 12115225 | 12116592 | 12115225 | ID=MS.gene58506.t1.exon1;Parent=MS.gene58506.t1 |
| chr8.4 | CDS | 12115225 | 12116592 | 12115225 | ID=cds.MS.gene58506.t1;Parent=MS.gene58506.t1 |
| Gene Sequence |
| Protein sequence |
