Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026794.t1 | XP_013454687.1 | 97.2 | 282 | 6 | 1 | 1 | 282 | 1 | 280 | 2.40E-157 | 564.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026794.t1 | O95372 | 34.2 | 225 | 124 | 5 | 35 | 253 | 22 | 228 | 1.7e-26 | 121.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026794.t1 | A0A072UHW3 | 97.2 | 282 | 6 | 1 | 1 | 282 | 1 | 280 | 1.7e-157 | 564.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene026794 | MS.gene038854 | PPI |
MS.gene026794 | MS.gene37311 | PPI |
MS.gene067343 | MS.gene026794 | PPI |
MS.gene026794 | MS.gene83338 | PPI |
MS.gene026794 | MS.gene86352 | PPI |
MS.gene026794 | MS.gene89061 | PPI |
MS.gene36243 | MS.gene026794 | PPI |
MS.gene034040 | MS.gene026794 | PPI |
MS.gene026794 | MS.gene79485 | PPI |
MS.gene026794 | MS.gene067344 | PPI |
MS.gene026794 | MS.gene034042 | PPI |
MS.gene026794 | MS.gene034041 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026794.t1 | MTR_4g011320 | 97.163 | 282 | 6 | 1 | 1 | 282 | 1 | 280 | 0.0 | 562 |
MS.gene026794.t1 | MTR_2g103140 | 82.692 | 260 | 42 | 2 | 1 | 260 | 1 | 257 | 1.84e-145 | 408 |
MS.gene026794.t1 | MTR_2g054780 | 65.432 | 243 | 84 | 0 | 15 | 257 | 10 | 252 | 5.60e-118 | 339 |
MS.gene026794.t1 | MTR_3g107630 | 67.373 | 236 | 77 | 0 | 22 | 257 | 19 | 254 | 6.55e-116 | 333 |
MS.gene026794.t1 | MTR_2g054780 | 63.374 | 243 | 82 | 1 | 15 | 257 | 10 | 245 | 3.27e-111 | 321 |
MS.gene026794.t1 | MTR_4g132890 | 30.088 | 226 | 131 | 8 | 37 | 253 | 4 | 211 | 6.99e-20 | 85.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026794.t1 | AT1G52700 | 73.684 | 247 | 63 | 1 | 11 | 257 | 9 | 253 | 4.37e-130 | 369 |
MS.gene026794.t1 | AT1G52700 | 73.684 | 247 | 63 | 1 | 11 | 257 | 9 | 253 | 4.37e-130 | 369 |
MS.gene026794.t1 | AT1G52700 | 73.469 | 245 | 63 | 1 | 13 | 257 | 2 | 244 | 9.78e-129 | 366 |
MS.gene026794.t1 | AT3G15650 | 66.304 | 276 | 70 | 2 | 1 | 257 | 1 | 272 | 1.10e-125 | 359 |
MS.gene026794.t1 | AT3G15650 | 71.206 | 257 | 70 | 1 | 1 | 257 | 1 | 253 | 5.25e-122 | 349 |
MS.gene026794.t1 | AT3G15650 | 69.582 | 263 | 74 | 1 | 1 | 257 | 1 | 263 | 9.41e-121 | 346 |
MS.gene026794.t1 | AT5G20060 | 63.855 | 249 | 89 | 1 | 9 | 257 | 5 | 252 | 1.48e-119 | 343 |
MS.gene026794.t1 | AT5G20060 | 63.855 | 249 | 89 | 1 | 9 | 257 | 5 | 252 | 1.48e-119 | 343 |
MS.gene026794.t1 | AT5G20060 | 63.855 | 249 | 89 | 1 | 9 | 257 | 5 | 252 | 1.48e-119 | 343 |
MS.gene026794.t1 | AT5G20060 | 63.855 | 249 | 89 | 1 | 9 | 257 | 5 | 252 | 1.48e-119 | 343 |
MS.gene026794.t1 | AT1G52700 | 73.134 | 201 | 54 | 0 | 57 | 257 | 1 | 201 | 5.96e-105 | 304 |
MS.gene026794.t1 | AT1G52700 | 75.661 | 189 | 44 | 1 | 11 | 199 | 9 | 195 | 1.94e-100 | 292 |
MS.gene026794.t1 | AT1G52700 | 75.661 | 189 | 44 | 1 | 11 | 199 | 9 | 195 | 1.94e-100 | 292 |
MS.gene026794.t1 | AT1G51300 | 39.544 | 263 | 142 | 3 | 6 | 257 | 8 | 264 | 4.00e-58 | 187 |
MS.gene026794.t1 | AT1G51300 | 41.204 | 216 | 119 | 2 | 16 | 229 | 27 | 236 | 3.54e-53 | 174 |
MS.gene026794.t1 | AT1G52695 | 43.333 | 210 | 112 | 2 | 14 | 222 | 3 | 206 | 4.68e-53 | 173 |
MS.gene026794.t1 | AT1G51300 | 42.675 | 157 | 82 | 2 | 16 | 170 | 16 | 166 | 4.38e-40 | 138 |
MS.gene026794.t1 | AT1G47786 | 46.296 | 162 | 75 | 4 | 16 | 173 | 33 | 186 | 4.01e-37 | 130 |
MS.gene026794.t1 | AT1G52470 | 37.383 | 214 | 116 | 5 | 22 | 235 | 13 | 208 | 4.36e-37 | 132 |
MS.gene026794.t1 | AT1G52460 | 38.528 | 231 | 115 | 7 | 29 | 255 | 13 | 220 | 1.75e-36 | 130 |
MS.gene026794.t1 | AT1G52470 | 39.326 | 178 | 90 | 5 | 22 | 199 | 13 | 172 | 1.54e-32 | 118 |
MS.gene026794.t1 | AT1G52470 | 39.326 | 178 | 90 | 5 | 22 | 199 | 13 | 172 | 1.60e-32 | 118 |
MS.gene026794.t1 | AT1G52440 | 34.135 | 208 | 84 | 4 | 29 | 234 | 17 | 173 | 9.07e-27 | 103 |
