Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77538.t1 | XP_003601693.1 | 98.2 | 387 | 7 | 0 | 1 | 387 | 98 | 484 | 4.50E-231 | 810.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77538.t1 | Q84R16 | 57.2 | 388 | 162 | 3 | 1 | 387 | 128 | 512 | 6.0e-131 | 468.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77538.t1 | G7JAS7 | 98.2 | 387 | 7 | 0 | 1 | 387 | 98 | 484 | 3.3e-231 | 810.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051719 | MS.gene77538 | 0.821415 | 4.09E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene77538 | 0.814735 | 1.32E-51 | -1.69E-46 |
| MS.gene052020 | MS.gene77538 | 0.812397 | 4.33E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene77538 | 0.802315 | 5.95E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene77538 | 0.805702 | 1.18E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene77538 | 0.806242 | 9.05E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene77538 | 0.806841 | 6.76E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041562 | MS.gene77538 | PPI |
| MS.gene58506 | MS.gene77538 | PPI |
| MS.gene067185 | MS.gene77538 | PPI |
| MS.gene036481 | MS.gene77538 | PPI |
| MS.gene026309 | MS.gene77538 | PPI |
| MS.gene77538 | MS.gene32945 | PPI |
| MS.gene001404 | MS.gene77538 | PPI |
| MS.gene035337 | MS.gene77538 | PPI |
| MS.gene32944 | MS.gene77538 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77538.t1 | MTR_3g084400 | 98.191 | 387 | 7 | 0 | 1 | 387 | 98 | 484 | 0.0 | 798 |
| MS.gene77538.t1 | MTR_7g098650 | 55.039 | 387 | 169 | 3 | 1 | 386 | 110 | 492 | 5.80e-161 | 463 |
| MS.gene77538.t1 | MTR_1g069460 | 53.488 | 387 | 175 | 3 | 1 | 386 | 185 | 567 | 2.21e-157 | 456 |
| MS.gene77538.t1 | MTR_4g129930 | 56.164 | 365 | 157 | 2 | 1 | 363 | 102 | 465 | 4.34e-155 | 445 |
| MS.gene77538.t1 | MTR_5g055350 | 52.703 | 370 | 162 | 4 | 1 | 363 | 83 | 446 | 2.37e-146 | 422 |
| MS.gene77538.t1 | MTR_5g095940 | 52.419 | 372 | 171 | 3 | 1 | 367 | 125 | 495 | 1.83e-140 | 409 |
| MS.gene77538.t1 | MTR_3g007840 | 50.266 | 376 | 158 | 4 | 1 | 371 | 53 | 404 | 1.43e-132 | 386 |
| MS.gene77538.t1 | MTR_5g095950 | 47.074 | 376 | 162 | 4 | 1 | 371 | 98 | 441 | 3.33e-120 | 357 |
| MS.gene77538.t1 | MTR_1g035730 | 42.340 | 359 | 194 | 3 | 1 | 356 | 103 | 451 | 1.53e-94 | 290 |
| MS.gene77538.t1 | MTR_1g102430 | 42.779 | 367 | 194 | 9 | 2 | 360 | 132 | 490 | 1.22e-90 | 282 |
| MS.gene77538.t1 | MTR_5g010370 | 39.674 | 368 | 205 | 7 | 2 | 364 | 192 | 547 | 9.24e-89 | 278 |
| MS.gene77538.t1 | MTR_5g010350 | 40.379 | 369 | 201 | 8 | 2 | 364 | 168 | 523 | 8.64e-84 | 265 |
| MS.gene77538.t1 | MTR_4g119810 | 38.542 | 384 | 203 | 10 | 1 | 361 | 73 | 446 | 7.91e-80 | 252 |
