Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045350.t1 | XP_003601693.1 | 98.2 | 387 | 7 | 0 | 1 | 387 | 98 | 484 | 1.00E-230 | 808.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045350.t1 | Q84R16 | 57.0 | 388 | 163 | 3 | 1 | 387 | 128 | 512 | 3.9e-130 | 466.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045350.t1 | G7JAS7 | 98.2 | 387 | 7 | 0 | 1 | 387 | 98 | 484 | 7.3e-231 | 808.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045350 | MS.gene001404 | PPI |
| MS.gene045350 | MS.gene036481 | PPI |
| MS.gene045350 | MS.gene067185 | PPI |
| MS.gene026309 | MS.gene045350 | PPI |
| MS.gene045350 | MS.gene041562 | PPI |
| MS.gene045350 | MS.gene32945 | PPI |
| MS.gene035337 | MS.gene045350 | PPI |
| MS.gene58506 | MS.gene045350 | PPI |
| MS.gene32944 | MS.gene045350 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045350.t1 | MTR_3g084400 | 98.191 | 387 | 7 | 0 | 1 | 387 | 98 | 484 | 0.0 | 799 |
| MS.gene045350.t1 | MTR_7g098650 | 55.039 | 387 | 169 | 3 | 1 | 386 | 110 | 492 | 2.39e-160 | 461 |
| MS.gene045350.t1 | MTR_1g069460 | 53.230 | 387 | 176 | 3 | 1 | 386 | 185 | 567 | 3.17e-156 | 453 |
| MS.gene045350.t1 | MTR_4g129930 | 55.890 | 365 | 158 | 2 | 1 | 363 | 102 | 465 | 3.68e-154 | 443 |
| MS.gene045350.t1 | MTR_5g055350 | 52.432 | 370 | 163 | 4 | 1 | 363 | 83 | 446 | 1.40e-145 | 420 |
| MS.gene045350.t1 | MTR_5g095940 | 52.151 | 372 | 172 | 3 | 1 | 367 | 125 | 495 | 1.96e-139 | 406 |
| MS.gene045350.t1 | MTR_3g007840 | 50.000 | 376 | 159 | 4 | 1 | 371 | 53 | 404 | 1.50e-131 | 384 |
| MS.gene045350.t1 | MTR_5g095950 | 46.809 | 376 | 163 | 4 | 1 | 371 | 98 | 441 | 2.98e-119 | 355 |
| MS.gene045350.t1 | MTR_1g035730 | 42.340 | 359 | 194 | 3 | 1 | 356 | 103 | 451 | 9.73e-95 | 291 |
| MS.gene045350.t1 | MTR_1g102430 | 42.779 | 367 | 194 | 9 | 2 | 360 | 132 | 490 | 1.74e-90 | 281 |
| MS.gene045350.t1 | MTR_5g010370 | 39.674 | 368 | 205 | 7 | 2 | 364 | 192 | 547 | 1.95e-88 | 277 |
| MS.gene045350.t1 | MTR_5g010350 | 40.379 | 369 | 201 | 8 | 2 | 364 | 168 | 523 | 1.48e-83 | 264 |
| MS.gene045350.t1 | MTR_4g119810 | 38.281 | 384 | 204 | 10 | 1 | 361 | 73 | 446 | 5.81e-79 | 250 |
| MS.gene045350.t1 | MTR_4g077920 | 23.630 | 292 | 184 | 12 | 89 | 370 | 155 | 417 | 4.91e-11 | 64.3 |
| MS.gene045350.t1 | MTR_4g077920 | 23.630 | 292 | 184 | 12 | 89 | 370 | 213 | 475 | 5.89e-11 | 64.3 |
| MS.gene045350.t1 | MTR_4g077920 | 27.174 | 184 | 117 | 7 | 89 | 269 | 213 | 382 | 9.94e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045350.t1 | AT4G13990 | 66.237 | 388 | 127 | 3 | 1 | 387 | 128 | 512 | 0.0 | 548 |