MS.gene026794.t1 | AT1G47780 | 52.727 | 110 | 49 | 1 | 64 | 173 | 23 | 129 | 8.38e-26 | 99.4 |
MS.gene026794.t1 | AT4G22300 | 31.050 | 219 | 124 | 7 | 40 | 249 | 51 | 251 | 5.89e-22 | 92.8 |
MS.gene026794.t1 | AT4G22305 | 31.507 | 219 | 123 | 8 | 40 | 249 | 6 | 206 | 6.26e-21 | 89.4 |
Find 80 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGCTCATGCCTGGGGCTT+GGG | 0.096496 | 4.1:+84899524 | MS.gene026794:CDS |
TGGCTCATGCCTGGGGCTTG+GGG | 0.138001 | 4.1:+84899525 | MS.gene026794:CDS |
CTTGGCTCATGCCTGGGGCT+TGG | 0.151372 | 4.1:+84899523 | MS.gene026794:CDS |
CAATTGGCTTGGCTCATGCC+TGG | 0.224859 | 4.1:+84899516 | MS.gene026794:CDS |
CTCAACTTAAGAGCAGTTAT+TGG | 0.234690 | 4.1:+84898490 | MS.gene026794:CDS |
AGAAGAACTAATTTGGAGTT+TGG | 0.266947 | 4.1:+84896744 | MS.gene026794:CDS |
GTTATATGATGCAGATAAAA+TGG | 0.282666 | 4.1:+84897861 | MS.gene026794:intron |
GGACTAAGTGGCTGGCTTCC+AGG | 0.288410 | 4.1:+84898511 | MS.gene026794:CDS |
CTGCATGGTCTTGGTGATAA+TGG | 0.289266 | 4.1:+84896819 | MS.gene026794:CDS |
TATCAAATGGGGTCTGGTTC+TGG | 0.310234 | 4.1:+84896406 | MS.gene026794:CDS |
AATTGGCTTGGCTCATGCCT+GGG | 0.311627 | 4.1:+84899517 | MS.gene026794:CDS |
ACAATAATCAGGGTTTGATA+TGG | 0.314213 | 4.1:+84898061 | MS.gene026794:intron |
AACTGCTAGAAGAACTAATT+TGG | 0.328772 | 4.1:+84896737 | MS.gene026794:CDS |
GAACCATGCATGTTATCAAA+TGG | 0.366787 | 4.1:+84896393 | MS.gene026794:CDS |
TGGGATTGGAGGCTTCAGTA+TGG | 0.372915 | 4.1:+84898396 | MS.gene026794:CDS |
GATGTAGTCCTCTACAAATA+TGG | 0.381501 | 4.1:+84899059 | MS.gene026794:CDS |
CAGGCATGAGCCAAGCCAAT+TGG | 0.382122 | 4.1:-84899515 | None:intergenic |
CAGATGATGGTCCAGATGAT+TGG | 0.393245 | 4.1:+84898093 | MS.gene026794:CDS |
AACCATGCATGTTATCAAAT+GGG | 0.399917 | 4.1:+84896394 | MS.gene026794:CDS |
TATTGTGGTATAGTGAAAGT+TGG | 0.404396 | 4.1:+84898376 | MS.gene026794:intron |
GGCTCATGCCTGGGGCTTGG+GGG | 0.436395 | 4.1:+84899526 | MS.gene026794:CDS |
GCTCAAACCTTGTGTTCAGC+AGG | 0.437434 | 4.1:+84899092 | MS.gene026794:CDS |
ATTGTGGTATAGTGAAAGTT+GGG | 0.439268 | 4.1:+84898377 | MS.gene026794:intron |
CAATAATCAGGGTTTGATAT+GGG | 0.441882 | 4.1:+84898062 | MS.gene026794:intron |
ACTTGATGCCATATTATTTG+AGG | 0.443726 | 4.1:-84899551 | None:intergenic |
CTTGATGCCATATTATTTGA+GGG | 0.445143 | 4.1:-84899550 | None:intergenic |
ATAGTCTGGCTGCATGGTCT+TGG | 0.451510 | 4.1:+84896810 | MS.gene026794:CDS |
TCTAAACCCTCCCAATCATC+TGG | 0.452958 | 4.1:-84898104 | None:intergenic |
ACAGGTCGGGTAGGAGCAGT+TGG | 0.454599 | 4.1:-84897890 | None:intergenic |
TATAACATTCAAATCCTATG+AGG | 0.464278 | 4.1:+84899124 | MS.gene026794:CDS |
AGATGATGGTCCAGATGATT+GGG | 0.466419 | 4.1:+84898094 | MS.gene026794:CDS |
AACATCAAGCAACTATAGTC+TGG | 0.471029 | 4.1:+84896796 | MS.gene026794:CDS |
GCCATGGGAAGGTATGGAAA+TGG | 0.473050 | 4.1:+84898454 | MS.gene026794:CDS |
TGCTCTTAAGTTGAGACTGC+AGG | 0.479567 | 4.1:-84898482 | None:intergenic |
GGGATTGGAGGCTTCAGTAT+GGG | 0.484847 | 4.1:+84898397 | MS.gene026794:CDS |
ATTGTTGTATACCTTGATCC+TGG | 0.487269 | 4.1:-84898529 | None:intergenic |
TTGGAAGTGGAAGTGATTCA+AGG | 0.493512 | 4.1:-84897609 | None:intergenic |
GCATGTTATCAAATGGGGTC+TGG | 0.494637 | 4.1:+84896400 | MS.gene026794:CDS |
GCTGAAGTCTCCAATTGGCT+TGG | 0.496475 | 4.1:+84899505 | MS.gene026794:CDS |
ATAGTGAAAGTTGGGATTGG+AGG | 0.499249 | 4.1:+84898385 | MS.gene026794:intron |
TACAAACTTACATTTGGAAG+TGG | 0.499274 | 4.1:-84897622 | None:intergenic |
ATTGGCTTGGCTCATGCCTG+GGG | 0.502183 | 4.1:+84899518 | MS.gene026794:CDS |
AGATGGCTGAAGTCTCCAAT+TGG | 0.504814 | 4.1:+84899500 | MS.gene026794:CDS |
GGTATAGTGAAAGTTGGGAT+TGG | 0.506683 | 4.1:+84898382 | MS.gene026794:intron |
GCCTTGAAAGTACCATCAGC+TGG | 0.508974 | 4.1:-84898167 | None:intergenic |
CAGTTATTGGACTAAGTGGC+TGG | 0.511811 | 4.1:+84898503 | MS.gene026794:CDS |