| MS.gene77538.t1 | MTR_4g077920 | 23.630 | 292 | 184 | 12 | 89 | 370 | 155 | 417 | 5.00e-11 | 64.3 |
| MS.gene77538.t1 | MTR_4g077920 | 23.630 | 292 | 184 | 12 | 89 | 370 | 213 | 475 | 6.16e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77538.t1 | AT4G13990 | 66.237 | 388 | 127 | 3 | 1 | 387 | 128 | 512 | 0.0 | 548 |
| MS.gene77538.t1 | AT4G13990 | 66.237 | 388 | 127 | 3 | 1 | 387 | 128 | 512 | 0.0 | 548 |
| MS.gene77538.t1 | AT2G20370 | 53.230 | 387 | 177 | 2 | 1 | 386 | 182 | 565 | 2.60e-158 | 459 |
| MS.gene77538.t1 | AT2G32750 | 53.333 | 375 | 169 | 3 | 1 | 371 | 114 | 486 | 5.14e-149 | 431 |
| MS.gene77538.t1 | AT2G32750 | 53.333 | 375 | 169 | 3 | 1 | 371 | 116 | 488 | 5.67e-149 | 431 |
| MS.gene77538.t1 | AT2G29040 | 53.213 | 389 | 171 | 4 | 1 | 384 | 330 | 712 | 1.05e-145 | 431 |
| MS.gene77538.t1 | AT2G31990 | 52.830 | 371 | 163 | 7 | 1 | 363 | 114 | 480 | 4.07e-140 | 408 |
| MS.gene77538.t1 | AT2G31990 | 52.830 | 371 | 163 | 7 | 1 | 363 | 106 | 472 | 5.46e-140 | 407 |
| MS.gene77538.t1 | AT2G31990 | 52.815 | 373 | 160 | 8 | 1 | 363 | 152 | 518 | 1.74e-139 | 408 |
| MS.gene77538.t1 | AT2G32740 | 50.000 | 364 | 175 | 4 | 2 | 359 | 98 | 460 | 1.52e-131 | 385 |
| MS.gene77538.t1 | AT5G41250 | 41.989 | 362 | 194 | 6 | 1 | 359 | 208 | 556 | 1.88e-96 | 298 |
| MS.gene77538.t1 | AT1G68470 | 41.274 | 361 | 196 | 5 | 1 | 358 | 99 | 446 | 3.13e-95 | 292 |
| MS.gene77538.t1 | AT5G62220 | 40.437 | 366 | 204 | 8 | 2 | 360 | 150 | 508 | 1.68e-90 | 282 |
| MS.gene77538.t1 | AT1G63450 | 42.000 | 350 | 194 | 7 | 15 | 359 | 315 | 660 | 1.43e-87 | 278 |
| MS.gene77538.t1 | AT4G22580 | 39.037 | 374 | 203 | 10 | 1 | 359 | 68 | 431 | 8.50e-81 | 254 |
Find 73 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGATGATTTGGCTTATT+GGG | 0.218270 | 3.2:+72690410 | MS.gene77538:CDS |
| AATTTGATGATTTGGCTTAT+TGG | 0.229453 | 3.2:+72690409 | MS.gene77538:CDS |
| TAGAAGACAATTTGATGATT+TGG | 0.240067 | 3.2:+72690401 | MS.gene77538:CDS |
| GTGTTCTCTTTGCAACCTTC+TGG | 0.263061 | 3.2:+72690768 | MS.gene77538:CDS |
| CTTATTGGGGTAGTAAGTTT+AGG | 0.286674 | 3.2:+72690424 | MS.gene77538:CDS |
| AACACCTTCATAACATTAAC+AGG | 0.333473 | 3.2:-72690735 | None:intergenic |
| TTATTTCTGGAAGAATTTCT+TGG | 0.334479 | 3.2:+72690373 | MS.gene77538:CDS |
| GTAGCATACCAAGTATTGTT+TGG | 0.367244 | 3.2:-72690117 | None:intergenic |
| TAGCATACCAAGTATTGTTT+GGG | 0.381452 | 3.2:-72690116 | None:intergenic |
| GTTAATGTTATGAAGGTGTT+TGG | 0.381876 | 3.2:+72690738 | MS.gene77538:CDS |
| AAATAACCTCCAACAGAAAC+TGG | 0.384297 | 3.2:-72690143 | None:intergenic |
| TTGAAAGGATTGAGAATGTA+AGG | 0.389756 | 3.2:+72691111 | MS.gene77538:CDS |
