Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036481.t1 | XP_003609665.1 | 91.7 | 456 | 35 | 2 | 1 | 454 | 1 | 455 | 1.10E-249 | 872.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036481.t1 | Q9SUW1 | 67.8 | 407 | 123 | 2 | 41 | 447 | 37 | 435 | 5.9e-170 | 598.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036481.t1 | G7JLG7 | 91.7 | 456 | 35 | 2 | 1 | 454 | 1 | 455 | 8.2e-250 | 872.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32944 | MS.gene036481 | PPI |
| MS.gene045350 | MS.gene036481 | PPI |
| MS.gene067185 | MS.gene036481 | PPI |
| MS.gene036481 | MS.gene77538 | PPI |
| MS.gene036481 | MS.gene32945 | PPI |
| MS.gene026309 | MS.gene036481 | PPI |
| MS.gene75663 | MS.gene036481 | PPI |
| MS.gene001404 | MS.gene036481 | PPI |
| MS.gene79900 | MS.gene036481 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036481.t1 | MTR_4g119810 | 97.143 | 455 | 12 | 1 | 1 | 454 | 1 | 455 | 0.0 | 918 |
| MS.gene036481.t1 | MTR_7g098650 | 38.278 | 418 | 233 | 10 | 31 | 443 | 69 | 466 | 2.04e-85 | 272 |
| MS.gene036481.t1 | MTR_3g084400 | 38.208 | 424 | 226 | 11 | 35 | 445 | 58 | 458 | 2.26e-85 | 270 |
| MS.gene036481.t1 | MTR_1g069460 | 37.123 | 431 | 239 | 11 | 18 | 443 | 138 | 541 | 2.58e-83 | 268 |
| MS.gene036481.t1 | MTR_5g055350 | 38.609 | 417 | 216 | 11 | 41 | 443 | 52 | 442 | 2.91e-83 | 263 |
| MS.gene036481.t1 | MTR_4g129930 | 37.273 | 440 | 240 | 10 | 20 | 445 | 46 | 463 | 3.29e-81 | 259 |
| MS.gene036481.t1 | MTR_1g102430 | 35.308 | 422 | 244 | 7 | 35 | 448 | 94 | 494 | 4.86e-78 | 251 |
| MS.gene036481.t1 | MTR_5g095940 | 35.377 | 424 | 241 | 8 | 41 | 452 | 94 | 496 | 1.92e-77 | 250 |
| MS.gene036481.t1 | MTR_5g010370 | 31.532 | 444 | 275 | 9 | 2 | 443 | 126 | 542 | 2.59e-75 | 246 |
| MS.gene036481.t1 | MTR_3g007840 | 33.562 | 438 | 233 | 9 | 27 | 450 | 6 | 399 | 1.14e-72 | 235 |
| MS.gene036481.t1 | MTR_5g010350 | 32.667 | 450 | 273 | 10 | 2 | 449 | 102 | 523 | 2.77e-72 | 237 |
| MS.gene036481.t1 | MTR_1g035730 | 35.768 | 397 | 227 | 10 | 46 | 438 | 77 | 449 | 2.77e-71 | 233 |
| MS.gene036481.t1 | MTR_5g095950 | 29.911 | 448 | 247 | 13 | 18 | 450 | 41 | 436 | 3.30e-54 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036481.t1 | AT4G22580 | 68.675 | 415 | 122 | 2 | 33 | 447 | 29 | 435 | 0.0 | 600 |
| MS.gene036481.t1 | AT4G13990 | 39.614 | 414 | 221 | 9 | 38 | 443 | 92 | 484 | 9.68e-92 | 288 |
| MS.gene036481.t1 | AT4G13990 | 39.614 | 414 | 221 | 9 | 38 | 443 | 92 | 484 | 9.68e-92 | 288 |
| MS.gene036481.t1 | AT2G29040 | 38.208 | 424 | 237 | 9 | 33 | 449 | 291 | 696 | 4.39e-90 | 289 |
| MS.gene036481.t1 | AT2G32750 | 36.136 | 440 | 243 | 13 | 20 | 443 | 59 | 476 | 1.94e-86 | 273 |
| MS.gene036481.t1 | AT2G32750 | 36.136 | 440 | 243 | 13 | 20 | 443 | 57 | 474 | 3.42e-86 | 273 |
| MS.gene036481.t1 | AT2G31990 | 37.767 | 421 | 232 | 11 | 35 | 443 | 66 | 468 | 1.72e-84 | 268 |
| MS.gene036481.t1 | AT2G31990 | 37.767 | 421 | 232 | 11 | 35 | 443 | 74 | 476 | 2.59e-84 | 267 |