ACCCGACCTGTAGCTATACT+TGG | 0.523563 | 4.1:+84897902 | MS.gene026794:CDS |
GAGACTTCAGCCATCTCTCT+AGG | 0.530300 | 4.1:-84899493 | None:intergenic |
ACACATGTAGTGAGACCTAA+AGG | 0.532303 | 4.1:+84896771 | MS.gene026794:CDS |
ACCAAGTATAGCTACAGGTC+GGG | 0.532936 | 4.1:-84897903 | None:intergenic |
GAAAGTACCATCAGCTGGCT+CGG | 0.534696 | 4.1:-84898162 | None:intergenic |
CTCAAACCTTGTGTTCAGCA+GGG | 0.534728 | 4.1:+84899093 | MS.gene026794:CDS |
GTGGCTGGCTTCCAGGATCA+AGG | 0.539805 | 4.1:+84898518 | MS.gene026794:CDS |
AGAGCAGTTATTGGACTAAG+TGG | 0.552676 | 4.1:+84898499 | MS.gene026794:CDS |
GTCTTGGTGATAATGGTTTG+AGG | 0.560801 | 4.1:+84896826 | MS.gene026794:CDS |
ATAACATTCAAATCCTATGA+GGG | 0.562724 | 4.1:+84899125 | MS.gene026794:CDS |
AAGCCACCAAGTATAGCTAC+AGG | 0.562898 | 4.1:-84897908 | None:intergenic |
CAGGTCGGGTAGGAGCAGTT+GGG | 0.563753 | 4.1:-84897889 | None:intergenic |
GCTCTTAAGTTGAGACTGCA+GGG | 0.570121 | 4.1:-84898481 | None:intergenic |
CGACCTGTAGCTATACTTGG+TGG | 0.573380 | 4.1:+84897905 | MS.gene026794:CDS |
GCCATTTCCATACCTTCCCA+TGG | 0.577058 | 4.1:-84898455 | None:intergenic |
ATGGGAGAACTATCAGATGA+TGG | 0.578285 | 4.1:+84898080 | MS.gene026794:CDS |
TTGAAACCCTGCTGAACACA+AGG | 0.578854 | 4.1:-84899099 | None:intergenic |
GCAACTATAGTCTGGCTGCA+TGG | 0.583738 | 4.1:+84896804 | MS.gene026794:CDS |
TTGTCAACCGAGCCAGCTGA+TGG | 0.587122 | 4.1:+84898155 | MS.gene026794:CDS |
ACCCCATTTGATAACATGCA+TGG | 0.589572 | 4.1:-84896396 | None:intergenic |
ACTTCTCTCCATATTTGTAG+AGG | 0.592373 | 4.1:-84899067 | None:intergenic |
AATTGTCACATGAAGCAAGA+AGG | 0.595405 | 4.1:+84898720 | MS.gene026794:CDS |
TTATACAGTTCCTAGAGAGA+TGG | 0.595540 | 4.1:+84899483 | MS.gene026794:CDS |
ATAGTGACATACTAATTCCA+TGG | 0.603581 | 4.1:-84898772 | None:intergenic |
ATTTGCAATATGTTCTGCTG+AGG | 0.608568 | 4.1:-84898129 | None:intergenic |
CACCAAGTATAGCTACAGGT+CGG | 0.615230 | 4.1:-84897904 | None:intergenic |
TTAAGTTGAGACTGCAGGGG+AGG | 0.616117 | 4.1:-84898477 | None:intergenic |
AGTATAGCTACAGGTCGGGT+AGG | 0.625069 | 4.1:-84897899 | None:intergenic |
TGATGGTCCAGATGATTGGG+AGG | 0.628482 | 4.1:+84898097 | MS.gene026794:CDS |
ACCATGCATGTTATCAAATG+GGG | 0.644999 | 4.1:+84896395 | MS.gene026794:CDS |
GATGGTCCAGATGATTGGGA+GGG | 0.653067 | 4.1:+84898098 | MS.gene026794:CDS |
GTCATGTTGTAGAAGACATG+CGG | 0.655778 | 4.1:+84899572 | MS.gene026794:CDS |
TAACATTCAAATCCTATGAG+GGG | 0.669236 | 4.1:+84899126 | MS.gene026794:CDS |
CTCTTAAGTTGAGACTGCAG+GGG | 0.679564 | 4.1:-84898480 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTATAATTTTTTTAAAAAA+AGG | - | chr4.1:84899156-84899175 | None:intergenic | 0.0% |
!! | AAAAATCAAATAAAAAATAG+AGG | - | chr4.1:84897068-84897087 | None:intergenic | 10.0% |
!! | AAAATCAAATAAAAAATAGA+GGG | - | chr4.1:84897067-84897086 | None:intergenic | 10.0% |
!!! | AAAAGTTGTTATTTTTTTAT+AGG | + | chr4.1:84897254-84897273 | MS.gene026794:intron | 10.0% |
!!! | AAATCTTTATATTTTTTATG+AGG | - | chr4.1:84898213-84898232 | None:intergenic | 10.0% |
!!! | AATCTTTATATTTTTTATGA+GGG | - | chr4.1:84898212-84898231 | None:intergenic | 10.0% |
!!! | ATTTGGTTTTTTATTTAATT+AGG | + | chr4.1:84898812-84898831 | MS.gene026794:intron | 10.0% |
!! | AAAAAAAGTAGTAGTTAATT+TGG | - | chr4.1:84897167-84897186 | None:intergenic | 15.0% |
!! | CATAATAAAAAATTTAAGCT+TGG | + | chr4.1:84897563-84897582 | MS.gene026794:intron | 15.0% |
!! | GTATACAACAATATTATTTA+GGG | + | chr4.1:84898540-84898559 | MS.gene026794:intron | 15.0% |
!! | TTGTTAAATAGCAAAATATA+AGG | - | chr4.1:84898045-84898064 | None:intergenic | 15.0% |
!!! | TAAAAATGAATTTTCAAGAA+AGG | - | chr4.1:84896467-84896486 | None:intergenic | 15.0% |
!!! | TTTTTATTTAATTAGGATGT+TGG | + | chr4.1:84898819-84898838 | MS.gene026794:intron | 15.0% |