| MS.gene045350.t1 | AT4G13990 | 66.237 | 388 | 127 | 3 | 1 | 387 | 128 | 512 | 0.0 | 548 |
| MS.gene045350.t1 | AT2G20370 | 53.230 | 387 | 177 | 2 | 1 | 386 | 182 | 565 | 3.92e-158 | 459 |
| MS.gene045350.t1 | AT2G32750 | 53.600 | 375 | 168 | 3 | 1 | 371 | 114 | 486 | 2.11e-149 | 432 |
| MS.gene045350.t1 | AT2G32750 | 53.600 | 375 | 168 | 3 | 1 | 371 | 116 | 488 | 2.25e-149 | 432 |
| MS.gene045350.t1 | AT2G29040 | 53.213 | 389 | 171 | 4 | 1 | 384 | 330 | 712 | 5.54e-145 | 429 |
| MS.gene045350.t1 | AT2G31990 | 52.561 | 371 | 164 | 7 | 1 | 363 | 114 | 480 | 3.11e-139 | 405 |
| MS.gene045350.t1 | AT2G31990 | 52.561 | 371 | 164 | 7 | 1 | 363 | 106 | 472 | 3.75e-139 | 405 |
| MS.gene045350.t1 | AT2G31990 | 52.547 | 373 | 161 | 8 | 1 | 363 | 152 | 518 | 1.17e-138 | 405 |
| MS.gene045350.t1 | AT2G32740 | 50.000 | 364 | 175 | 4 | 2 | 359 | 98 | 460 | 3.59e-131 | 384 |
| MS.gene045350.t1 | AT5G41250 | 41.989 | 362 | 194 | 6 | 1 | 359 | 208 | 556 | 3.69e-96 | 298 |
| MS.gene045350.t1 | AT1G68470 | 41.274 | 361 | 196 | 5 | 1 | 358 | 99 | 446 | 6.59e-95 | 291 |
| MS.gene045350.t1 | AT5G62220 | 40.437 | 366 | 204 | 8 | 2 | 360 | 150 | 508 | 1.65e-90 | 282 |
| MS.gene045350.t1 | AT1G63450 | 42.000 | 350 | 194 | 7 | 15 | 359 | 315 | 660 | 3.21e-87 | 278 |
| MS.gene045350.t1 | AT4G22580 | 39.037 | 374 | 203 | 10 | 1 | 359 | 68 | 431 | 8.50e-81 | 254 |
Find 73 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGATGATTTGGCTTATT+GGG | 0.218270 | 3.4:+79036425 | MS.gene045350:CDS |
| AATTTGATGATTTGGCTTAT+TGG | 0.229453 | 3.4:+79036424 | MS.gene045350:CDS |
| TAGAAGACAATTTGATGATT+TGG | 0.240067 | 3.4:+79036416 | MS.gene045350:CDS |
| GTGTTCTCTTTGCAACCTTC+TGG | 0.263061 | 3.4:+79036783 | MS.gene045350:CDS |
| CTTATTGGGGTAGTAAGTTT+AGG | 0.286674 | 3.4:+79036439 | MS.gene045350:CDS |
| AACACCTTCATAACATTAAC+AGG | 0.333473 | 3.4:-79036750 | None:intergenic |
| TTATTTCTGGAAGAATTTCT+TGG | 0.334479 | 3.4:+79036388 | MS.gene045350:CDS |
| GTAGCATACCAAGTATTGTT+TGG | 0.367244 | 3.4:-79036132 | None:intergenic |
| ATAAACAGAATACTTAGTTC+TGG | 0.368563 | 3.4:-79036916 | None:intergenic |
| TAGCATACCAAGTATTGTTT+GGG | 0.381452 | 3.4:-79036131 | None:intergenic |
| GTTAATGTTATGAAGGTGTT+TGG | 0.381876 | 3.4:+79036753 | MS.gene045350:CDS |
| AAATAACCTCCAACAGAAAC+TGG | 0.384297 | 3.4:-79036158 | None:intergenic |
| TTGAAAGGATTGAGAATGTA+AGG | 0.389756 | 3.4:+79037126 | MS.gene045350:CDS |
| AACTTCATTTCATCCTTCAA+TGG | 0.405756 | 3.4:+79036542 | MS.gene045350:CDS |
| TATTTCTGGAAGAATTTCTT+GGG | 0.408231 | 3.4:+79036389 | MS.gene045350:CDS |
| AAATTCATTGATTGTAGTTA+TGG | 0.414533 | 3.4:+79036708 | MS.gene045350:CDS |
| ATTGACATATTCATAGATTC+AGG | 0.419427 | 3.4:-79036468 | None:intergenic |