| MS.gene036481.t1 | AT2G31990 | 37.767 | 421 | 232 | 11 | 35 | 443 | 112 | 514 | 5.41e-84 | 268 |
| MS.gene036481.t1 | AT2G20370 | 37.440 | 414 | 233 | 11 | 41 | 449 | 151 | 543 | 1.52e-82 | 266 |
| MS.gene036481.t1 | AT5G62220 | 35.252 | 417 | 241 | 7 | 38 | 446 | 115 | 510 | 5.40e-79 | 254 |
| MS.gene036481.t1 | AT2G32740 | 33.925 | 451 | 256 | 14 | 10 | 443 | 35 | 460 | 4.31e-78 | 251 |
| MS.gene036481.t1 | AT5G41250 | 33.827 | 405 | 241 | 9 | 41 | 443 | 177 | 556 | 3.21e-75 | 246 |
| MS.gene036481.t1 | AT1G63450 | 33.911 | 404 | 244 | 7 | 41 | 443 | 279 | 660 | 2.01e-72 | 241 |
| MS.gene036481.t1 | AT1G68470 | 32.045 | 440 | 263 | 12 | 13 | 447 | 43 | 451 | 3.03e-71 | 233 |
Find 108 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATACTCCGCCGGATATT+TGG | 0.193332 | 8.1:+8538531 | None:intergenic |
| ATTGGTTTCATAAACCTAAT+TGG | 0.213187 | 8.1:+8538399 | None:intergenic |
| GAATGACGGTTCCATATTTC+AGG | 0.213906 | 8.1:+8538846 | None:intergenic |
| GATTCTCTCCGTTATCTTTA+CGG | 0.217974 | 8.1:-8538936 | MS.gene036481:CDS |
| AGTAGATCTAGGTTGAATTT+TGG | 0.239963 | 8.1:+8539176 | None:intergenic |
| GAGAATGAGGGAGAAAGTTT+TGG | 0.240822 | 8.1:-8538130 | MS.gene036481:CDS |
| AAGAAAATCACCCTGAAATA+TGG | 0.260817 | 8.1:-8538857 | MS.gene036481:CDS |
| GGTCGGTTCGGTACCAACTA+TGG | 0.275660 | 8.1:+8539066 | None:intergenic |
| TGGATAATGATCCTCATCTT+TGG | 0.279722 | 8.1:-8538767 | MS.gene036481:CDS |
| ACCAACTATGGGAACGGTTA+TGG | 0.308107 | 8.1:+8539078 | None:intergenic |
| GGATAATGATCCTCATCTTT+GGG | 0.312571 | 8.1:-8538766 | MS.gene036481:CDS |
| TGATTCCTGGAGTTGTTTAT+AGG | 0.323772 | 8.1:-8538104 | MS.gene036481:CDS |
| GCAGTATTCGTGGCATTTAC+CGG | 0.328562 | 8.1:-8538259 | MS.gene036481:CDS |
| CCAACTATGGGAACGGTTAT+GGG | 0.331615 | 8.1:+8539079 | None:intergenic |
| TAGGCTTCAAGAACTTGATT+TGG | 0.343749 | 8.1:-8537998 | MS.gene036481:CDS |
| GAAACTGTTGATTGTTCTAA+TGG | 0.345989 | 8.1:-8538438 | MS.gene036481:CDS |
| TGTTCACTGGAGTTATATTC+AGG | 0.365262 | 8.1:+8538912 | None:intergenic |
| AATGTGAATGGGAATTCATT+TGG | 0.374128 | 8.1:-8538477 | MS.gene036481:CDS |
| TTGGGATTTCTCTCAGCCTT+TGG | 0.379568 | 8.1:-8538787 | MS.gene036481:CDS |
| TTGTTATGGCCCGACCCGCT+TGG | 0.380292 | 8.1:-8538806 | MS.gene036481:CDS |
| TGAAATATGGAACCGTCATT+CGG | 0.384570 | 8.1:-8538844 | MS.gene036481:CDS |
| GAGGAGGAAGATAGTGATGA+TGG | 0.390746 | 8.1:+8539295 | None:intergenic |
| TACTTAGCAAACCACGGTTT+GGG | 0.399109 | 8.1:-8539110 | MS.gene036481:CDS |
| TGTTATGGCCCGACCCGCTT+GGG | 0.405707 | 8.1:-8538805 | MS.gene036481:CDS |
| TTTGTGAGCATGATCCAATT+AGG | 0.409212 | 8.1:-8538413 | MS.gene036481:CDS |
| AGAGAAATCCCAAGCGGGTC+GGG | 0.410850 | 8.1:+8538797 | None:intergenic |
| ATCTAGCGTTGTTGGATTCG+TGG | 0.415701 | 8.1:-8538626 | MS.gene036481:CDS |
| TAATGTAACCGCGTTAACTT+TGG | 0.420643 | 8.1:-8538712 | MS.gene036481:CDS |
| TTTAACAATCGACGGTACTT+TGG | 0.421402 | 8.1:-8538034 | MS.gene036481:CDS |