!! | AAAATCTTATAGAAAACTAG+AGG | - | chr4.1:84897961-84897980 | None:intergenic | 20.0% |
!! | AAATCTTATAGAAAACTAGA+GGG | - | chr4.1:84897960-84897979 | None:intergenic | 20.0% |
!! | AGATAGTAAATTATATCACA+AGG | + | chr4.1:84897139-84897158 | MS.gene026794:intron | 20.0% |
!! | AGTACACATTATTAAATCTT+TGG | + | chr4.1:84898608-84898627 | MS.gene026794:intron | 20.0% |
!! | ATAAGAAAATAAGATAGACA+AGG | - | chr4.1:84897017-84897036 | None:intergenic | 20.0% |
!! | ATCTAATTGTATTGAAAAGA+TGG | - | chr4.1:84896860-84896879 | None:intergenic | 20.0% |
!! | CAACAAAAAAAAATTATGCA+TGG | - | chr4.1:84896494-84896513 | None:intergenic | 20.0% |
!! | GATAGTAAATTATATCACAA+GGG | + | chr4.1:84897140-84897159 | MS.gene026794:intron | 20.0% |
!! | GGTATACAACAATATTATTT+AGG | + | chr4.1:84898539-84898558 | MS.gene026794:intron | 20.0% |
!! | TCAACTATGAAATAATAAAG+CGG | + | chr4.1:84899194-84899213 | MS.gene026794:intron | 20.0% |
!!! | ACTTGACATGAATTTTTTTT+TGG | + | chr4.1:84897359-84897378 | MS.gene026794:intron | 20.0% |
!!! | AGTTGTTATTTTTTTATAGG+TGG | + | chr4.1:84897257-84897276 | MS.gene026794:intron | 20.0% |
!!! | ATAGTTGATATTATAAACCA+TGG | - | chr4.1:84896684-84896703 | None:intergenic | 20.0% |
!!! | ATATCTAAAATTCATTTGTC+AGG | + | chr4.1:84899032-84899051 | MS.gene026794:intron | 20.0% |
!!! | CTAAAACATCATTTTTATTG+TGG | + | chr4.1:84898361-84898380 | MS.gene026794:intron | 20.0% |
!!! | TTGCTATTTAACAATAATCA+GGG | + | chr4.1:84898051-84898070 | MS.gene026794:intron | 20.0% |
!!! | TTTGCTATTTAACAATAATC+AGG | + | chr4.1:84898050-84898069 | MS.gene026794:intron | 20.0% |
!!! | TTTTATATTGCAGTAAAATG+TGG | + | chr4.1:84896970-84896989 | MS.gene026794:intron | 20.0% |
! | AAAGAAAGGTAATGTAATCA+AGG | - | chr4.1:84896660-84896679 | None:intergenic | 25.0% |
! | AAATACTATAGAGCTATGTA+CGG | - | chr4.1:84897802-84897821 | None:intergenic | 25.0% |
! | AAGTAGAAACTTAAAGCAAT+CGG | + | chr4.1:84899322-84899341 | MS.gene026794:intron | 25.0% |
! | AATTTACTATCTTTCTCATC+AGG | - | chr4.1:84897131-84897150 | None:intergenic | 25.0% |
! | ACATCTTAATATGTGACATT+TGG | + | chr4.1:84898795-84898814 | MS.gene026794:intron | 25.0% |
! | AGAAAAACAAAGTTATCATG+TGG | - | chr4.1:84897326-84897345 | None:intergenic | 25.0% |
! | ATAACATTCAAATCCTATGA+GGG | + | chr4.1:84899125-84899144 | MS.gene026794:CDS | 25.0% |
! | CAAATAAAAAATAGAGGGTT+AGG | - | chr4.1:84897062-84897081 | None:intergenic | 25.0% |
! | CATTTGTATCAATGTTATGT+CGG | - | chr4.1:84898919-84898938 | None:intergenic | 25.0% |
! | GTTATATGATGCAGATAAAA+TGG | + | chr4.1:84897861-84897880 | MS.gene026794:intron | 25.0% |
! | TACACAATTCTGATTTAGTA+AGG | - | chr4.1:84897987-84898006 | None:intergenic | 25.0% |
! | TATAAAAGTTTACAGCGTAA+CGG | - | chr4.1:84896957-84896976 | None:intergenic | 25.0% |
! | TATAACATTCAAATCCTATG+AGG | + | chr4.1:84899124-84899143 | MS.gene026794:CDS | 25.0% |
! | TCAAATAGAATCTCAATAGA+AGG | - | chr4.1:84897218-84897237 | None:intergenic | 25.0% |
! | TGAGAATACAAACTTACATT+TGG | - | chr4.1:84897631-84897650 | None:intergenic | 25.0% |
! | TTATAAACCATGGTAAAGAA+AGG | - | chr4.1:84896674-84896693 | None:intergenic | 25.0% |
! | TTTGCAATTGATGTTAATGT+AGG | + | chr4.1:84898678-84898697 | MS.gene026794:intron | 25.0% |
!! | CTATTTGAGATAAATTCTGT+TGG | + | chr4.1:84897230-84897249 | MS.gene026794:intron | 25.0% |
!! | TTTATCATCTAGTTTAATCG+TGG | - | chr4.1:84899285-84899304 | None:intergenic | 25.0% |
!! | TTTTACAACTATATACTCGA+AGG | - | chr4.1:84898580-84898599 | None:intergenic | 25.0% |
!!! | AAAGCAATTGTTTCACTTTT+TGG | + | chr4.1:84899434-84899453 | MS.gene026794:intron | 25.0% |
!!! | TATGCTGTATGTTTTTAGTA+TGG | + | chr4.1:84897186-84897205 | MS.gene026794:intron | 25.0% |
!!! | TTTGATTTTTCTGAGATATG+AGG | + | chr4.1:84897078-84897097 | MS.gene026794:intron | 25.0% |
