AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026794


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026794.t1 MTR_4g011320 97.163 282 6 1 1 282 1 280 0.0 562
MS.gene026794.t1 MTR_2g103140 82.692 260 42 2 1 260 1 257 1.84e-145 408
MS.gene026794.t1 MTR_2g054780 65.432 243 84 0 15 257 10 252 5.60e-118 339
MS.gene026794.t1 MTR_3g107630 67.373 236 77 0 22 257 19 254 6.55e-116 333
MS.gene026794.t1 MTR_2g054780 63.374 243 82 1 15 257 10 245 3.27e-111 321
MS.gene026794.t1 MTR_4g132890 30.088 226 131 8 37 253 4 211 6.99e-20 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026794.t1 AT1G52700 73.684 247 63 1 11 257 9 253 4.37e-130 369
MS.gene026794.t1 AT1G52700 73.684 247 63 1 11 257 9 253 4.37e-130 369
MS.gene026794.t1 AT1G52700 73.469 245 63 1 13 257 2 244 9.78e-129 366
MS.gene026794.t1 AT3G15650 66.304 276 70 2 1 257 1 272 1.10e-125 359
MS.gene026794.t1 AT3G15650 71.206 257 70 1 1 257 1 253 5.25e-122 349
MS.gene026794.t1 AT3G15650 69.582 263 74 1 1 257 1 263 9.41e-121 346
MS.gene026794.t1 AT5G20060 63.855 249 89 1 9 257 5 252 1.48e-119 343
MS.gene026794.t1 AT5G20060 63.855 249 89 1 9 257 5 252 1.48e-119 343
MS.gene026794.t1 AT5G20060 63.855 249 89 1 9 257 5 252 1.48e-119 343
MS.gene026794.t1 AT5G20060 63.855 249 89 1 9 257 5 252 1.48e-119 343
MS.gene026794.t1 AT1G52700 73.134 201 54 0 57 257 1 201 5.96e-105 304
MS.gene026794.t1 AT1G52700 75.661 189 44 1 11 199 9 195 1.94e-100 292
MS.gene026794.t1 AT1G52700 75.661 189 44 1 11 199 9 195 1.94e-100 292
MS.gene026794.t1 AT1G51300 39.544 263 142 3 6 257 8 264 4.00e-58 187
MS.gene026794.t1 AT1G51300 41.204 216 119 2 16 229 27 236 3.54e-53 174
MS.gene026794.t1 AT1G52695 43.333 210 112 2 14 222 3 206 4.68e-53 173
MS.gene026794.t1 AT1G51300 42.675 157 82 2 16 170 16 166 4.38e-40 138
MS.gene026794.t1 AT1G47786 46.296 162 75 4 16 173 33 186 4.01e-37 130
MS.gene026794.t1 AT1G52470 37.383 214 116 5 22 235 13 208 4.36e-37 132
MS.gene026794.t1 AT1G52460 38.528 231 115 7 29 255 13 220 1.75e-36 130
MS.gene026794.t1 AT1G52470 39.326 178 90 5 22 199 13 172 1.54e-32 118
MS.gene026794.t1 AT1G52470 39.326 178 90 5 22 199 13 172 1.60e-32 118
MS.gene026794.t1 AT1G52440 34.135 208 84 4 29 234 17 173 9.07e-27 103
MS.gene026794.t1 AT1G47780 52.727 110 49 1 64 173 23 129 8.38e-26 99.4
MS.gene026794.t1 AT4G22300 31.050 219 124 7 40 249 51 251 5.89e-22 92.8
MS.gene026794.t1 AT4G22305 31.507 219 123 8 40 249 6 206 6.26e-21 89.4

Find 80 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCTCATGCCTGGGGCTT+GGG 0.096496 4.1:+84899524 MS.gene026794:CDS
TGGCTCATGCCTGGGGCTTG+GGG 0.138001 4.1:+84899525 MS.gene026794:CDS
CTTGGCTCATGCCTGGGGCT+TGG 0.151372 4.1:+84899523 MS.gene026794:CDS
CAATTGGCTTGGCTCATGCC+TGG 0.224859 4.1:+84899516 MS.gene026794:CDS
CTCAACTTAAGAGCAGTTAT+TGG 0.234690 4.1:+84898490 MS.gene026794:CDS
AGAAGAACTAATTTGGAGTT+TGG 0.266947 4.1:+84896744 MS.gene026794:CDS
GTTATATGATGCAGATAAAA+TGG 0.282666 4.1:+84897861 MS.gene026794:intron
GGACTAAGTGGCTGGCTTCC+AGG 0.288410 4.1:+84898511 MS.gene026794:CDS
CTGCATGGTCTTGGTGATAA+TGG 0.289266 4.1:+84896819 MS.gene026794:CDS
TATCAAATGGGGTCTGGTTC+TGG 0.310234 4.1:+84896406 MS.gene026794:CDS
AATTGGCTTGGCTCATGCCT+GGG 0.311627 4.1:+84899517 MS.gene026794:CDS
ACAATAATCAGGGTTTGATA+TGG 0.314213 4.1:+84898061 MS.gene026794:intron
AACTGCTAGAAGAACTAATT+TGG 0.328772 4.1:+84896737 MS.gene026794:CDS
GAACCATGCATGTTATCAAA+TGG 0.366787 4.1:+84896393 MS.gene026794:CDS
TGGGATTGGAGGCTTCAGTA+TGG 0.372915 4.1:+84898396 MS.gene026794:CDS
GATGTAGTCCTCTACAAATA+TGG 0.381501 4.1:+84899059 MS.gene026794:CDS
CAGGCATGAGCCAAGCCAAT+TGG 0.382122 4.1:-84899515 None:intergenic