| TTTCTGCTACGCCAAATATC+CGG | 0.426952 | 8.1:-8538542 | MS.gene036481:CDS |
| TTACTTAGCAAACCACGGTT+TGG | 0.429313 | 8.1:-8539111 | MS.gene036481:CDS |
| GAAATATGGAACCGTCATTC+GGG | 0.432157 | 8.1:-8538843 | MS.gene036481:CDS |
| GGATGAAACGACGTTGGATA+AGG | 0.439139 | 8.1:+8538654 | None:intergenic |
| TCCACCGAATCTAGCGTTGT+TGG | 0.444512 | 8.1:-8538634 | MS.gene036481:CDS |
| TAGGTTTATGAAACCAATGT+TGG | 0.446642 | 8.1:-8538394 | MS.gene036481:CDS |
| CTTTGGATAAGATTCGATCT+AGG | 0.452162 | 8.1:-8538017 | MS.gene036481:CDS |
| TGGAATCTCGTGCTTGGCCG+TGG | 0.453321 | 8.1:-8538692 | MS.gene036481:CDS |
| AAGAGCAAGAGAAGATCTCT+TGG | 0.457230 | 8.1:+8538584 | None:intergenic |
| AGGAAGCATAATAGTTCTCC+TGG | 0.459426 | 8.1:-8538084 | MS.gene036481:CDS |
| CCCATAACCGTTCCCATAGT+TGG | 0.463878 | 8.1:-8539079 | MS.gene036481:CDS |
| TGCAAGAATCGCGTCAAAAG+TGG | 0.464262 | 8.1:+8538323 | None:intergenic |
| AACAATAGCAGTAATGTGAA+TGG | 0.464376 | 8.1:-8538489 | MS.gene036481:CDS |
| GAATCCAACAACGCTAGATT+CGG | 0.468029 | 8.1:+8538630 | None:intergenic |
| CTGCTAAATCGCAGTATTCG+TGG | 0.470634 | 8.1:-8538269 | MS.gene036481:CDS |
| TTGAAAACAACATCCTCCTT+AGG | 0.471381 | 8.1:+8538204 | None:intergenic |
| GAATCAAAGGCAGCGTAGTA+AGG | 0.474977 | 8.1:+8538954 | None:intergenic |
| GTTAGAATATCCATGCTTAA+CGG | 0.477590 | 8.1:-8539009 | MS.gene036481:CDS |
| AACAATTTGAGAGTAGATCT+AGG | 0.479430 | 8.1:+8539165 | None:intergenic |
| TCCTGGTTTGAGAAATAAGA+AGG | 0.481589 | 8.1:-8538067 | MS.gene036481:CDS |
| GAATACCTAGAGCTAGGGTT+AGG | 0.482401 | 8.1:-8538152 | MS.gene036481:CDS |
| TAACTTTGGAATCTCGTGCT+TGG | 0.483729 | 8.1:-8538698 | MS.gene036481:CDS |
| AAACTATCAAATTCAATCTC+CGG | 0.484033 | 8.1:+8538240 | None:intergenic |
| CAGAAATTTGCACCCAACAT+TGG | 0.489289 | 8.1:+8538381 | None:intergenic |
| AGGTTTATGAAACCAATGTT+GGG | 0.491816 | 8.1:-8538393 | MS.gene036481:CDS |
| ATGAACACCGTGTTGTTCAC+TGG | 0.496549 | 8.1:+8538899 | None:intergenic |
| GAAGATAGTGATGATGGAGA+TGG | 0.504939 | 8.1:+8539301 | None:intergenic |
| ACAATAGCAGTAATGTGAAT+GGG | 0.507436 | 8.1:-8538488 | MS.gene036481:CDS |
| GAGCTAGGGTTAGGAGAATG+AGG | 0.508653 | 8.1:-8538143 | MS.gene036481:CDS |
| TATCCGGCGGAGTATAAGAA+TGG | 0.511989 | 8.1:-8538526 | MS.gene036481:CDS |
| TCCTTCTTATTTCTCAAACC+AGG | 0.512916 | 8.1:+8538066 | None:intergenic |
| AAACCGTGGTTTGCTAAGTA+AGG | 0.519190 | 8.1:+8539113 | None:intergenic |
| CAAGCATGGATGGGTCGGTT+CGG | 0.522247 | 8.1:+8539054 | None:intergenic |
| TGCTTCCTATAAACAACTCC+AGG | 0.522766 | 8.1:+8538099 | None:intergenic |
| CGGATTTGGTTGGATTCAAG+AGG | 0.523835 | 8.1:+8539276 | None:intergenic |
| AAAATGAGTTCAAGCATGGA+TGG | 0.536172 | 8.1:+8539044 | None:intergenic |
| GCATTTGATTTAACAATCGA+CGG | 0.546377 | 8.1:-8538042 | MS.gene036481:CDS |
| ATTCAGGACCGTAAAGATAA+CGG | 0.546502 | 8.1:+8538928 | None:intergenic |
| AATGACGGTTCCATATTTCA+GGG | 0.548354 | 8.1:+8538847 | None:intergenic |
| AGCATGGATATTCTAACATA+CGG | 0.550288 | 8.1:+8539015 | None:intergenic |