AAAGGAAAATTTCTTGCAAG+GGG | - | chr4.1:84896449-84896468 | None:intergenic | 30.0% | |
AAATGTGGTTAATATGGTCA+TGG | + | chr4.1:84896985-84897004 | MS.gene026794:intron | 30.0% | |
AACCATGCATGTTATCAAAT+GGG | + | chr4.1:84896394-84896413 | MS.gene026794:CDS | 30.0% | |
AACTGCTAGAAGAACTAATT+TGG | + | chr4.1:84896737-84896756 | MS.gene026794:CDS | 30.0% | |
AATAGAGGGTTAGGATATAA+AGG | - | chr4.1:84897053-84897072 | None:intergenic | 30.0% | |
AATCTTTGGTTGTTTACATG+TGG | + | chr4.1:84898622-84898641 | MS.gene026794:intron | 30.0% | |
ACAAAAATTACCATTGAGTC+AGG | + | chr4.1:84897451-84897470 | MS.gene026794:intron | 30.0% | |
ACAATAATCAGGGTTTGATA+TGG | + | chr4.1:84898061-84898080 | MS.gene026794:intron | 30.0% | |
ACAGACAAACACATAGATAT+TGG | - | chr4.1:84897777-84897796 | None:intergenic | 30.0% | |
ACTTGATGCCATATTATTTG+AGG | - | chr4.1:84899554-84899573 | None:intergenic | 30.0% | |
AGAAAGGAAAATTTCTTGCA+AGG | - | chr4.1:84896451-84896470 | None:intergenic | 30.0% | |
ATACTTTATATGCCCTTTGA+AGG | + | chr4.1:84896708-84896727 | MS.gene026794:intron | 30.0% | |
ATAGTGACATACTAATTCCA+TGG | - | chr4.1:84898775-84898794 | None:intergenic | 30.0% | |
ATTAAAATGACCTGACTCAA+TGG | - | chr4.1:84897464-84897483 | None:intergenic | 30.0% | |
ATTGTGGTATAGTGAAAGTT+GGG | + | chr4.1:84898377-84898396 | MS.gene026794:intron | 30.0% | |
CAATAATCAGGGTTTGATAT+GGG | + | chr4.1:84898062-84898081 | MS.gene026794:intron | 30.0% | |
CTTGATGCCATATTATTTGA+GGG | - | chr4.1:84899553-84899572 | None:intergenic | 30.0% | |
GAAAGGAAAATTTCTTGCAA+GGG | - | chr4.1:84896450-84896469 | None:intergenic | 30.0% | |
GAAGATAACAAACATCCATT+AGG | - | chr4.1:84897519-84897538 | None:intergenic | 30.0% | |
GCAGTAAAATGTGGTTAATA+TGG | + | chr4.1:84896979-84896998 | MS.gene026794:intron | 30.0% | |
TAACATTCAAATCCTATGAG+GGG | + | chr4.1:84899126-84899145 | MS.gene026794:CDS | 30.0% | |
TACAAACTTACATTTGGAAG+TGG | - | chr4.1:84897625-84897644 | None:intergenic | 30.0% | |
TACATTACCTTTCTTTACCA+TGG | + | chr4.1:84896664-84896683 | MS.gene026794:intron | 30.0% | |
TACTTTATATGCCCTTTGAA+GGG | + | chr4.1:84896709-84896728 | MS.gene026794:intron | 30.0% | |
TATAGGTGGAAAGCTTAATT+TGG | + | chr4.1:84897271-84897290 | MS.gene026794:intron | 30.0% | |
TATTGTGGTATAGTGAAAGT+TGG | + | chr4.1:84898376-84898395 | MS.gene026794:intron | 30.0% | |
TCAGTGAAATCTTTAGATCA+TGG | + | chr4.1:84899245-84899264 | MS.gene026794:intron | 30.0% | |
TCTTTAGATCATGGTTCAAT+TGG | + | chr4.1:84899254-84899273 | MS.gene026794:intron | 30.0% | |
TGACAAATTGATCTGTTCAT+CGG | + | chr4.1:84899384-84899403 | MS.gene026794:intron | 30.0% | |
TTACTAAGATTCTGGACTAA+GGG | + | chr4.1:84897299-84897318 | MS.gene026794:intron | 30.0% | |
! | AGAAGAACTAATTTGGAGTT+TGG | + | chr4.1:84896744-84896763 | MS.gene026794:CDS | 30.0% |
! | GCAAATATGTGTTTTCCTAA+TGG | + | chr4.1:84897501-84897520 | MS.gene026794:intron | 30.0% |
!! | AGTCAGGTCATTTTAATCTA+TGG | + | chr4.1:84897467-84897486 | MS.gene026794:intron | 30.0% |
!!! | TTTGGCTTGTTATTTTGTGT+AGG | + | chr4.1:84899452-84899471 | MS.gene026794:intron | 30.0% |
AAAAACAAGGAAGGTAGAGA+AGG | + | chr4.1:84899598-84899617 | MS.gene026794:CDS | 35.0% | |
AAATAAGATAGACAAGGCGT+AGG | - | chr4.1:84897011-84897030 | None:intergenic | 35.0% | |
AACATCAAGCAACTATAGTC+TGG | + | chr4.1:84896796-84896815 | MS.gene026794:CDS | 35.0% | |
AATTGTCACATGAAGCAAGA+AGG | + | chr4.1:84898720-84898739 | MS.gene026794:CDS | 35.0% | |
ACCATGCATGTTATCAAATG+GGG | + | chr4.1:84896395-84896414 | MS.gene026794:CDS | 35.0% | |
ACTTCTCTCCATATTTGTAG+AGG | - | chr4.1:84899070-84899089 | None:intergenic | 35.0% | |
ATTGTTGTATACCTTGATCC+TGG | - | chr4.1:84898532-84898551 | None:intergenic | 35.0% | |
ATTTGCAATATGTTCTGCTG+AGG | - | chr4.1:84898132-84898151 | None:intergenic | 35.0% | |