CAGATGATGGTCCAGATGAT+TGG 0.393245 4.1:+84898093 MS.gene026794:CDS
AACCATGCATGTTATCAAAT+GGG 0.399917 4.1:+84896394 MS.gene026794:CDS
TATTGTGGTATAGTGAAAGT+TGG 0.404396 4.1:+84898376 MS.gene026794:intron
GGCTCATGCCTGGGGCTTGG+GGG 0.436395 4.1:+84899526 MS.gene026794:CDS
GCTCAAACCTTGTGTTCAGC+AGG 0.437434 4.1:+84899092 MS.gene026794:CDS
ATTGTGGTATAGTGAAAGTT+GGG 0.439268 4.1:+84898377 MS.gene026794:intron
CAATAATCAGGGTTTGATAT+GGG 0.441882 4.1:+84898062 MS.gene026794:intron
ACTTGATGCCATATTATTTG+AGG 0.443726 4.1:-84899551 None:intergenic
CTTGATGCCATATTATTTGA+GGG 0.445143 4.1:-84899550 None:intergenic
ATAGTCTGGCTGCATGGTCT+TGG 0.451510 4.1:+84896810 MS.gene026794:CDS
TCTAAACCCTCCCAATCATC+TGG 0.452958 4.1:-84898104 None:intergenic
ACAGGTCGGGTAGGAGCAGT+TGG 0.454599 4.1:-84897890 None:intergenic
TATAACATTCAAATCCTATG+AGG 0.464278 4.1:+84899124 MS.gene026794:CDS
AGATGATGGTCCAGATGATT+GGG 0.466419 4.1:+84898094 MS.gene026794:CDS
AACATCAAGCAACTATAGTC+TGG 0.471029 4.1:+84896796 MS.gene026794:CDS
GCCATGGGAAGGTATGGAAA+TGG 0.473050 4.1:+84898454 MS.gene026794:CDS
TGCTCTTAAGTTGAGACTGC+AGG 0.479567 4.1:-84898482 None:intergenic
GGGATTGGAGGCTTCAGTAT+GGG 0.484847 4.1:+84898397 MS.gene026794:CDS
ATTGTTGTATACCTTGATCC+TGG 0.487269 4.1:-84898529 None:intergenic
TTGGAAGTGGAAGTGATTCA+AGG 0.493512 4.1:-84897609 None:intergenic
GCATGTTATCAAATGGGGTC+TGG 0.494637 4.1:+84896400 MS.gene026794:CDS
GCTGAAGTCTCCAATTGGCT+TGG 0.496475 4.1:+84899505 MS.gene026794:CDS
ATAGTGAAAGTTGGGATTGG+AGG 0.499249 4.1:+84898385 MS.gene026794:intron
TACAAACTTACATTTGGAAG+TGG 0.499274 4.1:-84897622 None:intergenic
ATTGGCTTGGCTCATGCCTG+GGG 0.502183 4.1:+84899518 MS.gene026794:CDS
AGATGGCTGAAGTCTCCAAT+TGG 0.504814 4.1:+84899500 MS.gene026794:CDS
GGTATAGTGAAAGTTGGGAT+TGG 0.506683 4.1:+84898382 MS.gene026794:intron
GCCTTGAAAGTACCATCAGC+TGG 0.508974 4.1:-84898167 None:intergenic
CAGTTATTGGACTAAGTGGC+TGG 0.511811 4.1:+84898503 MS.gene026794:CDS
ACCCGACCTGTAGCTATACT+TGG 0.523563 4.1:+84897902 MS.gene026794:CDS
GAGACTTCAGCCATCTCTCT+AGG 0.530300 4.1:-84899493 None:intergenic
ACACATGTAGTGAGACCTAA+AGG 0.532303 4.1:+84896771 MS.gene026794:CDS
ACCAAGTATAGCTACAGGTC+GGG 0.532936 4.1:-84897903 None:intergenic
GAAAGTACCATCAGCTGGCT+CGG 0.534696 4.1:-84898162 None:intergenic
CTCAAACCTTGTGTTCAGCA+GGG 0.534728 4.1:+84899093 MS.gene026794:CDS
GTGGCTGGCTTCCAGGATCA+AGG 0.539805 4.1:+84898518 MS.gene026794:CDS
AGAGCAGTTATTGGACTAAG+TGG 0.552676 4.1:+84898499 MS.gene026794:CDS
GTCTTGGTGATAATGGTTTG+AGG 0.560801 4.1:+84896826 MS.gene026794:CDS
ATAACATTCAAATCCTATGA+GGG 0.562724 4.1:+84899125 MS.gene026794:CDS
AAGCCACCAAGTATAGCTAC+AGG 0.562898 4.1:-84897908 None:intergenic
CAGGTCGGGTAGGAGCAGTT+GGG 0.563753 4.1:-84897889 None:intergenic
GCTCTTAAGTTGAGACTGCA+GGG 0.570121 4.1:-84898481 None:intergenic
CGACCTGTAGCTATACTTGG+TGG 0.573380 4.1:+84897905 MS.gene026794:CDS
GCCATTTCCATACCTTCCCA+TGG 0.577058 4.1:-84898455 None:intergenic
ATGGGAGAACTATCAGATGA+TGG 0.578285 4.1:+84898080 MS.gene026794:CDS
TTGAAACCCTGCTGAACACA+AGG 0.578854 4.1:-84899099 None:intergenic
GCAACTATAGTCTGGCTGCA+TGG 0.583738 4.1:+84896804 MS.gene026794:CDS
TTGTCAACCGAGCCAGCTGA+TGG 0.587122 4.1:+84898155 MS.gene026794:CDS
ACCCCATTTGATAACATGCA+TGG 0.589572 4.1:-84896396 None:intergenic
ACTTCTCTCCATATTTGTAG+AGG 0.592373 4.1:-84899067 None:intergenic
AATTGTCACATGAAGCAAGA+AGG 0.595405 4.1:+84898720 MS.gene026794:CDS
TTATACAGTTCCTAGAGAGA+TGG 0.595540 4.1:+84899483 MS.gene026794:CDS
ATAGTGACATACTAATTCCA+TGG 0.603581 4.1:-84898772 None:intergenic
ATTTGCAATATGTTCTGCTG+AGG 0.608568 4.1:-84898129 None:intergenic