| AACTTCATTTCATCCTTCAA+TGG | 0.405756 | 3.2:+72690527 | MS.gene77538:CDS |
| TATTTCTGGAAGAATTTCTT+GGG | 0.408231 | 3.2:+72690374 | MS.gene77538:CDS |
| AAATTCATTGATTGTAGTTA+TGG | 0.414533 | 3.2:+72690693 | MS.gene77538:CDS |
| ATTGACATATTCATAGATTC+AGG | 0.419427 | 3.2:-72690453 | None:intergenic |
| TACATGGACAACATGGGTTT+AGG | 0.430952 | 3.2:+72690054 | MS.gene77538:CDS |
| AAAACATCATTATCCATTGA+AGG | 0.431263 | 3.2:-72690540 | None:intergenic |
| TTCTTGTCCCAAACAATACT+TGG | 0.433179 | 3.2:+72690109 | MS.gene77538:CDS |
| GTAAAATTAGACATCAAAAG+AGG | 0.433677 | 3.2:+72690574 | MS.gene77538:CDS |
| CATTGAAAGGGATGCTTGAA+AGG | 0.434984 | 3.2:+72691096 | MS.gene77538:CDS |
| TAGCAGTTGAAGGTAGTTCA+TGG | 0.438552 | 3.2:+72690478 | MS.gene77538:CDS |
| CTGAAAATGAAGATTCACTT+AGG | 0.454464 | 3.2:+72690631 | MS.gene77538:CDS |
| ATTGCAATAACCTCCTTCTC+TGG | 0.454824 | 3.2:-72690984 | None:intergenic |
| TAAGGGAAACAGTGAGGAAA+GGG | 0.465510 | 3.2:+72691129 | MS.gene77538:CDS |
| TGAAAATGAAGATTCACTTA+GGG | 0.470090 | 3.2:+72690632 | MS.gene77538:CDS |
| CATTCTTTCACATCCTTCAC+AGG | 0.472787 | 3.2:-72690927 | None:intergenic |
| TACAAACCAGTTTCTGTTGG+AGG | 0.472878 | 3.2:+72690137 | MS.gene77538:CDS |
| TTGAACAGTGTCGTGGTTCG+AGG | 0.476726 | 3.2:+72690664 | MS.gene77538:CDS |
| GTGTCCGTACATGGACAACA+TGG | 0.477539 | 3.2:+72690047 | MS.gene77538:CDS |
| ATGTCAATGTTAGCAGTTGA+AGG | 0.477882 | 3.2:+72690468 | MS.gene77538:CDS |
| ACCAAACATGTGTCCGTACA+TGG | 0.478151 | 3.2:+72690038 | None:intergenic |
| CTTACTGTGAGAGATTCATC+TGG | 0.479511 | 3.2:+72690282 | MS.gene77538:CDS |
| GGATGAAATGAAGTTGGATA+AGG | 0.492206 | 3.2:-72690519 | None:intergenic |
| GCATTTGATTTAGCATTGAA+AGG | 0.493200 | 3.2:+72691083 | MS.gene77538:CDS |
| TGATCTTGAGAAGGTGTTGT+TGG | 0.496751 | 3.2:+72690956 | MS.gene77538:CDS |
| ATTGAAGGATGAAATGAAGT+TGG | 0.497621 | 3.2:-72690525 | None:intergenic |
| CATTTGATTTAGCATTGAAA+GGG | 0.501892 | 3.2:+72691084 | MS.gene77538:CDS |
| TTCATTGATTGTAGTTATGG+TGG | 0.506008 | 3.2:+72690696 | MS.gene77538:CDS |
| TGCTACAAACCAGTTTCTGT+TGG | 0.515202 | 3.2:+72690134 | MS.gene77538:CDS |
| AAATAGTTTATGCAGATCCT+AGG | 0.516398 | 3.2:+72691036 | MS.gene77538:CDS |
| AAACCCATGTTGTCCATGTA+CGG | 0.517484 | 3.2:-72690051 | None:intergenic |
| GAAAATGAAGATTCACTTAG+GGG | 0.522755 | 3.2:+72690633 | MS.gene77538:CDS |
| CTGTGAAGGATGTGAAAGAA+TGG | 0.525377 | 3.2:+72690928 | MS.gene77538:CDS |
| CAGCTTATTCACAATATAAG+TGG | 0.534716 | 3.2:+72690865 | MS.gene77538:CDS |
| TTCTGTTTATATACCTGTGA+AGG | 0.538892 | 3.2:+72690914 | MS.gene77538:CDS |
| GGTTATTGCAATGAGAGAAG+AGG | 0.546024 | 3.2:+72690995 | MS.gene77538:CDS |
| AACCTGAGTGGAAGAAAATG+TGG | 0.546802 | 3.2:+72690334 | MS.gene77538:CDS |