| TGCAGAGAATACCTAGAGCT+AGG | 0.553397 | 8.1:-8538158 | MS.gene036481:CDS |
| TTCTGTTACTATACCTAAGG+AGG | 0.554561 | 8.1:-8538217 | MS.gene036481:CDS |
| ATTCCATTCTTATACTCCGC+CGG | 0.557044 | 8.1:+8538523 | None:intergenic |
| TTAGGATCTTCCGTTAAGCA+TGG | 0.563213 | 8.1:+8538999 | None:intergenic |
| GATAATGATCCTCATCTTTG+GGG | 0.563491 | 8.1:-8538765 | MS.gene036481:CDS |
| ATTCTCCTAACCCTAGCTCT+AGG | 0.569970 | 8.1:+8538147 | None:intergenic |
| AGTAAGGACATAAATCGTCT+AGG | 0.570315 | 8.1:+8539129 | None:intergenic |
| AGGAAGATAAACTGCGTTAG+CGG | 0.574038 | 8.1:+8538974 | None:intergenic |
| AATTTCTGTTTACAACCACC+AGG | 0.574716 | 8.1:-8538366 | MS.gene036481:CDS |
| AAGATAACGGAGAGAATCAA+AGG | 0.575689 | 8.1:+8538941 | None:intergenic |
| GTCGGTTCGGTACCAACTAT+GGG | 0.577292 | 8.1:+8539067 | None:intergenic |
| TCCAACAACGCTAGATTCGG+TGG | 0.582112 | 8.1:+8538633 | None:intergenic |
| GCAGAGAATACCTAGAGCTA+GGG | 0.583042 | 8.1:-8538157 | MS.gene036481:CDS |
| GAGTTCAAGCATGGATGGGT+CGG | 0.586601 | 8.1:+8539049 | None:intergenic |
| AAAATGAGTGCGAACAACGT+TGG | 0.589102 | 8.1:-8539220 | MS.gene036481:CDS |
| GAGAGAAATCCCAAGCGGGT+CGG | 0.590735 | 8.1:+8538796 | None:intergenic |
| GGCTGAGAGAAATCCCAAGC+GGG | 0.599255 | 8.1:+8538792 | None:intergenic |
| ATGGAAAATGAGTTCAAGCA+TGG | 0.601996 | 8.1:+8539040 | None:intergenic |
| TCAAAAGTGGATTTACGCGT+AGG | 0.603942 | 8.1:+8538336 | None:intergenic |
| AACGAAGTTCCCCAAAGATG+AGG | 0.606107 | 8.1:+8538756 | None:intergenic |
| ATTTGGTTGGATTCAAGAGG+AGG | 0.608161 | 8.1:+8539279 | None:intergenic |
| AAATGAGTTCAAGCATGGAT+GGG | 0.612671 | 8.1:+8539045 | None:intergenic |
| AATGATCATGACCCGAATGA+CGG | 0.613212 | 8.1:+8538832 | None:intergenic |
| AGCTAGGGTTAGGAGAATGA+GGG | 0.619880 | 8.1:-8538142 | MS.gene036481:CDS |
| TTCGGTGGATGAAACGACGT+TGG | 0.620909 | 8.1:+8538648 | None:intergenic |
| TTCGGTACCAACTATGGGAA+CGG | 0.621276 | 8.1:+8539072 | None:intergenic |
| GGAACAGCATGTTCTTGCCA+CGG | 0.628694 | 8.1:+8538675 | None:intergenic |
| GATATTCTAACATACGGCGA+TGG | 0.630625 | 8.1:+8539021 | None:intergenic |
| CGCGTAGGAGTATCCCCTGG+TGG | 0.639296 | 8.1:+8538351 | None:intergenic |
| AGATGAGGATCATTATCCAA+AGG | 0.639572 | 8.1:+8538771 | None:intergenic |
| TTTCTGTTTACAACCACCAG+GGG | 0.640332 | 8.1:-8538364 | MS.gene036481:CDS |
| TGTCCTTACTTAGCAAACCA+CGG | 0.646035 | 8.1:-8539116 | MS.gene036481:CDS |
| CTGCTACGCCAAATATCCGG+CGG | 0.662754 | 8.1:-8538539 | MS.gene036481:CDS |
| TTACGCGTAGGAGTATCCCC+TGG | 0.680611 | 8.1:+8538348 | None:intergenic |
| ATTTCTGTTTACAACCACCA+GGG | 0.682776 | 8.1:-8538365 | MS.gene036481:CDS |
| GAGATGGAGATGTAGATGTG+TGG | 0.694825 | 8.1:+8539317 | None:intergenic |
| ACGAGATTCCAAAGTTAACG+CGG | 0.729351 | 8.1:+8538704 | None:intergenic |
| TATAACTCCAGTGAACAACA+CGG | 0.729772 | 8.1:-8538906 | MS.gene036481:CDS |
| AGGCTGAGAGAAATCCCAAG+CGG | 0.735314 | 8.1:+8538791 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAGTTTTCATTTTCTT+CGG | + | chr8.1:8538069-8538088 | None:intergenic | 15.0% |