CACCAAGTATAGCTACAGGT+CGG 0.615230 4.1:-84897904 None:intergenic
TTAAGTTGAGACTGCAGGGG+AGG 0.616117 4.1:-84898477 None:intergenic
AGTATAGCTACAGGTCGGGT+AGG 0.625069 4.1:-84897899 None:intergenic
TGATGGTCCAGATGATTGGG+AGG 0.628482 4.1:+84898097 MS.gene026794:CDS
ACCATGCATGTTATCAAATG+GGG 0.644999 4.1:+84896395 MS.gene026794:CDS
GATGGTCCAGATGATTGGGA+GGG 0.653067 4.1:+84898098 MS.gene026794:CDS
GTCATGTTGTAGAAGACATG+CGG 0.655778 4.1:+84899572 MS.gene026794:CDS
TAACATTCAAATCCTATGAG+GGG 0.669236 4.1:+84899126 MS.gene026794:CDS
CTCTTAAGTTGAGACTGCAG+GGG 0.679564 4.1:-84898480 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATAATTTTTTTAAAAAA+AGG - chr4.1:84899156-84899175 None:intergenic 0.0%
!! AAAAATCAAATAAAAAATAG+AGG - chr4.1:84897068-84897087 None:intergenic 10.0%
!! AAAATCAAATAAAAAATAGA+GGG - chr4.1:84897067-84897086 None:intergenic 10.0%
!!! AAAAGTTGTTATTTTTTTAT+AGG + chr4.1:84897254-84897273 MS.gene026794:intron 10.0%
!!! AAATCTTTATATTTTTTATG+AGG - chr4.1:84898213-84898232 None:intergenic 10.0%
!!! AATCTTTATATTTTTTATGA+GGG - chr4.1:84898212-84898231 None:intergenic 10.0%
!!! ATTTGGTTTTTTATTTAATT+AGG + chr4.1:84898812-84898831 MS.gene026794:intron 10.0%
!! AAAAAAAGTAGTAGTTAATT+TGG - chr4.1:84897167-84897186 None:intergenic 15.0%
!! CATAATAAAAAATTTAAGCT+TGG + chr4.1:84897563-84897582 MS.gene026794:intron 15.0%
!! GTATACAACAATATTATTTA+GGG + chr4.1:84898540-84898559 MS.gene026794:intron 15.0%
!! TTGTTAAATAGCAAAATATA+AGG - chr4.1:84898045-84898064 None:intergenic 15.0%
!!! TAAAAATGAATTTTCAAGAA+AGG - chr4.1:84896467-84896486 None:intergenic 15.0%
!!! TTTTTATTTAATTAGGATGT+TGG + chr4.1:84898819-84898838 MS.gene026794:intron 15.0%
!! AAAATCTTATAGAAAACTAG+AGG - chr4.1:84897961-84897980 None:intergenic 20.0%
!! AAATCTTATAGAAAACTAGA+GGG - chr4.1:84897960-84897979 None:intergenic 20.0%
!! AGATAGTAAATTATATCACA+AGG + chr4.1:84897139-84897158 MS.gene026794:intron 20.0%
!! AGTACACATTATTAAATCTT+TGG + chr4.1:84898608-84898627 MS.gene026794:intron 20.0%
!! ATAAGAAAATAAGATAGACA+AGG - chr4.1:84897017-84897036 None:intergenic 20.0%
!! ATCTAATTGTATTGAAAAGA+TGG - chr4.1:84896860-84896879 None:intergenic 20.0%
!! CAACAAAAAAAAATTATGCA+TGG - chr4.1:84896494-84896513 None:intergenic 20.0%
!! GATAGTAAATTATATCACAA+GGG + chr4.1:84897140-84897159 MS.gene026794:intron 20.0%
!! GGTATACAACAATATTATTT+AGG + chr4.1:84898539-84898558 MS.gene026794:intron 20.0%
!! TCAACTATGAAATAATAAAG+CGG + chr4.1:84899194-84899213 MS.gene026794:intron 20.0%
!!! ACTTGACATGAATTTTTTTT+TGG + chr4.1:84897359-84897378 MS.gene026794:intron 20.0%
!!! AGTTGTTATTTTTTTATAGG+TGG + chr4.1:84897257-84897276 MS.gene026794:intron 20.0%
!!! ATAGTTGATATTATAAACCA+TGG - chr4.1:84896684-84896703 None:intergenic 20.0%
!!! ATATCTAAAATTCATTTGTC+AGG + chr4.1:84899032-84899051 MS.gene026794:intron 20.0%
!!! CTAAAACATCATTTTTATTG+TGG + chr4.1:84898361-84898380 MS.gene026794:intron 20.0%
!!! TTGCTATTTAACAATAATCA+GGG + chr4.1:84898051-84898070 MS.gene026794:intron 20.0%
!!! TTTGCTATTTAACAATAATC+AGG + chr4.1:84898050-84898069 MS.gene026794:intron 20.0%
!!! TTTTATATTGCAGTAAAATG+TGG + chr4.1:84896970-84896989 MS.gene026794:intron 20.0%
! AAAGAAAGGTAATGTAATCA+AGG - chr4.1:84896660-84896679 None:intergenic 25.0%
! AAATACTATAGAGCTATGTA+CGG - chr4.1:84897802-84897821 None:intergenic 25.0%
! AAGTAGAAACTTAAAGCAAT+CGG + chr4.1:84899322-84899341 MS.gene026794:intron 25.0%
! AATTTACTATCTTTCTCATC+AGG - chr4.1:84897131-84897150 None:intergenic 25.0%
! ACATCTTAATATGTGACATT+TGG + chr4.1:84898795-84898814 MS.gene026794:intron 25.0%
! AGAAAAACAAAGTTATCATG+TGG - chr4.1:84897326-84897345 None:intergenic 25.0%