| TACATGGACAACATGGGTTT+AGG | 0.430952 | 3.4:+79036069 | MS.gene045350:CDS |
| GTAAGGGAAACAATGAGAAA+AGG | 0.431105 | 3.4:+79037143 | MS.gene045350:CDS |
| AAAACATCATTATCCATTGA+AGG | 0.431263 | 3.4:-79036555 | None:intergenic |
| TTCTTGTCCCAAACAATACT+TGG | 0.433179 | 3.4:+79036124 | MS.gene045350:CDS |
| GTAAAATTAGACATCAAAAG+AGG | 0.433677 | 3.4:+79036589 | MS.gene045350:CDS |
| CATTGAAAGGGATGCTTGAA+AGG | 0.434984 | 3.4:+79037111 | MS.gene045350:CDS |
| TAGCAGTTGAAGGTAGTTCA+TGG | 0.438552 | 3.4:+79036493 | MS.gene045350:CDS |
| TAAGGGAAACAATGAGAAAA+GGG | 0.440498 | 3.4:+79037144 | MS.gene045350:CDS |
| CTGAAAATGAAGATTCACTT+AGG | 0.454464 | 3.4:+79036646 | MS.gene045350:CDS |
| ATTGCAATAACCTCCTTCTC+TGG | 0.454824 | 3.4:-79036999 | None:intergenic |
| TGAAAATGAAGATTCACTTA+GGG | 0.470090 | 3.4:+79036647 | MS.gene045350:CDS |
| CATTCTTTCACATCCTTCAC+AGG | 0.472787 | 3.4:-79036942 | None:intergenic |
| TACAAACCAGTTTCTGTTGG+AGG | 0.472878 | 3.4:+79036152 | MS.gene045350:CDS |
| TTGAACAGTGTCGTGGTTCG+AGG | 0.476726 | 3.4:+79036679 | MS.gene045350:CDS |
| GTGTCCGTACATGGACAACA+TGG | 0.477539 | 3.4:+79036062 | MS.gene045350:CDS |
| ATGTCAATGTTAGCAGTTGA+AGG | 0.477882 | 3.4:+79036483 | MS.gene045350:CDS |
| ACCAAACATGTGTCCGTACA+TGG | 0.478151 | 3.4:+79036053 | None:intergenic |
| CTTACTGTGAGAGATTCATC+TGG | 0.479511 | 3.4:+79036297 | MS.gene045350:CDS |
| GGATGAAATGAAGTTGGATA+AGG | 0.492206 | 3.4:-79036534 | None:intergenic |
| GCATTTGATTTAGCATTGAA+AGG | 0.493200 | 3.4:+79037098 | MS.gene045350:CDS |
| TGATCTTGAGAAGGTGTTGT+TGG | 0.496751 | 3.4:+79036971 | MS.gene045350:CDS |
| ATTGAAGGATGAAATGAAGT+TGG | 0.497621 | 3.4:-79036540 | None:intergenic |
| CATTTGATTTAGCATTGAAA+GGG | 0.501892 | 3.4:+79037099 | MS.gene045350:CDS |
| TTCATTGATTGTAGTTATGG+TGG | 0.506008 | 3.4:+79036711 | MS.gene045350:CDS |
| AAATAGTTTATGCAGATCCT+AGG | 0.507340 | 3.4:+79037051 | MS.gene045350:CDS |
| TGCTACAAACCAGTTTCTGT+TGG | 0.515202 | 3.4:+79036149 | MS.gene045350:CDS |
| AAACCCATGTTGTCCATGTA+CGG | 0.517484 | 3.4:-79036066 | None:intergenic |
| GAAAATGAAGATTCACTTAG+GGG | 0.522755 | 3.4:+79036648 | MS.gene045350:CDS |
| CTGTGAAGGATGTGAAAGAA+TGG | 0.525377 | 3.4:+79036943 | MS.gene045350:CDS |
| CAGCTTATTCACAATATAAG+TGG | 0.534716 | 3.4:+79036880 | MS.gene045350:CDS |
| TTCTGTTTATATACCTGTGA+AGG | 0.538892 | 3.4:+79036929 | MS.gene045350:CDS |
| GGTTATTGCAATGAGAGAAG+AGG | 0.546024 | 3.4:+79037010 | MS.gene045350:CDS |
| AACCTGAGTGGAAGAAAATG+TGG | 0.546802 | 3.4:+79036349 | MS.gene045350:CDS |
| AGTGGAAGAAAATGTGGGGT+AGG | 0.554745 | 3.4:+79036355 | MS.gene045350:CDS |