| ! | AAACTATCAAATTCAATCTC+CGG | + | chr8.1:8539085-8539104 | None:intergenic | 25.0% |
| !! | ATTGGTTTCATAAACCTAAT+TGG | + | chr8.1:8538926-8538945 | None:intergenic | 25.0% |
| !! | TCATGATCATTTTCTTGTTA+TGG | - | chr8.1:8538502-8538521 | MS.gene036481:CDS | 25.0% |
| !! | TTTTTCTGTTACTATACCTA+AGG | - | chr8.1:8539102-8539121 | MS.gene036481:CDS | 25.0% |
| AACAATAGCAGTAATGTGAA+TGG | - | chr8.1:8538833-8538852 | MS.gene036481:CDS | 30.0% | |
| AACAATTTGAGAGTAGATCT+AGG | + | chr8.1:8538160-8538179 | None:intergenic | 30.0% | |
| AAGAAAATCACCCTGAAATA+TGG | - | chr8.1:8538465-8538484 | MS.gene036481:CDS | 30.0% | |
| AATGTGAATGGGAATTCATT+TGG | - | chr8.1:8538845-8538864 | MS.gene036481:CDS | 30.0% | |
| ACAATAGCAGTAATGTGAAT+GGG | - | chr8.1:8538834-8538853 | MS.gene036481:CDS | 30.0% | |
| AGCATGGATATTCTAACATA+CGG | + | chr8.1:8538310-8538329 | None:intergenic | 30.0% | |
| AGGTTTATGAAACCAATGTT+GGG | - | chr8.1:8538929-8538948 | MS.gene036481:CDS | 30.0% | |
| GTTAGAATATCCATGCTTAA+CGG | - | chr8.1:8538313-8538332 | MS.gene036481:CDS | 30.0% | |
| TAGGTTTATGAAACCAATGT+TGG | - | chr8.1:8538928-8538947 | MS.gene036481:CDS | 30.0% | |
| ! | GAAACTGTTGATTGTTCTAA+TGG | - | chr8.1:8538884-8538903 | MS.gene036481:CDS | 30.0% |
| ! | GCATTTGATTTAACAATCGA+CGG | - | chr8.1:8539280-8539299 | MS.gene036481:CDS | 30.0% |
| ! | GTTTTCATTTTCTTCGGATT+TGG | + | chr8.1:8538063-8538082 | None:intergenic | 30.0% |
| ! | TATTTCAGGGTGATTTTCTT+TGG | + | chr8.1:8538465-8538484 | None:intergenic | 30.0% |
| !! | AGTAGATCTAGGTTGAATTT+TGG | + | chr8.1:8538149-8538168 | None:intergenic | 30.0% |
| AAAATGAGTTCAAGCATGGA+TGG | + | chr8.1:8538281-8538300 | None:intergenic | 35.0% | |
| AAATGAGTTCAAGCATGGAT+GGG | + | chr8.1:8538280-8538299 | None:intergenic | 35.0% | |
| AATGACGGTTCCATATTTCA+GGG | + | chr8.1:8538478-8538497 | None:intergenic | 35.0% | |
| AATTTCTGTTTACAACCACC+AGG | - | chr8.1:8538956-8538975 | MS.gene036481:CDS | 35.0% | |
| AGATGAGGATCATTATCCAA+AGG | + | chr8.1:8538554-8538573 | None:intergenic | 35.0% | |
| AGTAAGGACATAAATCGTCT+AGG | + | chr8.1:8538196-8538215 | None:intergenic | 35.0% | |
| ATGGAAAATGAGTTCAAGCA+TGG | + | chr8.1:8538285-8538304 | None:intergenic | 35.0% | |
| ATTCAGGACCGTAAAGATAA+CGG | + | chr8.1:8538397-8538416 | None:intergenic | 35.0% | |
| ATTTCTGTTTACAACCACCA+GGG | - | chr8.1:8538957-8538976 | MS.gene036481:CDS | 35.0% | |
| CTTTGGATAAGATTCGATCT+AGG | - | chr8.1:8539305-8539324 | MS.gene036481:CDS | 35.0% | |
| GATAAATCCTCGAAAAACAC+AGG | + | chr8.1:8539034-8539053 | None:intergenic | 35.0% | |
| GATAATGATCCTCATCTTTG+GGG | - | chr8.1:8538557-8538576 | MS.gene036481:CDS | 35.0% | |
| GATTCTCTCCGTTATCTTTA+CGG | - | chr8.1:8538386-8538405 | MS.gene036481:CDS | 35.0% | |
| GCGGTTACATTAAAAAACTG+TGG | + | chr8.1:8538602-8538621 | None:intergenic | 35.0% | |
| GGATAATGATCCTCATCTTT+GGG | - | chr8.1:8538556-8538575 | MS.gene036481:CDS | 35.0% | |