! ATAACATTCAAATCCTATGA+GGG + chr4.1:84899125-84899144 MS.gene026794:CDS 25.0%
! CAAATAAAAAATAGAGGGTT+AGG - chr4.1:84897062-84897081 None:intergenic 25.0%
! CATTTGTATCAATGTTATGT+CGG - chr4.1:84898919-84898938 None:intergenic 25.0%
! GTTATATGATGCAGATAAAA+TGG + chr4.1:84897861-84897880 MS.gene026794:intron 25.0%
! TACACAATTCTGATTTAGTA+AGG - chr4.1:84897987-84898006 None:intergenic 25.0%
! TATAAAAGTTTACAGCGTAA+CGG - chr4.1:84896957-84896976 None:intergenic 25.0%
! TATAACATTCAAATCCTATG+AGG + chr4.1:84899124-84899143 MS.gene026794:CDS 25.0%
! TCAAATAGAATCTCAATAGA+AGG - chr4.1:84897218-84897237 None:intergenic 25.0%
! TGAGAATACAAACTTACATT+TGG - chr4.1:84897631-84897650 None:intergenic 25.0%
! TTATAAACCATGGTAAAGAA+AGG - chr4.1:84896674-84896693 None:intergenic 25.0%
! TTTGCAATTGATGTTAATGT+AGG + chr4.1:84898678-84898697 MS.gene026794:intron 25.0%
!! CTATTTGAGATAAATTCTGT+TGG + chr4.1:84897230-84897249 MS.gene026794:intron 25.0%
!! TTTATCATCTAGTTTAATCG+TGG - chr4.1:84899285-84899304 None:intergenic 25.0%
!! TTTTACAACTATATACTCGA+AGG - chr4.1:84898580-84898599 None:intergenic 25.0%
!!! AAAGCAATTGTTTCACTTTT+TGG + chr4.1:84899434-84899453 MS.gene026794:intron 25.0%
!!! TATGCTGTATGTTTTTAGTA+TGG + chr4.1:84897186-84897205 MS.gene026794:intron 25.0%
!!! TTTGATTTTTCTGAGATATG+AGG + chr4.1:84897078-84897097 MS.gene026794:intron 25.0%
AAAGGAAAATTTCTTGCAAG+GGG - chr4.1:84896449-84896468 None:intergenic 30.0%
AAATGTGGTTAATATGGTCA+TGG + chr4.1:84896985-84897004 MS.gene026794:intron 30.0%
AACCATGCATGTTATCAAAT+GGG + chr4.1:84896394-84896413 MS.gene026794:CDS 30.0%
AACTGCTAGAAGAACTAATT+TGG + chr4.1:84896737-84896756 MS.gene026794:CDS 30.0%
AATAGAGGGTTAGGATATAA+AGG - chr4.1:84897053-84897072 None:intergenic 30.0%
AATCTTTGGTTGTTTACATG+TGG + chr4.1:84898622-84898641 MS.gene026794:intron 30.0%
ACAAAAATTACCATTGAGTC+AGG + chr4.1:84897451-84897470 MS.gene026794:intron 30.0%
ACAATAATCAGGGTTTGATA+TGG + chr4.1:84898061-84898080 MS.gene026794:intron 30.0%
ACAGACAAACACATAGATAT+TGG - chr4.1:84897777-84897796 None:intergenic 30.0%
ACTTGATGCCATATTATTTG+AGG - chr4.1:84899554-84899573 None:intergenic 30.0%
AGAAAGGAAAATTTCTTGCA+AGG - chr4.1:84896451-84896470 None:intergenic 30.0%
ATACTTTATATGCCCTTTGA+AGG + chr4.1:84896708-84896727 MS.gene026794:intron 30.0%
ATAGTGACATACTAATTCCA+TGG - chr4.1:84898775-84898794 None:intergenic 30.0%
ATTAAAATGACCTGACTCAA+TGG - chr4.1:84897464-84897483 None:intergenic 30.0%
ATTGTGGTATAGTGAAAGTT+GGG + chr4.1:84898377-84898396 MS.gene026794:intron 30.0%
CAATAATCAGGGTTTGATAT+GGG + chr4.1:84898062-84898081 MS.gene026794:intron 30.0%
CTTGATGCCATATTATTTGA+GGG - chr4.1:84899553-84899572 None:intergenic 30.0%
GAAAGGAAAATTTCTTGCAA+GGG - chr4.1:84896450-84896469 None:intergenic 30.0%
GAAGATAACAAACATCCATT+AGG - chr4.1:84897519-84897538 None:intergenic 30.0%
GCAGTAAAATGTGGTTAATA+TGG + chr4.1:84896979-84896998 MS.gene026794:intron 30.0%
TAACATTCAAATCCTATGAG+GGG + chr4.1:84899126-84899145 MS.gene026794:CDS 30.0%
TACAAACTTACATTTGGAAG+TGG - chr4.1:84897625-84897644 None:intergenic 30.0%
TACATTACCTTTCTTTACCA+TGG + chr4.1:84896664-84896683 MS.gene026794:intron 30.0%
TACTTTATATGCCCTTTGAA+GGG + chr4.1:84896709-84896728 MS.gene026794:intron 30.0%
TATAGGTGGAAAGCTTAATT+TGG + chr4.1:84897271-84897290 MS.gene026794:intron 30.0%
TATTGTGGTATAGTGAAAGT+TGG + chr4.1:84898376-84898395 MS.gene026794:intron 30.0%
TCAGTGAAATCTTTAGATCA+TGG + chr4.1:84899245-84899264 MS.gene026794:intron 30.0%
TCTTTAGATCATGGTTCAAT+TGG + chr4.1:84899254-84899273 MS.gene026794:intron 30.0%
TGACAAATTGATCTGTTCAT+CGG + chr4.1:84899384-84899403 MS.gene026794:intron 30.0%