CAAAGATTGTGACTATAGCT+TGG | - | chr4.1:84896539-84896558 | None:intergenic | 35.0% | |
CATTTGAGCATTCAATGCAA+CGG | - | chr4.1:84898961-84898980 | None:intergenic | 35.0% | |
CTCAACTTAAGAGCAGTTAT+TGG | + | chr4.1:84898490-84898509 | MS.gene026794:CDS | 35.0% | |
GAACAGATCAATTTGTCAGT+TGG | - | chr4.1:84899382-84899401 | None:intergenic | 35.0% | |
GAACCATGCATGTTATCAAA+TGG | + | chr4.1:84896393-84896412 | MS.gene026794:CDS | 35.0% | |
GATGTAGTCCTCTACAAATA+TGG | + | chr4.1:84899059-84899078 | MS.gene026794:CDS | 35.0% | |
GTTACTAAGATTCTGGACTA+AGG | + | chr4.1:84897298-84897317 | MS.gene026794:intron | 35.0% | |
TCTCAAGTATGGATGGTAAA+AGG | - | chr4.1:84897654-84897673 | None:intergenic | 35.0% | |
TGGAAGAGTTACTAAGATTC+TGG | + | chr4.1:84897291-84897310 | MS.gene026794:intron | 35.0% | |
TTATACAGTTCCTAGAGAGA+TGG | + | chr4.1:84899483-84899502 | MS.gene026794:CDS | 35.0% | |
! | AATTGATCTGTTCATCGGTT+TGG | + | chr4.1:84899389-84899408 | MS.gene026794:intron | 35.0% |
! | GTTGCTTGATGTTTTCCTTT+AGG | - | chr4.1:84896789-84896808 | None:intergenic | 35.0% |
!!! | CTTGTTATTTTGTGTAGGCT+TGG | + | chr4.1:84899457-84899476 | MS.gene026794:intron | 35.0% |
!!! | GTCGACATAGTTTTAAAACG+CGG | + | chr4.1:84896907-84896926 | MS.gene026794:intron | 35.0% |
AAGGTTTGTGACTGTGATTG+TGG | - | chr4.1:84896641-84896660 | None:intergenic | 40.0% | |
ACACATGTAGTGAGACCTAA+AGG | + | chr4.1:84896771-84896790 | MS.gene026794:CDS | 40.0% | |
AGACATGCGGAACAAAAACA+AGG | + | chr4.1:84899585-84899604 | MS.gene026794:CDS | 40.0% | |
AGAGCAGTTATTGGACTAAG+TGG | + | chr4.1:84898499-84898518 | MS.gene026794:CDS | 40.0% | |
ATAGTGAAAGTTGGGATTGG+AGG | + | chr4.1:84898385-84898404 | MS.gene026794:intron | 40.0% | |
ATGCGGAACAAAAACAAGGA+AGG | + | chr4.1:84899589-84899608 | MS.gene026794:CDS | 40.0% | |
ATGGGAGAACTATCAGATGA+TGG | + | chr4.1:84898080-84898099 | MS.gene026794:CDS | 40.0% | |
ATTCCATGGCTCAGAAAAAC+TGG | - | chr4.1:84898761-84898780 | None:intergenic | 40.0% | |
CAATTGATGTAGCCGAAATG+TGG | + | chr4.1:84896585-84896604 | MS.gene026794:intron | 40.0% | |
CCATCCATACTTGAGATTGA+AGG | + | chr4.1:84897658-84897677 | MS.gene026794:intron | 40.0% | |
CCTTCAATCTCAAGTATGGA+TGG | - | chr4.1:84897661-84897680 | None:intergenic | 40.0% | |
CTGATCAGAATGATGACATC+CGG | + | chr4.1:84898284-84898303 | MS.gene026794:intron | 40.0% | |
GGTATAGTGAAAGTTGGGAT+TGG | + | chr4.1:84898382-84898401 | MS.gene026794:intron | 40.0% | |
GTCATGTTGTAGAAGACATG+CGG | + | chr4.1:84899572-84899591 | MS.gene026794:CDS | 40.0% | |
TAACGTCTGTGACCACATTT+CGG | - | chr4.1:84896600-84896619 | None:intergenic | 40.0% | |
TGCAGTCATGATTGTGGTTA+AGG | + | chr4.1:84896931-84896950 | MS.gene026794:intron | 40.0% | |
TTGGAAGTGGAAGTGATTCA+AGG | - | chr4.1:84897612-84897631 | None:intergenic | 40.0% | |
TTGTGACTATAGCTTGGCTA+AGG | - | chr4.1:84896533-84896552 | None:intergenic | 40.0% | |
! | ACCCCATTTGATAACATGCA+TGG | - | chr4.1:84896399-84896418 | None:intergenic | 40.0% |
! | AGATGATGGTCCAGATGATT+GGG | + | chr4.1:84898094-84898113 | MS.gene026794:CDS | 40.0% |
! | GTCAGTTGGTTCAAGTCTAA+TGG | - | chr4.1:84899368-84899387 | None:intergenic | 40.0% |
! | TGTGTATTCAGAAAGCGTAG+TGG | + | chr4.1:84898991-84899010 | MS.gene026794:intron | 40.0% |
! | TTACCAGTTTTTCTGAGCCA+TGG | + | chr4.1:84898755-84898774 | MS.gene026794:CDS | 40.0% |
!! | GGTGATAATGGTTTGAGGTA+TGG | + | chr4.1:84896831-84896850 | MS.gene026794:intron | 40.0% |
!! | GTCTTGGTGATAATGGTTTG+AGG | + | chr4.1:84896826-84896845 | MS.gene026794:CDS | 40.0% |
!!! | TCTGCAACTTGTTTTGCCAT+GGG | + | chr4.1:84898439-84898458 | MS.gene026794:CDS | 40.0% |
!!! | TTCTGCAACTTGTTTTGCCA+TGG | + | chr4.1:84898438-84898457 | MS.gene026794:CDS | 40.0% |
AAAAAAGGCTCACCCCTCAT+AGG | - | chr4.1:84899141-84899160 | None:intergenic | 45.0% | |