| TAATGTAACCGCGTTAACTT+TGG | - | chr8.1:8538610-8538629 | MS.gene036481:CDS | 35.0% | |
| TAGGCTTCAAGAACTTGATT+TGG | - | chr8.1:8539324-8539343 | MS.gene036481:CDS | 35.0% | |
| TATAACTCCAGTGAACAACA+CGG | - | chr8.1:8538416-8538435 | MS.gene036481:CDS | 35.0% | |
| TGAAATATGGAACCGTCATT+CGG | - | chr8.1:8538478-8538497 | MS.gene036481:CDS | 35.0% | |
| TGATTCCTGGAGTTGTTTAT+AGG | - | chr8.1:8539218-8539237 | MS.gene036481:CDS | 35.0% | |
| TGGATAATGATCCTCATCTT+TGG | - | chr8.1:8538555-8538574 | MS.gene036481:CDS | 35.0% | |
| TGTTCACTGGAGTTATATTC+AGG | + | chr8.1:8538413-8538432 | None:intergenic | 35.0% | |
| TTCTGTTACTATACCTAAGG+AGG | - | chr8.1:8539105-8539124 | MS.gene036481:CDS | 35.0% | |
| TTGAAAACAACATCCTCCTT+AGG | + | chr8.1:8539121-8539140 | None:intergenic | 35.0% | |
| TTTAACAATCGACGGTACTT+TGG | - | chr8.1:8539288-8539307 | MS.gene036481:CDS | 35.0% | |
| TTTGTGAGCATGATCCAATT+AGG | - | chr8.1:8538909-8538928 | MS.gene036481:CDS | 35.0% | |
| ! | TCCTGGTTTGAGAAATAAGA+AGG | - | chr8.1:8539255-8539274 | MS.gene036481:CDS | 35.0% |
| ! | TCCTTCTTATTTCTCAAACC+AGG | + | chr8.1:8539259-8539278 | None:intergenic | 35.0% |
| ! | TTGTATACCTGTGTTTTTCG+AGG | - | chr8.1:8539024-8539043 | MS.gene036481:CDS | 35.0% |
| !! | AAGATAACGGAGAGAATCAA+AGG | + | chr8.1:8538384-8538403 | None:intergenic | 35.0% |
| !! | AGATCTAGGTTGAATTTTGG+TGG | + | chr8.1:8538146-8538165 | None:intergenic | 35.0% |
| !! | TCATTTTCTTCGGATTTGGT+TGG | + | chr8.1:8538059-8538078 | None:intergenic | 35.0% |
| !! | TTGGTGGTAGTTTTCTTATG+TGG | + | chr8.1:8538130-8538149 | None:intergenic | 35.0% |
| !!! | AAAGTTTTGGAGTTGATTCC+TGG | - | chr8.1:8539205-8539224 | MS.gene036481:CDS | 35.0% |
| !!! | AAGGAGGATGTTGTTTTCAA+GGG | - | chr8.1:8539121-8539140 | MS.gene036481:CDS | 35.0% |
| !!! | ATGTAGATGTGTGGTTTTGA+TGG | + | chr8.1:8537999-8538018 | None:intergenic | 35.0% |
| !!! | TAAGGAGGATGTTGTTTTCA+AGG | - | chr8.1:8539120-8539139 | MS.gene036481:CDS | 35.0% |
| AAAATGAGTGCGAACAACGT+TGG | - | chr8.1:8538102-8538121 | MS.gene036481:CDS | 40.0% | |
| AAGAGCAAGAGAAGATCTCT+TGG | + | chr8.1:8538741-8538760 | None:intergenic | 40.0% | |
| AATGATCATGACCCGAATGA+CGG | + | chr8.1:8538493-8538512 | None:intergenic | 40.0% | |
| ACGAGATTCCAAAGTTAACG+CGG | + | chr8.1:8538621-8538640 | None:intergenic | 40.0% | |
| AGGAAGATAAACTGCGTTAG+CGG | + | chr8.1:8538351-8538370 | None:intergenic | 40.0% | |
| ATTCCATTCTTATACTCCGC+CGG | + | chr8.1:8538802-8538821 | None:intergenic | 40.0% | |
| ATTTGGTTGGATTCAAGAGG+AGG | + | chr8.1:8538046-8538065 | None:intergenic | 40.0% | |
| CAGAAATTTGCACCCAACAT+TGG | + | chr8.1:8538944-8538963 | None:intergenic | 40.0% | |
| GAAATATGGAACCGTCATTC+GGG | - | chr8.1:8538479-8538498 | MS.gene036481:CDS | 40.0% | |
| GAATCCAACAACGCTAGATT+CGG | + | chr8.1:8538695-8538714 | None:intergenic | 40.0% | |
| GAATGACGGTTCCATATTTC+AGG | + | chr8.1:8538479-8538498 | None:intergenic | 40.0% | |
| GATATTCTAACATACGGCGA+TGG | + | chr8.1:8538304-8538323 | None:intergenic | 40.0% | |