TTACTAAGATTCTGGACTAA+GGG + chr4.1:84897299-84897318 MS.gene026794:intron 30.0%
! AGAAGAACTAATTTGGAGTT+TGG + chr4.1:84896744-84896763 MS.gene026794:CDS 30.0%
! GCAAATATGTGTTTTCCTAA+TGG + chr4.1:84897501-84897520 MS.gene026794:intron 30.0%
!! AGTCAGGTCATTTTAATCTA+TGG + chr4.1:84897467-84897486 MS.gene026794:intron 30.0%
!!! TTTGGCTTGTTATTTTGTGT+AGG + chr4.1:84899452-84899471 MS.gene026794:intron 30.0%
AAAAACAAGGAAGGTAGAGA+AGG + chr4.1:84899598-84899617 MS.gene026794:CDS 35.0%
AAATAAGATAGACAAGGCGT+AGG - chr4.1:84897011-84897030 None:intergenic 35.0%
AACATCAAGCAACTATAGTC+TGG + chr4.1:84896796-84896815 MS.gene026794:CDS 35.0%
AATTGTCACATGAAGCAAGA+AGG + chr4.1:84898720-84898739 MS.gene026794:CDS 35.0%
ACCATGCATGTTATCAAATG+GGG + chr4.1:84896395-84896414 MS.gene026794:CDS 35.0%
ACTTCTCTCCATATTTGTAG+AGG - chr4.1:84899070-84899089 None:intergenic 35.0%
ATTGTTGTATACCTTGATCC+TGG - chr4.1:84898532-84898551 None:intergenic 35.0%
ATTTGCAATATGTTCTGCTG+AGG - chr4.1:84898132-84898151 None:intergenic 35.0%
CAAAGATTGTGACTATAGCT+TGG - chr4.1:84896539-84896558 None:intergenic 35.0%
CATTTGAGCATTCAATGCAA+CGG - chr4.1:84898961-84898980 None:intergenic 35.0%
CTCAACTTAAGAGCAGTTAT+TGG + chr4.1:84898490-84898509 MS.gene026794:CDS 35.0%
GAACAGATCAATTTGTCAGT+TGG - chr4.1:84899382-84899401 None:intergenic 35.0%
GAACCATGCATGTTATCAAA+TGG + chr4.1:84896393-84896412 MS.gene026794:CDS 35.0%
GATGTAGTCCTCTACAAATA+TGG + chr4.1:84899059-84899078 MS.gene026794:CDS 35.0%
GTTACTAAGATTCTGGACTA+AGG + chr4.1:84897298-84897317 MS.gene026794:intron 35.0%
TCTCAAGTATGGATGGTAAA+AGG - chr4.1:84897654-84897673 None:intergenic 35.0%
TGGAAGAGTTACTAAGATTC+TGG + chr4.1:84897291-84897310 MS.gene026794:intron 35.0%
TTATACAGTTCCTAGAGAGA+TGG + chr4.1:84899483-84899502 MS.gene026794:CDS 35.0%
! AATTGATCTGTTCATCGGTT+TGG + chr4.1:84899389-84899408 MS.gene026794:intron 35.0%
! GTTGCTTGATGTTTTCCTTT+AGG - chr4.1:84896789-84896808 None:intergenic 35.0%
!!! CTTGTTATTTTGTGTAGGCT+TGG + chr4.1:84899457-84899476 MS.gene026794:intron 35.0%
!!! GTCGACATAGTTTTAAAACG+CGG + chr4.1:84896907-84896926 MS.gene026794:intron 35.0%
AAGGTTTGTGACTGTGATTG+TGG - chr4.1:84896641-84896660 None:intergenic 40.0%
ACACATGTAGTGAGACCTAA+AGG + chr4.1:84896771-84896790 MS.gene026794:CDS 40.0%
AGACATGCGGAACAAAAACA+AGG + chr4.1:84899585-84899604 MS.gene026794:CDS 40.0%
AGAGCAGTTATTGGACTAAG+TGG + chr4.1:84898499-84898518 MS.gene026794:CDS 40.0%
ATAGTGAAAGTTGGGATTGG+AGG + chr4.1:84898385-84898404 MS.gene026794:intron 40.0%
ATGCGGAACAAAAACAAGGA+AGG + chr4.1:84899589-84899608 MS.gene026794:CDS 40.0%
ATGGGAGAACTATCAGATGA+TGG + chr4.1:84898080-84898099 MS.gene026794:CDS 40.0%
ATTCCATGGCTCAGAAAAAC+TGG - chr4.1:84898761-84898780 None:intergenic 40.0%
CAATTGATGTAGCCGAAATG+TGG + chr4.1:84896585-84896604 MS.gene026794:intron 40.0%
CCATCCATACTTGAGATTGA+AGG + chr4.1:84897658-84897677 MS.gene026794:intron 40.0%
CCTTCAATCTCAAGTATGGA+TGG - chr4.1:84897661-84897680 None:intergenic 40.0%
CTGATCAGAATGATGACATC+CGG + chr4.1:84898284-84898303 MS.gene026794:intron 40.0%
GGTATAGTGAAAGTTGGGAT+TGG + chr4.1:84898382-84898401 MS.gene026794:intron 40.0%
GTCATGTTGTAGAAGACATG+CGG + chr4.1:84899572-84899591 MS.gene026794:CDS 40.0%
TAACGTCTGTGACCACATTT+CGG - chr4.1:84896600-84896619 None:intergenic 40.0%
TGCAGTCATGATTGTGGTTA+AGG + chr4.1:84896931-84896950 MS.gene026794:intron 40.0%
TTGGAAGTGGAAGTGATTCA+AGG - chr4.1:84897612-84897631 None:intergenic 40.0%
TTGTGACTATAGCTTGGCTA+AGG - chr4.1:84896533-84896552 None:intergenic 40.0%
! ACCCCATTTGATAACATGCA+TGG - chr4.1:84896399-84896418 None:intergenic 40.0%
! AGATGATGGTCCAGATGATT+GGG + chr4.1:84898094-84898113 MS.gene026794:CDS 40.0%