| AAATTATCTAACTTAGACCT+AGG | 0.558142 | 3.4:-79037068 | None:intergenic |
| AAAGGGAAAGATCCTAGTGT+TGG | 0.565330 | 3.4:+79037161 | MS.gene045350:CDS |
| GTTGTTGGCAATTCCAGAGA+AGG | 0.568274 | 3.4:+79036986 | MS.gene045350:CDS |
| TAAAATTAGACATCAAAAGA+GGG | 0.575852 | 3.4:+79036590 | MS.gene045350:CDS |
| GTGGAAGAAAATGTGGGGTA+GGG | 0.579581 | 3.4:+79036356 | MS.gene045350:CDS |
| GTGAATAAGCTGTACCAGGA+TGG | 0.582028 | 3.4:-79036869 | None:intergenic |
| ATATCAAGACCAATATAAGA+AGG | 0.583352 | 3.4:-79036249 | None:intergenic |
| TGATCCTGTTAATGTTATGA+AGG | 0.583549 | 3.4:+79036746 | MS.gene045350:CDS |
| TTTGATGATTTGGCTTATTG+GGG | 0.583833 | 3.4:+79036426 | MS.gene045350:CDS |
| ACCTGAGTGGAAGAAAATGT+GGG | 0.590852 | 3.4:+79036350 | MS.gene045350:CDS |
| GTTGGCAATTCCAGAGAAGG+AGG | 0.593293 | 3.4:+79036989 | MS.gene045350:CDS |
| TATTGTGAATAAGCTGTACC+AGG | 0.602648 | 3.4:-79036873 | None:intergenic |
| CAACATGGGTTTAGGTCCTG+AGG | 0.604586 | 3.4:+79036077 | MS.gene045350:CDS |
| TCATCTGCAAAACCAACACT+AGG | 0.607957 | 3.4:-79037173 | None:intergenic |
| TGAAAGGATTGAGAATGTAA+GGG | 0.616462 | 3.4:+79037127 | MS.gene045350:CDS |
| AAAATTATTGAACAGTGTCG+TGG | 0.616891 | 3.4:+79036672 | MS.gene045350:CDS |
| CTTGTGTATGAATCACCAGA+AGG | 0.625417 | 3.4:-79036798 | None:intergenic |
| ATGGAATGTTGATCTTGAGA+AGG | 0.656630 | 3.4:+79036962 | MS.gene045350:CDS |
| AAAATGAAGATTCACTTAGG+GGG | 0.656953 | 3.4:+79036649 | MS.gene045350:CDS |
| TGTCCGTACATGGACAACAT+GGG | 0.661617 | 3.4:+79036063 | MS.gene045350:CDS |
| TTACTTTCACTGGAGCACCA+AGG | 0.715571 | 3.4:+79036622 | MS.gene045350:CDS |
| CCTGAGTGGAAGAAAATGTG+GGG | 0.730427 | 3.4:+79036351 | MS.gene045350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGTTAAAAATCAAAACTTTA+AGG | + | chr3.4:79036098-79036117 | MS.gene045350:CDS | 20.0% |
| !! | TAAAATTAGACATCAAAAGA+GGG | + | chr3.4:79036590-79036609 | MS.gene045350:CDS | 20.0% |
| !!! | AAATTCATTGATTGTAGTTA+TGG | + | chr3.4:79036708-79036727 | MS.gene045350:CDS | 20.0% |
| !!! | ATTTTTGATTCAATTTTAGC+TGG | + | chr3.4:79036828-79036847 | MS.gene045350:CDS | 20.0% |
| ! | AAAACATCATTATCCATTGA+AGG | - | chr3.4:79036558-79036577 | None:intergenic | 25.0% |
| ! | AAATTATCTAACTTAGACCT+AGG | - | chr3.4:79037071-79037090 | None:intergenic | 25.0% |
| ! | ATAAACAGAATACTTAGTTC+TGG | - | chr3.4:79036919-79036938 | None:intergenic | 25.0% |
| ! | ATATCAAGACCAATATAAGA+AGG | - | chr3.4:79036252-79036271 | None:intergenic | 25.0% |
| ! | ATTGACATATTCATAGATTC+AGG | - | chr3.4:79036471-79036490 | None:intergenic | 25.0% |
| ! | GTAAAATTAGACATCAAAAG+AGG | + | chr3.4:79036589-79036608 | MS.gene045350:CDS | 25.0% |