| AGTGGAAGAAAATGTGGGGT+AGG | 0.554745 | 3.2:+72690340 | MS.gene77538:CDS |
| AAATTATCTAACTTAGACCT+AGG | 0.558142 | 3.2:-72691053 | None:intergenic |
| GTTGTTGGCAATTCCAGAGA+AGG | 0.568274 | 3.2:+72690971 | MS.gene77538:CDS |
| AAAGGGAAAGATCCTAGTGT+TGG | 0.572150 | 3.2:+72691146 | MS.gene77538:CDS |
| TAAAATTAGACATCAAAAGA+GGG | 0.575852 | 3.2:+72690575 | MS.gene77538:CDS |
| GTGGAAGAAAATGTGGGGTA+GGG | 0.579581 | 3.2:+72690341 | MS.gene77538:CDS |
| GTGAATAAGCTGTACCAGGA+TGG | 0.582028 | 3.2:-72690854 | None:intergenic |
| ATATCAAGACCAATATAAGA+AGG | 0.583352 | 3.2:-72690234 | None:intergenic |
| TGATCCTGTTAATGTTATGA+AGG | 0.583549 | 3.2:+72690731 | MS.gene77538:CDS |
| TTTGATGATTTGGCTTATTG+GGG | 0.583833 | 3.2:+72690411 | MS.gene77538:CDS |
| ACCTGAGTGGAAGAAAATGT+GGG | 0.590852 | 3.2:+72690335 | MS.gene77538:CDS |
| GTTGGCAATTCCAGAGAAGG+AGG | 0.593293 | 3.2:+72690974 | MS.gene77538:CDS |
| GTAAGGGAAACAGTGAGGAA+AGG | 0.601739 | 3.2:+72691128 | MS.gene77538:CDS |
| TATTGTGAATAAGCTGTACC+AGG | 0.602648 | 3.2:-72690858 | None:intergenic |
| CAACATGGGTTTAGGTCCTG+AGG | 0.604586 | 3.2:+72690062 | MS.gene77538:CDS |
| TCATCTGCAAAACCAACACT+AGG | 0.607957 | 3.2:-72691158 | None:intergenic |
| TGAAAGGATTGAGAATGTAA+GGG | 0.616462 | 3.2:+72691112 | MS.gene77538:CDS |
| AAAATTATTGAACAGTGTCG+TGG | 0.616891 | 3.2:+72690657 | MS.gene77538:CDS |
| CTTGTGTATGAATCACCAGA+AGG | 0.625417 | 3.2:-72690783 | None:intergenic |
| ATGGAATGTTGATCTTGAGA+AGG | 0.656630 | 3.2:+72690947 | MS.gene77538:CDS |
| AAAATGAAGATTCACTTAGG+GGG | 0.656953 | 3.2:+72690634 | MS.gene77538:CDS |
| AGAATGTAAGGGAAACAGTG+AGG | 0.660716 | 3.2:+72691123 | MS.gene77538:CDS |
| TGTCCGTACATGGACAACAT+GGG | 0.661617 | 3.2:+72690048 | MS.gene77538:CDS |
| TTACTTTCACTGGAGCACCA+AGG | 0.715571 | 3.2:+72690607 | MS.gene77538:CDS |
| CCTGAGTGGAAGAAAATGTG+GGG | 0.730427 | 3.2:+72690336 | MS.gene77538:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGTTAAAAATCAAAACTTTA+AGG | + | chr3.2:72690083-72690102 | MS.gene77538:CDS | 20.0% |
| !! | TAAAATTAGACATCAAAAGA+GGG | + | chr3.2:72690575-72690594 | MS.gene77538:CDS | 20.0% |
| !!! | AAATTCATTGATTGTAGTTA+TGG | + | chr3.2:72690693-72690712 | MS.gene77538:CDS | 20.0% |
| !!! | ATTTTTGATTCAATTTTAGC+TGG | + | chr3.2:72690813-72690832 | MS.gene77538:CDS | 20.0% |
| ! | AAAACATCATTATCCATTGA+AGG | - | chr3.2:72690543-72690562 | None:intergenic | 25.0% |
| ! | AAATTATCTAACTTAGACCT+AGG | - | chr3.2:72691056-72691075 | None:intergenic | 25.0% |
| ! | ATATCAAGACCAATATAAGA+AGG | - | chr3.2:72690237-72690256 | None:intergenic | 25.0% |
| ! | ATTGACATATTCATAGATTC+AGG | - | chr3.2:72690456-72690475 | None:intergenic | 25.0% |