! GTCAGTTGGTTCAAGTCTAA+TGG - chr4.1:84899368-84899387 None:intergenic 40.0%
! TGTGTATTCAGAAAGCGTAG+TGG + chr4.1:84898991-84899010 MS.gene026794:intron 40.0%
! TTACCAGTTTTTCTGAGCCA+TGG + chr4.1:84898755-84898774 MS.gene026794:CDS 40.0%
!! GGTGATAATGGTTTGAGGTA+TGG + chr4.1:84896831-84896850 MS.gene026794:intron 40.0%
!! GTCTTGGTGATAATGGTTTG+AGG + chr4.1:84896826-84896845 MS.gene026794:CDS 40.0%
!!! TCTGCAACTTGTTTTGCCAT+GGG + chr4.1:84898439-84898458 MS.gene026794:CDS 40.0%
!!! TTCTGCAACTTGTTTTGCCA+TGG + chr4.1:84898438-84898457 MS.gene026794:CDS 40.0%
AAAAAAGGCTCACCCCTCAT+AGG - chr4.1:84899141-84899160 None:intergenic 45.0%
AAGCCACCAAGTATAGCTAC+AGG - chr4.1:84897911-84897930 None:intergenic 45.0%
AATCACGAGAACAATCGCAC+CGG - chr4.1:84898306-84898325 None:intergenic 45.0%
ACCAAGTATAGCTACAGGTC+GGG - chr4.1:84897906-84897925 None:intergenic 45.0%
AGATGGCTGAAGTCTCCAAT+TGG + chr4.1:84899500-84899519 MS.gene026794:CDS 45.0%
CACCAAGTATAGCTACAGGT+CGG - chr4.1:84897907-84897926 None:intergenic 45.0%
CACGCCTTCAATCTCAAGTA+TGG - chr4.1:84897665-84897684 None:intergenic 45.0%
CAGTTATTGGACTAAGTGGC+TGG + chr4.1:84898503-84898522 MS.gene026794:CDS 45.0%
CGGATGTCATCATTCTGATC+AGG - chr4.1:84898286-84898305 None:intergenic 45.0%
CTCAAACCTTGTGTTCAGCA+GGG + chr4.1:84899093-84899112 MS.gene026794:CDS 45.0%
GCATGTTATCAAATGGGGTC+TGG + chr4.1:84896400-84896419 MS.gene026794:CDS 45.0%
TCTAAACCCTCCCAATCATC+TGG - chr4.1:84898107-84898126 None:intergenic 45.0%
TGGGGGACCCTCAAATAATA+TGG + chr4.1:84899543-84899562 MS.gene026794:CDS 45.0%
TTGAAACCCTGCTGAACACA+AGG - chr4.1:84899102-84899121 None:intergenic 45.0%
! CAGATGATGGTCCAGATGAT+TGG + chr4.1:84898093-84898112 MS.gene026794:CDS 45.0%
! CTGCATGGTCTTGGTGATAA+TGG + chr4.1:84896819-84896838 MS.gene026794:CDS 45.0%
! TATATGCCCTTTGAAGGGAG+TGG + chr4.1:84896714-84896733 MS.gene026794:intron 45.0%
! TATCAAATGGGGTCTGGTTC+TGG + chr4.1:84896406-84896425 MS.gene026794:CDS 45.0%
! TGTTTTGCCATGGGAAGGTA+TGG + chr4.1:84898448-84898467 MS.gene026794:CDS 45.0%
!! CTCTTAAGTTGAGACTGCAG+GGG - chr4.1:84898483-84898502 None:intergenic 45.0%
!! GCTCTTAAGTTGAGACTGCA+GGG - chr4.1:84898484-84898503 None:intergenic 45.0%
!! GTTTGTTGTCCGACATGTGT+GGG + chr4.1:84898890-84898909 MS.gene026794:intron 45.0%
!! TGCTCTTAAGTTGAGACTGC+AGG - chr4.1:84898485-84898504 None:intergenic 45.0%
!! TGTTTGTTGTCCGACATGTG+TGG + chr4.1:84898889-84898908 MS.gene026794:intron 45.0%
!!! CAACTTGTTTTGCCATGGGA+AGG + chr4.1:84898443-84898462 MS.gene026794:CDS 45.0%
ACCCGACCTGTAGCTATACT+TGG + chr4.1:84897902-84897921 MS.gene026794:CDS 50.0%
AGCAGTTCCACTCCCTTCAA+AGG - chr4.1:84896724-84896743 None:intergenic 50.0%
AGTATAGCTACAGGTCGGGT+AGG - chr4.1:84897902-84897921 None:intergenic 50.0%
ATAGTCTGGCTGCATGGTCT+TGG + chr4.1:84896810-84896829 MS.gene026794:CDS 50.0%
CGACCTGTAGCTATACTTGG+TGG + chr4.1:84897905-84897924 MS.gene026794:CDS 50.0%
GAGACTTCAGCCATCTCTCT+AGG - chr4.1:84899496-84899515 None:intergenic 50.0%
GATGGTCCAGATGATTGGGA+GGG + chr4.1:84898098-84898117 MS.gene026794:CDS 50.0%
GCAACTATAGTCTGGCTGCA+TGG + chr4.1:84896804-84896823 MS.gene026794:CDS 50.0%
GCAGTTCCACTCCCTTCAAA+GGG - chr4.1:84896723-84896742 None:intergenic 50.0%
GCCAGCTGATGGTACTTTCA+AGG + chr4.1:84898166-84898185 MS.gene026794:intron 50.0%
GCCATTTCCATACCTTCCCA+TGG - chr4.1:84898458-84898477 None:intergenic 50.0%
GCTCAAACCTTGTGTTCAGC+AGG + chr4.1:84899092-84899111 MS.gene026794:CDS 50.0%
GCTGAAGTCTCCAATTGGCT+TGG + chr4.1:84899505-84899524 MS.gene026794:CDS 50.0%
GGGATTGGAGGCTTCAGTAT+GGG + chr4.1:84898397-84898416 MS.gene026794:CDS 50.0%