| TACTTAGCAAACCACGGTTT+GGG | - | chr8.1:8538212-8538231 | MS.gene036481:CDS | 40.0% | |
| TGCTTCCTATAAACAACTCC+AGG | + | chr8.1:8539226-8539245 | None:intergenic | 40.0% | |
| TGTCCTTACTTAGCAAACCA+CGG | - | chr8.1:8538206-8538225 | MS.gene036481:CDS | 40.0% | |
| TTACTTAGCAAACCACGGTT+TGG | - | chr8.1:8538211-8538230 | MS.gene036481:CDS | 40.0% | |
| TTAGGATCTTCCGTTAAGCA+TGG | + | chr8.1:8538326-8538345 | None:intergenic | 40.0% | |
| TTTCTGCTACGCCAAATATC+CGG | - | chr8.1:8538780-8538799 | MS.gene036481:CDS | 40.0% | |
| TTTCTGTTTACAACCACCAG+GGG | - | chr8.1:8538958-8538977 | MS.gene036481:CDS | 40.0% | |
| ! | AGGAAGCATAATAGTTCTCC+TGG | - | chr8.1:8539238-8539257 | MS.gene036481:CDS | 40.0% |
| ! | GAGAATGAGGGAGAAAGTTT+TGG | - | chr8.1:8539192-8539211 | MS.gene036481:CDS | 40.0% |
| ! | TAAACTGCGTTAGCGGTTTT+AGG | + | chr8.1:8538344-8538363 | None:intergenic | 40.0% |
| ! | TCAAAAGTGGATTTACGCGT+AGG | + | chr8.1:8538989-8539008 | None:intergenic | 40.0% |
| ! | TCTTCTCTTGCTCTTTTTGC+AGG | - | chr8.1:8538746-8538765 | MS.gene036481:CDS | 40.0% |
| !! | AAACCGTGGTTTGCTAAGTA+AGG | + | chr8.1:8538212-8538231 | None:intergenic | 40.0% |
| !! | GAAGATAGTGATGATGGAGA+TGG | + | chr8.1:8538024-8538043 | None:intergenic | 40.0% |
| !! | TAACTTTGGAATCTCGTGCT+TGG | - | chr8.1:8538624-8538643 | MS.gene036481:CDS | 40.0% |
| AACGAAGTTCCCCAAAGATG+AGG | + | chr8.1:8538569-8538588 | None:intergenic | 45.0% | |
| ACCAACTATGGGAACGGTTA+TGG | + | chr8.1:8538247-8538266 | None:intergenic | 45.0% | |
| AGCTAGGGTTAGGAGAATGA+GGG | - | chr8.1:8539180-8539199 | MS.gene036481:CDS | 45.0% | |
| ATCTAGCGTTGTTGGATTCG+TGG | - | chr8.1:8538696-8538715 | MS.gene036481:CDS | 45.0% | |
| CCAACTATGGGAACGGTTAT+GGG | + | chr8.1:8538246-8538265 | None:intergenic | 45.0% | |
| CTGCTAAATCGCAGTATTCG+TGG | - | chr8.1:8539053-8539072 | MS.gene036481:CDS | 45.0% | |
| CTTATACTCCGCCGGATATT+TGG | + | chr8.1:8538794-8538813 | None:intergenic | 45.0% | |
| GAATACCTAGAGCTAGGGTT+AGG | - | chr8.1:8539170-8539189 | MS.gene036481:CDS | 45.0% | |
| GAATCAAAGGCAGCGTAGTA+AGG | + | chr8.1:8538371-8538390 | None:intergenic | 45.0% | |
| GAGATGGAGATGTAGATGTG+TGG | + | chr8.1:8538008-8538027 | None:intergenic | 45.0% | |
| GAGGAGGAAGATAGTGATGA+TGG | + | chr8.1:8538030-8538049 | None:intergenic | 45.0% | |
| GCAGAGAATACCTAGAGCTA+GGG | - | chr8.1:8539165-8539184 | MS.gene036481:CDS | 45.0% | |
| GCAGTATTCGTGGCATTTAC+CGG | - | chr8.1:8539063-8539082 | MS.gene036481:CDS | 45.0% | |
| GGATGAAACGACGTTGGATA+AGG | + | chr8.1:8538671-8538690 | None:intergenic | 45.0% | |
| TATCCGGCGGAGTATAAGAA+TGG | - | chr8.1:8538796-8538815 | MS.gene036481:CDS | 45.0% | |
| TGCAAGAATCGCGTCAAAAG+TGG | + | chr8.1:8539002-8539021 | None:intergenic | 45.0% | |
| TGCAGAGAATACCTAGAGCT+AGG | - | chr8.1:8539164-8539183 | MS.gene036481:CDS | 45.0% | |
| TTCGGTACCAACTATGGGAA+CGG | + | chr8.1:8538253-8538272 | None:intergenic | 45.0% | |