| ! | GTAAAATTAGACATCAAAAG+AGG | + | chr3.2:72690574-72690593 | MS.gene77538:CDS | 25.0% |
| ! | TGAAAATGAAGATTCACTTA+GGG | + | chr3.2:72690632-72690651 | MS.gene77538:CDS | 25.0% |
| !! | AATTTGATGATTTGGCTTAT+TGG | + | chr3.2:72690409-72690428 | MS.gene77538:CDS | 25.0% |
| !! | ATTTGATGATTTGGCTTATT+GGG | + | chr3.2:72690410-72690429 | MS.gene77538:CDS | 25.0% |
| !! | CATTTGATTTAGCATTGAAA+GGG | + | chr3.2:72691084-72691103 | MS.gene77538:CDS | 25.0% |
| !! | GTTTTTGTTCCTTCTTATAT+TGG | + | chr3.2:72690225-72690244 | MS.gene77538:CDS | 25.0% |
| !! | TAGAAGACAATTTGATGATT+TGG | + | chr3.2:72690401-72690420 | MS.gene77538:CDS | 25.0% |
| !!! | AAGTTTTGATTTTTAACCTC+AGG | - | chr3.2:72690081-72690100 | None:intergenic | 25.0% |
| !!! | GAATACTTAGTTCTGTTTTT+TGG | - | chr3.2:72690897-72690916 | None:intergenic | 25.0% |
| !!! | GAATTTTTGTTTACTTTCAC+TGG | + | chr3.2:72690597-72690616 | MS.gene77538:CDS | 25.0% |
| !!! | TATTTCTGGAAGAATTTCTT+GGG | + | chr3.2:72690374-72690393 | MS.gene77538:CDS | 25.0% |
| !!! | TGATATTAGTCGTTTTCTTT+GGG | + | chr3.2:72690251-72690270 | MS.gene77538:CDS | 25.0% |
| !!! | TTATTTCTGGAAGAATTTCT+TGG | + | chr3.2:72690373-72690392 | MS.gene77538:CDS | 25.0% |
| !!! | TTGATATTAGTCGTTTTCTT+TGG | + | chr3.2:72690250-72690269 | MS.gene77538:CDS | 25.0% |
| !!! | TTTTGAACTTGTTAATTGGT+TGG | + | chr3.2:72690305-72690324 | MS.gene77538:CDS | 25.0% |
| AAAATGAAGATTCACTTAGG+GGG | + | chr3.2:72690634-72690653 | MS.gene77538:CDS | 30.0% | |
| AAAATTATTGAACAGTGTCG+TGG | + | chr3.2:72690657-72690676 | MS.gene77538:CDS | 30.0% | |
| AAATAGTTTATGCAGATCCT+AGG | + | chr3.2:72691036-72691055 | MS.gene77538:CDS | 30.0% | |
| AACACCTTCATAACATTAAC+AGG | - | chr3.2:72690738-72690757 | None:intergenic | 30.0% | |
| AACTTCATTTCATCCTTCAA+TGG | + | chr3.2:72690527-72690546 | MS.gene77538:CDS | 30.0% | |
| ATTGAAGGATGAAATGAAGT+TGG | - | chr3.2:72690528-72690547 | None:intergenic | 30.0% | |
| CAGCTTATTCACAATATAAG+TGG | + | chr3.2:72690865-72690884 | MS.gene77538:CDS | 30.0% | |
| CTGAAAATGAAGATTCACTT+AGG | + | chr3.2:72690631-72690650 | MS.gene77538:CDS | 30.0% | |
| GAAAATGAAGATTCACTTAG+GGG | + | chr3.2:72690633-72690652 | MS.gene77538:CDS | 30.0% | |
| TGAAAGGATTGAGAATGTAA+GGG | + | chr3.2:72691112-72691131 | MS.gene77538:CDS | 30.0% | |
| TGATCCTGTTAATGTTATGA+AGG | + | chr3.2:72690731-72690750 | MS.gene77538:CDS | 30.0% | |
| TTCTGTTTATATACCTGTGA+AGG | + | chr3.2:72690914-72690933 | MS.gene77538:CDS | 30.0% | |
| TTGAAAGGATTGAGAATGTA+AGG | + | chr3.2:72691111-72691130 | MS.gene77538:CDS | 30.0% | |
| ! | CTAAGTGAATCTTCATTTTC+AGG | - | chr3.2:72690633-72690652 | None:intergenic | 30.0% |