| ! | TGAAAATGAAGATTCACTTA+GGG | + | chr3.4:79036647-79036666 | MS.gene045350:CDS | 25.0% |
| !! | AATTTGATGATTTGGCTTAT+TGG | + | chr3.4:79036424-79036443 | MS.gene045350:CDS | 25.0% |
| !! | ATTTGATGATTTGGCTTATT+GGG | + | chr3.4:79036425-79036444 | MS.gene045350:CDS | 25.0% |
| !! | CATTTGATTTAGCATTGAAA+GGG | + | chr3.4:79037099-79037118 | MS.gene045350:CDS | 25.0% |
| !! | GTTTTTGTTCCTTCTTATAT+TGG | + | chr3.4:79036240-79036259 | MS.gene045350:CDS | 25.0% |
| !! | TAGAAGACAATTTGATGATT+TGG | + | chr3.4:79036416-79036435 | MS.gene045350:CDS | 25.0% |
| !!! | AAGTTTTGATTTTTAACCTC+AGG | - | chr3.4:79036096-79036115 | None:intergenic | 25.0% |
| !!! | GAATTTTTGTTTACTTTCAC+TGG | + | chr3.4:79036612-79036631 | MS.gene045350:CDS | 25.0% |
| !!! | TATTTCTGGAAGAATTTCTT+GGG | + | chr3.4:79036389-79036408 | MS.gene045350:CDS | 25.0% |
| !!! | TGATATTAGTCGTTTTCTTT+GGG | + | chr3.4:79036266-79036285 | MS.gene045350:CDS | 25.0% |
| !!! | TTATTTCTGGAAGAATTTCT+TGG | + | chr3.4:79036388-79036407 | MS.gene045350:CDS | 25.0% |
| !!! | TTGATATTAGTCGTTTTCTT+TGG | + | chr3.4:79036265-79036284 | MS.gene045350:CDS | 25.0% |
| !!! | TTTTGAACTTGTTAATTGGT+TGG | + | chr3.4:79036320-79036339 | MS.gene045350:CDS | 25.0% |
| AAAATGAAGATTCACTTAGG+GGG | + | chr3.4:79036649-79036668 | MS.gene045350:CDS | 30.0% | |
| AAAATTATTGAACAGTGTCG+TGG | + | chr3.4:79036672-79036691 | MS.gene045350:CDS | 30.0% | |
| AAATAGTTTATGCAGATCCT+AGG | + | chr3.4:79037051-79037070 | MS.gene045350:CDS | 30.0% | |
| AACACCTTCATAACATTAAC+AGG | - | chr3.4:79036753-79036772 | None:intergenic | 30.0% | |
| AACTTCATTTCATCCTTCAA+TGG | + | chr3.4:79036542-79036561 | MS.gene045350:CDS | 30.0% | |
| ATTGAAGGATGAAATGAAGT+TGG | - | chr3.4:79036543-79036562 | None:intergenic | 30.0% | |
| CAGCTTATTCACAATATAAG+TGG | + | chr3.4:79036880-79036899 | MS.gene045350:CDS | 30.0% | |
| CTGAAAATGAAGATTCACTT+AGG | + | chr3.4:79036646-79036665 | MS.gene045350:CDS | 30.0% | |
| GAAAATGAAGATTCACTTAG+GGG | + | chr3.4:79036648-79036667 | MS.gene045350:CDS | 30.0% | |
| TAAGGGAAACAATGAGAAAA+GGG | + | chr3.4:79037144-79037163 | MS.gene045350:CDS | 30.0% | |
| TGAAAGGATTGAGAATGTAA+GGG | + | chr3.4:79037127-79037146 | MS.gene045350:CDS | 30.0% | |
| TGATCCTGTTAATGTTATGA+AGG | + | chr3.4:79036746-79036765 | MS.gene045350:CDS | 30.0% | |
| TTCTGTTTATATACCTGTGA+AGG | + | chr3.4:79036929-79036948 | MS.gene045350:CDS | 30.0% | |
| TTGAAAGGATTGAGAATGTA+AGG | + | chr3.4:79037126-79037145 | MS.gene045350:CDS | 30.0% | |
| ! | CTAAGTGAATCTTCATTTTC+AGG | - | chr3.4:79036648-79036667 | None:intergenic | 30.0% |
| ! | GCATTTGATTTAGCATTGAA+AGG | + | chr3.4:79037098-79037117 | MS.gene045350:CDS | 30.0% |