TGATGGTCCAGATGATTGGG+AGG + chr4.1:84898097-84898116 MS.gene026794:CDS 50.0%
TGGGATTGGAGGCTTCAGTA+TGG + chr4.1:84898396-84898415 MS.gene026794:CDS 50.0%
TGTGACTGTGATTGTGGTCG+CGG - chr4.1:84896635-84896654 None:intergenic 50.0%
! GCCATGGGAAGGTATGGAAA+TGG + chr4.1:84898454-84898473 MS.gene026794:CDS 50.0%
!! AATTGGCTTGGCTCATGCCT+GGG + chr4.1:84899517-84899536 MS.gene026794:CDS 50.0%
!! GAAAGTACCATCAGCTGGCT+CGG - chr4.1:84898165-84898184 None:intergenic 50.0%
!! GCCTTGAAAGTACCATCAGC+TGG - chr4.1:84898170-84898189 None:intergenic 50.0%
!! TTAAGTTGAGACTGCAGGGG+AGG - chr4.1:84898480-84898499 None:intergenic 50.0%
CAGGCATGAGCCAAGCCAAT+TGG - chr4.1:84899518-84899537 None:intergenic 55.0%
TTGTCAACCGAGCCAGCTGA+TGG + chr4.1:84898155-84898174 MS.gene026794:CDS 55.0%
! TGTCGGTGTCCCACACATGT+CGG - chr4.1:84898902-84898921 None:intergenic 55.0%
!! ATTGGCTTGGCTCATGCCTG+GGG + chr4.1:84899518-84899537 MS.gene026794:CDS 55.0%
!! CAATTGGCTTGGCTCATGCC+TGG + chr4.1:84899516-84899535 MS.gene026794:CDS 55.0%
ACAGGTCGGGTAGGAGCAGT+TGG - chr4.1:84897893-84897912 None:intergenic 60.0%
CAGGTCGGGTAGGAGCAGTT+GGG - chr4.1:84897892-84897911 None:intergenic 60.0%
CGCGGCTGCAGTCATGATTG+TGG + chr4.1:84896925-84896944 MS.gene026794:intron 60.0%
TTGGCTCATGCCTGGGGCTT+GGG + chr4.1:84899524-84899543 MS.gene026794:CDS 60.0%
!! GGACTAAGTGGCTGGCTTCC+AGG + chr4.1:84898511-84898530 MS.gene026794:CDS 60.0%
!! GTGGCTGGCTTCCAGGATCA+AGG + chr4.1:84898518-84898537 MS.gene026794:CDS 60.0%
CTTGGCTCATGCCTGGGGCT+TGG + chr4.1:84899523-84899542 MS.gene026794:CDS 65.0%
TGGCTCATGCCTGGGGCTTG+GGG + chr4.1:84899525-84899544 MS.gene026794:CDS 65.0%
GGCTCATGCCTGGGGCTTGG+GGG + chr4.1:84899526-84899545 MS.gene026794:CDS 70.0%
TTGAGGGTCCCCCAAGCCCC+AGG - chr4.1:84899537-84899556 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 84896391 84899627 84896391 ID=MS.gene026794
chr4.1 mRNA 84896391 84899627 84896391 ID=MS.gene026794.t1;Parent=MS.gene026794
chr4.1 exon 84896391 84896427 84896391 ID=MS.gene026794.t1.exon1;Parent=MS.gene026794.t1
chr4.1 CDS 84896391 84896427 84896391 ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1
chr4.1 exon 84896730 84896847 84896730 ID=MS.gene026794.t1.exon2;Parent=MS.gene026794.t1
chr4.1 CDS 84896730 84896847 84896730 ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1
chr4.1 exon 84897597 84897633 84897597 ID=MS.gene026794.t1.exon3;Parent=MS.gene026794.t1
chr4.1 CDS 84897597 84897633 84897597 ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1
chr4.1 exon 84897875 84897944 84897875 ID=MS.gene026794.t1.exon4;Parent=MS.gene026794.t1
chr4.1 CDS 84897875 84897944 84897875 ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1
chr4.1 exon 84898072 84898176 84898072 ID=MS.gene026794.t1.exon5;Parent=MS.gene026794.t1
chr4.1 CDS 84898072 84898176 84898072 ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1
chr4.1 exon 84898389 84898539 84898389 ID=MS.gene026794.t1.exon6;Parent=MS.gene026794.t1
chr4.1 CDS 84898389 84898539 84898389 ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1
chr4.1 exon 84898700 84898782 84898700 ID=MS.gene026794.t1.exon7;Parent=MS.gene026794.t1
chr4.1 CDS 84898700 84898782 84898700 ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1
chr4.1 exon 84899054 84899147 84899054 ID=MS.gene026794.t1.exon8;Parent=MS.gene026794.t1
chr4.1 CDS 84899054 84899147 84899054 ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1
chr4.1 exon 84899474 84899627 84899474 ID=MS.gene026794.t1.exon9;Parent=MS.gene026794.t1
chr4.1 CDS 84899474 84899627 84899474 ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1
Gene Sequence