| TTGGGATTTCTCTCAGCCTT+TGG | - | chr8.1:8538535-8538554 | MS.gene036481:CDS | 45.0% | |
| ! | ACTTTTGACGCGATTCTTGC+AGG | - | chr8.1:8539001-8539020 | MS.gene036481:CDS | 45.0% |
| ! | ATGAACACCGTGTTGTTCAC+TGG | + | chr8.1:8538426-8538445 | None:intergenic | 45.0% |
| ! | ATTCTCCTAACCCTAGCTCT+AGG | + | chr8.1:8539178-8539197 | None:intergenic | 45.0% |
| ! | CGGATTTGGTTGGATTCAAG+AGG | + | chr8.1:8538049-8538068 | None:intergenic | 45.0% |
| ! | TCTCTTGCTCTTTTTGCAGG+TGG | - | chr8.1:8538749-8538768 | MS.gene036481:CDS | 45.0% |
| AGGCTGAGAGAAATCCCAAG+CGG | + | chr8.1:8538534-8538553 | None:intergenic | 50.0% | |
| CCCATAACCGTTCCCATAGT+TGG | - | chr8.1:8538243-8538262 | MS.gene036481:CDS | 50.0% | |
| GAGCTAGGGTTAGGAGAATG+AGG | - | chr8.1:8539179-8539198 | MS.gene036481:CDS | 50.0% | |
| GAGTTCAAGCATGGATGGGT+CGG | + | chr8.1:8538276-8538295 | None:intergenic | 50.0% | |
| GGAACAGCATGTTCTTGCCA+CGG | + | chr8.1:8538650-8538669 | None:intergenic | 50.0% | |
| TCCAACAACGCTAGATTCGG+TGG | + | chr8.1:8538692-8538711 | None:intergenic | 50.0% | |
| TCCACCGAATCTAGCGTTGT+TGG | - | chr8.1:8538688-8538707 | MS.gene036481:CDS | 50.0% | |
| TTCGGTGGATGAAACGACGT+TGG | + | chr8.1:8538677-8538696 | None:intergenic | 50.0% | |
| ! | CTTGCTCTTTTTGCAGGTGG+TGG | - | chr8.1:8538752-8538771 | MS.gene036481:CDS | 50.0% |
| !! | GTCGGTTCGGTACCAACTAT+GGG | + | chr8.1:8538258-8538277 | None:intergenic | 50.0% |
| !!! | GGGTTTTTTGACCCAAACCG+TGG | + | chr8.1:8538226-8538245 | None:intergenic | 50.0% |
| AGAGAAATCCCAAGCGGGTC+GGG | + | chr8.1:8538528-8538547 | None:intergenic | 55.0% | |
| CAAGCATGGATGGGTCGGTT+CGG | + | chr8.1:8538271-8538290 | None:intergenic | 55.0% | |
| CTGCTACGCCAAATATCCGG+CGG | - | chr8.1:8538783-8538802 | MS.gene036481:CDS | 55.0% | |
| GAGAGAAATCCCAAGCGGGT+CGG | + | chr8.1:8538529-8538548 | None:intergenic | 55.0% | |
| GGCTGAGAGAAATCCCAAGC+GGG | + | chr8.1:8538533-8538552 | None:intergenic | 55.0% | |
| !! | GCTCTTTTTGCAGGTGGTGG+TGG | - | chr8.1:8538755-8538774 | MS.gene036481:CDS | 55.0% |
| !! | GGTCGGTTCGGTACCAACTA+TGG | + | chr8.1:8538259-8538278 | None:intergenic | 55.0% |
| !! | TTACGCGTAGGAGTATCCCC+TGG | + | chr8.1:8538977-8538996 | None:intergenic | 55.0% |
| TGGAATCTCGTGCTTGGCCG+TGG | - | chr8.1:8538630-8538649 | MS.gene036481:CDS | 60.0% | |
| TGTTATGGCCCGACCCGCTT+GGG | - | chr8.1:8538517-8538536 | MS.gene036481:CDS | 60.0% | |
| TTGTTATGGCCCGACCCGCT+TGG | - | chr8.1:8538516-8538535 | MS.gene036481:CDS | 60.0% | |
| !! | CGCGTAGGAGTATCCCCTGG+TGG | + | chr8.1:8538974-8538993 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 8537990 | 8539354 | 8537990 | ID=MS.gene036481 |
| chr8.1 | mRNA | 8537990 | 8539354 | 8537990 | ID=MS.gene036481.t1;Parent=MS.gene036481 |
| chr8.1 | exon | 8537990 | 8539354 | 8537990 | ID=MS.gene036481.t1.exon1;Parent=MS.gene036481.t1 |
| chr8.1 | CDS | 8537990 | 8539354 | 8537990 | ID=cds.MS.gene036481.t1;Parent=MS.gene036481.t1 |
| Gene Sequence |
| Protein sequence |