| ! | GGATCTGCATAAACTATTTT+TGG | - | chr3.4:79037050-79037069 | None:intergenic | 30.0% |
| ! | TAGCATACCAAGTATTGTTT+GGG | - | chr3.4:79036134-79036153 | None:intergenic | 30.0% |
| ! | TGGATAATGATGTTTTGCAA+TGG | + | chr3.4:79036562-79036581 | MS.gene045350:CDS | 30.0% |
| ! | TTCATTGATTGTAGTTATGG+TGG | + | chr3.4:79036711-79036730 | MS.gene045350:CDS | 30.0% |
| ! | TTTGATGATTTGGCTTATTG+GGG | + | chr3.4:79036426-79036445 | MS.gene045350:CDS | 30.0% |
| !! | AGGGATCATTTTCTTATTTC+TGG | + | chr3.4:79036375-79036394 | MS.gene045350:CDS | 30.0% |
| !! | GTTAATGTTATGAAGGTGTT+TGG | + | chr3.4:79036753-79036772 | MS.gene045350:CDS | 30.0% |
| !!! | CTGGTTTTGAACTTGTTAAT+TGG | + | chr3.4:79036316-79036335 | MS.gene045350:CDS | 30.0% |
| !!! | GAATACTTAGTTCTGGTTTT+TGG | - | chr3.4:79036912-79036931 | None:intergenic | 30.0% |
| !!! | TGGAGGTTATTTTTCACAAT+AGG | + | chr3.4:79036169-79036188 | MS.gene045350:CDS | 30.0% |
| AAATAACCTCCAACAGAAAC+TGG | - | chr3.4:79036161-79036180 | None:intergenic | 35.0% | |
| ATGGAATGTTGATCTTGAGA+AGG | + | chr3.4:79036962-79036981 | MS.gene045350:CDS | 35.0% | |
| ATGTCAATGTTAGCAGTTGA+AGG | + | chr3.4:79036483-79036502 | MS.gene045350:CDS | 35.0% | |
| CTTATTGGGGTAGTAAGTTT+AGG | + | chr3.4:79036439-79036458 | MS.gene045350:CDS | 35.0% | |
| GGATGAAATGAAGTTGGATA+AGG | - | chr3.4:79036537-79036556 | None:intergenic | 35.0% | |
| GTAAGGGAAACAATGAGAAA+AGG | + | chr3.4:79037143-79037162 | MS.gene045350:CDS | 35.0% | |
| TATTGTGAATAAGCTGTACC+AGG | - | chr3.4:79036876-79036895 | None:intergenic | 35.0% | |
| TTCTTGTCCCAAACAATACT+TGG | + | chr3.4:79036124-79036143 | MS.gene045350:CDS | 35.0% | |
| ! | GTAGCATACCAAGTATTGTT+TGG | - | chr3.4:79036135-79036154 | None:intergenic | 35.0% |
| AAACCCATGTTGTCCATGTA+CGG | - | chr3.4:79036069-79036088 | None:intergenic | 40.0% | |
| AAAGGGAAAGATCCTAGTGT+TGG | + | chr3.4:79037161-79037180 | MS.gene045350:CDS | 40.0% | |
| AACCTGAGTGGAAGAAAATG+TGG | + | chr3.4:79036349-79036368 | MS.gene045350:CDS | 40.0% | |
| ACCTGAGTGGAAGAAAATGT+GGG | + | chr3.4:79036350-79036369 | MS.gene045350:CDS | 40.0% | |
| ATTGCAATAACCTCCTTCTC+TGG | - | chr3.4:79037002-79037021 | None:intergenic | 40.0% | |
| CATTCTTTCACATCCTTCAC+AGG | - | chr3.4:79036945-79036964 | None:intergenic | 40.0% | |
| CATTGAAAGGGATGCTTGAA+AGG | + | chr3.4:79037111-79037130 | MS.gene045350:CDS | 40.0% | |
| CTGTGAAGGATGTGAAAGAA+TGG | + | chr3.4:79036943-79036962 | MS.gene045350:CDS | 40.0% | |
| CTTACTGTGAGAGATTCATC+TGG | + | chr3.4:79036297-79036316 | MS.gene045350:CDS | 40.0% | |
| CTTGTGTATGAATCACCAGA+AGG | - | chr3.4:79036801-79036820 | None:intergenic | 40.0% | |