>MS.gene026794

ATGAACCATGCATGTTATCAAATGGGGTCTGGTTCTGGTTAGTTTTTCTTCATTACCCCTTGCAAGAAATTTTCCTTTCTTGAAAATTCATTTTTACAATCCATGCATAATTTTTTTTTGTTGTCATCAATGATAAATTCCTTAGCCAAGCTATAGTCACAATCTTTGATACTGCGAAAAATTATATTCAAATACAATTGATGTAGCCGAAATGTGGTCACAGACGTTAAAAACATTGACGCCGCGACCACAATCACAGTCACAAACCTTGATTACATTACCTTTCTTTACCATGGTTTATAATATCAACTATCTTTATACTTTATATGCCCTTTGAAGGGAGTGGAACTGCTAGAAGAACTAATTTGGAGTTTGGAAAGACACATGTAGTGAGACCTAAAGGAAAACATCAAGCAACTATAGTCTGGCTGCATGGTCTTGGTGATAATGGTTTGAGGTATGGATACCATCTTTTCAATACAATTAGATTATATGTCTCATTTTTTTTATAACACTGTCGACATAGTTTTAAAACGCGGCTGCAGTCATGATTGTGGTTAAGGCCGTTACGCTGTAAACTTTTATATTGCAGTAAAATGTGGTTAATATGGTCATGGCCTACGCCTTGTCTATCTTATTTTCTTATACTAATTTTTTTTCCTTTATATCCTAACCCTCTATTTTTTATTTGATTTTTCTGAGATATGAGGTAATTTTGATCAGAATTTCATACTCTTCCTGATGAGAAAGATAGTAAATTATATCACAAGGGTCCAAATTAACTACTACTTTTTTTATGCTGTATGTTTTTAGTATGGAGCTTTCCTTCTATTGAGATTCTATTTGAGATAAATTCTGTTGGAAAAAGTTGTTATTTTTTTATAGGTGGAAAGCTTAATTTGGAAGAGTTACTAAGATTCTGGACTAAGGGACCACATGATAACTTTGTTTTTCTACTAAATTGAGTAACTTGACATGAATTTTTTTTTGGTACAGTACTTGACATGACTTTTAAATTGACAGAAGAATATTTATATGAATAGCAAAATAATTAATAGTCACAAAAATTACCATTGAGTCAGGTCATTTTAATCTATGGATTTTTATCTAGCAAATATGTGTTTTCCTAATGGATGTTTGTTATCTTCTTTTATATTCTAATCTTAGACAAACATAATAAAAAATTTAAGCTTGGTTTTCTTGCAGTTCATATCAGCTCCTTGAATCACTTCCACTTCCAAATGTAAGTTTGTATTCTCACCTTTTACCATCCATACTTGAGATTGAAGGCGTGTCTCGTGTACAGTACATGTCAGTGTTCGATACGAAACAACATCAACACATGTGATTACATTCAATCATTTCAATTTTATCAAATTATTACCAATATCTATGTGTTTGTCTGTGTCCGTACATAGCTCTATAGTATTTCGATAAATTTATTCTCATGTACTTAACATATGATATGATGTTATATGATGCAGATAAAATGGATTTGCCCAACTGCTCCTACCCGACCTGTAGCTATACTTGGTGGCTTTTCTTGCACTGCATGTAATGTTAAATCCCTCTAGTTTTCTATAAGATTTTTTTCCTTACTAAATCAGAATTGTGTAACTATTAAATATGTACACATAAGTATATATTATAACCTTATATTTTGCTATTTAACAATAATCAGGGTTTGATATGGGAGAACTATCAGATGATGGTCCAGATGATTGGGAGGGTTTAGATGCCTCAGCAGAACATATTGCAAATTTGTTGTCAACCGAGCCAGCTGATGGTACTTTCAAGGCTAAATATATTTGTTCTTAACCCTCATAAAAAATATAAAGATTTCATTTATCTAATTCTAATTTTAAGCACATTCAATTTGATACTTGATCGTACCTGATCAGAATGATGACATCCGGTGCGATTGTTCTCGTGATTGATATTTTTCTAGATTCTTCTATTGATGAATTTCACTAAAACATCATTTTTATTGTGGTATAGTGAAAGTTGGGATTGGAGGCTTCAGTATGGGTGCTGCAACAGCTCTATATTCTGCAACTTGTTTTGCCATGGGAAGGTATGGAAATGGCCTCCCCTGCAGTCTCAACTTAAGAGCAGTTATTGGACTAAGTGGCTGGCTTCCAGGATCAAGGTATACAACAATATTATTTAGGGACGTTGTTCAAATACCTTCGAGTATATAGTTGTAAAATGATCATTAGTACACATTATTAAATCTTTGGTTGTTTACATGTGGTCACATACTAAACTCTAATGATTGACACTATGATTTGCAATTGATGTTAATGTAGGAGCTTAAAGAGCAAGATAGAATTGTCACATGAAGCAAGAAGGAGAGCTGCTTCATTACCAGTTTTTCTGAGCCATGGAATTAGTATGTCACTATACATCTTAATATGTGACATTTGGTTTTTTATTTAATTAGGATGTTGGTTATAAGTTACATATTATTATAGCACTGACACTTCAAATTAAAGAAGTGTTTGTTGTCCGACATGTGTGGGACACCGACATAACATTGATACAAATGTTTATGTTCTGTTTCGTCTCCGTTGCATTGAATGCTCAAATGATGATTTATTTGTGTATTCAGAAAGCGTAGTGGCAGTTATTTTTTAAGCTAATATCTAAAATTCATTTGTCAGGTGATGATGTAGTCCTCTACAAATATGGAGAGAAGTCAGCTCAAACCTTGTGTTCAGCAGGGTTTCAATATATAACATTCAAATCCTATGAGGGGTGAGCCTTTTTTTAAAAAAATTATAAATTTTTTAGTAGAATTAACTCAACTATGAAATAATAAAGCGGTGTTTTAAAAATCATACTTGAGATCAAATCAGTGAAATCTTTAGATCATGGTTCAATTGGTTCAACCACGATTAAACTAGATGATAAATAAAAAAACTAAAAAAAAAGTAGAAACTTAAAGCAATCGGTTGAAACAACTGTAGTTCAACCATTAGACTTGAACCAACTGACAAATTGATCTGTTCATCGGTTTGGTCTAATTTTTAAAACATTAGTTAAAGCAATTGTTTCACTTTTTGGCTTGTTATTTTGTGTAGGCTTGGTCATTATACAGTTCCTAGAGAGATGGCTGAAGTCTCCAATTGGCTTGGCTCATGCCTGGGGCTTGGGGGACCCTCAAATAATATGGCATCAAGTCATGTTGTAGAAGACATGCGGAACAAAAACAAGGAAGGTAGAGAAGGACATTAA

Protein sequence

>MS.gene026794.t1

MNHACYQMGSGSGSGTARRTNLEFGKTHVVRPKGKHQATIVWLHGLGDNGLSSYQLLESLPLPNIKWICPTAPTRPVAILGGFSCTAWFDMGELSDDGPDDWEGLDASAEHIANLLSTEPADVKVGIGGFSMGAATALYSATCFAMGRYGNGLPCSLNLRAVIGLSGWLPGSRSLKSKIELSHEARRRAASLPVFLSHGISDDVVLYKYGEKSAQTLCSAGFQYITFKSYEGLGHYTVPREMAEVSNWLGSCLGLGGPSNNMASSHVVEDMRNKNKEGREGH