AAGCCACCAAGTATAGCTAC+AGG | - | chr4.1:84897911-84897930 | None:intergenic | 45.0% | |
AATCACGAGAACAATCGCAC+CGG | - | chr4.1:84898306-84898325 | None:intergenic | 45.0% | |
ACCAAGTATAGCTACAGGTC+GGG | - | chr4.1:84897906-84897925 | None:intergenic | 45.0% | |
AGATGGCTGAAGTCTCCAAT+TGG | + | chr4.1:84899500-84899519 | MS.gene026794:CDS | 45.0% | |
CACCAAGTATAGCTACAGGT+CGG | - | chr4.1:84897907-84897926 | None:intergenic | 45.0% | |
CACGCCTTCAATCTCAAGTA+TGG | - | chr4.1:84897665-84897684 | None:intergenic | 45.0% | |
CAGTTATTGGACTAAGTGGC+TGG | + | chr4.1:84898503-84898522 | MS.gene026794:CDS | 45.0% | |
CGGATGTCATCATTCTGATC+AGG | - | chr4.1:84898286-84898305 | None:intergenic | 45.0% | |
CTCAAACCTTGTGTTCAGCA+GGG | + | chr4.1:84899093-84899112 | MS.gene026794:CDS | 45.0% | |
GCATGTTATCAAATGGGGTC+TGG | + | chr4.1:84896400-84896419 | MS.gene026794:CDS | 45.0% | |
TCTAAACCCTCCCAATCATC+TGG | - | chr4.1:84898107-84898126 | None:intergenic | 45.0% | |
TGGGGGACCCTCAAATAATA+TGG | + | chr4.1:84899543-84899562 | MS.gene026794:CDS | 45.0% | |
TTGAAACCCTGCTGAACACA+AGG | - | chr4.1:84899102-84899121 | None:intergenic | 45.0% | |
! | CAGATGATGGTCCAGATGAT+TGG | + | chr4.1:84898093-84898112 | MS.gene026794:CDS | 45.0% |
! | CTGCATGGTCTTGGTGATAA+TGG | + | chr4.1:84896819-84896838 | MS.gene026794:CDS | 45.0% |
! | TATATGCCCTTTGAAGGGAG+TGG | + | chr4.1:84896714-84896733 | MS.gene026794:intron | 45.0% |
! | TATCAAATGGGGTCTGGTTC+TGG | + | chr4.1:84896406-84896425 | MS.gene026794:CDS | 45.0% |
! | TGTTTTGCCATGGGAAGGTA+TGG | + | chr4.1:84898448-84898467 | MS.gene026794:CDS | 45.0% |
!! | CTCTTAAGTTGAGACTGCAG+GGG | - | chr4.1:84898483-84898502 | None:intergenic | 45.0% |
!! | GCTCTTAAGTTGAGACTGCA+GGG | - | chr4.1:84898484-84898503 | None:intergenic | 45.0% |
!! | GTTTGTTGTCCGACATGTGT+GGG | + | chr4.1:84898890-84898909 | MS.gene026794:intron | 45.0% |
!! | TGCTCTTAAGTTGAGACTGC+AGG | - | chr4.1:84898485-84898504 | None:intergenic | 45.0% |
!! | TGTTTGTTGTCCGACATGTG+TGG | + | chr4.1:84898889-84898908 | MS.gene026794:intron | 45.0% |
!!! | CAACTTGTTTTGCCATGGGA+AGG | + | chr4.1:84898443-84898462 | MS.gene026794:CDS | 45.0% |
ACCCGACCTGTAGCTATACT+TGG | + | chr4.1:84897902-84897921 | MS.gene026794:CDS | 50.0% | |
AGCAGTTCCACTCCCTTCAA+AGG | - | chr4.1:84896724-84896743 | None:intergenic | 50.0% | |
AGTATAGCTACAGGTCGGGT+AGG | - | chr4.1:84897902-84897921 | None:intergenic | 50.0% | |
ATAGTCTGGCTGCATGGTCT+TGG | + | chr4.1:84896810-84896829 | MS.gene026794:CDS | 50.0% | |
CGACCTGTAGCTATACTTGG+TGG | + | chr4.1:84897905-84897924 | MS.gene026794:CDS | 50.0% | |
GAGACTTCAGCCATCTCTCT+AGG | - | chr4.1:84899496-84899515 | None:intergenic | 50.0% | |
GATGGTCCAGATGATTGGGA+GGG | + | chr4.1:84898098-84898117 | MS.gene026794:CDS | 50.0% | |
GCAACTATAGTCTGGCTGCA+TGG | + | chr4.1:84896804-84896823 | MS.gene026794:CDS | 50.0% | |
GCAGTTCCACTCCCTTCAAA+GGG | - | chr4.1:84896723-84896742 | None:intergenic | 50.0% | |
GCCAGCTGATGGTACTTTCA+AGG | + | chr4.1:84898166-84898185 | MS.gene026794:intron | 50.0% | |
GCCATTTCCATACCTTCCCA+TGG | - | chr4.1:84898458-84898477 | None:intergenic | 50.0% | |
GCTCAAACCTTGTGTTCAGC+AGG | + | chr4.1:84899092-84899111 | MS.gene026794:CDS | 50.0% | |
GCTGAAGTCTCCAATTGGCT+TGG | + | chr4.1:84899505-84899524 | MS.gene026794:CDS | 50.0% | |
GGGATTGGAGGCTTCAGTAT+GGG | + | chr4.1:84898397-84898416 | MS.gene026794:CDS | 50.0% | |
TGATGGTCCAGATGATTGGG+AGG | + | chr4.1:84898097-84898116 | MS.gene026794:CDS | 50.0% | |
TGGGATTGGAGGCTTCAGTA+TGG | + | chr4.1:84898396-84898415 | MS.gene026794:CDS | 50.0% | |
TGTGACTGTGATTGTGGTCG+CGG | - | chr4.1:84896635-84896654 | None:intergenic | 50.0% | |
! | GCCATGGGAAGGTATGGAAA+TGG | + | chr4.1:84898454-84898473 | MS.gene026794:CDS | 50.0% |