| ! | GCATTTGATTTAGCATTGAA+AGG | + | chr3.2:72691083-72691102 | MS.gene77538:CDS | 30.0% |
| ! | GGATCTGCATAAACTATTTT+CGG | - | chr3.2:72691035-72691054 | None:intergenic | 30.0% |
| ! | TAGCATACCAAGTATTGTTT+GGG | - | chr3.2:72690119-72690138 | None:intergenic | 30.0% |
| ! | TGGATAATGATGTTTTGCAA+TGG | + | chr3.2:72690547-72690566 | MS.gene77538:CDS | 30.0% |
| ! | TTCATTGATTGTAGTTATGG+TGG | + | chr3.2:72690696-72690715 | MS.gene77538:CDS | 30.0% |
| ! | TTTGATGATTTGGCTTATTG+GGG | + | chr3.2:72690411-72690430 | MS.gene77538:CDS | 30.0% |
| !! | AGGGATCATTTTCTTATTTC+TGG | + | chr3.2:72690360-72690379 | MS.gene77538:CDS | 30.0% |
| !! | GTTAATGTTATGAAGGTGTT+TGG | + | chr3.2:72690738-72690757 | MS.gene77538:CDS | 30.0% |
| !!! | CTGGTTTTGAACTTGTTAAT+TGG | + | chr3.2:72690301-72690320 | MS.gene77538:CDS | 30.0% |
| !!! | TGGAGGTTATTTTTCACAAT+AGG | + | chr3.2:72690154-72690173 | MS.gene77538:CDS | 30.0% |
| AAATAACCTCCAACAGAAAC+TGG | - | chr3.2:72690146-72690165 | None:intergenic | 35.0% | |
| ATGGAATGTTGATCTTGAGA+AGG | + | chr3.2:72690947-72690966 | MS.gene77538:CDS | 35.0% | |
| ATGTCAATGTTAGCAGTTGA+AGG | + | chr3.2:72690468-72690487 | MS.gene77538:CDS | 35.0% | |
| CTTATTGGGGTAGTAAGTTT+AGG | + | chr3.2:72690424-72690443 | MS.gene77538:CDS | 35.0% | |
| GGATGAAATGAAGTTGGATA+AGG | - | chr3.2:72690522-72690541 | None:intergenic | 35.0% | |
| TATTGTGAATAAGCTGTACC+AGG | - | chr3.2:72690861-72690880 | None:intergenic | 35.0% | |
| TTCTTGTCCCAAACAATACT+TGG | + | chr3.2:72690109-72690128 | MS.gene77538:CDS | 35.0% | |
| ! | GTAGCATACCAAGTATTGTT+TGG | - | chr3.2:72690120-72690139 | None:intergenic | 35.0% |
| AAACCCATGTTGTCCATGTA+CGG | - | chr3.2:72690054-72690073 | None:intergenic | 40.0% | |
| AAAGGGAAAGATCCTAGTGT+TGG | + | chr3.2:72691146-72691165 | MS.gene77538:CDS | 40.0% | |
| AACCTGAGTGGAAGAAAATG+TGG | + | chr3.2:72690334-72690353 | MS.gene77538:CDS | 40.0% | |
| ACCTGAGTGGAAGAAAATGT+GGG | + | chr3.2:72690335-72690354 | MS.gene77538:CDS | 40.0% | |
| AGAATGTAAGGGAAACAGTG+AGG | + | chr3.2:72691123-72691142 | MS.gene77538:CDS | 40.0% | |
| ATTGCAATAACCTCCTTCTC+TGG | - | chr3.2:72690987-72691006 | None:intergenic | 40.0% | |
| CATTCTTTCACATCCTTCAC+AGG | - | chr3.2:72690930-72690949 | None:intergenic | 40.0% | |
| CATTGAAAGGGATGCTTGAA+AGG | + | chr3.2:72691096-72691115 | MS.gene77538:CDS | 40.0% | |
| CTGTGAAGGATGTGAAAGAA+TGG | + | chr3.2:72690928-72690947 | MS.gene77538:CDS | 40.0% | |
| CTTACTGTGAGAGATTCATC+TGG | + | chr3.2:72690282-72690301 | MS.gene77538:CDS | 40.0% | |
| CTTGTGTATGAATCACCAGA+AGG | - | chr3.2:72690786-72690805 | None:intergenic | 40.0% | |
| GGTTATTGCAATGAGAGAAG+AGG | + | chr3.2:72690995-72691014 | MS.gene77538:CDS | 40.0% | |