| GGTTATTGCAATGAGAGAAG+AGG | + | chr3.4:79037010-79037029 | MS.gene045350:CDS | 40.0% | |
| TACAAACCAGTTTCTGTTGG+AGG | + | chr3.4:79036152-79036171 | MS.gene045350:CDS | 40.0% | |
| TACATGGACAACATGGGTTT+AGG | + | chr3.4:79036069-79036088 | MS.gene045350:CDS | 40.0% | |
| TAGCAGTTGAAGGTAGTTCA+TGG | + | chr3.4:79036493-79036512 | MS.gene045350:CDS | 40.0% | |
| TCATCTGCAAAACCAACACT+AGG | - | chr3.4:79037176-79037195 | None:intergenic | 40.0% | |
| TGCTACAAACCAGTTTCTGT+TGG | + | chr3.4:79036149-79036168 | MS.gene045350:CDS | 40.0% | |
| ! | ATTCCTGTGTTTTTCCATCC+TGG | + | chr3.4:79036855-79036874 | MS.gene045350:CDS | 40.0% |
| !! | GAATCTTCATTTTCAGGCCT+TGG | - | chr3.4:79036642-79036661 | None:intergenic | 40.0% |
| !! | TGATCTTGAGAAGGTGTTGT+TGG | + | chr3.4:79036971-79036990 | MS.gene045350:CDS | 40.0% |
| AGTGGAAGAAAATGTGGGGT+AGG | + | chr3.4:79036355-79036374 | MS.gene045350:CDS | 45.0% | |
| CCTGAGTGGAAGAAAATGTG+GGG | + | chr3.4:79036351-79036370 | MS.gene045350:CDS | 45.0% | |
| GTACCAGGATGGAAAAACAC+AGG | - | chr3.4:79036861-79036880 | None:intergenic | 45.0% | |
| GTGAATAAGCTGTACCAGGA+TGG | - | chr3.4:79036872-79036891 | None:intergenic | 45.0% | |
| GTGGAAGAAAATGTGGGGTA+GGG | + | chr3.4:79036356-79036375 | MS.gene045350:CDS | 45.0% | |
| GTGTTCTCTTTGCAACCTTC+TGG | + | chr3.4:79036783-79036802 | MS.gene045350:CDS | 45.0% | |
| GTTGTTGGCAATTCCAGAGA+AGG | + | chr3.4:79036986-79037005 | MS.gene045350:CDS | 45.0% | |
| TGTCCGTACATGGACAACAT+GGG | + | chr3.4:79036063-79036082 | MS.gene045350:CDS | 45.0% | |
| ! | GGTTGGTTGAAAAACCTGAG+TGG | + | chr3.4:79036337-79036356 | MS.gene045350:CDS | 45.0% |
| ! | TTACTTTCACTGGAGCACCA+AGG | + | chr3.4:79036622-79036641 | MS.gene045350:CDS | 45.0% |
| CAACATGGGTTTAGGTCCTG+AGG | + | chr3.4:79036077-79036096 | MS.gene045350:CDS | 50.0% | |
| GTGTCCGTACATGGACAACA+TGG | + | chr3.4:79036062-79036081 | MS.gene045350:CDS | 50.0% | |
| GTTGGCAATTCCAGAGAAGG+AGG | + | chr3.4:79036989-79037008 | MS.gene045350:CDS | 50.0% | |
| TTGAACAGTGTCGTGGTTCG+AGG | + | chr3.4:79036679-79036698 | MS.gene045350:CDS | 50.0% | |
| ! | CCCCACATTTTCTTCCACTC+AGG | - | chr3.4:79036354-79036373 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 79036060 | 79037223 | 79036060 | ID=MS.gene045350 |
| chr3.4 | mRNA | 79036060 | 79037223 | 79036060 | ID=MS.gene045350.t1;Parent=MS.gene045350 |
| chr3.4 | exon | 79036060 | 79037223 | 79036060 | ID=MS.gene045350.t1.exon1;Parent=MS.gene045350.t1 |
| chr3.4 | CDS | 79036060 | 79037223 | 79036060 | ID=cds.MS.gene045350.t1;Parent=MS.gene045350.t1 |
| Gene Sequence |
| Protein sequence |