!! | AATTGGCTTGGCTCATGCCT+GGG | + | chr4.1:84899517-84899536 | MS.gene026794:CDS | 50.0% |
!! | GAAAGTACCATCAGCTGGCT+CGG | - | chr4.1:84898165-84898184 | None:intergenic | 50.0% |
!! | GCCTTGAAAGTACCATCAGC+TGG | - | chr4.1:84898170-84898189 | None:intergenic | 50.0% |
!! | TTAAGTTGAGACTGCAGGGG+AGG | - | chr4.1:84898480-84898499 | None:intergenic | 50.0% |
CAGGCATGAGCCAAGCCAAT+TGG | - | chr4.1:84899518-84899537 | None:intergenic | 55.0% | |
TTGTCAACCGAGCCAGCTGA+TGG | + | chr4.1:84898155-84898174 | MS.gene026794:CDS | 55.0% | |
! | TGTCGGTGTCCCACACATGT+CGG | - | chr4.1:84898902-84898921 | None:intergenic | 55.0% |
!! | ATTGGCTTGGCTCATGCCTG+GGG | + | chr4.1:84899518-84899537 | MS.gene026794:CDS | 55.0% |
!! | CAATTGGCTTGGCTCATGCC+TGG | + | chr4.1:84899516-84899535 | MS.gene026794:CDS | 55.0% |
ACAGGTCGGGTAGGAGCAGT+TGG | - | chr4.1:84897893-84897912 | None:intergenic | 60.0% | |
CAGGTCGGGTAGGAGCAGTT+GGG | - | chr4.1:84897892-84897911 | None:intergenic | 60.0% | |
CGCGGCTGCAGTCATGATTG+TGG | + | chr4.1:84896925-84896944 | MS.gene026794:intron | 60.0% | |
TTGGCTCATGCCTGGGGCTT+GGG | + | chr4.1:84899524-84899543 | MS.gene026794:CDS | 60.0% | |
!! | GGACTAAGTGGCTGGCTTCC+AGG | + | chr4.1:84898511-84898530 | MS.gene026794:CDS | 60.0% |
!! | GTGGCTGGCTTCCAGGATCA+AGG | + | chr4.1:84898518-84898537 | MS.gene026794:CDS | 60.0% |
CTTGGCTCATGCCTGGGGCT+TGG | + | chr4.1:84899523-84899542 | MS.gene026794:CDS | 65.0% | |
TGGCTCATGCCTGGGGCTTG+GGG | + | chr4.1:84899525-84899544 | MS.gene026794:CDS | 65.0% | |
GGCTCATGCCTGGGGCTTGG+GGG | + | chr4.1:84899526-84899545 | MS.gene026794:CDS | 70.0% | |
TTGAGGGTCCCCCAAGCCCC+AGG | - | chr4.1:84899537-84899556 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 84896391 | 84899627 | 84896391 | ID=MS.gene026794 |
chr4.1 | mRNA | 84896391 | 84899627 | 84896391 | ID=MS.gene026794.t1;Parent=MS.gene026794 |
chr4.1 | exon | 84896391 | 84896427 | 84896391 | ID=MS.gene026794.t1.exon1;Parent=MS.gene026794.t1 |
chr4.1 | CDS | 84896391 | 84896427 | 84896391 | ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1 |
chr4.1 | exon | 84896730 | 84896847 | 84896730 | ID=MS.gene026794.t1.exon2;Parent=MS.gene026794.t1 |
chr4.1 | CDS | 84896730 | 84896847 | 84896730 | ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1 |
chr4.1 | exon | 84897597 | 84897633 | 84897597 | ID=MS.gene026794.t1.exon3;Parent=MS.gene026794.t1 |
chr4.1 | CDS | 84897597 | 84897633 | 84897597 | ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1 |
chr4.1 | exon | 84897875 | 84897944 | 84897875 | ID=MS.gene026794.t1.exon4;Parent=MS.gene026794.t1 |
chr4.1 | CDS | 84897875 | 84897944 | 84897875 | ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1 |
chr4.1 | exon | 84898072 | 84898176 | 84898072 | ID=MS.gene026794.t1.exon5;Parent=MS.gene026794.t1 |
chr4.1 | CDS | 84898072 | 84898176 | 84898072 | ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1 |
chr4.1 | exon | 84898389 | 84898539 | 84898389 | ID=MS.gene026794.t1.exon6;Parent=MS.gene026794.t1 |
chr4.1 | CDS | 84898389 | 84898539 | 84898389 | ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1 |
chr4.1 | exon | 84898700 | 84898782 | 84898700 | ID=MS.gene026794.t1.exon7;Parent=MS.gene026794.t1 |
chr4.1 | CDS | 84898700 | 84898782 | 84898700 | ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1 |
chr4.1 | exon | 84899054 | 84899147 | 84899054 | ID=MS.gene026794.t1.exon8;Parent=MS.gene026794.t1 |
chr4.1 | CDS | 84899054 | 84899147 | 84899054 | ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1 |
chr4.1 | exon | 84899474 | 84899627 | 84899474 | ID=MS.gene026794.t1.exon9;Parent=MS.gene026794.t1 |
chr4.1 | CDS | 84899474 | 84899627 | 84899474 | ID=cds.MS.gene026794.t1;Parent=MS.gene026794.t1 |
Gene Sequence |
Protein sequence |