| TAAGGGAAACAGTGAGGAAA+GGG | + | chr3.2:72691129-72691148 | MS.gene77538:CDS | 40.0% | |
| TACAAACCAGTTTCTGTTGG+AGG | + | chr3.2:72690137-72690156 | MS.gene77538:CDS | 40.0% | |
| TACATGGACAACATGGGTTT+AGG | + | chr3.2:72690054-72690073 | MS.gene77538:CDS | 40.0% | |
| TAGCAGTTGAAGGTAGTTCA+TGG | + | chr3.2:72690478-72690497 | MS.gene77538:CDS | 40.0% | |
| TCATCTGCAAAACCAACACT+AGG | - | chr3.2:72691161-72691180 | None:intergenic | 40.0% | |
| TGCTACAAACCAGTTTCTGT+TGG | + | chr3.2:72690134-72690153 | MS.gene77538:CDS | 40.0% | |
| ! | ATTCCTGTGTTTTTCCATCC+TGG | + | chr3.2:72690840-72690859 | MS.gene77538:CDS | 40.0% |
| !! | GAATCTTCATTTTCAGGCCT+TGG | - | chr3.2:72690627-72690646 | None:intergenic | 40.0% |
| !! | TGATCTTGAGAAGGTGTTGT+TGG | + | chr3.2:72690956-72690975 | MS.gene77538:CDS | 40.0% |
| AGTGGAAGAAAATGTGGGGT+AGG | + | chr3.2:72690340-72690359 | MS.gene77538:CDS | 45.0% | |
| CCTGAGTGGAAGAAAATGTG+GGG | + | chr3.2:72690336-72690355 | MS.gene77538:CDS | 45.0% | |
| GTAAGGGAAACAGTGAGGAA+AGG | + | chr3.2:72691128-72691147 | MS.gene77538:CDS | 45.0% | |
| GTACCAGGATGGAAAAACAC+AGG | - | chr3.2:72690846-72690865 | None:intergenic | 45.0% | |
| GTGAATAAGCTGTACCAGGA+TGG | - | chr3.2:72690857-72690876 | None:intergenic | 45.0% | |
| GTGGAAGAAAATGTGGGGTA+GGG | + | chr3.2:72690341-72690360 | MS.gene77538:CDS | 45.0% | |
| GTGTTCTCTTTGCAACCTTC+TGG | + | chr3.2:72690768-72690787 | MS.gene77538:CDS | 45.0% | |
| GTTGTTGGCAATTCCAGAGA+AGG | + | chr3.2:72690971-72690990 | MS.gene77538:CDS | 45.0% | |
| TGTCCGTACATGGACAACAT+GGG | + | chr3.2:72690048-72690067 | MS.gene77538:CDS | 45.0% | |
| ! | GGTTGGTTGAAAAACCTGAG+TGG | + | chr3.2:72690322-72690341 | MS.gene77538:CDS | 45.0% |
| ! | TTACTTTCACTGGAGCACCA+AGG | + | chr3.2:72690607-72690626 | MS.gene77538:CDS | 45.0% |
| CAACATGGGTTTAGGTCCTG+AGG | + | chr3.2:72690062-72690081 | MS.gene77538:CDS | 50.0% | |
| GTGTCCGTACATGGACAACA+TGG | + | chr3.2:72690047-72690066 | MS.gene77538:CDS | 50.0% | |
| GTTGGCAATTCCAGAGAAGG+AGG | + | chr3.2:72690974-72690993 | MS.gene77538:CDS | 50.0% | |
| TTGAACAGTGTCGTGGTTCG+AGG | + | chr3.2:72690664-72690683 | MS.gene77538:CDS | 50.0% | |
| ! | CCCCACATTTTCTTCCACTC+AGG | - | chr3.2:72690339-72690358 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 72690045 | 72691208 | 72690045 | ID=MS.gene77538 |
| chr3.2 | mRNA | 72690045 | 72691208 | 72690045 | ID=MS.gene77538.t1;Parent=MS.gene77538 |
| chr3.2 | exon | 72690045 | 72691208 | 72690045 | ID=MS.gene77538.t1.exon1;Parent=MS.gene77538.t1 |
| chr3.2 | CDS | 72690045 | 72691208 | 72690045 | ID=cds.MS.gene77538.t1;Parent=MS.gene77538.t1 |
| Gene Sequence |
| Protein sequence |
